Citrus Sinensis ID: 015136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
madeghrytvdealtsagfgkFQYLVFAYAGLAVFAEAMEIMILSFIgpavksewgvspsaesLLSTVVFAGNLVGVYLWGLlsdnygrkkgFLGIAMITSGIgllsafspnyISLVTLRGLvgigigsgpvfSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSlapesprylnvkgrtTEARNILDKIALLnkaklpngmlvsdatsrpdeelappdntplltssriRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSklsstqskcgttltvsqsmhdsSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIaciftpeqlgw
Flexible Loop (DISEMBL)
MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALlnkaklpngMLVSDAtsrpdeelappdntplltssRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Low Complexity Region (SEG)
MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRItklksgfssflllfssrlvrttlllWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Disordered region (IsUnstruct)
*******YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKL*****************************RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTP*****
Disordered Region (DISOPRED)
*****HR***DEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV*******************************SGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Disordered Region (DISEMBL)
MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT********PPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKL****************MHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Disordered Region (DISPRO)
******RYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVS********************************FSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.987	0.814	0.495	8e-98
P30638	520	Putative transporter ZK63	yes	no	0.915	0.725	0.338	8e-60
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.902	0.678	0.356	3e-59
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.902	0.678	0.356	3e-59
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.902	0.678	0.354	2e-58
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.907	0.682	0.358	3e-58
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.907	0.682	0.346	1e-54
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.902	0.678	0.349	3e-54
Q6PDF3	494	Putative transporter SVOP	no	no	0.919	0.767	0.306	1e-44
Q1LVS8	506	Putative transporter SVOP	no	no	0.820	0.667	0.325	1e-43

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  357 bits (917), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 207/418 (49%), Positives = 283/418 (67%), Gaps = 11/418 (2%)

Query: 1   MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS 60
           MAD   R+TVDEAL + GFGKFQ  V AYAG+   AEAME+M+LSF+GPAV+S W +S  
Sbjct: 1   MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60

Query: 61  AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
            ESL+++VVFAG L+G Y WG++SD +GR+KGF+  A++T   G LSAFSPNY+ L+ LR
Sbjct: 61  QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120

Query: 121 GLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
            LVG+G+G GPV ++W+LEF+PA  RG WMV+FS FWT+G+IFEA+LAW+VM  L WRWL
Sbjct: 121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180

Query: 181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGM-LVSDAT 239
           LA SS+PS  +LL Y    ESPRYL ++GR  EA  IL+KIA +NK +LP G+      T
Sbjct: 181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240

Query: 240 SRPDEELAPPDNTPLLTS---------SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWML 290
              + +  P +NT LL +         S+I +   K    S L L S  L++ TLLLW++
Sbjct: 241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVV 300

Query: 291 FFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGI 350
           FFGN+F YYG++L+T++L+++ ++C  T    ++ +D + Y  VF+AS  E PGL+++  
Sbjct: 301 FFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAA 359

Query: 351 IVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           +VDR GRK S+  ML    I +LPL   QS  + T LL G R+    AFT+  I+ PE
Sbjct: 360 MVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPE 417

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  231 bits (589), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 221/417 (52%), Gaps = 40/417 (9%)

Query: 3   DEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE 62
           D    +TVDEA+ + GFG+FQ  +    G+A  A+AME+M+LS I PA+  EWG+S   +
Sbjct: 62  DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQ 121

Query: 63  SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL 122
           +L++T VF+G ++    WG + D +GR+KG     ++   +G++S  SP++  L+  RGL
Sbjct: 122 ALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGL 181

Query: 123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182
            G GIG  P     + EF+P A+R   +V+  +FW +G++FEA LA+ VM +  WR L+ 
Sbjct: 182 TGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMF 241

Query: 183 LSSIPSFAVLLLYSLA----PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDA 238
           LSS+P    L ++++A    PES R+    G    A   L   A +N+ +LP G LVS  
Sbjct: 242 LSSLP----LGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVS-- 295

Query: 239 TSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTY 298
                       +T   + SR  I            L S  L +TT+LLW ++   +F+Y
Sbjct: 296 ------------STKAGSESRGDIAN----------LLSPDLRKTTILLWCIWAITAFSY 333

Query: 299 YGIILMTSKLSSTQSKC-------GTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGII 351
           YG++L T+ L  +  +C       GT + V Q +  S  Y  +   +L E PGL++  +I
Sbjct: 334 YGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSD-YFDLLSTTLAEFPGLIITVLI 392

Query: 352 VDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           ++  GRK ++ +   +  I    L        +T L+  AR F  GAF  A ++TPE
Sbjct: 393 IEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPE 449

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 216/412 (52%), Gaps = 40/412 (9%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGRK G     + T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 188 --SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEE 245
              FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+    SR ++ 
Sbjct: 248 LLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDR 302

Query: 246 LAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT 305
               D                        LF+     TTLLLW ++F N+F+YYG++L+T
Sbjct: 303 GKMRD------------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLT 338

Query: 306 SKLSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAG 356
           ++L      CG +          SL         Y+ +   +L E PG+++   I+DR G
Sbjct: 339 TELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLG 398

Query: 357 RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           RK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++TPE
Sbjct: 399 RKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPE 450

Pongo abelii (taxid: 9601)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/412 (35%), Positives = 216/412 (52%), Gaps = 40/412 (9%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGRK G     + T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 188 --SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEE 245
              FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+    SR ++ 
Sbjct: 248 LLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDR 302

Query: 246 LAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT 305
               D                        LF+     TTLLLW ++F N+F+YYG++L+T
Sbjct: 303 GKMRD------------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLT 338

Query: 306 SKLSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAG 356
           ++L      CG +          SL         Y+ +   +L E PG+++   I+DR G
Sbjct: 339 TELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLG 398

Query: 357 RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           RK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++TPE
Sbjct: 399 RKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPE 450

Homo sapiens (taxid: 9606)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 215/412 (52%), Gaps = 40/412 (9%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGRK G     + T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247

Query: 188 --SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEE 245
              FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+    SR ++ 
Sbjct: 248 LLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDR 302

Query: 246 LAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT 305
               D                        LF+     TTLLLW ++F N+F+YYG++L+T
Sbjct: 303 GKMRD------------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLT 338

Query: 306 SKLSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAG 356
           ++L      C  +          SL         Y+ +   +L E PG+++   I+DR G
Sbjct: 339 TELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLG 398

Query: 357 RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           RK ++ +  ++   C L L +     ++T LL  AR F  G F  A ++TPE
Sbjct: 399 RKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPE 450

Bos taurus (taxid: 9913)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 212/410 (51%), Gaps = 36/410 (8%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGR+ G     + T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW LG++FE  LA  VM TL WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALP 247

Query: 188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELA 247
                +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++   
Sbjct: 248 LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI---VSRQEDR-- 302

Query: 248 PPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK 307
                      +IR             LFS +   TTLLLW ++F N+F+YYG++L+T++
Sbjct: 303 ----------GKIRD------------LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 308 LSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRK 358
           L      C  +          SL         Y  +   +L E PGL++   I+DR GRK
Sbjct: 341 LFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRK 400

Query: 359 LSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
            ++ I  I+     L L +     ++T  L  AR F  G F  A ++TPE
Sbjct: 401 KTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPE 450

Xenopus laevis (taxid: 8355)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 212/410 (51%), Gaps = 36/410 (8%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFG+FQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGRK G     + T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS+ P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP 247

Query: 188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELA 247
                +L    PES RY  + G   +A   L +IA  N A +P G L+    SR ++   
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDRGK 304

Query: 248 PPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK 307
             D                        LF+     TTLLLW ++F N+F+YYG++L+T++
Sbjct: 305 MRD------------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTE 340

Query: 308 LSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAGRK 358
           L      C  +          SL         Y+ +   +L E PG+++   ++DR GRK
Sbjct: 341 LFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRK 400

Query: 359 LSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
            ++ +  I+  +C L L +     ++T LL  AR F  G F  A ++TPE
Sbjct: 401 KTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPE 450

Mus musculus (taxid: 10090)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 214/412 (51%), Gaps = 40/412 (9%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           + V++A+ + GFG+FQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct: 68  FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G +    LWG +SD YGRK G       T   G+LSAF+P Y  ++ LRGLVG GI
Sbjct: 128 VVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGI 187

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS+ P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP 247

Query: 188 S--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEE 245
              FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+    SR ++ 
Sbjct: 248 LLVFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI---ISRQEDR 302

Query: 246 LAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT 305
               D                        LF+     TTLLLW ++F N+F+YYG++L+T
Sbjct: 303 GKMRD------------------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLT 338

Query: 306 SKLSSTQSKCGTTLTVSQSMHDSSL---------YLSVFLASLGELPGLVLAGIIVDRAG 356
           ++L      C  +          SL         Y+ +   +L E PG+++   ++DR G
Sbjct: 339 TELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLG 398

Query: 357 RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           RK ++ +  ++  +C L L +     ++T LL  AR F  G F  A ++TPE
Sbjct: 399 RKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPE 450

Rattus norvegicus (taxid: 10116)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 211/424 (49%), Gaps = 45/424 (10%)

Query: 3   DEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE 62
            E   +TV++A+ + GFG+F   +F   G     EAMEIM+++ + P ++ EW +     
Sbjct: 27  KETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQV 86

Query: 63  SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL 122
           + ++T+VF G +V   L+GLL+D YGR K  L   +  +   LL++FSP+YI  V LR +
Sbjct: 87  AFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTM 146

Query: 123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182
           VG G+           EF+P   RG  + +   FW  GS+   ++A +V+ T+ WRWL+ 
Sbjct: 147 VGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIR 206

Query: 183 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRP 242
           ++SIP   +++ +   PES R+    G T  A N L+ IA +N++ +P G LV       
Sbjct: 207 IASIPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVE------ 260

Query: 243 DEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGII 302
                     P+L          K G   F  L  S+ +RTTL +W+++ G SF YYG+I
Sbjct: 261 ----------PILE---------KRG--RFADLLDSKYLRTTLQIWIIWLGISFAYYGVI 299

Query: 303 LMTSKLSSTQSKCGTTL----TVSQSMHDS--------------SLYLSVFLASLGELPG 344
           L +++L      CG+       V ++  DS              S Y ++ +++LGE+  
Sbjct: 300 LASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIAL 359

Query: 345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACI 404
             L  + ++  GR+LSL+I +    +  L L +  S+  + G L   R      F    I
Sbjct: 360 NPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYI 419

Query: 405 FTPE 408
           +T E
Sbjct: 420 YTAE 423

Mus musculus (taxid: 10090)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 184/378 (48%), Gaps = 40/378 (10%)

Query: 3   DEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE 62
            E   YTV+EA+ S GFG F  L+F   G A   EAMEIM+L+ + P ++ EW +     
Sbjct: 44  KEPKCYTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQV 103

Query: 63  SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL 122
           +L+ST+VF G +V   L G ++D YGR K   G  +  S    L++FS +Y   + LR +
Sbjct: 104 ALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCM 163

Query: 123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182
           VG G+ +         EF+PA  R   + + S FW +GSI    L   V+ T+ WRW++ 
Sbjct: 164 VGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIR 223

Query: 183 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRP 242
            S IPS  ++ L+   PES R+    G    A + L +IA +N   LP G L        
Sbjct: 224 FSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMNNGVLPEGEL-------R 276

Query: 243 DEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGII 302
           + E+    N   L SS  R                    RT+LLLW  +F  SF+YYG +
Sbjct: 277 EPEVTERGNAVTLISSAFR--------------------RTSLLLWYSWFVASFSYYGSV 316

Query: 303 LMTSKLSSTQSKCGTTLTVSQSMH-------------DSSLYLSVFLASLGELPGLVLAG 349
           L +S+L      C T   +   +              +S  Y ++ ++ LGE+  + L  
Sbjct: 317 LSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNI 376

Query: 350 IIVDRAGRKLSLTIMLIL 367
           I+++  GRK S+ I+L+L
Sbjct: 377 ILLNIVGRKYSMVILLLL 394

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
224118680	492	predicted protein [Populus trichocarpa]	0.990	0.829	0.652	1e-142
255573803	498	sugar transporter, putative [Ricinus com	0.975	0.807	0.626	1e-136
383932368	482	MFS [Gossypium hirsutum]	0.973	0.831	0.639	1e-133
255574249	497	sugar transporter, putative [Ricinus com	0.973	0.806	0.616	1e-131
224118546	493	predicted protein [Populus trichocarpa]	0.990	0.827	0.607	1e-129
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.983	0.828	0.513	1e-118
224118676	492	predicted protein [Populus trichocarpa]	0.968	0.810	0.574	1e-116
242039569	491	hypothetical protein SORBIDRAFT_01g02099	0.983	0.824	0.513	1e-115
224095100	463	predicted protein [Populus trichocarpa]	0.936	0.833	0.526	1e-114
224031871	496	unknown [Zea mays] gi|238909026|gb|ACN35	0.990	0.822	0.504	1e-114

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/409 (65%), Positives = 325/409 (79%), Gaps = 1/409 (0%)

Query: 1   MADEGH-RYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSP 59
           M DE    YT+D+AL SAGFGKFQ+LV AYAGL  FAEAMEI+ILSF+GPAVKS+W +S 
Sbjct: 1   MDDEDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSS 60

Query: 60  SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTL 119
           + ESLLSTVVFAG LVG Y WGL SD  GR++GFLGI +ITS  G LS FSPNY+SL+ L
Sbjct: 61  TQESLLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLIL 120

Query: 120 RGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW 179
           R LVG+G+G GPVFS+WFLEFVPA+ RG WMV+FSTFWT G+IFEAALAWIV+  LNWRW
Sbjct: 121 RCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRW 180

Query: 180 LLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT 239
           LLA SS+PS A L  Y + PESPRYL++KGR TEA NIL+KIA LN++KLP GMLVSD+T
Sbjct: 181 LLAFSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDST 240

Query: 240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYY 299
              DEE AP   TPLL+S+R  ++  KSGFSSF++LFSS+L+RTTLLLW+LFFGN+F+YY
Sbjct: 241 IGLDEESAPSKYTPLLSSTRNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYY 300

Query: 300 GIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKL 359
           GIIL+TS+LSS + KC +T+  S+++ D SLY++VF+ SL ELPG++L+ IIVDR GRKL
Sbjct: 301 GIILLTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKL 360

Query: 360 SLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           S+  M +L  I +LPL   Q   L T LL GARM A G FT+A I+ PE
Sbjct: 361 SMAFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPE 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/402 (62%), Positives = 310/402 (77%)

Query: 7   RYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLS 66
           +YT+DEAL + GFGKFQ LV  YAGL  FAEAME+MILSF+GPAVKSEWG+S S ESLL+
Sbjct: 13  KYTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSSQESLLT 72

Query: 67  TVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIG 126
           +VVFAG L G Y WGL+SDNYGR+KG LG  ++T G G LS F PNYISL+TLR LVGIG
Sbjct: 73  SVVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIG 132

Query: 127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
           +G GPVFS+WFLEFVPA+ RG WMV++ST WT G+IFEA LAWIVM  L+WRWLLA SS+
Sbjct: 133 LGGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSL 192

Query: 187 PSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEEL 246
           PS  +LL Y LAPESPRYL  KGR T+A  IL+KIALLN+AKLP G+LVSD+T+  DEE 
Sbjct: 193 PSIVLLLFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEES 252

Query: 247 APPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTS 306
           +   + PLL+ +R R++  KS FSSF +LFSSRL++TTLLLW+L+FGNSF YYGIIL+TS
Sbjct: 253 SSLSHQPLLSLARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTS 312

Query: 307 KLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLI 366
           +LS  Q +C +  +  ++  D +LY+ +F+ SL ELPG++L+ I VDR GRK S+  M +
Sbjct: 313 ELSGRQDECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFV 372

Query: 367 LVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
              I +LPL   QS +L T  L GARM A G FTIACI+ PE
Sbjct: 373 AACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPE 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/402 (63%), Positives = 311/402 (77%), Gaps = 1/402 (0%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           YT+DEAL + GFGKFQ  V  YAGL  FAEAMEIMILSFIG AVKSEW +S   ESLLST
Sbjct: 9   YTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSSGQESLLST 68

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVFAG L+G   WGLLSDNYGR+KGFL I+M+T G GLLS FSPNY++L  LRGLVG G+
Sbjct: 69  VVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGL 128

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G   VF +WFLEF+PA+ RGMWMV+FSTFWT GSIFEA LAWIVM  LNWRW+LA S++P
Sbjct: 129 GGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVP 188

Query: 188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELA 247
           SFA+L+LY +APESPRYL +KG T++A  IL+KIA +N+ KLP G+LVS  ++  DEE A
Sbjct: 189 SFALLILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESA 248

Query: 248 PPDNT-PLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTS 306
           P +NT PLL S     T+ KSGFSSF +LFSS+L+RTTLLLW+LFFG+SF+YYGIIL+TS
Sbjct: 249 PSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTS 308

Query: 307 KLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLI 366
           KLSS QS C  +L  + +  D  LYL+ F+ S+ ELPGL+L+ I+VDR GRK S+ IM  
Sbjct: 309 KLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFG 368

Query: 367 LVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           L FI + PL + Q  +L T LL GARM A G FT+A I++PE
Sbjct: 369 LAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPE 410

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/402 (61%), Positives = 309/402 (76%), Gaps = 1/402 (0%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           Y +DEAL + GFGKFQ  V  YAGL  F+EAME+MILSF+GPAVK +W +S + ESLLST
Sbjct: 12  YNLDEALAAVGFGKFQGFVLVYAGLGWFSEAMEVMILSFVGPAVKLKWELSSTQESLLST 71

Query: 68  VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI 127
           VVF G L+G   WGL+SDNYGR+K  L I +ITSG G +SAFSPNY++LV LR LVG G+
Sbjct: 72  VVFGGMLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGL 131

Query: 128 GSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP 187
           G   VF +WFLEF+P + RG WMVIFSTFWTLG IFEA+LAWIVM+ LNWRWLLALS++P
Sbjct: 132 GGTHVFLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVP 191

Query: 188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEEL- 246
           SF++LL Y L PESPRYL +KGRT +A  +L+KIAL+N+ +LP GMLVS    + DEE+ 
Sbjct: 192 SFSLLLFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEIS 251

Query: 247 APPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTS 306
           A      LL   R +I+ LKSGFSSF LLFSS L++TTLLLW+LFFGN F+YYGIIL+TS
Sbjct: 252 ALEQKRSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTS 311

Query: 307 KLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLI 366
           +LSS++SKC  T+  SQ+  D SL++ V + S  ELPG++L+ ++VDR GRKLS+ IM I
Sbjct: 312 QLSSSESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFI 371

Query: 367 LVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
             +I +LPL   QS+IL TGLL GARMF+ G FT+A I+ PE
Sbjct: 372 FAWIFLLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPE 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/408 (60%), Positives = 305/408 (74%)

Query: 1   MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS 60
           M DE   YT+DEAL   GFGKFQ LV AYAGL  FAEAME+M+LSF+GP VKS+WG+S  
Sbjct: 1   MDDEAPAYTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSG 60

Query: 61  AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
            ESLLSTVVFAG LVG Y WGL+SDN GR++            GLLSAFSPNY SLV +R
Sbjct: 61  QESLLSTVVFAGMLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIR 120

Query: 121 GLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
            LVG+G+G   V  +WFLEFVPA  RG WMV+FSTFWTLG+IFEA+LAW+VM  L+WRWL
Sbjct: 121 CLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWL 180

Query: 181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATS 240
           LA SS+PS A+LL Y + PESPRYL +KGR  +A  IL KIALLN+++LP GMLV D+T 
Sbjct: 181 LAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTV 240

Query: 241 RPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYG 300
             +E+ AP   TPLL+S+R  I   KS FSSF +LFSS L++TTLLLW+L FGN F+YYG
Sbjct: 241 GQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYG 300

Query: 301 IILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLS 360
           IIL+TS+LSS Q KCG+T+  S+++ + SLY++VF+ SL ELPGL+L+ IIVDR GRKLS
Sbjct: 301 IILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLS 360

Query: 361 LTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           + +ML+L  I + PL    S  L T +L GARM   G+FTIA ++ PE
Sbjct: 361 MALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPE 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/411 (51%), Positives = 294/411 (71%), Gaps = 6/411 (1%)

Query: 3   DEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE 62
           D+   Y+VD+AL S+GFG++Q L+ +YAG+ + AEAME+M+LSF+GP+V+ EW ++   E
Sbjct: 4   DQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQE 63

Query: 63  SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL 122
           S+++++VF G L+G Y WG++SDNYGR++GFL  A++TSG G LSAF+PNY+SL++LR L
Sbjct: 64  SMITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFL 123

Query: 123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182
           VGIG+G GPV ++WFLEFVPA  RG WMV+FS FWT+G+IFEA+LAW VM    WRWLLA
Sbjct: 124 VGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLA 183

Query: 183 LSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRP 242
           LS++PSF +LL Y + PESPR+L +KGR TEA ++L+K+A LN  +LP+G LVSD     
Sbjct: 184 LSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIEL 243

Query: 243 DEELAPPDNTPLLTSSRIRITKLKSGFSSF-----LLLFSSRLVRTTLLLWMLFFGNSFT 297
           D EL+  ++T LL  +    T ++   SSF       L S +L+R TLLLWM FFGN+F+
Sbjct: 244 D-ELSTSESTTLLADAEEDDTIIEDKVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFS 302

Query: 298 YYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGR 357
           YYGI+L+TS+LS+    C      S   +D+SLY +VF++S  E+PG  L+ +IVDR GR
Sbjct: 303 YYGIVLLTSELSNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGR 362

Query: 358 KLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           KLS+  ML    + + PL   +++IL    L GAR+    +FTI  I+ PE
Sbjct: 363 KLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPE 413

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/416 (57%), Positives = 300/416 (72%), Gaps = 17/416 (4%)

Query: 8   YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
           YTVDEAL S GFGKFQ LV  YAGLA FA AME+MILSF+GPAVKS+W +S S ESLLST
Sbjct: 4   YTVDEALASVGFGKFQGLVLVYAGLAWFAYAMEVMILSFVGPAVKSQWDLSSSQESLLST 63

Query: 68  VVFAGNLVGVYLWGLLSDNYGRK---------------KGFLGIAMITSGIGLLSAFSPN 112
            VF G L+G + WGL+SD++GR+               KGFLG  ++T G GLLSAFSPN
Sbjct: 64  AVFGGMLIGSFFWGLVSDHHGRRQTIISPLIPCINYMLKGFLGATLLTCGAGLLSAFSPN 123

Query: 113 YISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM 172
           Y SLV LR LVG G+G G VFS+WFLEFVPA+ RG  M++ S FW  G+IFEA LAW+VM
Sbjct: 124 YASLVILRCLVGSGLGGGSVFSSWFLEFVPASHRGKRMLLLSWFWAFGTIFEALLAWMVM 183

Query: 173 ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNG 232
             L+WRWLLA+S +P+FA+LL YS  PESPRYL +KGR  +A NIL+KIALLN++KLP G
Sbjct: 184 PRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGRINDAYNILEKIALLNQSKLPPG 243

Query: 233 MLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFF 292
            LV D+T   DEE A  + TPLL+++       +SGF SFL+LFSS+L+RTTLLLW L F
Sbjct: 244 ELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFLMLFSSKLIRTTLLLWELLF 303

Query: 293 GNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIV 352
           GN F+YY IIL+TS+LSS QS+CG+ L  S+  +  SLY++VF+++L ELPG++L+  IV
Sbjct: 304 GNVFSYYAIILLTSELSSWQSRCGSNLLKSE--NPDSLYINVFISNLAELPGILLSATIV 361

Query: 353 DRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           DR GRKL++    +L  I +LPL   QS  L    L GARM    A+++A I+  E
Sbjct: 362 DRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARMSTKAAYSVATIYVQE 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/415 (51%), Positives = 292/415 (70%), Gaps = 10/415 (2%)

Query: 3   DEGHR--YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS 60
           +EG    YTVD+AL S+GFG+FQ L+ +YAG+ + AEAME+M+LSF+GP+V+ EW ++  
Sbjct: 2   EEGQSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSH 61

Query: 61  AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
            ES++++VVF G L+G Y WG++SDNYGR++GFL  A++TSG G LSAF+PNY+SL++LR
Sbjct: 62  QESMITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLR 121

Query: 121 GLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
            LVGIG+G GPV  +WFLEFVPA  RG WMV+FS FWT+G+I EA+LAW VM    WRWL
Sbjct: 122 FLVGIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTVMPKFGWRWL 181

Query: 181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATS 240
           LALS+IPSF +LL Y++ PESPR+L +KGRTTEA ++L+K+A LN  +LP+G LVSD   
Sbjct: 182 LALSAIPSFLLLLFYAITPESPRFLCMKGRTTEAVDVLEKMARLNNVQLPSGRLVSDKNI 241

Query: 241 RPDEELAPPDNTPLLTS-------SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFG 293
             DE     ++T LL+        S  R +    G  S   L + +L+R TLLLWM FFG
Sbjct: 242 ELDEVSGSSESTTLLSGAEESDNLSEDRGSDF-GGIKSVGKLLAPKLIRATLLLWMAFFG 300

Query: 294 NSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVD 353
           N+F YYGI+L+TS+LS+    C      S +  ++SLY +VF++S  E+PG  L+ +IVD
Sbjct: 301 NAFAYYGIVLLTSELSNGNRICAKQDVESVNSTNASLYKNVFISSFAEIPGSFLSAMIVD 360

Query: 354 RAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           R GRKLS+  ML    + ++PL   +++IL    L GAR+    +FTI  I+ PE
Sbjct: 361 RFGRKLSMASMLFTSCVFLVPLVFSRTDILTRISLFGARLCISASFTIVYIYAPE 415

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/408 (52%), Positives = 279/408 (68%), Gaps = 22/408 (5%)

Query: 1   MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS 60
           MAD G RYTVDEAL + GFGKFQ+LV  YAG+   +EAME+MILSF+GPAV S+WG++  
Sbjct: 1   MADGGPRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSH 60

Query: 61  AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
            ESL++TVVFAG LVG Y WG++SD YGR+KGF   A++TS  G LSAF+PNYI+L+  R
Sbjct: 61  EESLITTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISR 120

Query: 121 GLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
            LVG GIG GPV  AWFLEFVPA  RG WMV+FS FWT+G+IFE  LAWI+M  L WRWL
Sbjct: 121 CLVGFGIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAWIIMPRLGWRWL 180

Query: 181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATS 240
           LALS++PSF +L+ Y+L PESPRYL +KGR  EA  IL KIA LN  +LP G++V+    
Sbjct: 181 LALSALPSFLLLVFYTLTPESPRYLCLKGRKNEALIILKKIAKLNGKELPPGVVVAGN-- 238

Query: 241 RPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYG 300
             + EL   ++ P                   L++FS RLVR+TLLLW++ F N+F+YYG
Sbjct: 239 --EIELQGNNHLP-----------------EMLIIFSPRLVRSTLLLWVVIFANAFSYYG 279

Query: 301 IILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLS 360
           ++L+T++L+   + C  T   SQ   + + Y  VF+ S  E PGL+L+ +++DR GRKLS
Sbjct: 280 LVLLTTELNDRSNTCHQTKKQSQKPANIN-YKQVFITSFAEFPGLILSALVIDRLGRKLS 338

Query: 361 LTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           +  M  +  I +LPL + QS  + T LL GAR    G FTI  I+ PE
Sbjct: 339 MAAMFFVCCIFLLPLVVHQSTGVTTTLLFGARTCITGTFTIVYIYAPE 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224031871|gb|ACN35011.1| unknown [Zea mays] gi|238909026|gb|ACN35622.2| unknown [Zea mays] gi|413934143|gb|AFW68694.1| hypothetical protein ZEAMMB73_097319 [Zea mays] gi|413934144|gb|AFW68695.1| hypothetical protein ZEAMMB73_097319 [Zea mays]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/416 (50%), Positives = 288/416 (69%), Gaps = 8/416 (1%)

Query: 1   MADEGHR--YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVS 58
           M +EG    YTVD+AL S+GFG+FQ L+ +YAG+ + AEAME+M+LSF+GP+V+ EW ++
Sbjct: 5   MMEEGQSASYTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLT 64

Query: 59  PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT 118
              ES++++VVF G L+G Y WG++SDNYGR++GFL  A++TSG G  SAF+PNY+SL++
Sbjct: 65  SHQESMITSVVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLIS 124

Query: 119 LRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR 178
           LR LVGIG+G GPV  +WFLEFVPA  RG WMV+FS FWT+G+I EA+LAW +M    WR
Sbjct: 125 LRFLVGIGLGGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTIMPKFGWR 184

Query: 179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDA 238
           WLLALS++PSF +LL Y++ PESPR+L +KGRTTEA +IL+K+A LN  +LP+G LVSD 
Sbjct: 185 WLLALSAVPSFLLLLFYAITPESPRFLCMKGRTTEAVDILEKMARLNNVQLPSGRLVSDK 244

Query: 239 TSRPDEELAPPDNTPLLTSSRIRITKLKS------GFSSFLLLFSSRLVRTTLLLWMLFF 292
               DE     ++T LL  +       +       G  S   L + +L+R TLLLWM FF
Sbjct: 245 NIELDEVSGSSESTTLLAGAEESDNLNEDQGSDFGGIKSVGKLLAPKLIRATLLLWMAFF 304

Query: 293 GNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIV 352
           GN+F YYGI+L+TS+LS+    C      S    ++SLY +VF++S  E+PG  L+ +IV
Sbjct: 305 GNAFAYYGIVLLTSELSNGNRICAKEDVESVHSTNASLYKNVFISSFAEIPGSFLSAMIV 364

Query: 353 DRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
           DR GRK S+  ML    + +LPL   +++IL    L GAR+    +FTI  I+ PE
Sbjct: 365 DRFGRKRSMASMLFTSCVFLLPLVFSRTDILTRISLFGARLCISASFTIVYIYAPE 420

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.987	0.814	0.476	9.1e-100
ZFIN|ZDB-GENE-060526-336	549	svopa "SV2 related protein hom	0.550	0.413	0.432	3.8e-60
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.546	0.410	0.428	8.8e-59
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.597	0.473	0.388	2.3e-58
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.546	0.410	0.428	2.3e-58
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.546	0.465	0.428	2.3e-58
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.546	0.411	0.428	3.8e-58
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.546	0.410	0.428	3.8e-58
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.546	0.410	0.428	4.8e-58
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.546	0.406	0.428	1.6e-57

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 199/418 (47%), Positives = 274/418 (65%)

Query:     1 MADEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS 60
             MAD   R+TVDEAL + GFGKFQ  V AYAG+   AEAME+M+LSF+GPAV+S W +S  
Sbjct:     1 MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60

Query:    61 AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
              ESL+++VVFAG L+G Y WG++SD +GR+KGF+  A++T   G LSAFSPNY+ L+ LR
Sbjct:    61 QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120

Query:   121 GLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
              LVG+G+G GPV ++W+LEF+PA  RG WMV+FS FWT+G+IFEA+LAW+VM  L WRWL
Sbjct:   121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180

Query:   181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATS 240
             LA SS+PS  +LL Y    ESPRYL ++GR  EA  IL+KIA +NK +LP G+L S+  +
Sbjct:   181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240

Query:   241 RPDEEL-APPDNTPLLTS---------SRIRIXXXXXXXXXXXXXXXXXXXXXXXXXWML 290
               +E    P +NT LL +         S+I +                         W++
Sbjct:   241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVV 300

Query:   291 FFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGI 350
             FFGN+F YYG++L+T++L+++ ++C  T    ++ +D + Y  VF+AS  E PGL+++  
Sbjct:   301 FFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAA 359

Query:   351 IVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE 408
             +VDR GRK S+  ML    I +LPL   QS  + T LL G R+    AFT+  I+ PE
Sbjct:   360 MVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPE 417

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)]

 Score = 460 (167.0 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
 Identities = 99/229 (43%), Positives = 137/229 (59%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE-SLLS 66
             + V++A+ + GFG FQ+ +    GL+  A+AME+MILS + P +  EW + PS E +LL+
Sbjct:    68 FMVEDAVEAIGFGTFQWKLSILTGLSWMADAMEMMILSILAPQLHCEWAL-PSWEVALLT 126

Query:    67 TVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIG 126
             +VVF G ++   LWG +SD YGRK G     + T   G+LSAF+P Y  ++ LR LVG G
Sbjct:   127 SVVFIGMMISSSLWGNISDKYGRKTGLKMSVLWTLFYGILSAFAPIYGWILFLRALVGFG 186

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW LG++FE  LA +VM TL WRWLLALS+I
Sbjct:   187 IGGAPQSVTLYAEFLPMRSRATCILLIEIFWALGTVFEVLLAILVMPTLGWRWLLALSTI 246

Query:   187 PSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P F    L    PES RY  + G   +A N L +IA  N   +P G L+
Sbjct:   247 PLFIFAFLCFWLPESARYDVLTGNQEKALNTLKRIAAENNVPMPLGKLI 295

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 246

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   247 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 460 (167.0 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 99/255 (38%), Positives = 147/255 (57%)

Query:     3 DEGHRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAE 62
             D    +TVDEA+ + GFG+FQ  +    G+A  A+AME+M+LS I PA+  EWG+S   +
Sbjct:    62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQ 121

Query:    63 SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL 122
             +L++T VF+G ++    WG + D +GR+KG     ++   +G++S  SP++  L+  RGL
Sbjct:   122 ALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGL 181

Query:   123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA 182
              G GIG  P     + EF+P A+R   +V+  +FW +G++FEA LA+ VM +  WR L+ 
Sbjct:   182 TGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMF 241

Query:   183 LSSIPS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSD--- 237
             LSS+P   FAV   +   PES R+    G    A   L   A +N+ +LP G LVS    
Sbjct:   242 LSSLPLGIFAVASFW--LPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSSTKA 299

Query:   238 -ATSRPD-EELAPPD 250
              + SR D   L  PD
Sbjct:   300 GSESRGDIANLLSPD 314

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAV 246

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   247 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 444 (161.4 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:     3 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 62

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:    63 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 121

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   122 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSAV 181

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   182 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 230

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    67 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 126

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:   127 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 185

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   186 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 245

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   246 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 294

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAV 246

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   247 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 444 (161.4 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LSAF+P Y  ++ LRGLVG G
Sbjct:   128 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSAFAPVYSWILVLRGLVGFG 186

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA  VM +L WRWLL LS++
Sbjct:   187 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLSAV 246

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   247 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 295

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 99/231 (42%), Positives = 140/231 (60%)

Query:     8 YTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLST 67
             + V++A+ + GFGKFQ+ +    GLA  A+AME+MILS + P +  EW +     +LL++
Sbjct:    74 FMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 133

Query:    68 VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVGIG 126
             VVF G +    LWG +SD YGRK G L I+++ T   G+LS F+P Y  ++ LRGLVG G
Sbjct:   134 VVFVGMMSSSTLWGNISDQYGRKTG-LKISVLWTLYYGILSGFAPIYSWILVLRGLVGFG 192

Query:   127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI 186
             IG  P     + EF+P   R   +++   FW +G++FE  LA +VM TL WRWLL LS++
Sbjct:   193 IGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVLVMPTLGWRWLLILSAL 252

Query:   187 PS--FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV 235
             P   FAVL  +   PES RY  + G   +A   L +IA  N A +P G L+
Sbjct:   253 PLLLFAVLCFW--LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI 301

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.4952	0.9878	0.814	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	9e-66
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	8e-32
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	9e-29
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-21
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-19
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-15
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	4e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-11
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	9e-11
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	9e-10
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	7e-09
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	7e-07
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	9e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	1e-05
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-05
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	9e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	0.002
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	0.003

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  217 bits (555), Expect = 9e-66
 Identities = 119/411 (28%), Positives = 197/411 (47%), Gaps = 50/411 (12%)

Query: 6   HRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSF--IGPAVKSEWGVSPSAE- 62
            R+ VD+    +  G     +    GLA     ++    S+      + +EW +      
Sbjct: 69  LRFMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAW 127

Query: 63  --SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR 120
              L  +  F G L+G +++G LSD +GRKK  L   ++T+  G+L+AFSPNY   +  R
Sbjct: 128 KVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187

Query: 121 GLVGIGIGSGPVFSAWF-LEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW 179
            LVG+GIG   V +     EF+P  +R +   +   F++LG +    +A+ +    +WRW
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRW 244

Query: 180 LLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT 239
           L    S+P+F   LL    PESPR+L  +GR  EA  IL +IA +N  KLP  +L     
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLS---- 300

Query: 240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYY 299
              +++         L+SS+ + + L        L  +  L +TTL L ML+F  +F+YY
Sbjct: 301 LSLEKD---------LSSSKKQYSFLD-------LFRTPNLRKTTLCLMMLWFTTAFSYY 344

Query: 300 GIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKL 359
           G++L    L                    ++YL +F++ L ELP  ++  +++DR GR+ 
Sbjct: 345 GLVLDLGNL------------------GGNIYLDLFISGLVELPAKLITLLLIDRLGRRY 386

Query: 360 SLTIMLILVFICILPLAMLQSN--ILITGLLVGARMFAFGAFTIACIFTPE 408
           ++   L+L  + +L L  +  +   L T L V  +     AF +  ++T E
Sbjct: 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAE 437

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score =  127 bits (320), Expect = 8e-32
 Identities = 83/309 (26%), Positives = 140/309 (45%), Gaps = 21/309 (6%)

Query: 14  LTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGN 73
           +   G G+FQ+ +F   GLA+ A+ +E+ ++ F+ P+ + +  +  S + +L  +V+ G 
Sbjct: 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGM 215

Query: 74  LVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PV 132
           +VG + WG L+D  GRK+  L    +       S+F   Y   +  R L G GIG   P+
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275

Query: 133 FSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-------------NWRW 179
             ++F EF+   KRG  +     FW +G I+ AA+AW ++                +WR 
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335

Query: 180 LLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLN-KAK-LPNGMLVSD 237
            + + + P    +   +  PESPR+    G+  EA  IL  I   N +AK  P  +   +
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395

Query: 238 ATSRPDEE----LAPPDNTPLLTSSRIRITKLKSG-FSSFLLLFSSRLVRTTLLLWMLFF 292
                 +E        D         +R      G + +FL  F+  +   T+ L  ++F
Sbjct: 396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWF 455

Query: 293 GNSFTYYGI 301
             SF YYG+
Sbjct: 456 TLSFGYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  115 bits (291), Expect = 9e-29
 Identities = 90/392 (22%), Positives = 151/392 (38%), Gaps = 41/392 (10%)

Query: 10  VDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVV 69
           V   +      ++Q+     + L +  +  ++  + F  PA+ +EWG+ P     L +  
Sbjct: 2   VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAG 61

Query: 70  FAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGS 129
             G   G   +G L+D  GR++  L   ++ S   LL A + N   L+ LR L G+G+G 
Sbjct: 62  LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGG 121

Query: 130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI-P 187
             P  +A   E+ P   RG  + +    + +G+     LA  ++    WR L  +  I P
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181

Query: 188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELA 247
              +LLL    PES  +L  K R    R I++ IA   +A+                 L 
Sbjct: 182 LLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAE-------------AQSALP 227

Query: 248 PPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK 307
                              +  S F  LF  +  R T+LLW+L+F      Y +     K
Sbjct: 228 EQ------------KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPK 275

Query: 308 LSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTI-MLI 366
           L                   S       L + G + G ++ G + DR G +++  + +L 
Sbjct: 276 LMVE-----------LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG 324

Query: 367 LVFICILPLAMLQSNILITGLLVGARMFAFGA 398
            VF  ++   +    +L+  L   A  F  G 
Sbjct: 325 AVFAVLVGSTLFSPTLLLL-LGAIAGFFVNGG 355

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 85/372 (22%), Positives = 143/372 (38%), Gaps = 66/372 (17%)

Query: 56  GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP--NY 113
             S     L+ ++   G L+G    G L D +GRKK  L   ++     LL  F+   ++
Sbjct: 42  AASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSF 101

Query: 114 ISLVTLRGLVGIGIGSGPVFSAWFL-EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM 172
             L+  R +VG+G+G   V    ++ E  P   RG    ++    T G +  A +   + 
Sbjct: 102 YMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLN 161

Query: 173 ITLN---WRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKL 229
              N   WR  L L  +P+  +L+     PESPR+L +KG+  EAR +L K+        
Sbjct: 162 KYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKL-------- 213

Query: 230 PNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWM 289
                VSD      EE    + +            +++  +S+L LF  + VR  LL+ +
Sbjct: 214 ---RGVSDVDQEIQEEKDSLERS------------VEAEKASWLELFRGKTVRQRLLMGV 258

Query: 290 LFFG-------NSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGEL 342
           +          N+  YY                    T+ +++  S   L   +  +   
Sbjct: 259 MLQIFQQLTGINAIFYYSP------------------TIFETLGLSDSLLVTIIVGVVNF 300

Query: 343 PGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ---------SNILITGLLVGARM 393
               +A  +VDR GR+  L +    + IC L L +             + I  +L+    
Sbjct: 301 VFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILL---F 357

Query: 394 FAFGAFTIACIF 405
            AF A     + 
Sbjct: 358 IAFFALGWGPVP 369

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 105/423 (24%), Positives = 153/423 (36%), Gaps = 60/423 (14%)

Query: 11  DEALTSAGFGKFQYLVFAYAGLAVFAEAMEIM-------ILSFIGPAVKSEWGVSPSAES 63
           +  +T AG G   + V   + +A     M           L+      K     S S  S
Sbjct: 11  ELLVTPAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSS 70

Query: 64  LLSTVVFA----GNLVGVYLWGLLSDNYGRKKGFLGIAM--ITSGIG-LLSAFSPNYISL 116
            L  +V +    G  +G    G LSD +GRKK  L IA+  +   I   L+AF+ +   L
Sbjct: 71  SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130

Query: 117 VTLRGLVGIGIGSGPVFSAWFL-EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-- 173
           +  R L+GIG+G        +L E  P A RG    ++    T G +         +   
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190

Query: 174 -TLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNG 232
            TL WR  L L  IP+  + L     PESPR+L  KGR  EAR  L ++          G
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARL---------RG 241

Query: 233 MLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFF 292
               D     + EL     +    S +     L S           RL    +L W   F
Sbjct: 242 TSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRR----RLFLGVVLQWFQQF 297

Query: 293 --GNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGI 350
              N+  YY   +  +   ST      ++ V             F  +        +A  
Sbjct: 298 TGINAIMYYSPTIFENAGVSTDHAFLVSIIV---------GAVNFAFTF-------VAIF 341

Query: 351 IVDRAGRKLSLTI----MLILVFICILPLAML-------QSNILITGLLVGARMFAFGAF 399
           +VDR GR+  L I    M I +F+  +  A           N+ I  +L+    FA G  
Sbjct: 342 LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWG 401

Query: 400 TIA 402
            + 
Sbjct: 402 PVP 404

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 1/174 (0%)

Query: 27  FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN 86
                L  F   ++  +LS   P +  + G+S S   L+ +    G  +G  L G LSD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 87  YGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK 145
           +GR++  L   ++ +   LL AF+ +   L+  R L+G+G G+  P  +A   E+ P  +
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 146 RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAP 199
           RG  + +FS  + LG++    L  ++  +L WRWL  + +I    + LL     
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 72/385 (18%), Positives = 150/385 (38%), Gaps = 52/385 (13%)

Query: 23  QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGL 82
           Q+  F+ A L    +A +  +++ +   V  E+G++    + L +        G  ++GL
Sbjct: 10  QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGL 69

Query: 83  LSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI-GSGPVFSAWFLEFV 141
             D YGR+   +   ++ S   L   F+P YI++   R ++GIG+ G     +A+ +E  
Sbjct: 70  WGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW 129

Query: 142 PAAKRGMWMVIFSTFWTLGSIFEAALAWIVM--ITLNWRWLLALSSIPSFAVLLLYSLAP 199
           P   R     +  + + +G++  A +  +V+      WR L  +S +P    L L    P
Sbjct: 130 PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIP 189

Query: 200 ESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSR 259
           E+  +          R ++D   L         ++++ A +                   
Sbjct: 190 EAEDWKEKHAGKALVRTMVDI--LYGGEHRIANIVMTLAAA------------------- 228

Query: 260 IRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSS--TQSKCGT 317
                               +V++    W       F Y  ++++ + L S   Q    T
Sbjct: 229 --------------------MVQSAGKRWPT-----FVYLVVLVLFANLYSHPIQDLLPT 263

Query: 318 TLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM 377
            L     +   ++   V  +++G + G  + G + D  GR+ +    L+   + I+P+  
Sbjct: 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA 323

Query: 378 LQSNILITGLLV-GARMFAFGAFTI 401
           + +N+ + GL +   +M   G + I
Sbjct: 324 IGANVAVLGLGLFFQQMLVQGIWGI 348

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 1/167 (0%)

Query: 32  LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK 91
            A  A     ++   +   +  + G+SP+   LL T    G  +   L G LSD +GR++
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 92  GFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWM 150
             L   ++ +   LL  F+ +   L+ LR L G+G G+  P  +A   ++ P  +RG  +
Sbjct: 64  VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123

Query: 151 VIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSL 197
            + S  + LG+     L  ++     WR    + +I +    +L +L
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 33/230 (14%)

Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLS 84
           L+F Y   AV +  +E +   F+ P   SE   + S           G ++G  L G  S
Sbjct: 22  LLFGY-DTAVISGTVESLNTVFVAPQNLSE-SAANSLLGFCVASALIGCIIGGALGGYCS 79

Query: 85  DNYGRKKGFL--GIAMITSGIG-------LLSAFSPNY---ISLVTLRGLVGIGIGSGPV 132
           + +GR+       +    S +G         S    N       V  R + GIG+G   +
Sbjct: 80  NRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM 139

Query: 133 FSAWFL-EFVPAAKRG-------------MWMVIFSTFWTLGSIFEAALAWIVMITLNWR 178
            S  ++ E  PA  RG               +V F  ++   S      +W+      WR
Sbjct: 140 LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARS---GDASWLNTD--GWR 194

Query: 179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAK 228
           ++ A  +IP+   L+L    PE+PRYL  +G+  +A  IL KI     A 
Sbjct: 195 YMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT 244

Length = 479

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 44  LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI 103
           LSF  P ++ + G+S +    + +    G +VG +  G L D +G +K      +I    
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72

Query: 104 GLLSAFSPNYISLVTLRGLVGIG-IGSGPVF----SAWFLEFVPAAKRGMWMVIFSTFWT 158
             L AF+  Y+SL  LR L+G       P      ++WF    PA++R   + IF++   
Sbjct: 73  TGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWF----PASERATAVSIFNSAQG 128

Query: 159 LGSIFEAALAWIVMITLNWRWLLALSSIP----SFAVLLLYSLAPESPRYLNVKGRTTEA 214
           LG I    L   ++I  +W+W   +  +         L      P+  ++L     T E 
Sbjct: 129 LGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL-----TEEE 183

Query: 215 RNILDKIALLNKAK 228
           + I+    L  +  
Sbjct: 184 KYIVVGGLLAEQQG 197

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 72/401 (17%), Positives = 148/401 (36%), Gaps = 62/401 (15%)

Query: 23  QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGL 82
           Q+  F+ A L    +  + ++++ +   V+ E+G++    + L +  F     G  L G 
Sbjct: 18  QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGA 77

Query: 83  LSDNYGRKKGFLGIAMITS----GIG-LLSAFSPNYISLVTLRGLVGIGI-GSGPVFSAW 136
           + D YGR+     +AM+ S     +G L   F+P Y +L   R ++G+G+ G     + +
Sbjct: 78  MGDRYGRR-----LAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATY 132

Query: 137 FLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYS 196
            +E  P   R        + +++G++  A +  +V+    WR L  +  +P    L L  
Sbjct: 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRK 192

Query: 197 LAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLT 256
             PE+  +          R ++D I    + ++ N +L   A                  
Sbjct: 193 NLPEAEDWKEKHAGKAPVRTMVD-ILYRGEHRIINILLTLAA------------------ 233

Query: 257 SSRIRITKLKSGFSSFLLLFSSRLVRTTLLL------------WMLFFGNSFTYYGIILM 304
                        ++    F+  L    ++             +M+         G++LM
Sbjct: 234 ------------AAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLM 281

Query: 305 TSKLSS------TQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRK 358
              L +       Q+   T L         ++   +F +  G   G  + G + D  G +
Sbjct: 282 VVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR 341

Query: 359 LSLTIMLILVFICILPLAMLQSNI--LITGLLVGARMFAFG 397
            +    L++  + I+P+  +      ++  LL   +M   G
Sbjct: 342 KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQG 382

Length = 496

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 81/374 (21%), Positives = 143/374 (38%), Gaps = 72/374 (19%)

Query: 30  AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR 89
           A L    +  + M++ +I   +K++ G++    + L+T  F G   G  L+GLL+D +GR
Sbjct: 23  AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR 82

Query: 90  KKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGI-GSGPVFSAWFLEFVPAAKRGM 148
           K   +   +  S    LS  +   I L   R +VG+G+ G     S + +E  P   +  
Sbjct: 83  KPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142

Query: 149 WMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVK 208
                 + + +G+I  A           WR    +  +P   V+ + + APES  +   K
Sbjct: 143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAK 202

Query: 209 -------GRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIR 261
                   ++  +   L    L N+A+ P  + V                          
Sbjct: 203 LSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCV-------------------------- 236

Query: 262 ITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTV 321
                     F++LFS              FG ++  +G  L+ + L+        T  V
Sbjct: 237 ----------FIVLFS-------------IFGANWPIFG--LLPTYLAGEGFD---TGVV 268

Query: 322 SQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML-QS 380
           S  M  ++          G + G ++ G+  DR G K + +I L++ F+ I PL  + Q 
Sbjct: 269 SNLMTAAAF---------GTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQD 319

Query: 381 NILITGLLVGARMF 394
           N L+ G  +   M 
Sbjct: 320 NYLLLGACLFGLMA 333

Length = 426

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 76/383 (19%), Positives = 123/383 (32%), Gaps = 77/383 (20%)

Query: 44  LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI 103
            +   P +  E G+S +   LL +       +  ++ G +SD     + FL I +I   I
Sbjct: 14  FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN-PRVFLPIGLILCAI 72

Query: 104 -GLLSAFSPNYISLVTLRGLVGI--GIGSGPVFS---AWFLEFVPAAKRGMWMVIFSTFW 157
             L   FS +   +  L  L GI  G+G  P       WF      ++RG W+  ++   
Sbjct: 73  VNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWVSFWNCSH 128

Query: 158 TLGSIFEAALAWIVM-ITLNWRWLLALSS----IPSFAVLLLYSLAPESPRYLNVKGRTT 212
            +G      L    +    +W W+  +      I S    LL   +P+S           
Sbjct: 129 NVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---------- 178

Query: 213 EARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSF 272
                           LP           P EE+   +           +TK +      
Sbjct: 179 ---------------GLP-----------PAEEMPNEEPDGDAEKKEEELTKKQIFLQYV 212

Query: 273 LLLFSSRLVRTTLLLWMLFFGNSFTYY--GIILMTSKLSSTQSKCGTTLTVSQSMHDSSL 330
           LL           +LW +  G  F Y     IL  S L  TQ K  +    S +      
Sbjct: 213 LL---------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAF----- 258

Query: 331 YLSVFLASLGELPGLVLAGIIVDR---AGRKLSLTIMLILVFIC--ILPLAMLQSNILIT 385
                L  LG L G +LAG + D+     R       + L+ +   +  L    + ++  
Sbjct: 259 ----TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDL 314

Query: 386 GLLVGARMFAFGAFTIACIFTPE 408
             L       +G   +  +   E
Sbjct: 315 ICLFALGFLVYGPQMLIGVIASE 337

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLS 84
           L+   A            +L+++   ++   G+S +   LL ++   G ++G  L GLLS
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 85  DNYGRKKGFLGIAMITSGIG-LLSAFSPNYISLVTLRGLVGIGIG-SGPVFSAWFLEFVP 142
           D  GR++  L I ++ + +G LL A +P+   L+    L+G G+G + P       E  P
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295

Query: 143 AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAP 199
              RG    +F+TF +LG      LA +++ T  +  +  + +  +    LL  L P
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 3/179 (1%)

Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLS 84
            + A A LA FA      +   + P + ++ GVS  A   L T    G  +G  L  LL+
Sbjct: 14  ALLALA-LAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLT 72

Query: 85  DNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIG-SGPVFSAWFLEFVPA 143
               R++  LG+  +     LLSA +P++  L+  R L G+  G    + +A     VP 
Sbjct: 73  GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132

Query: 144 AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL-LALSSIPSFAVLLLYSLAPES 201
            KRG  + +  T  TL ++    L   +     WR   LA++ +   A+LLL+ L P S
Sbjct: 133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS 191

Length = 394

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 3/165 (1%)

Query: 32  LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK 91
           L  F   ++  I++   P +  + G S S    + T     N + + L G L+  +G ++
Sbjct: 9   LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR 68

Query: 92  GFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIG--SGPVFSAWFLEFVPAAKRGMW 149
            FL      +   LL   +PN   ++  R + G G G      FS     + P  KRG  
Sbjct: 69  LFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY-PPEKRGRA 127

Query: 150 MVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL 194
           M I+     +       L   ++   +WRW+  ++      V+++
Sbjct: 128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 3/197 (1%)

Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLS 84
                  L++       M L    P + ++     S   +  T+   G   G  LWG LS
Sbjct: 6   FALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLS 64

Query: 85  DNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFS-AWFLEFVPA 143
           D YGR+   L    I +   L  A S N  +L+ LR +   G  +G V S A   +  P 
Sbjct: 65  DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124

Query: 144 AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA-LSSIPSFAVLLLYSLAPESP 202
            +      I      L       L   +++ L+W  + A LS        L++ + PE+ 
Sbjct: 125 EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184

Query: 203 RYLNVKGRTTEARNILD 219
            Y      +T     L 
Sbjct: 185 PYEARIQISTYFETFLL 201

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 35/223 (15%)

Query: 17  AGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAV-KSEWGVS----PSAESLLSTVVFA 71
           A FG   +     AG+  F ++ ++  +S +   +    +        S  + ++     
Sbjct: 8   APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASI 67

Query: 72  GNLVGVYLWGLLSDNYGRKK--GFLGIAMITSGIGLLSAFSPNYISLVTL----RGLVGI 125
           G L G   +G L+D  GRK+  G   I MI + +    +   +  S++      R  +G+
Sbjct: 68  GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127

Query: 126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-------- 176
           GIG   P+ +    EF     RG  M         G +  A +A IV+            
Sbjct: 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187

Query: 177 ---------------WRWLLALSSIPSFAVLLLYSLAPESPRY 204
                          WR L+   ++P+   L      PE+PRY
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY 230

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 2/173 (1%)

Query: 49  PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA 108
           P +  E+G+  +      +    G L G  L G L+D  GRK+  +    +     L +A
Sbjct: 39  PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98

Query: 109 FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAAL 167
            + ++ SL+  R L G+G+G   P   A   E V    RG  + +       G    + +
Sbjct: 99  QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158

Query: 168 AWIVMITLNWRWLLALSSI-PSFAVLLLYSLAPESPRYLNVKGRTTEARNILD 219
             +      WR +  +  + P   V LL    PES  +    G   +   +L 
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 12/158 (7%)

Query: 42  MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS 101
              +   PA+  + G+S +   +L +       V  ++ G+LSD    +  F+   +I S
Sbjct: 46  KNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-FMAFGLILS 104

Query: 102 GI-GLLSAFSPNYISLVTLRGLVGI--GIGSGPVFS---AWFLEFVPAAKRGMWMVIFST 155
            I  +L  FSP+      L  L G   G+G  P       WF       +RG W  I++T
Sbjct: 105 AIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF----SRKERGTWWSIWNT 160

Query: 156 FWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLL 193
              +G      +A +     +  W  A    P    ++
Sbjct: 161 SHNIGGALAPLVALLAFFAFHGGWRAAF-YFPGIIAII 197

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	99.98
PRK03893	496	putative sialic acid transporter; Provisional	99.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.98
PRK09705	393	cynX putative cyanate transporter; Provisional	99.98
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK12382	392	putative transporter; Provisional	99.97
PRK11043	401	putative transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.96
PRK09874	408	drug efflux system protein MdtG; Provisional	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
PRK10054	395	putative transporter; Provisional	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
PTZ00207	591	hypothetical protein; Provisional	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.91
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.91
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.91
KOG2615	451	consensus Permease of the major facilitator superf	99.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.84
PRK09669	444	putative symporter YagG; Provisional	99.82
PF13347	428	MFS_2: MFS/sugar transport protein	99.81
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.8
PRK10429	473	melibiose:sodium symporter; Provisional	99.8
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
PRK11462	460	putative transporter; Provisional	99.76
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
KOG2563	480	consensus Permease of the major facilitator superf	99.75
PRK09848	448	glucuronide transporter; Provisional	99.74
COG2211	467	MelB Na+/melibiose symporter and related transport	99.73
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.72
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.64
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.63
PRK09528	420	lacY galactoside permease; Reviewed	99.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.58
PRK05122	399	major facilitator superfamily transporter; Provisi	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
PRK10489	417	enterobactin exporter EntS; Provisional	99.54
PRK09874	408	drug efflux system protein MdtG; Provisional	99.54
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.54
PRK12382	392	putative transporter; Provisional	99.53
PRK03893	496	putative sialic acid transporter; Provisional	99.53
PRK03545	390	putative arabinose transporter; Provisional	99.53
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.52
PRK03699	394	putative transporter; Provisional	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.51
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.51
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.5
PRK09705	393	cynX putative cyanate transporter; Provisional	99.48
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.47
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.47
KOG3626	735	consensus Organic anion transporter [Secondary met	99.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.46
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.44
TIGR00891	405	2A0112 putative sialic acid transporter.	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.43
PRK12307	426	putative sialic acid transporter; Provisional	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
PRK11010	491	ampG muropeptide transporter; Validated	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.4
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.4
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.4
PLN00028	476	nitrate transmembrane transporter; Provisional	99.39
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.39
PRK11663	434	regulatory protein UhpC; Provisional	99.38
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.38
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
TIGR00895	398	2A0115 benzoate transport.	99.36
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.36
PRK15075	434	citrate-proton symporter; Provisional	99.35
PRK10504	471	putative transporter; Provisional	99.35
KOG0569	485	consensus Permease of the major facilitator superf	99.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.32
TIGR00898	505	2A0119 cation transport protein.	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.31
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
PRK10054	395	putative transporter; Provisional	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.26
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.26
PRK10091	382	MFS transport protein AraJ; Provisional	99.25
PRK11902	402	ampG muropeptide transporter; Reviewed	99.24
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.24
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.2
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.18
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.18
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.17
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.15
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.12
PRK09848	448	glucuronide transporter; Provisional	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.11
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.1
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
PF13347	428	MFS_2: MFS/sugar transport protein	99.09
PRK10429	473	melibiose:sodium symporter; Provisional	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.06
TIGR00901	356	2A0125 AmpG-related permease.	99.05
PRK10133	438	L-fucose transporter; Provisional	99.05
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
PRK11043	401	putative transporter; Provisional	99.01
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.0
PRK09669	444	putative symporter YagG; Provisional	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.97
COG0477	338	ProP Permeases of the major facilitator superfamil	98.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.86
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.84
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.83
KOG0254	513	consensus Predicted transporter (major facilitator	98.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.81
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.8
KOG0637	498	consensus Sucrose transporter and related proteins	98.79
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.78
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.77
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.76
PRK11462	460	putative transporter; Provisional	98.74
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.71
KOG3762	618	consensus Predicted transporter [General function	98.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.65
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.65
KOG2532	466	consensus Permease of the major facilitator superf	98.61
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.61
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.59
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.59
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.58
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.56
PF12832	77	MFS_1_like: MFS_1 like family	98.52
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.51
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.47
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.44
KOG3810	433	consensus Micronutrient transporters (folate trans	98.35
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.28
KOG3762	618	consensus Predicted transporter [General function	98.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.19
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.15
PTZ00207	591	hypothetical protein; Provisional	98.14
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.07
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.0
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.99
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.98
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.82
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.81
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.8
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.78
COG3202	509	ATP/ADP translocase [Energy production and convers	97.77
KOG2615	451	consensus Permease of the major facilitator superf	97.65
KOG2563	480	consensus Permease of the major facilitator superf	97.62
PF12832	77	MFS_1_like: MFS_1 like family	97.52
TIGR00805	633	oat sodium-independent organic anion transporter.	97.5
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.29
KOG3097	390	consensus Predicted membrane protein [Function unk	97.26
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.98
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.87
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.71
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.69
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.49
PRK03612	521	spermidine synthase; Provisional	96.47
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.4
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.23
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.19
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.01
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.92
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.88
KOG3880	409	consensus Predicted small molecule transporter inv	94.46
COG0477	338	ProP Permeases of the major facilitator superfamil	94.25
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.48
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	92.12
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	90.96
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.89
KOG0637	498	consensus Sucrose transporter and related proteins	88.63
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.46
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	85.02
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	82.26

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.7e-40  Score=320.25  Aligned_cols=400  Identities=26%  Similarity=0.464  Sum_probs=306.5

Q ss_pred             HhhhcCCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 015136           13 ALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKG   92 (412)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~   92 (412)
                      ..++.+.++++|.++++++++.+..+++...++..+|.+.+++|++..+.+++.+++.++++++++++|+++||+|||+.
T Consensus       155 ~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~  234 (742)
T TIGR01299       155 IIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC  234 (742)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            34455667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015136           93 FLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV  171 (412)
Q Consensus        93 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  171 (412)
                      ++++.++.+++.++++++++++.++++|++.|++.|.. +...++++|++|+++|++.+++..+++.+|.++++.++..+
T Consensus       235 lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       235 LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998 88999999999999999999999999999999999988776


Q ss_pred             Hhc-------------CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcc---c
Q 015136          172 MIT-------------LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGML---V  235 (412)
Q Consensus       172 ~~~-------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  235 (412)
                      ...             .+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+.........   .
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~  394 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSV  394 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHH
Confidence            643             358999998888887777778889999999999999999999998887655432111000   0


Q ss_pred             cccCCCCCcc--cC-CCCCCCcccchhhhh-hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 015136          236 SDATSRPDEE--LA-PPDNTPLLTSSRIRI-TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSST  311 (412)
Q Consensus       236 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (412)
                      .+.+...+..  .+ +.+......+...+. ......+.+++.++++++++.++.+++.+++..+.+|++..|.|.+.+.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       395 NHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             HHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000000  00 000000000000000 0111122357778999999999999999999999999999999976432


Q ss_pred             ccc---------------------------------c------c------------------------------------
Q 015136          312 QSK---------------------------------C------G------------------------------------  316 (412)
Q Consensus       312 ~~~---------------------------------~------~------------------------------------  316 (412)
                      ...                                 .      +                                    
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  554 (742)
T TIGR01299       475 LQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDT  554 (742)
T ss_pred             HHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhh
Confidence            100                                 0      0                                    


Q ss_pred             --------------------cccccccCCC---------CcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHH
Q 015136          317 --------------------TTLTVSQSMH---------DSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLIL  367 (412)
Q Consensus       317 --------------------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~  367 (412)
                                          +.++...|.+         .........+..++.++|.+++|+++||+|||++++++.++
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~l  634 (742)
T TIGR01299       555 LFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVL  634 (742)
T ss_pred             hccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                                0000000000         01234456677789999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          368 VFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+++.+++.+.++....+++.++.+++.++.++...++++|++|+
T Consensus       635 sai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt  679 (742)
T TIGR01299       635 SCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPS  679 (742)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            999988888766666666666677777788889999999999995

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=261.64  Aligned_cols=394  Identities=40%  Similarity=0.664  Sum_probs=331.3

Q ss_pred             HHHHhhhcCCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 015136           10 VDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR   89 (412)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr   89 (412)
                      .++.....++.+.+|........+++...+.....+.+.|.+.+..|.+..+..++....+.|..+++..+|..+|++||
T Consensus        63 v~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~gr  142 (528)
T KOG0253|consen   63 VDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGR  142 (528)
T ss_pred             ehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhc
Confidence            34556667788999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015136           90 KKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAW  169 (412)
Q Consensus        90 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  169 (412)
                      |+.+........+..++.+.++|+..+++.|.+.|+|.|+.|...++-.|..|..+|+..+-.. ..+.+|.++...+..
T Consensus       143 r~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law  221 (528)
T KOG0253|consen  143 RKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW  221 (528)
T ss_pred             chhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888888889999999999888777 999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCC
Q 015136          170 IVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPP  249 (412)
Q Consensus       170 ~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      ....++||||.....+.+..+.....+++||+|++...+++++++.+.++++...|....+..........+.++++...
T Consensus       222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~  301 (528)
T KOG0253|consen  222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL  301 (528)
T ss_pred             HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch
Confidence            99999999999999998888888888999999999999999999999999999999887776554443322222222221


Q ss_pred             CCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc------cccc-
Q 015136          250 DNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTT------LTVS-  322 (412)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-  322 (412)
                      ++.+.        +-.++...+..+++.++.++.+++.+..++.+.+.||+.......+.+....|+.+      ..+. 
T Consensus       302 ~~~~~--------~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~  373 (528)
T KOG0253|consen  302 DDSKS--------SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETR  373 (528)
T ss_pred             hhhhh--------ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhh
Confidence            11111        01122233677889999999999999999999999999988887777665544322      1111 


Q ss_pred             --cCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhH
Q 015136          323 --QSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFT  400 (412)
Q Consensus       323 --~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  400 (412)
                        -..+...-..-..+..+..+.|.++.+++.||+|||+.+..+.++.+++.+.+....+.....+..+..-++..+.+.
T Consensus       374 ~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fq  453 (528)
T KOG0253|consen  374 ANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQ  453 (528)
T ss_pred             hcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchhe
Confidence              123334445566777889999999999999999999999999999999999998877777777788888899999999


Q ss_pred             HHHhhccCCCCC
Q 015136          401 IACIFTPEQLGW  412 (412)
Q Consensus       401 ~~~~~~~e~~P~  412 (412)
                      +.++|++|+||+
T Consensus       454 vaYvYtPEVyPT  465 (528)
T KOG0253|consen  454 VAYVYTPEVYPT  465 (528)
T ss_pred             EEEEecCcccch
Confidence            999999999996

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.1e-35  Score=282.75  Aligned_cols=363  Identities=20%  Similarity=0.297  Sum_probs=260.2

Q ss_pred             hhhcCCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhc-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015136           14 LTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEW-----GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG   88 (412)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G   88 (412)
                      .++.+.++++++++.++.++.+.++++...++...|.+.+++     +.+..+.+++.+.+.+++.++++++|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G   84 (502)
T TIGR00887         5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG   84 (502)
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            355667788888999999999999999999999999887653     345667899999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHhhcchh------HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHH
Q 015136           89 RKKGFLGIAMITSGIGLLSAFSPN------YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGS  161 (412)
Q Consensus        89 rr~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  161 (412)
                      ||+++.++.++..++.++++++++      ++.++++|++.|++.|.. +....+++|++|+++|++++++.+....+|.
T Consensus        85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887        85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            999999999999999988888765      788999999999999998 8889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-----------------------cCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChH-HHHHH
Q 015136          162 IFEAALAWIVMI-----------------------TLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTT-EARNI  217 (412)
Q Consensus       162 ~~~~~~~~~l~~-----------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  217 (412)
                      .+++.++..+..                       ..+||+.+.+.+++.++..+..+++||+|+|+..+++++ ++++.
T Consensus       165 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~  244 (502)
T TIGR00887       165 LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD  244 (502)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence            999988876542                       247999998888888877777889999999998877764 35554


Q ss_pred             HHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccch----hhHHHHHHHHHHHHH
Q 015136          218 LDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSS----RLVRTTLLLWMLFFG  293 (412)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~  293 (412)
                      ..+....+..+.         .++.++.+++ ++            .   ...+++++++.    +..+.++.....++.
T Consensus       245 ~~~~~~~~~~~~---------~~~~~~~~~~-~~------------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (502)
T TIGR00887       245 MSAVLQVKIEAE---------PDEVEKASTA-VE------------V---PKASWSDFFTHFFKWRHGKHLLGTAGSWFL  299 (502)
T ss_pred             HHHHhccccccC---------cccccchhcc-cc------------c---hhhhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            444432111000         0000000000 00            0   00134455432    222334444455556


Q ss_pred             HHHHHHHHHHhhhcccccccccccccccccCCCCcchH------------HHHHHHHcchhhHHHHHHHHHHhhchhhHH
Q 015136          294 NSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLY------------LSVFLASLGELPGLVLAGIIVDRAGRKLSL  361 (412)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~g~l~dr~grr~~l  361 (412)
                      ..+.+|+...+.|.+.++.           |+++...+            .......++.+++.+++++++||+|||+++
T Consensus       300 ~~~~~y~~~~~~p~i~~~~-----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l  368 (502)
T TIGR00887       300 LDIAFYGVNLNQKVILSAI-----------GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ  368 (502)
T ss_pred             HHHHHHccccccHHHHHHH-----------cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Confidence            6677888888888776443           34332211            123344556777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          362 TIMLILVFICILPLAMLQS----NILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       362 ~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +++..+.+++.+++....+    ........+...++..+..+..+.+.+|++|+
T Consensus       369 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       369 LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            8888887777666654221    11111112222222344567888899999995

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-35  Score=256.13  Aligned_cols=344  Identities=19%  Similarity=0.232  Sum_probs=276.3

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      .+++|+.+++.+++++...++.+..++...|.+.++.++|.+|.|.+.+.+++.|.++-++.|.++||.+.|+.+.+|++
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHH--HHHHhcC
Q 015136           99 ITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALA--WIVMITL  175 (412)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~  175 (412)
                      +.++..++++++++.+.+.+..++.|..+|+. |.+...+.+|+|+++||+..++++++-++|..+.|++.  +.+..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999998 99999999999999999999999999999999999999  8898889


Q ss_pred             ChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCc
Q 015136          176 NWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPL  254 (412)
Q Consensus       176 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (412)
                      +||..|++.++++++. ++.++..+|+|+..-. ++.+|.++.                       +.+.+.++++.   
T Consensus       183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~~~d-----------------------~~e~~~~~~~~---  235 (448)
T COG2271         183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEYRGD-----------------------PLEIYEEEKEN---  235 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHhhcC-----------------------chhhhhhhccC---
Confidence            9999999999888876 5567778888763211 111111000                       00000000000   


Q ss_pred             ccchhhhhhhhcccccchhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHH
Q 015136          255 LTSSRIRITKLKSGFSSFLLLFS--SRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYL  332 (412)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (412)
                                  ++. +.++.+.  .-..+..+..++..+.....-|++..|.|.|+.+.          .|++..++..
T Consensus       236 ------------~~l-s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~----------k~~s~~~a~~  292 (448)
T COG2271         236 ------------EGL-TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV----------KGFSLVKANW  292 (448)
T ss_pred             ------------CCc-cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----------cCCCHHHHHH
Confidence                        000 1222221  12234566777777788888999999999888544          6899999999


Q ss_pred             HHHHHHcchhhHHHHHHHHHHhh--chhhHHH-HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhHhHHHHhhcc
Q 015136          333 SVFLASLGELPGLVLAGIIVDRA--GRKLSLT-IMLILVFICILPLAMLQSN--ILITGLLVGARMFAFGAFTIACIFTP  407 (412)
Q Consensus       333 ~~~~~~~~~~~g~~~~g~l~dr~--grr~~l~-~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (412)
                      ..+.+-+++++|++++|+++||+  |||.... +.++...++.+.+...++.  ....++++..|+...+..-+.-....
T Consensus       293 a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~  372 (448)
T COG2271         293 AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAA  372 (448)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            99999999999999999999995  6665554 4555555555555554443  66677788888888888777788888


Q ss_pred             CCCCC
Q 015136          408 EQLGW  412 (412)
Q Consensus       408 e~~P~  412 (412)
                      |+.|.
T Consensus       373 e~~pK  377 (448)
T COG2271         373 EFVPK  377 (448)
T ss_pred             ccccH
Confidence            88773

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=9.2e-35  Score=269.40  Aligned_cols=353  Identities=16%  Similarity=0.201  Sum_probs=247.9

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      +|.+|..+..+++.++.++.++...+...|.+.+|+|+|+++.|++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            35678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-----  173 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  173 (412)
                      .+++.+++++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++++.+.++|..+++++++.+.+     
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999998 8778889999999999999999999999999999999998874     


Q ss_pred             -cCChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCC
Q 015136          174 -TLNWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDN  251 (412)
Q Consensus       174 -~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (412)
                       ..|||+.|++.+++.++. .+.++++||+|+...  .-.++.++...+..+.+..+.+          +.+   ...+ 
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~--~l~~~~~~~~~~~~~~~~~~~~----------~~~---~~~~-  226 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK--WLDEEDKKALKEMIDNDQLTLE----------QPE---GAFA-  226 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC--CCCHHHHHHHHHHHHhcccccc----------ccc---cccc-
Confidence             369999999988877665 445667788875210  0011111111111110000000          000   0000 


Q ss_pred             CCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchH
Q 015136          252 TPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLY  331 (412)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (412)
                      ++...           ....+++++++    ..+.....+++....+++...|.|.++++..         .+.++.+++
T Consensus       227 ~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~~~~  282 (412)
T TIGR02332       227 HAAMP-----------QRSMLREIFTP----AIMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNIMIG  282 (412)
T ss_pred             ccccc-----------HHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHHHhH
Confidence            00000           00023333332    2344555556666777888888998885421         246677888


Q ss_pred             HHHHHHHcchhhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          332 LSVFLASLGELPGLVLAGIIVDRAGRKLS-LTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       332 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      .......++.++|+++.|+++||+++|+. ......+..++.+......+.........+.+++.....+..+....|.+
T Consensus       283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  362 (412)
T TIGR02332       283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSI  362 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhccccc
Confidence            88899999999999999999999997764 34444444443332222222222222222223333333344555666766


Q ss_pred             CC
Q 015136          411 GW  412 (412)
Q Consensus       411 P~  412 (412)
                      |+
T Consensus       363 ~~  364 (412)
T TIGR02332       363 SL  364 (412)
T ss_pred             ch
Confidence            63

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=9e-34  Score=263.53  Aligned_cols=328  Identities=20%  Similarity=0.271  Sum_probs=258.1

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++++|.++.+.++..+.++++....+...|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      ..++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.++..+.+..+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  169 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR  169 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            9999998999999999999999999999887 888899999999999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          179 WLLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      +.|++.+++.++.. +...++||+|++..++++.++.++                                         
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------------------------------  208 (406)
T PRK11551        170 HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP-----------------------------------------  208 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh-----------------------------------------
Confidence            99998876655543 345567887653221111000000                                         


Q ss_pred             hhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHH
Q 015136          258 SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                                   ..+..++++..+.....+...+......+....+.|.+.++           .|.++.+.+......
T Consensus       209 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~g~s~~~~~~~~~~~  264 (406)
T PRK11551        209 -------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-----------QGLSRSQAGLVQIAF  264 (406)
T ss_pred             -------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCChhhhhHHHHHH
Confidence                         00001111111122222233333344555666667766633           468888889999999


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .++.++++++.|++.||+|||+.+..+.+...++.+.+...++.+...+..++.+++..+..+..+++..|.+|+
T Consensus       265 ~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  339 (406)
T PRK11551        265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT  339 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch
Confidence            999999999999999999999998887777777766666555555555666667777777788888888888874

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=3.4e-33  Score=259.13  Aligned_cols=358  Identities=25%  Similarity=0.363  Sum_probs=263.1

Q ss_pred             CCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 015136           18 GFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIA   97 (412)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~   97 (412)
                      +.++++|+.+....+..+..+.+....++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            34566777777777788888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136           98 MITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus        98 ~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      ++.+++.++..+.++++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  169 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG  169 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999988 8888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcc
Q 015136          177 WRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLL  255 (412)
Q Consensus       177 w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (412)
                      ||+.|++.++..++. .+...++||++++..++ +.++.++..++.......+.+         ++.+++.   .+.+  
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~--  234 (398)
T TIGR00895       170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---------SALPEQK---ATQG--  234 (398)
T ss_pred             ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---------ccccccc---cccc--
Confidence            999999886555444 45566788887654433 223333322222211110000         0000000   0000  


Q ss_pred             cchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHH
Q 015136          256 TSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVF  335 (412)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (412)
                              ..   ....+.+++++..+.....+...+.....++....+.|.+.+           +.|.++.+.+....
T Consensus       235 --------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~  292 (398)
T TIGR00895       235 --------TK---RSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-----------ELGFSLSLAATGGA  292 (398)
T ss_pred             --------hh---hHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HcCCCHHHHHHHHH
Confidence                    00   002223344444444444555555555666666666774442           24678888889999


Q ss_pred             HHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          336 LASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       336 ~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ...++.++++++.++++||++||+...........+.+......+........++.+++.+...+...++..|.+|+
T Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  369 (398)
T TIGR00895       293 LFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT  369 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence            99999999999999999999998554444433333333333244555566677788888888899999999999884

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.8e-33  Score=266.71  Aligned_cols=333  Identities=18%  Similarity=0.208  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcch-hHH-----HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSA-ESL-----LSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIA   97 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~   97 (412)
                      +..+...+++.++++++...++...|.+.++++.+.+. .++     +.++..+++.+++++.|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34666778899999999999999999999999754432 222     247788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHH--------HHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHH
Q 015136           98 MITSGIGLLSAFSPNYIS--------LVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALA  168 (412)
Q Consensus        98 ~~~~i~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  168 (412)
                      ++++++++++++++|++.        +++.|+++|++.|.. +...++++|++|+++||++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        789999999999998 88889999999999999999999988888888888776


Q ss_pred             HHHH--------hcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCC
Q 015136          169 WIVM--------ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATS  240 (412)
Q Consensus       169 ~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
                      ..+.        .++|||+.|++.+++.++.++....+||+|++...+++.++.          +.+             
T Consensus       175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~----------~~~-------------  231 (490)
T PRK10642        175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG----------DRE-------------  231 (490)
T ss_pred             HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh----------ccc-------------
Confidence            5543        257999999998766665555566789988764322111000          000             


Q ss_pred             CCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 015136          241 RPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLT  320 (412)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (412)
                      +..       +.               +..++++++++ .++.........+.....+|+...+.|.+.++.        
T Consensus       232 ~~~-------~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--------  280 (490)
T PRK10642        232 GLQ-------DG---------------PKVSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN--------  280 (490)
T ss_pred             ccc-------cc---------------ccCCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            000       00               00033344433 223333333344455677788888888777432        


Q ss_pred             cccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HHh--hhhhHHHHHHHHHHHHHHhh
Q 015136          321 VSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILP-LAM--LQSNILITGLLVGARMFAFG  397 (412)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~-l~~--~~~~~~~~~~~~~~~~~~~~  397 (412)
                        .|.+............++.+++.++.|+++||+|||+.+..+.++..++.+. +..  ..+.....+..++.+++.+.
T Consensus       281 --~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  358 (490)
T PRK10642        281 --LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC  358 (490)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence              3566666677777778888999999999999999999888777644433322 221  22233334444555555555


Q ss_pred             HhHHHHhhccCCCCC
Q 015136          398 AFTIACIFTPEQLGW  412 (412)
Q Consensus       398 ~~~~~~~~~~e~~P~  412 (412)
                      ..+....+.+|++|+
T Consensus       359 ~~g~~~~~~~~~~p~  373 (490)
T PRK10642        359 FTGVMASTLPAMFPT  373 (490)
T ss_pred             HHHHHHHHHHHHCCC
Confidence            666777778888885

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.4e-34  Score=250.33  Aligned_cols=320  Identities=23%  Similarity=0.283  Sum_probs=252.9

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++..+..++.+.++.|..+.........+|++.+|+|+|..+.|+..|.|.+++.+++|+...+.||+.||++++....+
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556677778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      +.++.+++++++|++.++++|++.|++.|.. +...++..+..|+++|++++++...+..++..+|.+++.++.+.+|||
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR  167 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWR  167 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHH
Confidence            9999999999999999999999999999998 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          179 WLLALSSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      +.|++.+.++++..+ .+..+|  |+... +.+..+.                                           
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~~~~~-------------------------------------------  201 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP--PSEIS-GSLPGPL-------------------------------------------  201 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC--CccCC-CCCCcch-------------------------------------------
Confidence            999999988887754 466677  21000 0000000                                           


Q ss_pred             hhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHH
Q 015136          258 SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                                  .+..++++++..+.........+.   ..|....|...+..          +..|++....++.+..+
T Consensus       202 ------------~~~~~~l~~p~v~~~l~~t~l~~~---g~F~~ftYi~P~L~----------~v~g~s~~~vs~~Ll~~  256 (394)
T COG2814         202 ------------RTLLRLLRRPGVLLGLLATFLFMT---GHFALYTYIRPFLE----------SVAGFSVSAVSLVLLAF  256 (394)
T ss_pred             ------------hHHHHHhcCchHHHHHHHHHHHHc---chhhhHHhHHHHHH----------HccCCCHhHHHHHHHHH
Confidence                        012223344444444444444443   33333333433332          34579999999999999


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSN-ILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +++.++|+.++|++.|| +.|+.+.....+.++..+.+.+..+. +......++.++.............++..|
T Consensus       257 Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p  330 (394)
T COG2814         257 GIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAP  330 (394)
T ss_pred             HHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC
Confidence            99999999999999999 88888888888888888887764444 444455555665555555555555555444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.2e-33  Score=261.01  Aligned_cols=350  Identities=19%  Similarity=0.266  Sum_probs=251.8

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      .++++|+.+..++++++.++++....++..|.+.+++|.|+++.+++.+++.++..+++++.|+++||+|||++++++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 015136           99 ITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-  176 (412)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  176 (412)
                      +.+++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999988 8888999999999999999999999999999999999999988766 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcc
Q 015136          177 -WRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLL  255 (412)
Q Consensus       177 -w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (412)
                       ||+.|.+.++..++..+.....||++++..+++++++.++..++..+.   +              ... +     ...
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------~~~-~-----~~~  222 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGG---E--------------HRI-A-----NIV  222 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhcc---c--------------hhh-h-----hhh
Confidence             999998877666655555666788765332211111111111100000   0              000 0     000


Q ss_pred             cchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHH
Q 015136          256 TSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVF  335 (412)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (412)
                      +          +.....++.. .+.++.....................+.|.+.++          +.|.++.+.+....
T Consensus       223 ~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~s~~~~~~~~~  281 (405)
T TIGR00891       223 M----------TLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA----------DLGLSPHTVANIVV  281 (405)
T ss_pred             h----------hhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----------HhCCCHHHHHHHHH
Confidence            0          0000001000 1111112222222222233333444455555432          34688888899999


Q ss_pred             HHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          336 LASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLA-MLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       336 ~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ...++.++++++.|++.||+|||+.+..+..+..+....+. ...+.+...+..++.+++..+..+..+.++.|.+|+
T Consensus       282 ~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
T TIGR00891       282 FSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT  359 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc
Confidence            99999999999999999999999998887776544333322 233333444444556666666777888888888874

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.8e-33  Score=260.66  Aligned_cols=324  Identities=17%  Similarity=0.188  Sum_probs=227.3

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcC---CCcchhHHHHH---HHHHHHHHHHHHHHHHHhhhcchhHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWG---VSPSAESLLST---VVFAGNLVGVYLWGLLSDNYGRKKGF   93 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~s---~~~~~~~i~~~~~g~l~dr~Grr~~~   93 (412)
                      ++++++.+...+++.+.++++...++...|.+.++++   .+..+.+...+   ..+++..++++++|+++||+|||+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l   96 (432)
T PRK10406         17 TRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM   96 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            3455666777788899999999999999999999985   45554444444   44455559999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHH--------HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHH
Q 015136           94 LGIAMITSGIGLLSAFSPNYI--------SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFE  164 (412)
Q Consensus        94 ~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  164 (412)
                      ..+.++++++++++++++++.        .+++.|+++|++.|.. +...++++|++|+++|+++.++...+...|.+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999988764        5889999999999998 8889999999999999999999998888888888


Q ss_pred             HHHHHHHH--------hcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcccc
Q 015136          165 AALAWIVM--------ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVS  236 (412)
Q Consensus       165 ~~~~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                      +.+...+.        +.+|||+.|++.+++.++........||+|++..++      +         +           
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~------~---------~-----------  230 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA------L---------K-----------  230 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh------h---------c-----------
Confidence            87765543        257999999988877766554444556654321000      0         0           


Q ss_pred             ccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 015136          237 DATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCG  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (412)
                                                     +..+++++++.+..  ........+.....+|+...|.|.+..+.    
T Consensus       231 -------------------------------~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~~l~~~----  273 (432)
T PRK10406        231 -------------------------------EAGSLKGLWRNRRA--FIMVLGFTAAGSLCFYTFTTYMQKYLVNT----  273 (432)
T ss_pred             -------------------------------ccccHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence                                           00033344443221  12222222334566777788888776432    


Q ss_pred             cccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH--h--hhhhHHHHHHHHHHH
Q 015136          317 TTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLA--M--LQSNILITGLLVGAR  392 (412)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~~  392 (412)
                            .|.+..+.+.......+...++.++.|+++||++||+.+.++.++.++....+.  .  ..+......+..+..
T Consensus       274 ------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (432)
T PRK10406        274 ------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCAL  347 (432)
T ss_pred             ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                  467777777777777778888899999999999999888776655443332221  1  112222222222222


Q ss_pred             HHHhhHhHHHHhhccCCCCC
Q 015136          393 MFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       393 ~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +..+...+..+.+.+|.+|+
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~  367 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPA  367 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCC
Confidence            33333445677888999985

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.2e-34  Score=257.67  Aligned_cols=361  Identities=22%  Similarity=0.323  Sum_probs=261.6

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhh--------hhhhhcCC--Ccc----hhHHHHHHHHHHHHHHHHHHHHHHh
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGP--------AVKSEWGV--SPS----AESLLSTVVFAGNLVGVYLWGLLSD   85 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--s~~----~~~~~~s~~~~~~~i~~~~~g~l~d   85 (412)
                      +++.........++.+..++.....+...+        .+.+.+|.  +++    ..+.+.+++.+|.++|++..++++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555666666555554432        34455663  332    2477889999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHH
Q 015136           86 NYGRKKGFLGIAMITSGIGLLSAF---SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGS  161 (412)
Q Consensus        86 r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  161 (412)
                      |+|||..+.++.++..++.+++.+   .+++++++++|++.|+..|.. ...+.++.|..|++.||......+.+..+|.
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            999999999999988888876654   578999999999999999998 8888999999999999999999999999999


Q ss_pred             HHHHHHHHH--HHhcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhh-cCChHHHHHHHHHHHHhhCCCCCCCcccccc
Q 015136          162 IFEAALAWI--VMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNV-KGRTTEARNILDKIALLNKAKLPNGMLVSDA  238 (412)
Q Consensus       162 ~~~~~~~~~--l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (412)
                      .++..++..  +.+...|++.+....+++++.++.+.++||+|+|+.. +++++++++.++.+++.++.+.+.++...+.
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            999776543  3345569999999999999999999999999999987 8999999999999987655332222111111


Q ss_pred             CCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHH-HHHHHHHHHHHHHH-HHHHHHHhhhcccccccccc
Q 015136          239 TSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVR-TTLLLWMLFFGNSF-TYYGIILMTSKLSSTQSKCG  316 (412)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  316 (412)
                      +++..                     .+.+..+++++++++..| ...+.+...+...+ +.+....+...++.      
T Consensus       246 ~~~~~---------------------~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~------  298 (485)
T KOG0569|consen  246 EEEEL---------------------EKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK------  298 (485)
T ss_pred             HHhcc---------------------ccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH------
Confidence            11100                     001222677777754433 33344333333222 22333344444442      


Q ss_pred             cccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh---hhh---hHHH---HHH
Q 015136          317 TTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM---LQS---NILI---TGL  387 (412)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~---~~~---~~~~---~~~  387 (412)
                           +.|+++..+.+.....++..++.++++.++.||.|||++++.+..++.++.+.+..   ..+   .|..   ++.
T Consensus       299 -----~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  299 -----TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             -----HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                 34789999999999999999999999999999999999999999999998888775   111   1111   222


Q ss_pred             HH-HHHHHHhhHhHHHHhhccCCCCC
Q 015136          388 LV-GARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       388 ~~-~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+ ....+..|..|+.+.+.+|++|+
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~  399 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQ  399 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCc
Confidence            22 23334455679999999999996

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=5.1e-33  Score=265.64  Aligned_cols=325  Identities=34%  Similarity=0.589  Sum_probs=253.4

Q ss_pred             hhhhhhhhhcCCC---cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015136           46 FIGPAVKSEWGVS---PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL  122 (412)
Q Consensus        46 ~~~~~~~~~~~~s---~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  122 (412)
                      +..|.+.+|+|++   +.+.++..+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678999999999   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCC
Q 015136          123 VGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPES  201 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  201 (412)
                      .|++.+.. +...+++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.+++.+++.++..+..+++||+
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~es  266 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPES  266 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999997 8889999999999999999999999999999999998877643   9999999998888777777889999


Q ss_pred             chhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchh-h
Q 015136          202 PRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSR-L  280 (412)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  280 (412)
                      |+|+..+++.+++.+..++..+.+......+....+    .+++                 .+.+.+..+++++++.+ .
T Consensus       267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~----~~~~-----------------~~~~~~~~~~~~l~~~~~~  325 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLS----LEKD-----------------LSSSKKQYSFLDLFRTPNL  325 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhh----hhhh-----------------hhhccCCCcHHHHhCChHH
Confidence            999998998888888877776555432111000000    0000                 00000012455666544 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhH
Q 015136          281 VRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLS  360 (412)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~  360 (412)
                      ++..+..+..++.....+|+...+.+.+.               .+   ........++..+++.++.+++.||+|||+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~  387 (505)
T TIGR00898       326 RKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------------GN---IYLDLFISGLVELPAKLITLLLIDRLGRRYT  387 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccC---------------CC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            44445555566666677777666655332               22   3445556678889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          361 LTIMLILVFICILPLAMLQSN--ILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       361 l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +.++.++.+++.+++.+.++.  +......++.+++..+.++..+++.+|++|+
T Consensus       388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       388 MAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            999999888888777764433  4444555666677778889999999999985

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=8.6e-34  Score=267.56  Aligned_cols=358  Identities=15%  Similarity=0.105  Sum_probs=248.1

Q ss_pred             CCCCHHHHhhhcCCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 015136            6 HRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD   85 (412)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d   85 (412)
                      +..+.+++..+....+..+.++.++++.++..+.++..+++..|.+.+++|+|.++.|++.+.+.+++.+++++.|+++|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         10 PTLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            34445444444445566778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH
Q 015136           86 NYGRKKGFLGIAMITSGIGLLSAF-----SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL  159 (412)
Q Consensus        86 r~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  159 (412)
                      |+|||+++.++.++++++.+..+.     +++++.+++.|++.|++.+.. +...++++|++|+++||+++|+...+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999998888887777665544     689999999999999999987 88889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccc
Q 015136          160 GSIFEAALAWIVMITL---NWRWLLALSSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLV  235 (412)
Q Consensus       160 g~~~~~~~~~~l~~~~---~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
                      |.++++.+..++.+..   +||..|.+.+++.++..+ .+++.+++|+...   ..++ ++..      ++         
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---~~~~-~~~~------~~---------  230 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---WGKA-EEIF------GE---------  230 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---CCCh-hhcc------cC---------
Confidence            9999999987776643   699999888877766544 4455566654210   0000 0000      00         


Q ss_pred             cccCCCCCcccCCCCCCCcccchhhhhhhhcccccch-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 015136          236 SDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSF-LLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSK  314 (412)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (412)
                           ....+.+..++++ ....           ..+ +..++++   .++..++..++....+++...|.|.|.++.  
T Consensus       231 -----~~~~~~~~~~~~~-~~~~-----------~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~--  288 (467)
T PRK09556        231 -----PISEEDKETESTD-MTKW-----------QIFVEYVLKNP---VIWLLCFANIFLYIVRIGIDNWSPVYAFQE--  288 (467)
T ss_pred             -----ccchhhhcccccc-CcHH-----------HHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence                 0000000000000 0000           001 1122222   334445555555666677778888777443  


Q ss_pred             cccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHH
Q 015136          315 CGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLA--MLQSNILITGLLVGAR  392 (412)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~  392 (412)
                              .|++..+++.......++.+++++++|+++||++||+.+.....+..++...+.  ..++.....+..++.|
T Consensus       289 --------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  360 (467)
T PRK09556        289 --------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG  360 (467)
T ss_pred             --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                    578888888888889999999999999999999998877665444443332222  2233333434455555


Q ss_pred             HHHhhHhHHHHhhccCCCCC
Q 015136          393 MFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       393 ~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++..+........+.|.+|+
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~  380 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPK  380 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcch
Confidence            44333333334566687774

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.7e-32  Score=260.50  Aligned_cols=355  Identities=19%  Similarity=0.204  Sum_probs=246.7

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhc--------CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEW--------GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK   91 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~   91 (412)
                      .+...+..++..++.+..+++...+++..|.+.+++        +.++.+.+++.+.+.++..++++++|+++||+|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            445667777788889999999999999999898887        888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcc------------hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHH
Q 015136           92 GFLGIAMITSGIGLLSAFS------------PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWT  158 (412)
Q Consensus        92 ~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~  158 (412)
                      +++++.++.+++.+.+++.            +.++.++++|+++|++.|.. +...++++|++|+++|++++++.+.+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999999888877652            23567889999999999998 8899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--------hcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCC
Q 015136          159 LGSIFEAALAWIVM--------ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLP  230 (412)
Q Consensus       159 ~g~~~~~~~~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (412)
                      +|..+++.++..+.        +..|||+.|++.+++.++..+..+++||+|+++..+++.+++++..++....++..  
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~--  244 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT--  244 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH--
Confidence            99999988776653        35689999999888777776667789999988766666665554443322110000  


Q ss_pred             CCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 015136          231 NGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSS  310 (412)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (412)
                        .                    ..+..+....+.+.   ..+..+...............+.....++....+.|.+.+
T Consensus       245 --~--------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~  299 (479)
T PRK10077        245 --Q--------------------ALQEIKHSLDHGRK---TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK  299 (479)
T ss_pred             --H--------------------HHHHHHHHHHHhhh---hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence              0                    00000000000000   0000111000000001111112222223334445555442


Q ss_pred             cccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--hh--HHHHH
Q 015136          311 TQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--SN--ILITG  386 (412)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~~--~~~~~  386 (412)
                                 +.|.+...........++..+++.+++++++||+|||+.++.+.++.+++.+++....  +.  .....
T Consensus       300 -----------~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        300 -----------TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             -----------HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence                       2356666667777778888999999999999999999999999998888877765421  11  12222


Q ss_pred             HHHHHHHHHh-hHhHHHHhhccCCCCC
Q 015136          387 LLVGARMFAF-GAFTIACIFTPEQLGW  412 (412)
Q Consensus       387 ~~~~~~~~~~-~~~~~~~~~~~e~~P~  412 (412)
                      ..++.+++.. ...|..+++++|.+|+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~  395 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPN  395 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCCh
Confidence            2333333333 2347788999999984

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.2e-32  Score=250.11  Aligned_cols=304  Identities=16%  Similarity=0.076  Sum_probs=217.0

Q ss_pred             HhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHH
Q 015136           37 EAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISL  116 (412)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  116 (412)
                      +......+++..|.+.+|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++.+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44566788899999999999999999999999999999999999999999999987765555554443333334799999


Q ss_pred             HHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHHH
Q 015136          117 VTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV-LLLY  195 (412)
Q Consensus       117 ~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~  195 (412)
                      ++.|+++|++.+........++|++|+++|++++++.+.+..+|..++++++..+.++.|||+.|++.+++.++. ++.+
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999998655455556899999999999999999999999999999999999999999999988777665 4456


Q ss_pred             HhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhc
Q 015136          196 SLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLL  275 (412)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  275 (412)
                      +++||+|++..+  +. +.++.                                                   .++++++
T Consensus       163 ~~lp~~p~~~~~--~~-~~~~~---------------------------------------------------~~~~~~l  188 (368)
T TIGR00903       163 AALPALPFQAAE--GF-GFKDA---------------------------------------------------VKEFGAL  188 (368)
T ss_pred             HHcCCCCCCCCC--Cc-chHHH---------------------------------------------------HHHHHHH
Confidence            678887753110  00 00000                                                   0023445


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhh
Q 015136          276 FSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  355 (412)
                      ++++   ..+.....+++....+|++..|.|.|+++.           |++.. .+.......+.+.   +..++++||.
T Consensus       189 l~~~---~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-----------g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~  250 (368)
T TIGR00903       189 AGRK---DLWIIGAILGFGVALFDNLAIWLEAALRPA-----------GLEDI-AGDAVALAILAGL---IGVAVIPDRV  250 (368)
T ss_pred             HcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCChH-HHHHHHHHHHHHH---HHHHHhhHHh
Confidence            5543   335555666777788888889999988443           45543 4444444444444   4457888887


Q ss_pred             ch---hhHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          356 GR---KLSLT-IMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       356 gr---r~~l~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .|   |+... ....+.++....+....+......+..+.+++....++..+++.+|++|+
T Consensus       251 ~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  311 (368)
T TIGR00903       251 ARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK  311 (368)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch
Confidence            54   33323 23444444444444443444444555566677777778888999999996

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.2e-32  Score=255.86  Aligned_cols=337  Identities=21%  Similarity=0.266  Sum_probs=242.2

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++.++..+..+.+.++..+++.....+..|.+.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            34566677888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      .+++.++.+++++++.++++|++.|++.+.. +....++.|++|+++|+++.++...+.++|.++++.+.+.+.+..+||
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~  172 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR  172 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence            9999999999999999999999999999987 788889999999999999999999999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      +.|++..+..++........||++++..++.               ++..            + +  .+....       
T Consensus       173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~---------------~~~~------------~-~--~~~~~~-------  215 (426)
T PRK12307        173 AAFFVGLLPVLLVIYIRARAPESKEWEEAKL---------------SGKG------------K-H--SQSAWS-------  215 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCChHHHHhhh---------------hccc------------c-c--cccchh-------
Confidence            9998865443333222222344332110000               0000            0 0  000000       


Q ss_pred             hhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHH
Q 015136          259 RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLAS  338 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (412)
                              ....+++++++++..+.........+......+....+.|.+.++           .|.++...+.......
T Consensus       216 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~~  276 (426)
T PRK12307        216 --------VFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-----------EGFDTGVVSNLMTAAA  276 (426)
T ss_pred             --------hhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHH
Confidence                    000134445554444433333333333333334455566666533           3577778888888889


Q ss_pred             cchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh-hHH-HHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          339 LGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS-NIL-ITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       339 ~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.++++++.|++.||++||+.+..+.++..+..+.+..... ... .....+..++...+..+..+.++.|.+|+
T Consensus       277 ~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  352 (426)
T PRK12307        277 FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL  352 (426)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH
Confidence            999999999999999999999988888777666555543222 222 11222222222234455667777888874

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.4e-31  Score=250.16  Aligned_cols=327  Identities=16%  Similarity=0.171  Sum_probs=227.5

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhh-hhhhc--CCCcchhHHHH-----HHHHHHHHHHHHHHHHHHhhhcchhHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPA-VKSEW--GVSPSAESLLS-----TVVFAGNLVGVYLWGLLSDNYGRKKGF   93 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----s~~~~~~~i~~~~~g~l~dr~Grr~~~   93 (412)
                      ++++.+....++.+.++++...++.+.|. +.+++  +.++. .+++.     ++.+++..+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            44567777888999999999999988775 45555  67766 45554     345567789999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcchhHH--------HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHH
Q 015136           94 LGIAMITSGIGLLSAFSPNYI--------SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFE  164 (412)
Q Consensus        94 ~~~~~~~~i~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  164 (412)
                      +.+.++++++.++++++++++        .+++.|+++|++.|.. +....++.|++|+++|++..+....+..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        5888999999999998 8888999999999999999999999999999998


Q ss_pred             HHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcccc
Q 015136          165 AALAWIVMI--------TLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVS  236 (412)
Q Consensus       165 ~~~~~~l~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                      ..+...+..        .+|||+.|++.+++.++........||+|++..++++.++.+                     
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~---------------------  236 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK---------------------  236 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---------------------
Confidence            877776652        579999999888766554444445677665321110000000                     


Q ss_pred             ccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 015136          237 DATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCG  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (412)
                                   ++   .              ...+.+++.+.  .........++....+|....+.|.|.++.    
T Consensus       237 -------------~~---~--------------~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~----  280 (438)
T PRK09952        237 -------------KR---I--------------PVIEALLRHPG--AFLKIIALRLCELLTMYIVTAFALNYSTQN----  280 (438)
T ss_pred             -------------cc---C--------------CHHHHHHHchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence                         00   0              00111222221  112222233344556666667777665332    


Q ss_pred             cccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh---hhh-hHHHHHHHHHHH
Q 015136          317 TTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM---LQS-NILITGLLVGAR  392 (412)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~---~~~-~~~~~~~~~~~~  392 (412)
                            .|.+...........++..+++.++.|+++||+|||+.+..+.++..++.+.+..   ..+ ........++.+
T Consensus       281 ------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  354 (438)
T PRK09952        281 ------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLAN  354 (438)
T ss_pred             ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                  3566555444555566777888999999999999999988877666554433322   122 222233344456


Q ss_pred             HHHhhHhHHHHhhccCCCCC
Q 015136          393 MFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       393 ~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.+...+..+++.+|.+|+
T Consensus       355 ~~~~~~~~~~~~~~~e~~p~  374 (438)
T PRK09952        355 IAHDMVVCVQQPMFTEMFGA  374 (438)
T ss_pred             HHHHHHHHHHHHHHHHHCCc
Confidence            66666778888999999985

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=7.8e-32  Score=248.88  Aligned_cols=317  Identities=17%  Similarity=0.146  Sum_probs=229.3

Q ss_pred             ccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015136           21 KFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMIT  100 (412)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  100 (412)
                      +++|..+..+.+..+..........+..|.+.+++|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            34555555555555554444455566789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          101 SGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      +++.+.+.+++|++.+++.|+++|++.+.. +...+++.|++|+++|++++|+...+.++|..++|++++.+.++.|||+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~  164 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRT  164 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHH
Confidence            999999999999999999999999999887 7888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          180 LLALSSIPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      .|++.+++.++..+. ....||.|+    +++ ++.                                            
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~----~~~-~~~--------------------------------------------  195 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPS----EHS-GSL--------------------------------------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC----CCc-chH--------------------------------------------
Confidence            999998877665433 344555432    000 000                                            


Q ss_pred             hhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHH
Q 015136          259 RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLAS  338 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (412)
                                 ++.++.++++..+.....   .+......+....+.+.+.++          ..|.++.+.+.......
T Consensus       196 -----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~----------~~g~s~~~~~~~~~~~~  251 (390)
T PRK03545        196 -----------KSLPLLFRRPALVSLYLL---TVVVVTAHFTAYSYIEPFVQQ----------VAGLSENFATLLLLLFG  251 (390)
T ss_pred             -----------HHHHHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------hcCCCccHHHHHHHHHH
Confidence                       012223333332222222   122222333333344444322          24688888899999999


Q ss_pred             cchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          339 LGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPL-AMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       339 ~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +++++++++.|++.||++||.... +..+..++...+ ...++.+...+..++.+++.....+.......|..|
T Consensus       252 ~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  324 (390)
T PRK03545        252 GAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP  324 (390)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC
Confidence            999999999999999999886544 444444444333 334444555556666666665555555566655554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.7e-31  Score=253.39  Aligned_cols=366  Identities=17%  Similarity=0.110  Sum_probs=256.4

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      ++|.++..++++.+....+..+.+...|.+.+++|.+.++.+|+.+.+.+++.++.++.|+++||+|||++++.+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          102 GIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFV-PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       102 i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      ++.+++++++|++.++++|+++|+|.+.. +.....+.+.+ |+++|++++|+......+|..+||.+++.+.++.+||+
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~  162 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS  162 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence            99999999999999999999999999887 76666676665 67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHH------HHHHHhhCCCCCCCccccccCCCCCcccCCC-CC
Q 015136          180 LLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNIL------DKIALLNKAKLPNGMLVSDATSRPDEELAPP-DN  251 (412)
Q Consensus       180 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  251 (412)
                      .|++...+.++.. +..+++||+++..  +++.+......      ......+.........        ....... ..
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~  232 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSL--------WVTSLTLLTG  232 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCch--------HHHHHHHHHH
Confidence            9999876666553 4456677765321  11111111000      0000000000000000        0000000 00


Q ss_pred             CCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchH
Q 015136          252 TPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLY  331 (412)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (412)
                      .........+|.+.+.+..+++ +++++..   .......+.....+++...+.|.++++.          .|.++.+++
T Consensus       233 ~~~l~~f~~~e~~~~~p~~~~~-lf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lq~v----------~g~s~~~ag  298 (495)
T PRK14995        233 ALLLGLFIRTQLAASRPMIDMR-LFTHRII---LSGVVMAMTAMITLVGFELLMAQELQFV----------HGLSPLEAG  298 (495)
T ss_pred             HHHHHHHHHHHhcCCCCCcCHH-HhCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCCHHHHH
Confidence            0000000001111222222333 3333322   2223333334445556666667665433          478999999


Q ss_pred             HHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHhhHhHHHHhhccC
Q 015136          332 LSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML---QSNILITGLLVGARMFAFGAFTIACIFTPE  408 (412)
Q Consensus       332 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  408 (412)
                      ....+..++..++.++.|++.||+|+|+.+..+.++.+++.+++...   .+.+......++.|++.+...+.......+
T Consensus       299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~  378 (495)
T PRK14995        299 MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA  378 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888888877777665432   233444556777788777777766666666


Q ss_pred             CCC
Q 015136          409 QLG  411 (412)
Q Consensus       409 ~~P  411 (412)
                      ..|
T Consensus       379 ~~~  381 (495)
T PRK14995        379 AAP  381 (495)
T ss_pred             cCC
Confidence            555

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2.7e-31  Score=245.42  Aligned_cols=319  Identities=13%  Similarity=0.114  Sum_probs=245.4

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      ++++....+++..+..+......+...|.+.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45566667778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHH
Q 015136          102 GIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-TLNWRW  179 (412)
Q Consensus       102 i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~  179 (412)
                      ++.+++.++++++.+++.|++.|++.+.. +...+++.|++|+++|+++++..+....+|..++|.+.+.+.+ ..+||+
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999887 7788899999999999999999999999999999999888764 579999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchh
Q 015136          180 LLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSR  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (412)
                      .|.+.+++.++..+..++ .+.|+..  +++.                           +++     ++           
T Consensus       164 ~f~~~~~~~~~~~~~~~~-~~~p~~~--~~~~---------------------------~~~-----~~-----------  197 (394)
T PRK03699        164 VYACIGLVYVAIFILTLF-SEFPALG--KHAP---------------------------KAD-----KP-----------  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCcccc--ccCc---------------------------ccc-----Cc-----------
Confidence            999888776655443333 2222100  0000                           000     00           


Q ss_pred             hhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHc
Q 015136          260 IRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASL  339 (412)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (412)
                                 ..+..++    +..+......++....++....|.|.|.++.          .|+++.+.+.......+
T Consensus       198 -----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~~~~~~~~~  252 (394)
T PRK03699        198 -----------VAKEKWG----IGVLFLAIAALLYILAQLTFISWVPEYAQKK----------FGMSLEDAGNLVSNFWM  252 (394)
T ss_pred             -----------cccccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChHHhhHHHHHHHH
Confidence                       0000001    2233344444445556677778888777433          47888889999999999


Q ss_pred             chhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          340 GELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       340 ~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +..+++++.|+++||++||+.+.....+.++...++...++.....+..++.+++.++.++...++..|..|
T Consensus       253 ~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  324 (394)
T PRK03699        253 AYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK  324 (394)
T ss_pred             HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999888777777766666555555555556667777777777777766666544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.5e-32  Score=259.59  Aligned_cols=362  Identities=22%  Similarity=0.294  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCC--------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVS--------PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLG   95 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~   95 (412)
                      +....++.++.+...++...++...+.+.++++.+        ..+.+++.+++.++..+++++.|+++||+|||+++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33444455566667778888888899998888877        8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHH---
Q 015136           96 IAMITSGIGLLSAFS---PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALA---  168 (412)
Q Consensus        96 ~~~~~~i~~~~~~~~---~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---  168 (412)
                      +.++.+++.+++...   .+++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888543   34568999999999999988 88889999999999999999999999999999999998   


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCC
Q 015136          169 WIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAP  248 (412)
Q Consensus       169 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                      ....+..+||+.|++.++..++..+..+++||+|++...+++.++..+..++....+.   +.......    .+.    
T Consensus       187 ~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~----  255 (481)
T TIGR00879       187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG---EDKELLDE----LEL----  255 (481)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC---CcHHHHHH----HHH----
Confidence            6665678999999997776666666677889998876555554443333222211100   00000000    000    


Q ss_pred             CCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCc
Q 015136          249 PDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDS  328 (412)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (412)
                           .........+..+....+..+..++...+..+...+..+...........+.+.+..           +.|++..
T Consensus       256 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~~  319 (481)
T TIGR00879       256 -----IDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-----------NAGVSTD  319 (481)
T ss_pred             -----HHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-----------HcCCCch
Confidence                 000000000000011112222222212223333333333333333344445554442           3467777


Q ss_pred             chHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh-----hhh-----hHH-HHHHHHHHHHHHhh
Q 015136          329 SLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM-----LQS-----NIL-ITGLLVGARMFAFG  397 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~-----~~~-----~~~-~~~~~~~~~~~~~~  397 (412)
                      ..+.......++.+++++++|+++||+|||+.+.++.++.+++.+.+.+     ..+     ... .....++.++...+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (481)
T TIGR00879       320 HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMG  399 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHcc
Confidence            7888888889999999999999999999999999888888777776652     110     222 22222223333333


Q ss_pred             HhHHHHhhccCCCCC
Q 015136          398 AFTIACIFTPEQLGW  412 (412)
Q Consensus       398 ~~~~~~~~~~e~~P~  412 (412)
                      ..+....++.|.+|+
T Consensus       400 ~~~~~~~~~~~~~p~  414 (481)
T TIGR00879       400 WGPVPWVIVSEIFPL  414 (481)
T ss_pred             ccCeehhhhhccCCh
Confidence            446677788888874

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=2.5e-31  Score=248.51  Aligned_cols=285  Identities=17%  Similarity=0.171  Sum_probs=214.4

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++.++.+....++.++...++...++...|.+.+++|+|+++.|++.+.+.+++.+++++.|+++||+|||+++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            34555666777788888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      .+++.++++++++++.+++.|++.|++.|.. +...+++.|++|+++|++++++.+.+.++|..+++.+.+.+.+.+|||
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence            9999999999999999999999999999887 778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          179 WLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      +.|++.+++.++. ++..++++|+|++.......++.+                +      .++.+++  ..+  +..  
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------------~------~~~~~~~--~~~--~~~--  229 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------------D------ALELAQQ--QEG--AGL--  229 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------------c------ccccchh--ccc--cCC--
Confidence            9999988776654 344556777664221000000000                0      0000000  000  000  


Q ss_pred             hhhhhhhhcccccc-hh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHH
Q 015136          258 SRIRITKLKSGFSS-FL-LLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVF  335 (412)
Q Consensus       258 ~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (412)
                                +.++ ++ ..++++   ..+......+.....+++...|.|.|.++.          .|++..+++....
T Consensus       230 ----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~a~~~~~  286 (434)
T PRK11663        230 ----------SRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYMSET----------LGVDLVTANSAVS  286 (434)
T ss_pred             ----------ChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCHHHHHHHHH
Confidence                      0000 00 112222   233333334444455566667777776332          4788888899999


Q ss_pred             HHHcchhhHHHHHHHHHHhh
Q 015136          336 LASLGELPGLVLAGIIVDRA  355 (412)
Q Consensus       336 ~~~~~~~~g~~~~g~l~dr~  355 (412)
                      ...+++++++++.|+++||+
T Consensus       287 ~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        287 MFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHhhhHHHh
Confidence            99999999999999999998

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=8.6e-31  Score=244.99  Aligned_cols=323  Identities=18%  Similarity=0.240  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHH-HHHH-----HHHHHHHHHHHHHHHhhhcchhHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLL-STVV-----FAGNLVGVYLWGLLSDNYGRKKGFLGI   96 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~~~~i~~~~~g~l~dr~Grr~~~~~~   96 (412)
                      |++....++++.+.+++|+..+++..|.+.++++.++.+.+.. .+..     .++..+++++.|+++||+|||+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            4556888889999999999999999999999999988876544 3322     222347899999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhHHH--------HHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHH
Q 015136           97 AMITSGIGLLSAFSPNYIS--------LVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAAL  167 (412)
Q Consensus        97 ~~~~~i~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  167 (412)
                      .++.+++.++++++++++.        ++++|+++|++.+.. +....+++|++|+++|++++++.....++|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998773        688999999999987 7778899999999999999999999988888888888


Q ss_pred             HHHHH--------hcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccC
Q 015136          168 AWIVM--------ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT  239 (412)
Q Consensus       168 ~~~l~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      ++.+.        +.+|||+.|++..+...+........||++++..         +        +.+.           
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~---------~--------~~~~-----------  224 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLA---------R--------KHRP-----------  224 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---------h--------hhcc-----------
Confidence            77763        5689999998754432222211111222211000         0        0000           


Q ss_pred             CCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 015136          240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTL  319 (412)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (412)
                                +..                 ..++...+.  ++.........+.....++....+.|.|.++.       
T Consensus       225 ----------~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-------  268 (434)
T PRK15075        225 ----------SMR-----------------EIFRSLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-------  268 (434)
T ss_pred             ----------ccc-----------------cHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence                      000                 011111111  12222223333344556677778888777432       


Q ss_pred             ccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHHh---hhhhHHHHHHHHHHHHHH
Q 015136          320 TVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICIL-PLAM---LQSNILITGLLVGARMFA  395 (412)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~-~l~~---~~~~~~~~~~~~~~~~~~  395 (412)
                         .|.+..+.++......+++++++++.|+++||+|||+.+..+..+..+... .+..   .++.........+.+++.
T Consensus       269 ---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (434)
T PRK15075        269 ---LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLY  345 (434)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence               467777888888888899999999999999999999988776554433222 1111   112222222234445555


Q ss_pred             hhHhHHHHhhccCCCCC
Q 015136          396 FGAFTIACIFTPEQLGW  412 (412)
Q Consensus       396 ~~~~~~~~~~~~e~~P~  412 (412)
                      +...+....+..|.+|+
T Consensus       346 g~~~~~~~~~~~e~~p~  362 (434)
T PRK15075        346 GSYNGAMVVALTEVMPA  362 (434)
T ss_pred             HHHHhhHHHHHHHHCCC
Confidence            55566667788888874

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.2e-30  Score=238.66  Aligned_cols=317  Identities=12%  Similarity=0.109  Sum_probs=227.8

Q ss_pred             ccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015136           21 KFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMIT  100 (412)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  100 (412)
                      |..|+.+..+.+..+.............|.+.+++|.++++.++..+.+.++..+++++.|+++||+|||++++.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            33566555555555555555556666789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          101 SGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       101 ~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      +++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|++++++...+.++|..++|++++.+.+.+|||+
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~  175 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRN  175 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            999999999999999999999999999988 8888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          180 LLALSSIPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      .|++.+++.++..+. ....||+|+.    ++. + .                                           
T Consensus       176 ~f~~~~~l~~~~~l~~~~~~p~~~~~----~~~-~-~-------------------------------------------  206 (394)
T PRK10213        176 VFNAAAVMGVLCIFWIIKSLPSLPGE----PSH-Q-K-------------------------------------------  206 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCcc----ccc-c-h-------------------------------------------
Confidence            999987766554333 3335554310    000 0 0                                           


Q ss_pred             hhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccccccccccccCCCCcchHHHHHHH
Q 015136          259 RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT-SKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                                 .+.++.++++..+.....   .+......++...+. |.+.           ++.|+++...+......
T Consensus       207 -----------~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~-----------~~~g~s~~~~g~~~~~~  261 (394)
T PRK10213        207 -----------QNTFRLLQRPGVMAGMIA---IFMSFAGQFAFFTYIRPVYM-----------NLAGFGVDGLTLVLLSF  261 (394)
T ss_pred             -----------hHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HhcCCChhHHHHHHHHH
Confidence                       011122333322222222   222222233333333 4443           23468888889999999


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +++.++++++.+++.||.+++..............++....++.+......++.|++.+...+...+++.+..|
T Consensus       262 ~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  335 (394)
T PRK10213        262 GIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA  335 (394)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc
Confidence            99999999999999999654433443333333333333344455555556667777777667766666655544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.2e-30  Score=245.97  Aligned_cols=332  Identities=13%  Similarity=0.088  Sum_probs=227.9

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      .++++++.+...++..+.........++..|.+.+++|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~  109 (476)
T PLN00028         30 FARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLM  109 (476)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            44555666777777777777878888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH----hc
Q 015136           99 ITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM----IT  174 (412)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----~~  174 (412)
                      +++++.++++++++++.+++.|++.|++.+.......+++|++|+++||+++++.....++|..+++.+.+.+.    +.
T Consensus       110 ~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        110 LTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998765334567889999999999999998877778777766665443    22


Q ss_pred             -----CChHHHHHHHHHHHHHHHHHHHhccCC-chhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCC
Q 015136          175 -----LNWRWLLALSSIPSFAVLLLYSLAPES-PRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAP  248 (412)
Q Consensus       175 -----~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (412)
                           .|||+.|++.+++.++..+..++++++ |+     ++.++.++         +.               +     
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~---------~~---------------~-----  235 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK---------SG---------------T-----  235 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh---------cC---------------c-----
Confidence                 489999999988877665554444432 21     10000000         00               0     


Q ss_pred             CCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCc
Q 015136          249 PDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDS  328 (412)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (412)
                       .+++  .           ....+++.++.+.   ++..+..++......+....+.|.|..+          +.|+++.
T Consensus       236 -~~~~--~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l~~----------~~g~s~~  288 (476)
T PLN00028        236 -MPKD--S-----------FSKVLRYGVTNYR---TWILALTYGYSFGVELTMDNIIAEYFYD----------RFGLSLE  288 (476)
T ss_pred             -cccc--c-----------HHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHhHHHHHHHH----------hcCCCHH
Confidence             0000  0           0002222223222   2233333333334444455566655532          2478888


Q ss_pred             chHHHHHHHHcchhhHHHHHHHHHHhhchh-------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHH
Q 015136          329 SLYLSVFLASLGELPGLVLAGIIVDRAGRK-------LSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTI  401 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr-------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (412)
                      +++....+..++++++++++|+++||++||       ....+..++.+++.+.+....+.+...+.+++.+++.....+.
T Consensus       289 ~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  368 (476)
T PLN00028        289 TAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGA  368 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhh
Confidence            899999999999999999999999999865       2233333333333343333444444444455555555555666


Q ss_pred             HHhhccCCCC
Q 015136          402 ACIFTPEQLG  411 (412)
Q Consensus       402 ~~~~~~e~~P  411 (412)
                      .+++.+|+.|
T Consensus       369 ~~~~~~~~~~  378 (476)
T PLN00028        369 TFGIVPFVSR  378 (476)
T ss_pred             hcccCcccCh
Confidence            6666666654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.98  E-value=1.9e-30  Score=246.86  Aligned_cols=358  Identities=23%  Similarity=0.305  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHHhhH--HHhhhhhhhhhhhhcC-----CCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 015136           24 YLVFAYAGLAVFAEAME--IMILSFIGPAVKSEWG-----VSP--SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFL   94 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~   94 (412)
                      ........+..+..+.+  ....+.....+.++..     .+.  .+.+++.+...++..+++++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33344444444444443  3445555556655332     122  34589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136           95 GIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus        95 ~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      ++.+++.++.+++++++|+++++++|++.|+|.|.. .+.+.+++|..|++.||...+..+....+|..++..++....+
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999999999999998 8889999999999999999999999999999999655555543


Q ss_pred             c-CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          174 T-LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       174 ~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                      . .+||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++.+.++.+.+.+.  .+...+..         
T Consensus       204 ~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~--~~~~~~~~---------  272 (513)
T KOG0254|consen  204 VYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVEL--ELLKIKLL---------  272 (513)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHH--HHHHHHHH---------
Confidence            3 48999999999998888777889999999999999999999999988764311111000  00000000         


Q ss_pred             CcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHH-HHHHHhhhcccccccccccccccccCCCCcchH
Q 015136          253 PLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTY-YGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLY  331 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (412)
                              .+.........+++++++...++....+....+..++. ....++.+.+++..           |.+... .
T Consensus       273 --------~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-----------g~~~~~-~  332 (513)
T KOG0254|consen  273 --------VEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-----------GLKSDT-F  332 (513)
T ss_pred             --------HhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-----------CCCCch-H
Confidence                    00000000013445555555565655555555444433 33445555555333           343332 6


Q ss_pred             HHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh-------------hHHHHHHHHHHHHHHhhH
Q 015136          332 LSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS-------------NILITGLLVGARMFAFGA  398 (412)
Q Consensus       332 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~  398 (412)
                      ....+.++..+++..++.++.||+|||++++.+...+.++.+++.....             ...+...++....+..+.
T Consensus       333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~  412 (513)
T KOG0254|consen  333 LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW  412 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc
Confidence            6677778889999999999999999999999999999999988875211             112233344445556667


Q ss_pred             hHHHHhhccCCCCC
Q 015136          399 FTIACIFTPEQLGW  412 (412)
Q Consensus       399 ~~~~~~~~~e~~P~  412 (412)
                      .++.+.+.+|++|.
T Consensus       413 g~v~w~~~sEifp~  426 (513)
T KOG0254|consen  413 GPVPWVIVSEIFPL  426 (513)
T ss_pred             ccchhhhhhccCcH
Confidence            78999999999984

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.98  E-value=4.8e-30  Score=244.77  Aligned_cols=357  Identities=17%  Similarity=0.253  Sum_probs=240.2

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++++|+.+..++++.+...++....++..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.++.+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45677888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      .+++.++.+++++++.+++.|++.|++.+.. +....++.|.+|+++|++++++...+..+|..+++.+.+.+.++.+||
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999999999999999999999999998887 778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      +.|.+..+..++.++.....||++++..++++.++.++..+.....+                          .......
T Consensus       175 ~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~  228 (496)
T PRK03893        175 ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGE--------------------------HRIINIL  228 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcch--------------------------hHHHHHH
Confidence            99987555444434444455665443211111100000000000000                          0000000


Q ss_pred             hhh------hhhhc-ccccch----------------hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 015136          259 RIR------ITKLK-SGFSSF----------------LLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKC  315 (412)
Q Consensus       259 ~~~------~~~~~-~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (412)
                      ...      ..... .....+                ....+.+.++.........+......+....+.|.|.++    
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~----  304 (496)
T PRK03893        229 LTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT----  304 (496)
T ss_pred             HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh----
Confidence            000      00000 000000                000000000111111111111111222344566666532    


Q ss_pred             ccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHH
Q 015136          316 GTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--SNILITGLLVGARM  393 (412)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~  393 (412)
                            +.|.+..+.+...+...++.++++++.|++.||+|||+.+..+..+..+..+.+....  ..+......++.++
T Consensus       305 ------~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        305 ------DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             ------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence                  3468888999999999999999999999999999999998887766665554443322  22222233333333


Q ss_pred             HHhhHhHHHHhhccCCCCC
Q 015136          394 FAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       394 ~~~~~~~~~~~~~~e~~P~  412 (412)
                      ...+..+..++++.|.+|+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~  397 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDT  397 (496)
T ss_pred             HhcccchhhHHHHHhhCCH
Confidence            3334456667777787763

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.98  E-value=1.5e-29  Score=233.70  Aligned_cols=311  Identities=21%  Similarity=0.258  Sum_probs=234.4

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhH
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNY  113 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  113 (412)
                      .+....+.....+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+++.++...++++
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   93 (385)
T TIGR00710        14 SILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI   93 (385)
T ss_pred             HHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            45556677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~  192 (412)
                      +.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+||+.|++.++..++..
T Consensus        94 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLS  173 (385)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            99999999999999988 88889999999999999999999999999999999999999999999999998887666554


Q ss_pred             HH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccc
Q 015136          193 LL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSS  271 (412)
Q Consensus       193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (412)
                      +. .++.||+++...   + ++.++.                                                   .++
T Consensus       174 ~~~~~~~~~~~~~~~---~-~~~~~~---------------------------------------------------~~~  198 (385)
T TIGR00710       174 ALIFFILPETLPYEA---R-IQISTY---------------------------------------------------FET  198 (385)
T ss_pred             HHHHHhCCCCCCCcc---c-CCHHHH---------------------------------------------------HHH
Confidence            43 445565532110   0 000000                                                   002


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHH
Q 015136          272 FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGII  351 (412)
Q Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l  351 (412)
                      +++.++++..+...   +........++....+.|.+..          ++.|.++.+.+.......++.++++++.|++
T Consensus       199 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l  265 (385)
T TIGR00710       199 FLLLLKSKMFWGYA---LIYGASFGGFFAFFSGAPFVYI----------DIMGVSPSVFGLLFALNIIAMIFGGFLNGRF  265 (385)
T ss_pred             HHHHHcCchhHHHH---HHHHHHHHHHHHHHHcChHHHH----------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233333222222   1222222333444444454442          2346888888999999999999999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          352 VDRAGRKLSLTIMLILVFICILPLAMLQ-----SNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       352 ~dr~grr~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .||+++|+.+..+..+..++.+.+....     ..........+.+++.+...+....+..|..|+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  331 (385)
T TIGR00710       266 IKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH  331 (385)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            9999999998888777777666555421     222333445566677777788888888887763

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.98  E-value=7.8e-30  Score=235.27  Aligned_cols=311  Identities=14%  Similarity=0.135  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSG  102 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  102 (412)
                      .|.....++++.+.... ....++..|.+.+|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            34444444444444333 36778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHH
Q 015136          103 IGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWL  180 (412)
Q Consensus       103 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~  180 (412)
                      +.+++++++|++.++++|+++|++.+.. +....++.+++| ++|+++++++..+..+|..+++.+++.+.++. +||+.
T Consensus        87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~  165 (393)
T PRK09705         87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT  165 (393)
T ss_pred             HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999987 777778888886 88999999999999999999999999998875 89998


Q ss_pred             HHHHHHHHHHHHHHHHhccC-CchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchh
Q 015136          181 LALSSIPSFAVLLLYSLAPE-SPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSR  259 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (412)
                      +.+.++..++..+.++...+ .|+     +++                            +  +   +  .         
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----------------------------~--~---~--~---------  196 (393)
T PRK09705        166 LAWWALPAVVALFAWWWQSAREVA-----SSH----------------------------K--T---T--T---------  196 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc-----ccc----------------------------C--C---C--c---------
Confidence            87766654444333322211 110     000                            0  0   0  0         


Q ss_pred             hhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHc
Q 015136          260 IRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASL  339 (412)
Q Consensus       260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (412)
                                 +.++.++++   ..+......+.....+++...+.|.+..+           .|.+..+.+.......+
T Consensus       197 -----------~~~~~l~~~---~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-----------~g~s~~~ag~~~~~~~i  251 (393)
T PRK09705        197 -----------TPVRVVFTP---RAWTLGVYFGLINGGYASLIAWLPAFYIE-----------IGASAQYSGSLLALMTL  251 (393)
T ss_pred             -----------CCcccccCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCChhhhhHHHHHHHH
Confidence                       001111122   22223333444456667777788877633           46888889999999999


Q ss_pred             chhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          340 GELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       340 ~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      +.++++++.+++.||++||+.+.++..+..++.+++...+..... ....+.+++.+..++.......+.+
T Consensus       252 ~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~  321 (393)
T PRK09705        252 GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-LWAMVCGLGLGGAFPLCLLLALDHS  321 (393)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHhccchHHHHHHHHHhhc
Confidence            999999999999999999999888887777776655432222111 2233456666666676665555554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.98  E-value=1.1e-30  Score=240.34  Aligned_cols=308  Identities=18%  Similarity=0.177  Sum_probs=222.6

Q ss_pred             HhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHH
Q 015136           37 EAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISL  116 (412)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  116 (412)
                      .....+..++..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL   94 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33346678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-
Q 015136          117 VTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-  194 (412)
Q Consensus       117 ~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-  194 (412)
                      ++.|++.|++.+.. +.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..+||+.|++.+++.++..+. 
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999876 666667778876 689999999999999999888777777778889999999998877766444 


Q ss_pred             HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhh
Q 015136          195 YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLL  274 (412)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (412)
                      +++++++|+... +++.                             +.    +  ++                 ..+.++
T Consensus       174 ~~~~~~~~~~~~-~~~~-----------------------------~~----~--~~-----------------~~~~~~  200 (377)
T TIGR00890       174 AFLIGYPPGQLI-KTNI-----------------------------EV----S--VK-----------------DYTVWE  200 (377)
T ss_pred             HHheecCchhcc-ccCc-----------------------------cc----c--hh-----------------hhhHHH
Confidence            444544332100 0000                             00    0  00                 001222


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHh
Q 015136          275 LFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDR  354 (412)
Q Consensus       275 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr  354 (412)
                      .++++..+.....   .+...........+.+.+.+           +.+.++.+.+.......++.++++++.|++.||
T Consensus       201 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr  266 (377)
T TIGR00890       201 MLRTPQFWVLYLS---FFLNAVSGLLLIGLYKPYGQ-----------SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK  266 (377)
T ss_pred             HHcCccHHHHHHH---HHHHhHHHHHHHHHHHHHHH-----------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322222222   22222222222223333332           235677778888888999999999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          355 AGRKLSLTIMLILVFICILPLAMLQSN--ILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       355 ~grr~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++||+.+.++..+.+++.+.+.+.++.  .......++.+++.+...+..+.+.+|.+|+
T Consensus       267 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  326 (377)
T TIGR00890       267 IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP  326 (377)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhh
Confidence            999999999888888887776654432  2233334555666666667777778887763

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1e-29  Score=241.98  Aligned_cols=355  Identities=17%  Similarity=0.169  Sum_probs=252.0

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG  104 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  104 (412)
                      +++..++++.+...++....++..|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            34566778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          105 LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       105 ~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      ++++.++|++.+++.|+++|++.+.. +...+++.|++|+++|+++.+++.....+|..++|.+++.+.++.+||+.|++
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            99999999999999999999999988 88889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHH------HHHHhhCCCCCCCccccccCCCCCcccCCCCCCCccc
Q 015136          184 SSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILD------KIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLT  256 (412)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (412)
                      .+.+.++..+ ..++.||+++.  ++++.+.......      .....+..+..                ...+......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~  223 (485)
T TIGR00711       162 NVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPER----------------GWFDSNEILI  223 (485)
T ss_pred             hhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCC----------------CCCCchHHHH
Confidence            8877665543 34556664331  1111111111000      00000000000                0000000000


Q ss_pred             ----------chhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCC
Q 015136          257 ----------SSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMH  326 (412)
Q Consensus       257 ----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (412)
                                ....++.+.+++..+.+ +++.+..+   ......+...+.+++...+.|.|.++.          .|.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~----------~g~s  289 (485)
T TIGR00711       224 LSITGLVAIIAFVVWELTDDNPLVDLR-LFKYRNFT---IGCVYMSLLGLGLYGSFYLLPLYLQQV----------LGYT  289 (485)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccCHH-HHcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCC
Confidence                      00001111112222222 22322222   223333334455556666677666433          4788


Q ss_pred             CcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHhhHhHHH
Q 015136          327 DSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM----LQSNILITGLLVGARMFAFGAFTIA  402 (412)
Q Consensus       327 ~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~  402 (412)
                      +.+.+....+..++.++++++.|++.||+|||+.+.++..+.+++.+.+.+    ..+.+......++.+++.+..++..
T Consensus       290 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~  369 (485)
T TIGR00711       290 ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPL  369 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999998888888777662    1223344455666777777666555


Q ss_pred             HhhccCCCC
Q 015136          403 CIFTPEQLG  411 (412)
Q Consensus       403 ~~~~~e~~P  411 (412)
                      .....+..|
T Consensus       370 ~~~~~~~~~  378 (485)
T TIGR00711       370 TTIALSGLP  378 (485)
T ss_pred             HHHHHhcCC
Confidence            555555555

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=1.5e-30  Score=241.22  Aligned_cols=331  Identities=19%  Similarity=0.206  Sum_probs=229.7

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhH
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNY  113 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  113 (412)
                      ++....+...++...|.+.+++|.|+.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            34566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~  192 (412)
                      +.+++.|++.|++.+.. +....++.|++|+++|++++++.+...++|..+++.+++.+.+..+||+.|++.+++.++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999988 88889999999999999999999999999999999999999999999999999887776654


Q ss_pred             HH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccc
Q 015136          193 LL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSS  271 (412)
Q Consensus       193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (412)
                      +. .++.+|+|+...  ...++.++...+   ..             ..+.+.+.+  +               +....+
T Consensus       163 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~-------------~~~~~~~~~--~---------------~~~~~~  207 (399)
T TIGR00893       163 VLWLKFIPDPPQKAK--WLTEEEKYIVVG---GL-------------LAEQQGKGP--S---------------TPKKYQ  207 (399)
T ss_pred             HHhhheecCCCCccc--cCCHHHHhhcch---hh-------------ccccccccc--c---------------CCCccc
Confidence            44 444566543111  111111000000   00             000000000  0               000012


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHH
Q 015136          272 FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGII  351 (412)
Q Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l  351 (412)
                      .++.++++   ..+......+...........+.|.+.++.          .|.++.+.+.......++.++++++.|++
T Consensus       208 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  274 (399)
T TIGR00893       208 IKELLKDR---RVWGLALGQFLVNIGLGFFLTWFPTYLVQE----------RGLSILEAGFMASLPGIVGFIGMILGGRL  274 (399)
T ss_pred             hHHHhcCH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hcccHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333   233334444444555556666667665332          36777888888889999999999999999


Q ss_pred             HHhhchhh--HHHHHHHH--HH--HHHHHHHhh-hhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          352 VDRAGRKL--SLTIMLIL--VF--ICILPLAML-QSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       352 ~dr~grr~--~l~~~~~~--~~--~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .||++||+  ........  ..  .+...+... .+.....+.....+.+..+..+...++.+|.+|+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (399)
T TIGR00893       275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPG  342 (399)
T ss_pred             HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcCh
Confidence            99999885  11111111  11  111111111 1122223333333434444788899999998874

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2.4e-29  Score=234.33  Aligned_cols=325  Identities=14%  Similarity=0.092  Sum_probs=233.7

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++.....+..+.+.++..++.....++..|.+++++|+|+++.++..+.+.+++.+++++.|++.||+|||+++..+..+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34456666777788888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh---hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 015136          100 TSGIGLLS---AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-T  174 (412)
Q Consensus       100 ~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~  174 (412)
                      .+++.+++   ..+++++.++++|+++|+|.|.. +...+++.|+.|+++|.+.+++.+..+.+|..+++.++..+.. .
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~  180 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999775   46889999999999999999998 7888888888777777778999999999999999999876541 0


Q ss_pred             -------------------------CChHHHHHHHH-HHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCC
Q 015136          175 -------------------------LNWRWLLALSS-IPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKA  227 (412)
Q Consensus       175 -------------------------~~w~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
                                               .+||+.|+... +..++..+. ....||.+.     ++.++.+            
T Consensus       181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~~------------  243 (438)
T PRK10133        181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDAK------------  243 (438)
T ss_pred             CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccccccc------------
Confidence                                     24566665433 322222222 222333211     0000000            


Q ss_pred             CCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015136          228 KLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (412)
                                             .              ++...+.+++++++..+...+..   ++.....++...|.+.
T Consensus       244 -----------------------~--------------~~~~~~~~~ll~~~~~~~~~l~~---~~~~~~~~~~~~~~~~  283 (438)
T PRK10133        244 -----------------------Q--------------GSFSASLSRLARIRHWRWAVLAQ---FCYVGAQTACWSYLIR  283 (438)
T ss_pred             -----------------------c--------------cchhhhHHHHHhCchHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence                                   0              00000223344444333222222   2222333333344444


Q ss_pred             ccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 015136          308 LSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGL  387 (412)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  387 (412)
                      |..         .+..|.++.+.+.......++.++|+++++++.||+|+|+++..+..+..+.+++..+.++. .....
T Consensus       284 ~l~---------~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~  353 (438)
T PRK10133        284 YAV---------EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIA  353 (438)
T ss_pred             HHh---------hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHH
Confidence            421         12257999999999999999999999999999999999999888877776666555544433 33455


Q ss_pred             HHHHHHHHhhHhHHHHhhccCCCC
Q 015136          388 LVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ..+.+++.+..+|..++...|.+|
T Consensus       354 ~~l~glg~~~i~P~~~s~a~~~~~  377 (438)
T PRK10133        354 LTLCSAFMSIQYPTIFSLGIKNLG  377 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccc
Confidence            677888999999999998888776

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=2.7e-30  Score=235.64  Aligned_cols=321  Identities=26%  Similarity=0.343  Sum_probs=240.8

Q ss_pred             HHHHHHHhhHHHhhhhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 015136           31 GLAVFAEAMEIMILSFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  109 (412)
                      +++.+....+.....+..| .+.+++|.|+++.+++.+++.++..+++++.|+++||+|||++++.+.++.+++..+..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            4566777778888888899 899999999999999999999999999999999999999999999999999999666666


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      +++.+.+++.|++.|++.+.. +...+++.|++|+++|++++++.....++|..++|.+++.+.+..+||+.|++.+++.
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~  161 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS  161 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence            688889999999999999888 8889999999999999999999999999999999999999998899999999999888


Q ss_pred             HHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcc
Q 015136          189 FAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKS  267 (412)
Q Consensus       189 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (412)
                      ++..++ ..+.+++++....+++.++.                                                ++.++
T Consensus       162 ~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~  193 (352)
T PF07690_consen  162 LIAAILFILFLPEPPPPRERESPKESE------------------------------------------------SKKPK  193 (352)
T ss_dssp             HHHHHHHHCCC---STTTT--SSTTTT--------------------------------------------------HHH
T ss_pred             hhhhhhHhhhhhhcccccccccccccc------------------------------------------------ccccc
Confidence            877553 34455443311111110000                                                00001


Q ss_pred             cccc-hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCC-CcchHHHHHHHHcchhhHH
Q 015136          268 GFSS-FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMH-DSSLYLSVFLASLGELPGL  345 (412)
Q Consensus       268 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  345 (412)
                      +..+ ++.+++++..+   ......+...+.++....+.|.|..          +..|.+ ..+.+.......+..++++
T Consensus       194 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (352)
T PF07690_consen  194 PLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQ----------EVLGFSGPSQAGLLFSIFGIVGIIGS  260 (352)
T ss_dssp             CCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCC----------HHHHCCTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhh----------hccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1112 34444444332   2222222333344456666666532          234677 5788888889999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          346 VLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ---SNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       346 ~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.|++.||+++|+..........+..+.+....   +........++.+++.+...+....+..|.+|+
T Consensus       261 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  330 (352)
T PF07690_consen  261 LLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP  330 (352)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999988887777777777766666522   345566667778888888899999999998874

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=5.8e-30  Score=241.90  Aligned_cols=288  Identities=15%  Similarity=0.157  Sum_probs=223.2

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhh----------------------hcCCCcchhHHHHHHHHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKS----------------------EWGVSPSAESLLSTVVFAGNLVG   76 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~s~~~~~~~i~   76 (412)
                      +.+.+|.+..+++++....+.++..++...+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            46778889999999999999999999999888877                      78999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHH
Q 015136           77 VYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS--PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIF  153 (412)
Q Consensus        77 ~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~  153 (412)
                      +++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+.. +....++.|++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999988876543  56788999999999999998 88899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHH-HhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCC
Q 015136          154 STFWTLGSIFEAALAWIVMIT-LNWRWLLALSSIPSFAVLLLY-SLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPN  231 (412)
Q Consensus       154 ~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (412)
                      ..+..+|..+++++++.+.+. .+||+.|++.+++.++..+.+ .+.+|+|+... + ..++.++..++   ..+     
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~-~~~~~~~~i~~---~~~-----  242 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-C-ISKFEKKYINS---SLQ-----  242 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-C-CCHHHHHHHHh---hcc-----
Confidence            999999999999999999998 499999999988877665544 44556664211 1 11111111100   000     


Q ss_pred             CccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 015136          232 GMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSST  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (412)
                              ++    ..+  .               +...+++++++.+   ..+......++....++....|.|.|+++
T Consensus       243 --------~~----~~~--~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~~l~~  290 (465)
T TIGR00894       243 --------GQ----KGS--T---------------RQSLPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPTFISW  290 (465)
T ss_pred             --------cc----cCC--C---------------CCCCCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    00    000  0               0001344455443   33444555566667777778888887744


Q ss_pred             ccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchh
Q 015136          312 QSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRK  358 (412)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr  358 (412)
                      .          .|.+..+.++...+..++.+++.+++|+++||+++|
T Consensus       291 ~----------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       291 V----------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             H----------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3          478888999999999999999999999999998644

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=2.6e-29  Score=230.36  Aligned_cols=320  Identities=17%  Similarity=0.124  Sum_probs=239.7

Q ss_pred             HHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Q 015136           31 GLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS  110 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  110 (412)
                      ..+.+....+.....+..|.+..+++.++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            35566666777778888899999999999999999999999999999999999999999999999999998888888777


Q ss_pred             h-----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015136          111 P-----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALS  184 (412)
Q Consensus       111 ~-----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~  184 (412)
                      +     +++.+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7     9999999999999999988 888899999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          185 SIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      ++..++..+..+.++++++..  +++++..++..                                              
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------------------------------------------  196 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAA--SEIQALSNAVL----------------------------------------------  196 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCC--ccccccchhHH----------------------------------------------
Confidence            776655544433332211100  00000000000                                              


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHH-HhhhcccccccccccccccccCCCCcchHHHHHHHHcchhh
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGII-LMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELP  343 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (412)
                       ++..+.++.+++++..+.......   .....+.... .+.|.+.++.          .|.++.+.+.......++.++
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  262 (365)
T TIGR00900       197 -RDTREGIKFVLKNPLLRTLLLLAL---LFNLVFAPAIVALFPYVQSKY----------LGRGSTHYGWVLAAFGLGALL  262 (365)
T ss_pred             -HHHHhHHHHHHcCcHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH----------hCCchHHHHHHHHHHHHHHHH
Confidence             000012334444443333322222   2222222222 4445444321          367888889999999999999


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          344 GLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS-NILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       344 g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++++.+++.||.+||+.+..+..+.+++.+.+.+..+ .+...+..++.+++.+...+...++..|..|+
T Consensus       263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  332 (365)
T TIGR00900       263 GALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA  332 (365)
T ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999998887777777777766553 55566677778888888888888888888874

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.7e-29  Score=218.87  Aligned_cols=322  Identities=19%  Similarity=0.193  Sum_probs=256.6

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++.+++.+.+..+........+..++++.+.+.+++|+|++|.+++.++..+...+..++.|.+.||+|.|++...+.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            45566777777888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhH---HHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          100 TSGIGLLSAFSPNY---ISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       100 ~~i~~~~~~~~~~~---~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      ..+-.+..+++.+.   +.+++.+.+.|++.+...+..+++++++|++++|.++|+.. ..++|..+...++..+....+
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            99999988887644   59999999999997777899999999999999999999999 999999999999999999888


Q ss_pred             ---hHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          177 ---WRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       177 ---w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                         ||.+..+..+..++. +..++...|.|......++...  .                                    
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~------------------------------------  209 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--A------------------------------------  209 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--h------------------------------------
Confidence               999988888777765 4456666666542111110000  0                                    


Q ss_pred             CcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHH
Q 015136          253 PLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYL  332 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (412)
                                        .++.+++.   +.+|..++.++.....+.++..+.|.|.++.          ++.++..++.
T Consensus       210 ------------------~~~~v~~~---~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~----------fg~~~~~Ag~  258 (417)
T COG2223         210 ------------------QLKAVFSN---KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ----------FGLSPVTAGL  258 (417)
T ss_pred             ------------------HHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCChhhHHH
Confidence                              12222222   4556677777777778888888888888554          6899999999


Q ss_pred             HHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHhhHhHHHHhh
Q 015136          333 SVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ-------SNILITGLLVGARMFAFGAFTIACIF  405 (412)
Q Consensus       333 ~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (412)
                      ......+.+.+.++.+|+++||+|.++++...+..++++..++....       +........+..+.+.+......+-.
T Consensus       259 ~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~  338 (417)
T COG2223         259 IAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKM  338 (417)
T ss_pred             HHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheee
Confidence            99999999999999999999999999999999999998888887643       23333443444455555555555555


Q ss_pred             ccCCCC
Q 015136          406 TPEQLG  411 (412)
Q Consensus       406 ~~e~~P  411 (412)
                      ++.++|
T Consensus       339 Ip~if~  344 (417)
T COG2223         339 IPVIFP  344 (417)
T ss_pred             chHHHH
Confidence            555444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=3.2e-29  Score=229.05  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      .++.+.+..++.+........+++..+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++++
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4567778888888899999999999999876 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc-----hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 015136          102 GIGLLSAFS-----PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM---  172 (412)
Q Consensus       102 i~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---  172 (412)
                      +..+.++++     ++++.+++.|++.|++ +.. +.....+++++|+++||+++|+.....++|..+++++...+.   
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~  190 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP  190 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999988876     8999999999999998 545 888899999999999999999998777777777666665433   


Q ss_pred             --h-------------cCChHHHHHHHHHHHHHHHHHH-HhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcccc
Q 015136          173 --I-------------TLNWRWLLALSSIPSFAVLLLY-SLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVS  236 (412)
Q Consensus       173 --~-------------~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                        +             ..+||.+.++..++.++..+.. ++.++.|.   .+.+.                         
T Consensus       191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~-------------------------  242 (462)
T PRK15034        191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI-------------------------  242 (462)
T ss_pred             HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH-------------------------
Confidence              2             2347887777777666554443 33333221   00000                         


Q ss_pred             ccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 015136          237 DATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCG  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (412)
                                                       ++....+|.+   .++..+..+++....+.++..+.|.|.++.    
T Consensus       243 ---------------------------------~~~~~vlk~~---~~Wllslly~~tFG~fvg~s~~lp~~~~~~----  282 (462)
T PRK15034        243 ---------------------------------ADQLPVLQRL---HLWLLSLLYLATFGSFIGFSAGFAMLAKTQ----  282 (462)
T ss_pred             ---------------------------------HHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                                             0222233333   345555666666666666777777776432    


Q ss_pred             cccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh-hh-----hhHHHHHHHHH
Q 015136          317 TTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM-LQ-----SNILITGLLVG  390 (412)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~-~~-----~~~~~~~~~~~  390 (412)
                              ++............+...++++++|+++||+|+++++.++.+...++...+.. .+     +.+...+..+.
T Consensus       283 --------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~  354 (462)
T PRK15034        283 --------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMG  354 (462)
T ss_pred             --------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence                    33333333344456778889999999999999999999888877776644332 21     22333333333


Q ss_pred             HHHHHhhHhHHHHhhccCCCC
Q 015136          391 ARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       391 ~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ..++.+..+...+-++++.+|
T Consensus       355 l~~~~G~gngsvfk~ip~~f~  375 (462)
T PRK15034        355 LFLTAGLGSGSTFQMIAVIFR  375 (462)
T ss_pred             HHHHhcccchHHHHhhHHHHh
Confidence            334444444555555555444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=3.7e-29  Score=230.23  Aligned_cols=297  Identities=16%  Similarity=0.160  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      +....+..+..+.......+..|.+.+++|.|.++.|+..+.+.+++.+++++.|+++||+|||+++..+..+.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34445566777777788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136          107 SAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS  185 (412)
Q Consensus       107 ~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~  185 (412)
                      +++++|++.+++.|++.|++.+.. +....++.|++|+++|++++++...+..+|..+++++++.+.+..+||+.|++.+
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~  164 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA  164 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999987 7777788899999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          186 IPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       186 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      +..++..+ ...++||.++    +++. +.++                                                
T Consensus       165 ~~~~~~~~~~~~~lp~~~~----~~~~-~~~~------------------------------------------------  191 (382)
T PRK10091        165 VFNIAVLASIYFWVPDIRD----EAKG-GLRE------------------------------------------------  191 (382)
T ss_pred             HHHHHHHHHHHHhCCCCCc----cccc-CHHH------------------------------------------------
Confidence            77665543 3455666432    0000 0000                                                


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                            .++.+.+++. +.   .....+......+....+.+.+..          +..|.++.+.+.......++.+++
T Consensus       192 ------~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~s~~~~~~~~~~~~~~~~ig  251 (382)
T PRK10091        192 ------QFHFLRSPAP-WL---IFAATMFGNAGVFAWFSYIKPYMM----------FISGFSETSMTFIMMLVGLGMVLG  251 (382)
T ss_pred             ------HHHHhcChHH-HH---HHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHHHHHHHHHHHHHHHHH
Confidence                  1111111211 11   111111111222222222332332          224688889999999999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHh
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAM-LQSNILITGLLVGARMFAF  396 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~  396 (412)
                      +++.|++.||+++|+.+..+..+.+++.+++.. .++.+...+..++.+.+..
T Consensus       252 ~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~  304 (382)
T PRK10091        252 NLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLF  304 (382)
T ss_pred             hHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887777765543 3333333333344444333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=1.2e-28  Score=228.98  Aligned_cols=318  Identities=15%  Similarity=0.074  Sum_probs=234.0

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      +++.+.....+.+..+........+.+..|.+.+++|.|+++.++..+.+.+++.+++++.|+++||+|||++++.+..+
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            45567777777788888888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      .+++.++...+++++.+++.|++.|++.+.. +...+++.|.+|+++|+++.++......+|..++|.+++.+.++.+||
T Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~  167 (406)
T PRK15402         88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR  167 (406)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            9999999999999999999999999999887 777888899999999999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          179 WLLALSSIPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      +.|++.++..++..+. ....||+++...   ++.+.++.                                        
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------------------  204 (406)
T PRK15402        168 GMFVLFAALAALSFFGLWRAMPETAGRVG---EKLSLKEL----------------------------------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccc---ccccHHHH----------------------------------------
Confidence            9999888777665443 445566532110   00000000                                        


Q ss_pred             hhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHH
Q 015136          258 SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                                 ..+++.+++++..+...   ...+......+....+.|.+..          +..|.++.+.+......
T Consensus       205 -----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~----------~~~g~~~~~~g~~~~~~  260 (406)
T PRK15402        205 -----------GRDYKLVLKNRRFVAGA---LALGLVSLPLLAWIALSPVILI----------SGEQLSSYEYGLLQVPV  260 (406)
T ss_pred             -----------HHHHHHHHcCcHHHHHH---HHHHHHHHHHHHHHHHhHHHHH----------HHhCCCHHHHHHHHHHH
Confidence                       00233334443332222   2222222223333333444432          22467777778777777


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHhhHhHHHHh
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML-----QSNILITGLLVGARMFAFGAFTIACI  404 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (412)
                      .++.++++++.+++.||+++|+.+.++.++..++.+.+...     .+.++.....++.+++.+...+....
T Consensus       261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~  332 (406)
T PRK15402        261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYR  332 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            78889999999999999999999988888777766666542     22334445555666666655554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=8.3e-29  Score=232.70  Aligned_cols=342  Identities=13%  Similarity=0.167  Sum_probs=223.9

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++++|.++...++.....+.++..++...|.+.++ |+|+++.+++.+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            44566666666677777777777788888999888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcc----hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 015136          100 TSGIGLLSAFS----PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSI-FEAALAWIVMI  173 (412)
Q Consensus       100 ~~i~~~~~~~~----~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~  173 (412)
                      .+++.+++++.    .+++.+++.|++.|++.+.. +.....+.|++|+++|++++++.+.+.++|.. .+|+++..+..
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99998888765    37888899999999999887 76677788999999999999999999999864 45554444444


Q ss_pred             cCChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          174 TLNWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       174 ~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                      ..+||+.|++.+++.++. ++..+++||+|+....++ .++.++         +.  +         ++  .+.++.++.
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---------~~--~---------~~--~~~~~~~~~  239 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---------DY--P---------DD--YNEKHEQEL  239 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---------cc--c---------cc--cccccCCCc
Confidence            459999999988776665 455667788765311110 000000         00  0         00  000000000


Q ss_pred             Ccccchhhhhhhhcccccch-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchH
Q 015136          253 PLLTSSRIRITKLKSGFSSF-LLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLY  331 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (412)
                      + .  .+           .+ +.+++++   .++...+..++.....++...+.|.|.++.          .|++..+++
T Consensus       240 ~-~--~~-----------~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----------~g~s~~~~~  292 (452)
T PRK11273        240 T-A--KQ-----------IFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSS  292 (452)
T ss_pred             c-H--HH-----------HHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHH
Confidence            0 0  00           01 1122222   233344444444455667777888877443          367777888


Q ss_pred             HHHHHHHcchhhHHHHHHHHHHhh--chhhHH-HHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhhHhHHHHhhc
Q 015136          332 LSVFLASLGELPGLVLAGIIVDRA--GRKLSL-TIMLILVFICILPLAML--QSNILITGLLVGARMFAFGAFTIACIFT  406 (412)
Q Consensus       332 ~~~~~~~~~~~~g~~~~g~l~dr~--grr~~l-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (412)
                      .......++.+++++++|+++||+  +||... .....+..++.+.+...  .+.+...+..+..+....+.......+.
T Consensus       293 ~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  372 (452)
T PRK11273        293 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHA  372 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            888888899999999999999999  455432 22223333333333222  2222233333444443333333344556


Q ss_pred             cCCCCC
Q 015136          407 PEQLGW  412 (412)
Q Consensus       407 ~e~~P~  412 (412)
                      .|.+|+
T Consensus       373 ~~~~p~  378 (452)
T PRK11273        373 LELAPK  378 (452)
T ss_pred             HHHcCh
Confidence            677764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=3.4e-29  Score=229.64  Aligned_cols=326  Identities=17%  Similarity=0.196  Sum_probs=226.6

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           29 YAGLAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      ..+++.+........+++..|. +.+++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.++++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4566677777788888999995 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcch-hHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh----------cCC
Q 015136          108 AFSP-NYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI----------TLN  176 (412)
Q Consensus       108 ~~~~-~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~  176 (412)
                      ++++ +++.+++.|++.|++.+..+...++++|++|+++|++++++.....++|..+++.+++.+.+          +.+
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~  164 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA  164 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            9999 99999999999999866555567889999999999999999998888888888887776654          348


Q ss_pred             hHHHHH-HHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCc
Q 015136          177 WRWLLA-LSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPL  254 (412)
Q Consensus       177 w~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (412)
                      ||+.|+ ..+++..+. .+...+.+|+|+..    ++ +.+.        +..            .+    ... .+++ 
T Consensus       165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--------~~~------------~~----~~~-~~~~-  213 (366)
T TIGR00886       165 WGWAFVIVPAGILLLPALLIFFVGADTPPGK----PA-TGKL--------SFK------------GA----RWS-VGTG-  213 (366)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcccCCccc----cc-chhc--------ccc------------cc----ccc-ccch-
Confidence            999994 434444433 34445556655311    00 0000        000            00    000 0000 


Q ss_pred             ccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHH
Q 015136          255 LTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSV  334 (412)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (412)
                                   ..++..+.++++..   +......+......+....+.+.|.++.          .|.++.+.+...
T Consensus       214 -------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~  267 (366)
T TIGR00886       214 -------------ALGDQLKVFRDRHT---WILALLYSVTFGSFLGVSSIFAMFFKDQ----------FGLSKVTAGAYA  267 (366)
T ss_pred             -------------hHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHH
Confidence                         00012222333222   2222333333344455556666665332          468888888888


Q ss_pred             HHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh--hh--hhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          335 FLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM--LQ--SNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       335 ~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      ....+.++++++++|+++||+|+|+.+..+......+.+++.+  ..  +.........+..++.+...+..++..+|+.
T Consensus       268 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (366)
T TIGR00886       268 SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF  347 (366)
T ss_pred             HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc
Confidence            8889999999999999999999988877777666666555543  22  3333344444455555555666777777776


Q ss_pred             C
Q 015136          411 G  411 (412)
Q Consensus       411 P  411 (412)
                      |
T Consensus       348 ~  348 (366)
T TIGR00886       348 R  348 (366)
T ss_pred             h
Confidence            5

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=9.4e-29  Score=229.29  Aligned_cols=309  Identities=17%  Similarity=0.094  Sum_probs=221.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSG  102 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  102 (412)
                      ++.+..+.+..+....+..+..+.+|. +.+++|.|+++.|++.+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            344455666677777777888888886 6788999999999999999999999999999999999999999999998888


Q ss_pred             HHHHhhcc--------hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          103 IGLLSAFS--------PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       103 ~~~~~~~~--------~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      +.+.+.++        .+++.+++.|+++|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            76655432        25678899999999999987 7777888999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCC
Q 015136          174 TLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTP  253 (412)
Q Consensus       174 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (412)
                      ..|||+.+++..+..++..+.....|++++   +++++.                                         
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------------------------  209 (399)
T PRK05122        174 WGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGERL-----------------------------------------  209 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCccch-----------------------------------------
Confidence            999999888766554433322221222110   000000                                         


Q ss_pred             cccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHH
Q 015136          254 LLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLS  333 (412)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (412)
                                       ++++.+++ .++..    .......+.+.....+.+.+..+.           |.  ...+..
T Consensus       210 -----------------~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~  254 (399)
T PRK05122        210 -----------------PFRRVLGR-VWPYG----MGLALASIGFGTIATFITLYYAAR-----------GW--DGAALA  254 (399)
T ss_pred             -----------------hHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHc-----------cc--ccchHH
Confidence                             01111111 01111    111112223333444445444222           23  234555


Q ss_pred             HHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          334 VFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       334 ~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .....++.++++++.|++.||+++|+.+..+..+.+++.+++...++.+...+..++.+++.+..++.......|.+|
T Consensus       255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~  332 (399)
T PRK05122        255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVP  332 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence            667788889999999999999999999988888888887777766666666666777888777777777777777666

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.97  E-value=3.1e-28  Score=233.17  Aligned_cols=323  Identities=33%  Similarity=0.447  Sum_probs=254.7

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-
Q 015136           52 KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-  130 (412)
Q Consensus        52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-  130 (412)
                      .+.++.+.....+..+++++|..+|++++|+++||+|||++++++.++..++.++.++++|++.+++.|++.|++.+.. 
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            4666778888999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCC
Q 015136          131 PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGR  210 (412)
Q Consensus       131 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (412)
                      .+...++.|+.++++|+.+..+ ......+..+++..++++..  +||+.+++..++.++.++.+++.+|+|+|+..+++
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR  266 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc
Confidence            8889999999999999999999 77777788888888888877  89999999999988887777777799999999999


Q ss_pred             hHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchh-hHHHHHHHHH
Q 015136          211 TTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSR-LVRTTLLLWM  289 (412)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  289 (412)
                      .+++.+..++..+.|+............. +                .+..+.....+...+.++++.+ ..+.++...+
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  329 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKELLRLEL-L----------------LRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF  329 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHHHHHHH-H----------------hhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH
Confidence            99999988887766522211111110000 0                0000000001112456666654 6777777888


Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHH
Q 015136          290 LFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVF  369 (412)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~  369 (412)
                      .++.....+|+.......+.                  ..........+.....+....+...|++|||..+..+..+..
T Consensus       330 ~~~~~~~~y~gl~~~~~~lg------------------~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~  391 (521)
T KOG0255|consen  330 IWFVFSLVYYGLSLNVSGLG------------------GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAG  391 (521)
T ss_pred             HHHHHhHHHHhhhhhhhhcC------------------chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            88888888888876665332                  334555556666788888888999999999999999999999


Q ss_pred             HHHHHHHhhhhhH---HHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          370 ICILPLAMLQSNI---LITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       370 ~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++++...+.....   ...+...+..++.+..+...+.+.+|++|+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt  437 (521)
T KOG0255|consen  392 IGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT  437 (521)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            9999888744332   456666667777777888889999999995

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=9.1e-28  Score=227.50  Aligned_cols=362  Identities=17%  Similarity=0.138  Sum_probs=240.1

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL  105 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  105 (412)
                      .+..++++.+....+....++..|.+.+++|.|+.+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34556677788888888889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015136          106 LSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALS  184 (412)
Q Consensus       106 ~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~  184 (412)
                      ++.++++++.+++.|+++|++.+.. +...+++.|++|+++|+++.++.....++|..++|.+++.+.++.+||+.|.+.
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~  170 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN  170 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence            8889999999999999999999988 888889999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHH---H---HHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          185 SIPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILD---K---IALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      .....+..+. ....|+.+.   ++.+.+.......   .   ....++.+. .... ..........     ......-
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~-----~~~~~~~  240 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKG-LGLS-PLAIAGLVAV-----GVVALLL  240 (471)
T ss_pred             HHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCc-CCcc-hHHHHHHHHH-----HHHHHHH
Confidence            7666555433 344444332   1112221111000   0   000000000 0000 0000000000     0000000


Q ss_pred             hhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHH
Q 015136          258 SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                      ...++++.+++..+.+ +++++..+......+   .....+.....+.|.|.+.          ..|.++...++.....
T Consensus       241 ~~~~~~~~~~~~~~~~-l~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~g~~~~~~  306 (471)
T PRK10504        241 YLLHARNNNRALFSLK-LFRTRTFSLGLAGSF---AGRIGSGMLPFMTPVFLQI----------GLGFSPFHAGLMMIPM  306 (471)
T ss_pred             HHHHHhcCCCCccCHH-HhcccchHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHH
Confidence            0000000011111222 334333333322222   2222333333445544432          2467888889888888


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--h-hHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--S-NILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .++.+++.++.+++.||+|||+.+..+..+.++..+++.+..  + .+......++.+++.+..++.......+..|
T Consensus       307 ~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  383 (471)
T PRK10504        307 VLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLP  383 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888899999999999999999999988887777766665522  2 2222334455556666666777777666665

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=7.7e-29  Score=228.34  Aligned_cols=331  Identities=16%  Similarity=0.234  Sum_probs=226.5

Q ss_pred             HHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchh
Q 015136           33 AVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPN  112 (412)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~  112 (412)
                      .++..+.++..++...|.+.+++|.|.++.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            45667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          113 YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEA-ALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       113 ~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      ++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+||+.|++.+++.++
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII  162 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            999999999999999988 88889999999999999999999999999999999 5777777888999999988876665


Q ss_pred             H-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccc
Q 015136          191 V-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGF  269 (412)
Q Consensus       191 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (412)
                      . ++..++.+|+|+....++.++              .  .     .+ +.+.+++.    +++..+          ...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~--------------~--~-----~~-~~~~~~~~----~~~~~~----------~~~  206 (379)
T TIGR00881       163 VSLICFLLLRDSPQSCGLPPAEE--------------M--P-----NE-EPDGDAEK----KEEELT----------KKQ  206 (379)
T ss_pred             HHHHHheeeCCCccccccCcccc--------------C--c-----cc-cccccccc----cccccc----------chH
Confidence            5 444555666553110000000              0  0     00 00000000    000000          000


Q ss_pred             cchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHH
Q 015136          270 SSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAG  349 (412)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g  349 (412)
                      ...+.+++.+..   +...+..+...........+.|.+.++          ..|.++.+.+.......++.++++++.|
T Consensus       207 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~g  273 (379)
T TIGR00881       207 IFLQYVLLNKVL---WYISLGYVFVYVVRTGILDWSPLYLTQ----------EKGFSKEKASWAFTLYELGGLVGTLLAG  273 (379)
T ss_pred             HHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhCCCHHHHHHHHHHHHHHcchhHHHHH
Confidence            022233333322   223333333344445555566665532          2468888889999999999999999999


Q ss_pred             HHHHhhc-hhhH-HHHHH-HHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          350 IIVDRAG-RKLS-LTIML-ILVFICILPLAM--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       350 ~l~dr~g-rr~~-l~~~~-~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.||.. +|+. +.... ....++...+..  ..+.....+..++.++...+..+....+..|.+|+
T Consensus       274 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  341 (379)
T TIGR00881       274 WLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPK  341 (379)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence            9999864 3332 22222 222222222222  22333334444555555555556666777887764

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=4.2e-28  Score=224.34  Aligned_cols=304  Identities=15%  Similarity=0.075  Sum_probs=210.5

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           29 YAGLAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      .+.++.+..........+.+|. +.+++|.|+++.|++.+++.+++.+++++.|+++||+|||++++.+.+...++.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (392)
T PRK12382         19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY   98 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            3444455556666677777775 578999999999999999999999999999999999999999999988877665432


Q ss_pred             ---hc-----chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          108 ---AF-----SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       108 ---~~-----~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                         ..     .++++.+++.|+++|++.+.. +...+++.|+.|+|+|++++++.+.+..+|..++|++++.+.+..|||
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  178 (392)
T PRK12382         99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA  178 (392)
T ss_pred             HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence               21     357889999999999999887 777788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      +.+.+..+..++........||.++   ++++++                                              
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------------------------  209 (392)
T PRK12382        179 ALALTTMVLPLLAWAFNGTVRKVPA---HAGERP----------------------------------------------  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC---CcccCc----------------------------------------------
Confidence            8776654433322222111222110   000000                                              


Q ss_pred             hhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHH
Q 015136          259 RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLAS  338 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (412)
                                  +.++..+........     .+.....+.....+.+.+..+.           +.+  ..+.......
T Consensus       210 ------------~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~  259 (392)
T PRK12382        210 ------------SLWSVVGLIWKPGLG-----LALQGVGFAVIGTFVSLYFASK-----------GWA--MAGFTLTAFG  259 (392)
T ss_pred             ------------hHHHHHHHHHHhHHH-----HHHHHHHHhHHHHHHHHHHHhc-----------CCc--hhHHHHHHHH
Confidence                        000001100001111     1111222233334444444222           233  3455566677


Q ss_pred             cchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          339 LGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       339 ~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ++.++++++.|++.||+|+|+.+..+..+.+++.+++.+.++.+...+..++.+++.+..++...+...|.+|
T Consensus       260 ~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  332 (392)
T PRK12382        260 GAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVP  332 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            7788999999999999999999998888888887777666655555566667777777777777777777665

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=1.3e-27  Score=221.74  Aligned_cols=306  Identities=17%  Similarity=0.180  Sum_probs=223.6

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhH
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNY  113 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  113 (412)
                      .....+....+.+..|.+.+++|.++++.++..+++.+++.++++++|+++||+|||+.+..+.++.+++.+++.+++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   94 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA   94 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            44455566777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~  192 (412)
                      +.+++.|++.|++.+.. +...+++.|++|++++++..+.......+|..++|.+++.+.++.+||+.|++.++..++..
T Consensus        95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            99999999999998876 66667889999999999999999999999999999999999999999999999887777665


Q ss_pred             HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccch
Q 015136          193 LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSF  272 (412)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (412)
                      +..++++|+++.    ++.++.+                                                      .++
T Consensus       175 ~~~~~~~~~~~~----~~~~~~~------------------------------------------------------~~~  196 (401)
T PRK11043        175 LPTLRLKPSKKA----RKQSQDA------------------------------------------------------LTF  196 (401)
T ss_pred             HHHHHcCCCCCc----cccchHH------------------------------------------------------HHH
Confidence            555555554321    0000000                                                      022


Q ss_pred             hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHH
Q 015136          273 LLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIV  352 (412)
Q Consensus       273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~  352 (412)
                      +++++++..+....   ........++....+.|.+.+           +.|.++.+.++......++.++|+++.+++.
T Consensus       197 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~-----------~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~  262 (401)
T PRK11043        197 KQLLKSKTYLGNVL---IFAACSAAFFAWLTGSPFILE-----------QMGYSPADIGLSYVPQTIAFLVGGYGCRAAL  262 (401)
T ss_pred             HHHHcChhHHHHHH---HHHHHHHHHHHHHHHhHHHHH-----------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333332222111   112222333444445555542           2468888888888888888899999999999


Q ss_pred             HhhchhhHHHHHHHHHHHHHHHHH---h--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          353 DRAGRKLSLTIMLILVFICILPLA---M--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       353 dr~grr~~l~~~~~~~~~~~~~l~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ||+++|+.+.......+++.+.+.   .  .++.+...+...+.+++.+..++.......|..|
T Consensus       263 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (401)
T PRK11043        263 QKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP  326 (401)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence            999988876655554444433322   1  2233334444555666777777877776666555

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=1.3e-27  Score=221.54  Aligned_cols=310  Identities=14%  Similarity=0.045  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      ...+.+..+..........+.+|.+.+++|.+.++.++..+++.+++.+++++.|+++||+|||++++.+.++++++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~   97 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA   97 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            33445555566677888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136          107 SAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS  185 (412)
Q Consensus       107 ~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~  185 (412)
                      +..++|++.++++|+++|++.+.. +....++.|++|+++|++++++......+|..++|.+++.+.++.|||+.|++.+
T Consensus        98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~  177 (413)
T PRK15403         98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA  177 (413)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999998865 5566788899999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          186 IPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      +..++..+. ++.+||+++.   ++++.+.+.                                                
T Consensus       178 ~~~~i~~~~~~~~lp~~~~~---~~~~~~~~~------------------------------------------------  206 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETVKR---GAVPFSAKS------------------------------------------------  206 (413)
T ss_pred             HHHHHHHHHHHHhCCCCccc---cCCCCChHH------------------------------------------------
Confidence            877766544 4557776431   000000000                                                


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                         ..++++.+++++..+   ............++....+.|.+.++.          .|.++.+.++.......+.+++
T Consensus       207 ---~~~~~~~ll~~~~~~---~~~l~~~~~~~~~~~~~~~~P~~l~~~----------~g~s~~~~gl~~~~~~~~~~i~  270 (413)
T PRK15403        207 ---VLRDFRNVFRNRLFL---TGAATLSLSYIPMMSWVAVSPVILIDA----------GGMTTSQFAWTQVPVFGAVIVA  270 (413)
T ss_pred             ---HHHHHHHHHcCHHHH---HHHHHHHHHHHHHHHHHHhChHHHHHh----------cCCCHHHHHHHHHHHHHHHHHH
Confidence               001333444443333   233333334444555556667665433          4688888888888788888888


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh----hhhhH-HHHHHHHHHHHHHhhHhHHHH
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAM----LQSNI-LITGLLVGARMFAFGAFTIAC  403 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~  403 (412)
                      +.+.+.+.+|..+++.......+..++.+.+..    ..+.+ ..++..++.+++.+...|...
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~  334 (413)
T PRK15403        271 NAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLF  334 (413)
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHH
Confidence            888887765544333332222222222222211    12222 234455556666666666665

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.97  E-value=3.8e-28  Score=227.89  Aligned_cols=346  Identities=11%  Similarity=0.055  Sum_probs=236.9

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      .+.++|.++..+.+...........++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus        13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   92 (455)
T TIGR00892        13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL   92 (455)
T ss_pred             CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence            35667888877777766666666678888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHH-HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136           99 ITSGIGLLSAFSPNYISLVT-LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~-~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      +.+++.++++++++++.+++ .|++.|++.+.. +....++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            99999999999999988865 579999999876 666677788885 899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCccc
Q 015136          177 WRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLT  256 (412)
Q Consensus       177 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (412)
                      ||+.|++.+++.++..+..++..+.+... ++.+.++ +         +.. .+          +...+..  ..    +
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~-~---------~~~-~~----------~~~~~~~--~~----~  223 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGALMRPVGPSQ-RVSKSKS-K---------EGL-PP----------DGSTKKL--SK----K  223 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCccc-ccccccc-c---------ccC-CC----------CCccccc--cc----c
Confidence            99999999887766544444443322100 0000000 0         000 00          0000000  00    0


Q ss_pred             chhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHH
Q 015136          257 SSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFL  336 (412)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (412)
                       .   ..+...+..++ ++++++..   +......+.....++....+.+.|.++           .|+++.+.+....+
T Consensus       224 -~---~~~~~~~~~~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~~-----------~g~s~~~~g~~~~~  284 (455)
T TIGR00892       224 -S---TAEKINRFLDF-SLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAKD-----------KGVDEYEAAFLLSI  284 (455)
T ss_pred             -c---hhhhhhhhcch-HHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHHH-----------cCCCHHHHHHHHHH
Confidence             0   00000000112 23333322   222233333444555556666666532           36888899999999


Q ss_pred             HHcchhhHHHHHHHHHHhh--chhhHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          337 ASLGELPGLVLAGIIVDRA--GRKLSLTI--MLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       337 ~~~~~~~g~~~~g~l~dr~--grr~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+++.+++++++|++.||.  ++|+...+  +.++.+++.+......+.+.+.+..++.+++.+...+...+...|.+|+
T Consensus       285 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~  364 (455)
T TIGR00892       285 IGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA  364 (455)
T ss_pred             HHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH
Confidence            9999999999999999983  33333332  3333344444444455556666667778887777778888887777663

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=1.7e-27  Score=219.96  Aligned_cols=317  Identities=13%  Similarity=0.044  Sum_probs=231.8

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      +.+++..++..++.....++..|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||++++.+.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44566777788888888899999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhc---chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Q 015136          107 SAF---SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT--------  174 (412)
Q Consensus       107 ~~~---~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------  174 (412)
                      ...   .++++.+++.|++.|+|.|.. +...+++.+..|+++|++.+++.+...++|..++|.++..+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            543   468999999999999999998 88888999999999999999999999999999999999887532        


Q ss_pred             ------------------CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcccc
Q 015136          175 ------------------LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVS  236 (412)
Q Consensus       175 ------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (412)
                                        .+||++|++.+++.++..+...+.+. |+.   ++++++ +.                    
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~-p~~---~~~~~~-~~--------------------  219 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKM-PAL---NHSDAK-QI--------------------  219 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC---Cccccc-cc--------------------
Confidence                              36999999888766655444333221 110   000000 00                    


Q ss_pred             ccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 015136          237 DATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCG  316 (412)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (412)
                                   +                 ...+.+++++++..+...+   ..++......+...+.+.|..+.+   
T Consensus       220 -------------~-----------------~~~~~~~~~~~~~~~~~~l---~~f~yvg~e~~~~s~l~~y~~~~~---  263 (410)
T TIGR00885       220 -------------S-----------------FSASLSRLARIRHYREGVI---AQFFYVGVQIMCWTFIIQYAVRLI---  263 (410)
T ss_pred             -------------c-----------------chhhHHHHHhChhHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcc---
Confidence                         0                 0001222333333333222   223333333444456666653321   


Q ss_pred             cccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 015136          317 TTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAF  396 (412)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  396 (412)
                            .+.+.............+..+|+++++++.||+++|+.+.+...+..++.++..+.++.. ....+.+.+++.+
T Consensus       264 ------~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s  336 (410)
T TIGR00885       264 ------PGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMS  336 (410)
T ss_pred             ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence                  123333334455555677889999999999999999999888888888887777755543 3566777788888


Q ss_pred             hHhHHHHhhccCCCC
Q 015136          397 GAFTIACIFTPEQLG  411 (412)
Q Consensus       397 ~~~~~~~~~~~e~~P  411 (412)
                      ..+|..++...+..+
T Consensus       337 ~~fp~i~sl~~~~~g  351 (410)
T TIGR00885       337 LMFPTIYGIALKGLG  351 (410)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            889998888777654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=1.1e-27  Score=220.36  Aligned_cols=310  Identities=17%  Similarity=0.123  Sum_probs=217.6

Q ss_pred             HHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHhhc
Q 015136           32 LAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLG-IAMITSGIGLLSAF  109 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~  109 (412)
                      +.++..........+..|. +.+++|.|+++.|++.+.+.++..+.+++.|+++||+||||.++. +..+.+++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3455666666777777775 578899999999999999999999999999999999999887654 55666677778888


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMW--MVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI  186 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~  186 (412)
                      +++++.+++.|++.|.+.+.. +...++..|+.|+++|+++  .+....+.++|..++|.+++.+.+..+||+.|++.++
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            999999999999988877766 7777788888887777755  5788888899999999999999999999999999988


Q ss_pred             HHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136          187 PSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL  265 (412)
Q Consensus       187 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
                      +.++..+. ++++||.|+...++++.                                   .                  
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~------------------  190 (375)
T TIGR00899       164 AFVLCGVLVWLFLPSYPRGAPGALTR-----------------------------------L------------------  190 (375)
T ss_pred             HHHHHHHHHHHhCCCcccCcccccCc-----------------------------------c------------------
Confidence            76665444 45577765311000000                                   0                  


Q ss_pred             cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHH
Q 015136          266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGL  345 (412)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  345 (412)
                           +.++.++++..+..........   ........+.|.+..          ++.|.++.+.+..........+++.
T Consensus       191 -----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T TIGR00899       191 -----EVRGLLASRDTRLLFVACTLMW---GCNILYIINMPLLII----------HELGLPDKLAGLMMGTAAGLEIPFM  252 (375)
T ss_pred             -----hhhhhhcCcchHHHHHHHHHHH---HHHHHHHhhhHHHHH----------HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                 0011112222222222211111   111222233343332          2246777788877777777778889


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          346 VLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       346 ~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +++|++.||+|||+.+..+.++..+..+.+...++.+.......+.+++.+...+....+..|..|+
T Consensus       253 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  319 (375)
T TIGR00899       253 LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG  319 (375)
T ss_pred             HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999999998887776666555555555555555556666777777778888888887764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=2.8e-27  Score=218.00  Aligned_cols=314  Identities=15%  Similarity=0.055  Sum_probs=218.4

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  109 (412)
                      ++++.++..++........+.+.++++.+..+.+++.+.+.+++.+.+++.|+++||+|||++++++.++.+++.+.+.+
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~   87 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF   87 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            34556666665555666667778999999999999999999999999999999999999999999999999998887776


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      ..+.   ++.|+++|++.+.. |...+++.|++|+++|+++.++.+....+|.++||.+++.+.+. .|+..+.+.+...
T Consensus        88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195         88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            6654   77899999999998 99999999999999999999999999999999999999999885 4887777766555


Q ss_pred             HHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhccc
Q 015136          189 FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSG  268 (412)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (412)
                      ++..+..+.+||+|....+  ++++..+..++..                                              
T Consensus       164 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~----------------------------------------------  195 (393)
T PRK11195        164 LLAALFNLFIPRLGARRPG--QSWNPIALLRDFF----------------------------------------------  195 (393)
T ss_pred             HHHHHHHhcCCCCcccccc--cCCCHHHHHHHHH----------------------------------------------
Confidence            5445555667776532110  0000000000000                                              


Q ss_pred             ccchhhccchhhHHHHHHH-HHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHH
Q 015136          269 FSSFLLLFSSRLVRTTLLL-WMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVL  347 (412)
Q Consensus       269 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  347 (412)
                       ...+.+++++..+..... .+.+.......+....+.+..              .|.++.+.+......+++.+++++.
T Consensus       196 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------lg~s~~~~G~~~~~~~~g~i~g~~~  260 (393)
T PRK11195        196 -HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA--------------LGITLNQPAYLQAVVAIGIAVGAGA  260 (393)
T ss_pred             -HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCChhHHHHHHHHHHHHHHHHHHH
Confidence             012233333333322222 222222222223333333332              3688889999999999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          348 AGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       348 ~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .+++.||.++++.+..+.. .++..+.+.+.++.+......++.|++.+...+...+...|.-|
T Consensus       261 ~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~  323 (393)
T PRK11195        261 AARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGH  323 (393)
T ss_pred             HHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCc
Confidence            9999999998887777653 34444444444444445555656676666655555555555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=1.1e-27  Score=220.52  Aligned_cols=307  Identities=14%  Similarity=0.171  Sum_probs=218.2

Q ss_pred             hHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136           39 MEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT  118 (412)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  118 (412)
                      +....+.+..|.+.+++|+|+++.+++.+++.++..++.++.|+++||+|||+.+..+.++.+++..++.++++++.+++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HHHH
Q 015136          119 LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL-LLYS  196 (412)
Q Consensus       119 ~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~-~~~~  196 (412)
                      .|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++.. ...+
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999887 78889999999999999999999999999999999999999998999999998887766654 3445


Q ss_pred             hccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhcc
Q 015136          197 LAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLF  276 (412)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (412)
                      +.||+++... +++ .+.++                                                   ..+++++.+
T Consensus       165 ~~~~~~~~~~-~~~-~~~~~---------------------------------------------------~~~~~~~~~  191 (377)
T PRK11102        165 FIPETLPKER-RQP-FHLRT---------------------------------------------------TIRNFASLF  191 (377)
T ss_pred             hCCccCcccc-cCC-CChHH---------------------------------------------------HHHHHHHHH
Confidence            5666532100 000 00000                                                   000223333


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhc
Q 015136          277 SSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAG  356 (412)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g  356 (412)
                      +++......   ...+......+....+.|.+..          +..|.++.+.+.......++.++++++.|++.||+|
T Consensus       192 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g  258 (377)
T PRK11102        192 RHKRVLGYM---LASGFSFAGMFSFLTAGPFVYI----------ELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVG  258 (377)
T ss_pred             cChHHHHHH---HHHHHHHHHHHHHHHcCHHHHH----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333222222   1222222223333333343332          224688888999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHh---hh-hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          357 RKLSLTIMLILVFICILPLAM---LQ-SNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       357 rr~~l~~~~~~~~~~~~~l~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ||+.+..+..+..+..+.+..   .+ +.+...+...+...+.+...+....+..|..|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (377)
T PRK11102        259 ALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP  317 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence            999988887765444333322   12 22222222323333333334444455566555

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=1.4e-27  Score=222.55  Aligned_cols=312  Identities=19%  Similarity=0.119  Sum_probs=230.4

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-----
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA-----  108 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-----  108 (412)
                      .+...+......+..|.+.++++.++.+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+...     
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            444555666777888999999999999999999999999999999999999999999999988887777665443     


Q ss_pred             cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015136          109 FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP  187 (412)
Q Consensus       109 ~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~  187 (412)
                      ..++++.+++.|++.|++.+.. +...+++.|+.|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++.
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            2567888999999999998877 777889999999999999999999999999999999999999988999999988777


Q ss_pred             HHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcc
Q 015136          188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKS  267 (412)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (412)
                      .++..+..+.+|++++..  +++.++.++                                                   
T Consensus       186 ~~~~~~~~~~l~~~~~~~--~~~~~~~~~---------------------------------------------------  212 (417)
T PRK10489        186 TFITLLPLLRLPALPPPP--QPREHPLRS---------------------------------------------------  212 (417)
T ss_pred             HHHHHHHHHhCCCCCCCC--cccccchHH---------------------------------------------------
Confidence            666666666666653210  000000000                                                   


Q ss_pred             cccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHH
Q 015136          268 GFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVL  347 (412)
Q Consensus       268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  347 (412)
                      ....++..++++..+..........    ...+...+.|.+.++.          .|.++...++......++.+++.++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g~~ig~~~  278 (417)
T PRK10489        213 LLAGFRFLLASPVVGGIALLGGLLT----MASAVRVLYPALADEV----------WQMGAAQIGLLYAAVPLGAALGALT  278 (417)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHH----HHHhHHHhhHHHHHhc----------cCCChhHhHHHHHHHHHHHHHHHHH
Confidence            0002223333333333222222111    1233445566665332          4688888899999999999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          348 AGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       348 ~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+++.||.++++.+..+.++.+++.+.+.+.++.+...+..++.+++.+...+...+++.|..|+
T Consensus       279 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  343 (417)
T PRK10489        279 SGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPD  343 (417)
T ss_pred             HHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence            99999998888888888887777777776666655555666667776666667777888888773

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=6.3e-27  Score=216.50  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=210.9

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  111 (412)
                      ...+....+.....+..|.+.+++|.|.++.++..+.+.++..+++++.|+++||+|||+.++.+.++.+++..++..++
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~   89 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE   89 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence            33445555566667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      +++.+++.|++.|++.+.. +...+++.|.+|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.++..++
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence            9999999999999999887 778899999999999999999999999999999999999988889999999998877665


Q ss_pred             HHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccc
Q 015136          191 VLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGF  269 (412)
Q Consensus       191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (412)
                      ..+ ..+.+||+++..  +++..+..+                                                     
T Consensus       170 ~~~~~~~~~~~~~~~~--~~~~~~~~~-----------------------------------------------------  194 (392)
T PRK10473        170 VLLLSLFILKETRPAR--APAASSKPR-----------------------------------------------------  194 (392)
T ss_pred             HHHHHHHHcCCCCCcc--cCCccchHH-----------------------------------------------------
Confidence            543 455566653210  000000000                                                     


Q ss_pred             cchhhccch-hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHH
Q 015136          270 SSFLLLFSS-RLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLA  348 (412)
Q Consensus       270 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  348 (412)
                       ..++.+++ +.+...........    .......+.|.+..          ++.|.++.+.+......+++.++++++.
T Consensus       195 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~i~~~~~~  259 (392)
T PRK10473        195 -ENSESLLNRFFLSRLVITTLSVT----VILTFVNTSPVLLM----------EQMGFSRGEYAIIMALTAGVSMTVSFST  259 (392)
T ss_pred             -HHHHHHhCHHHHHHHHHHHHHHH----HHHHHHHhCHHHHH----------HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111222 22222222211111    11112222333321          2246777788888888999999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 015136          349 GIIVDRAGRKLSLTIMLILVFICILPLAMLQSNIL  383 (412)
Q Consensus       349 g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~  383 (412)
                      +++.||+|||+.+..+..+..++.+.+.+......
T Consensus       260 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (392)
T PRK10473        260 PFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAV  294 (392)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888877777766544443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=5.3e-27  Score=217.12  Aligned_cols=319  Identities=14%  Similarity=0.079  Sum_probs=222.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSG  102 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  102 (412)
                      .++.+.+.........+......+..|.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            34444444455556566677778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136          103 IGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       103 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      +.+++.++++++.+++.|++.|++.+.. +....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+..|||+.|
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f  165 (394)
T PRK11652         86 GTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY  165 (394)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            9999999999999999999999998876 666677889999999999999999999999999999999999989999999


Q ss_pred             HHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          182 ALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      ++.++..++. .+..++.||+++..   +++++.+                                             
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------------------------------  197 (394)
T PRK11652        166 LFLLLLGAGVTFSMARWMPETRPAD---ARRTRVL---------------------------------------------  197 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCccc---cchhHHH---------------------------------------------
Confidence            9987766554 33455667754311   0000000                                             


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                               ..++..++++..+.........+..   ........+.+.++          ..|.++.+.++......++
T Consensus       198 ---------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~  255 (394)
T PRK11652        198 ---------ASYRTLLSNRRFNCYLLMLIGTLAG---IAVFEACSGVLMGA----------VLGLSSMTVSILFILPIPA  255 (394)
T ss_pred             ---------HHHHHHHcChHHHHHHHHHHHHHHH---HHHHHHhChHHHHH----------HcCCCHHHHHHHHHHHHHH
Confidence                     0223333333333333222222211   11111222222221          2467777888888788888


Q ss_pred             hhhHHHHHHHHHHhhchhhHHHHHHH-HHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          341 ELPGLVLAGIIVDRAGRKLSLTIMLI-LVFICILPLAM--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr~~l~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .+++..+.+++.||.+++........ ...+.......  ..+.+......++.+++.+..+|...++..|.+|
T Consensus       256 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  329 (394)
T PRK11652        256 AFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            88888899999999884433322222 22222222211  1233444555666777777778888888777766

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=4e-27  Score=218.08  Aligned_cols=313  Identities=20%  Similarity=0.252  Sum_probs=220.4

Q ss_pred             HHHhhHHHhhhhhhhhhhhhcC--CCcchhHHHHHH-----HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           35 FAEAMEIMILSFIGPAVKSEWG--VSPSAESLLSTV-----VFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~s~-----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      +.+++++..++...+.+.+++.  .++++.+...+.     ..++..+++++.|+++||+|||++++.+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4567788888888888887764  445666655443     333445789999999999999999999999999999999


Q ss_pred             hcchhHH--------HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 015136          108 AFSPNYI--------SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM------  172 (412)
Q Consensus       108 ~~~~~~~--------~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------  172 (412)
                      +++++++        .+++.|+++|++.+.. +....++.|++|+++|++..++...+..+|..+++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9988875        4788999999999987 888899999999999999999999999999999998877654      


Q ss_pred             --hcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCC
Q 015136          173 --ITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPD  250 (412)
Q Consensus       173 --~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (412)
                        +..+||+.|.+.+++.++........+|++++..++++.+               +                      
T Consensus       163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~----------------------  205 (394)
T TIGR00883       163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHK---------------K----------------------  205 (394)
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccc---------------c----------------------
Confidence              3578999998877766655555555666543211000000               0                      


Q ss_pred             CCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcch
Q 015136          251 NTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSL  330 (412)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (412)
                                       ...+.++.++++. +..+......+.....++....+.|.+.++          +.|.++.+.
T Consensus       206 -----------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~  257 (394)
T TIGR00883       206 -----------------KRGPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQ----------TLGLSANSA  257 (394)
T ss_pred             -----------------ccCCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCChhHH
Confidence                             0002222222221 223333444444455556666667766532          246778888


Q ss_pred             HHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHH-h--hhhhHHHHHHHHHHHHHHhhHhHHHHhhc
Q 015136          331 YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICI-LPLA-M--LQSNILITGLLVGARMFAFGAFTIACIFT  406 (412)
Q Consensus       331 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~-~~l~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (412)
                      +.......+...++.++.|+++||+|||+.+.....+..+.. ..+. .  ..+.+.......+.+++.+...+...++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  337 (394)
T TIGR00883       258 LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFL  337 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            888888899999999999999999999988775554443332 2222 2  23334444555666777777888889999


Q ss_pred             cCCCCC
Q 015136          407 PEQLGW  412 (412)
Q Consensus       407 ~e~~P~  412 (412)
                      +|.+|+
T Consensus       338 ~~~~p~  343 (394)
T TIGR00883       338 PELFPT  343 (394)
T ss_pred             HHhCCc
Confidence            999884

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=4.7e-27  Score=216.29  Aligned_cols=307  Identities=16%  Similarity=0.175  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      +..+.++.+.........++..|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455667777888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136          107 SAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS  185 (412)
Q Consensus       107 ~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~  185 (412)
                      +++++|++.+++.|+++|++.+.. +.....+.+..++++|+++++.+..+.++|..+|+.+++.+.+...|+..+.. +
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~  166 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-G  166 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-H
Confidence            999999999999999999999887 77667777888999999999999999999999999999998775433333322 2


Q ss_pred             HHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136          186 IPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
                      ........ .++.+.+++    +++++                                   + .               
T Consensus       167 ~~~~~~~~-~~~~~~~~~----~~~~~-----------------------------------~-~---------------  190 (381)
T PRK03633        167 LVLAAILP-LLFTRILNQ----QAENH-----------------------------------D-S---------------  190 (381)
T ss_pred             HHHHHHHH-HHHhcccCC----CCCCC-----------------------------------C-C---------------
Confidence            21111111 112111110    00000                                   0 0               


Q ss_pred             cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHH
Q 015136          266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGL  345 (412)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  345 (412)
                          .+.++.++++..+......+.   ....+.....+.|.|.++           .|.++...+.......++.++++
T Consensus       191 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~~~~-----------~g~s~~~~g~~~~~~~~~~~~~~  252 (381)
T PRK03633        191 ----TSIWPMLKLRQARLGVNGCII---SGIVLGSLYGLMPLYLNH-----------QGMSDASIGFWMALLVSAGILGQ  252 (381)
T ss_pred             ----CCHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence                011222222222221111111   112222333445655532           35777788888888889999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          346 VLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       346 ~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +..|++.||+++|+.+..+..+..++.+.+.  .. ........+.+.+.....|...+.+.|..|
T Consensus       253 ~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~  315 (381)
T PRK03633        253 WPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-AAMAPALFILGAAGFTLYPVAMAWACEKVE  315 (381)
T ss_pred             hhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-HHHHHHHHHHHHHHHhHHHHHHHHHHccCC
Confidence            9999999999999998888777777665443  11 222233444555555667888888878765

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.9e-30  Score=225.11  Aligned_cols=182  Identities=25%  Similarity=0.290  Sum_probs=169.8

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      .+..++.+.++++...++..+++.+....+.+++.||++++..|++.+.+.+++.+.+|+.|+++||+.||+++.+|..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            45567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-h
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-W  177 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w  177 (412)
                      +.++.+.++++..+|++.++|.+.|+|.+.. ++.+++++|.+|.++|++++++++.+.++|..+|.+.+..+.+..+ |
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            9999999999999999999999999999998 9999999999999999999999999999999999999999888666 9


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhccCC
Q 015136          178 RWLLALSSIPSFAVLLLY-SLAPES  201 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~-~~~~~~  201 (412)
                      ||.|...++++++..++. ++.+|+
T Consensus       188 r~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhhccCc
Confidence            999999999998886654 445544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1.7e-27  Score=223.11  Aligned_cols=287  Identities=16%  Similarity=0.195  Sum_probs=203.2

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      .++..+....+.+...+.++..+....|.+.+ +|+|+++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            35666677777777777777777778888876 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc----hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 015136          102 GIGLLSAFS----PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM-ITL  175 (412)
Q Consensus       102 i~~~~~~~~----~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~  175 (412)
                      ++.++....    ++++.+.+.|++.|++.+.. +.....+.|++|+++|++++++.+.+.++|..+++.+.+... ++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence            988877654    46777888999999999987 777788889999999999999999999999999988877544 457


Q ss_pred             ChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCc
Q 015136          176 NWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPL  254 (412)
Q Consensus       176 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (412)
                      +||+.|++.+++.++. ++.++++||+|+....+ +.++.+         ++.           .++..   ++  .+.+
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~-----------~~~~~---~~--~~~~  236 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYR---------NDY-----------PDDYN---EK--AEQE  236 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhcc---------ccc-----------ccccc---cc--cccc
Confidence            9999999988877665 44566677765421100 000000         000           00000   00  0000


Q ss_pred             ccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHH
Q 015136          255 LTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSV  334 (412)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (412)
                      .+.        ++.  ..+.+++++..+   ......++.....++...+.|.|.++.          .|.++.+.++..
T Consensus       237 ~~~--------~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~~~~  293 (438)
T TIGR00712       237 LTA--------KEI--FMQYVLPNKLLW---YIAIANVFVYLLRYGVLDWSPTYLKEV----------KHFALDKSSWAY  293 (438)
T ss_pred             cch--------HHH--HHHHHccCchHH---HHHHHHHHHHHHHHHHHHhHHHHHHHc----------cCCChhhHHHHH
Confidence            000        000  011233333222   222233333445566777788777443          468888889988


Q ss_pred             HHHHcchhhHHHHHHHHHHhhchh
Q 015136          335 FLASLGELPGLVLAGIIVDRAGRK  358 (412)
Q Consensus       335 ~~~~~~~~~g~~~~g~l~dr~grr  358 (412)
                      .+..+.++++++++|+++||++++
T Consensus       294 ~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       294 FLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            899999999999999999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.96  E-value=5.7e-27  Score=213.58  Aligned_cols=291  Identities=29%  Similarity=0.373  Sum_probs=247.1

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  109 (412)
                      +.+..+....+....++..|.+.+++|.++++.++..+...++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            44566777788888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      .++++.+++.|++.|++.+.. +...+++.|++|+|+|++.+++.+...++|..+++.+++.+.+..+||+.+++.++..
T Consensus        84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (352)
T cd06174          84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG  163 (352)
T ss_pred             hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999998 8888999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhccc
Q 015136          189 FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSG  268 (412)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (412)
                      ++..+...+.+                                                                     
T Consensus       164 ~~~~~~~~~~~---------------------------------------------------------------------  174 (352)
T cd06174         164 LLLALLLLFLL---------------------------------------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHH---------------------------------------------------------------------
Confidence            76655544432                                                                     


Q ss_pred             ccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHH
Q 015136          269 FSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLA  348 (412)
Q Consensus       269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  348 (412)
                                   +..+......+...........+.+.+.++.          .|.++.+.+.......++.++++++.
T Consensus       175 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~  231 (352)
T cd06174         175 -------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV----------LGLSAAEAGLLLSLFGLGGILGALLG  231 (352)
T ss_pred             -------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0112223333333444455555555555332          25788889999999999999999999


Q ss_pred             HHHHHhhchhh-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          349 GIIVDRAGRKL-SLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       349 g~l~dr~grr~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +++.||++||+ .+..+..+..++.+.+...++.+...+..++.+++.+...+...++..|..|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  296 (352)
T cd06174         232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPP  296 (352)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH
Confidence            99999999999 99999999999988888777777777788888888888899999999998873

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.96  E-value=1.2e-26  Score=216.04  Aligned_cols=315  Identities=17%  Similarity=0.149  Sum_probs=220.8

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcch-----hHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015136           29 YAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSA-----ESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI  103 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  103 (412)
                      .++++.++.........+.+|.+.+++|.+..+     .|++.+++.++..+++++.|+++||+|||++++.+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            345566667777778888999999999998765     488999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          104 GLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       104 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      .++....++++.+++.|++.|++.+..+....++.|.+|+++|+++.++......+|..++|.+++.+.+..+||+.|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  177 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI  177 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            98888899999999999999998654466667888999999999999999999999999999999999998999999999


Q ss_pred             HHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          184 SSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      .++..++..+ ..++.+|+++... +++..+.++                                              
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------------------------------  210 (408)
T PRK09874        178 TASVLFLCFLVTLFCIRENFQPVS-KKEMLHMRE----------------------------------------------  210 (408)
T ss_pred             HHHHHHHHHHHHHHHhccCccccc-chhhhHHHH----------------------------------------------
Confidence            8877666544 3445555432100 000000000                                              


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCC---cchHHHHHHHHc
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHD---SSLYLSVFLASL  339 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  339 (412)
                              ..+.+.+++..+........   ..........+.+.|..+..          +...   ...+......++
T Consensus       211 --------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~l  269 (408)
T PRK09874        211 --------VVTSLKNPKLVLSLFVTTLI---IQVATGSIAPILTLYVRELA----------GNVSNIAFISGMIASVPGV  269 (408)
T ss_pred             --------HHHhCcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHH
Confidence                    00111112222211111111   11111222223333332211          1111   123445556677


Q ss_pred             chhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          340 GELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       340 ~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +.+++.+..|++.||++||+.+..+..+..++.+.+.+.++.+...+..++.+++.+...+...+...+..|
T Consensus       270 ~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (408)
T PRK09874        270 AALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSS  341 (408)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCC
Confidence            888889999999999999999998888877777766665565656666667777777777777666555444

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=1.5e-26  Score=214.30  Aligned_cols=301  Identities=13%  Similarity=0.049  Sum_probs=202.8

Q ss_pred             hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---hc-chhHHHHHHH
Q 015136           44 LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---AF-SPNYISLVTL  119 (412)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~-~~~~~~~~~~  119 (412)
                      .....+.+.+++|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++   +. .++++.+++.
T Consensus        32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  111 (402)
T TIGR00897        32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF  111 (402)
T ss_pred             HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence            3345566778999999999999999999999999999999999999999999999998887654   23 3578888999


Q ss_pred             HHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HH
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGS-IFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-YS  196 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~  196 (412)
                      |++.|++.+.. +...+.+.+++|+++|++++|+.+.+.++|. .++|.+++.+.+..||+..++.......+..+. .+
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  191 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF  191 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence            99999998776 6667788899999999999999999999997 689999999888889766655443333322222 33


Q ss_pred             hccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhcc
Q 015136          197 LAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLF  276 (412)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (412)
                      +.++.++.. +++++++.+                                           +        ..+.++.++
T Consensus       192 ~~~~~~~~~-~~~~~~~~~-------------------------------------------~--------~~~~~~~~~  219 (402)
T TIGR00897       192 SNKDIFTPQ-HMQTREKFS-------------------------------------------E--------LGKAATILF  219 (402)
T ss_pred             ccCCCCCcc-cccCCcchh-------------------------------------------h--------HHHHHHHHH
Confidence            333321100 000000000                                           0        000223344


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhc
Q 015136          277 SSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAG  356 (412)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g  356 (412)
                      +++..   +......++....+++...+.|.|.++           .|.++.+.+.......++.+++++..|+++||++
T Consensus       220 ~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~  285 (402)
T TIGR00897       220 TNPNV---LLGGMVRIINTIGLFGFAVFLPMFVAE-----------LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLG  285 (402)
T ss_pred             cChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44332   333334444556667777778877633           4688888888888888999999999999999999


Q ss_pred             hhhHHH-HHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          357 RKLSLT-IMLILVFICILPLAM-----LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       357 rr~~l~-~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ||+.+. .+.+..+++.+.+..     .++.+...+..++.+++.+...+. .....|..|
T Consensus       286 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~  345 (402)
T TIGR00897       286 WMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP  345 (402)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc
Confidence            887664 333333333333221     123344445566666666555443 344556554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.3e-26  Score=211.78  Aligned_cols=276  Identities=20%  Similarity=0.297  Sum_probs=220.3

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhhhcCc
Q 015136           52 KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP--NYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~  129 (412)
                      ..++++|+++.+++.+.+..|+.+++++.|++.||+|-|+++..+.++.++++++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            346889999999999999999999999999999999999999999999999999987764  456778999999999999


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHH-HhccCCchhhh
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT-LNWRWLLALSSIPSFAVLLLY-SLAPESPRYLN  206 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  206 (412)
                      . |....+.++|.|+++|++..++..++..+|.+++.++++++.+. +||++.|++.++.+++..+++ ++..|+|.. .
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-h  223 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-H  223 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-C
Confidence            8 99999999999999999999999999999999999999999998 999999999999999886665 455666652 1


Q ss_pred             hcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHH
Q 015136          207 VKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLL  286 (412)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  286 (412)
                      +.-..+|.+...+    .+..+                 .                 ..+....+++++++.+   .++.
T Consensus       224 ~~is~~El~~I~~----~k~~~-----------------~-----------------~~~~~~vP~~~i~ts~---~vwa  262 (466)
T KOG2532|consen  224 PNISEKELKYIEK----GKSEA-----------------H-----------------VKKKPPVPYKAILTSP---PVWA  262 (466)
T ss_pred             CCCCHHHHHHHHh----ccccc-----------------c-----------------cCCCCCCCHHHHHcCH---HHHH
Confidence            1111122111111    00000                 0                 0000123788888775   4456


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhch---------
Q 015136          287 LWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGR---------  357 (412)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr---------  357 (412)
                      .++..++..+.++.+..+.|.|+++.          .|++..+.|+..++..+...+..+++|.++||..+         
T Consensus       263 i~~~~f~~~~~~~~l~~y~PtY~~~V----------L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r  332 (466)
T KOG2532|consen  263 IWISAFGGNWGFYLLLTYLPTYLKEV----------LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR  332 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHH----------hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence            66777778889999999999998766          58999999999999999999999999999999754         


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhh
Q 015136          358 KLSLTIMLILVFICILPLAMLQ  379 (412)
Q Consensus       358 r~~l~~~~~~~~~~~~~l~~~~  379 (412)
                      |..-.++....+++++.+.+.+
T Consensus       333 kifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  333 KIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             HHHHhHHHHHHHHHHHeeeecC
Confidence            4444566777777777777644

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=1.5e-26  Score=211.19  Aligned_cols=305  Identities=15%  Similarity=0.170  Sum_probs=219.1

Q ss_pred             HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhHH-HHHHHHHHHHHHHhhcc---hh
Q 015136           42 MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-----GRKKGF-LGIAMITSGIGLLSAFS---PN  112 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~~-~~~~~~~~i~~~~~~~~---~~  112 (412)
                      ...++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||.+ +.+.++.++.....++.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999755 455555 99999999998     899974 56777777776666666   45


Q ss_pred             HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHH
Q 015136          113 YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN--------WRWLLAL  183 (412)
Q Consensus       113 ~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--------w~~~~~~  183 (412)
                      .+.+....++.+.+.+.. +...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+..+        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            666777777888887777 7888999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHHHh-ccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          184 SSIPSFAVLLLYSL-APESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       184 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      .++..++..+..++ .+|+++.   +++.++.++.                                             
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~---------------------------------------------  194 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQED---ASVPKPLTQA---------------------------------------------  194 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcc---cccchhHHHH---------------------------------------------
Confidence            88877665544443 4553221   0000000000                                             


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHH-cch
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLAS-LGE  341 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  341 (412)
                           ....++++++++..+..+......+.....++....+.+.|.++           .|.++.+.+......+ +..
T Consensus       195 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~g~~~~~~g~~~~~~~~~~~  258 (356)
T TIGR00901       195 -----VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-----------MGFSKEEIALVAKINGLLGA  258 (356)
T ss_pred             -----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHhHHHHHHHH
Confidence                 00023333443332233334444444456666666677766633           3688888887776655 567


Q ss_pred             hhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          342 LPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML-----------QSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       342 ~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      +++.+++|++.||+|||+.+..+.++.++...++.+.           ++.+......++.+++.+...+...++..|.+
T Consensus       259 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  338 (356)
T TIGR00901       259 ILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS  338 (356)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            8999999999999999999888888877766655442           22344455566667888888999999999998


Q ss_pred             CC
Q 015136          411 GW  412 (412)
Q Consensus       411 P~  412 (412)
                      |+
T Consensus       339 p~  340 (356)
T TIGR00901       339 NP  340 (356)
T ss_pred             CC
Confidence            85

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.96  E-value=6.5e-33  Score=261.33  Aligned_cols=345  Identities=30%  Similarity=0.468  Sum_probs=241.3

Q ss_pred             HHHHHHHhhHHHhhhhhhhhhh--hhcCCCc---------chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           31 GLAVFAEAMEIMILSFIGPAVK--SEWGVSP---------SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~---------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      .++.+..+++....+...+...  .+++.+.         .+.++..+...+|..+|+++.|+++||+|||+.++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3445667777766666555444  2222222         2468899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcch---hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015136          100 TSGIGLLSAFSP---NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL  175 (412)
Q Consensus       100 ~~i~~~~~~~~~---~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  175 (412)
                      ..++.++.++++   +++.+.++|++.|++.|.. +....++.|..|+++|++..++.+.+..+|..++..++..+.+..
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   9999999999999999998 889999999999999999999999999999999888876664433


Q ss_pred             ---ChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          176 ---NWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       176 ---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                         +||..+.+..++.++..+..+++||+|+|+..++|.+|+++..++.++.+..+.+.++       +.++.++.++. 
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~-  237 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEE-------IKAEKKESQES-  237 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccc-------ccccccccccc-
Confidence               4999999999988877777789999999999999999988887764433111111000       00000000000 


Q ss_pred             Ccccchhhhhhhhcccccchhhccchhh-HHHHHHHHHHHHHHHHHH-HHHHHhhhcccccccccccccccccCCCCcch
Q 015136          253 PLLTSSRIRITKLKSGFSSFLLLFSSRL-VRTTLLLWMLFFGNSFTY-YGIILMTSKLSSTQSKCGTTLTVSQSMHDSSL  330 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (412)
                                      ...++++++.+. +++............+.. +....+.+.+.++           .+.+..  
T Consensus       238 ----------------~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-----------~~~~~~--  288 (451)
T PF00083_consen  238 ----------------KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-----------AGISNS--  288 (451)
T ss_pred             ----------------ceeeeeccccccccccccccccccccccccccccccccccccccc-----------cccccc--
Confidence                            025555665432 334444444333333333 3333444444422           234443  


Q ss_pred             HHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH--h---hhh----hHHHHHHHHHH-HHHHhhHhH
Q 015136          331 YLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLA--M---LQS----NILITGLLVGA-RMFAFGAFT  400 (412)
Q Consensus       331 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~--~---~~~----~~~~~~~~~~~-~~~~~~~~~  400 (412)
                      ........+...++.+++.++.||+|||++++.+..+++++.+.+.  .   ...    ......+..+. ..+..+..+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~  368 (451)
T PF00083_consen  289 FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGP  368 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccc
Confidence            3344455677788888888999999999999999988888877774  1   222    12222222222 233335678


Q ss_pred             HHHhhccCCCCC
Q 015136          401 IACIFTPEQLGW  412 (412)
Q Consensus       401 ~~~~~~~e~~P~  412 (412)
                      ..+.+++|++|+
T Consensus       369 ~~~~~~~ElfPt  380 (451)
T PF00083_consen  369 LPWIYTAELFPT  380 (451)
T ss_pred             cccccccccccc
Confidence            888999999996

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=9.7e-27  Score=212.28  Aligned_cols=293  Identities=17%  Similarity=0.193  Sum_probs=213.1

Q ss_pred             HHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015136           41 IMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR  120 (412)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  120 (412)
                      ....++..|.+.+++|+|+++.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~   94 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGT   94 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999888888777 778899999999


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHh
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL--NWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      ++.|++.+.. +....++.|++| ++|++++++.+...++|..+++.+.+.+.+..  +||+.|.+.++..++..  ..+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~  171 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAW  171 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence            9999999886 666677778775 68999999999999999999999999887764  39999887765443332  223


Q ss_pred             ccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccc
Q 015136          198 APESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFS  277 (412)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  277 (412)
                      +|+.++    +++.+             .                +   .. .                   .+.+++++
T Consensus       172 ~~~~~~----~~~~~-------------~----------------~---~~-~-------------------~~~~~~~~  195 (355)
T TIGR00896       172 IPQVRR----RVAAN-------------Q----------------T---TT-R-------------------LTPVRIWR  195 (355)
T ss_pred             hhhhcc----ccCCC-------------C----------------C---CC-C-------------------CCCchhhc
Confidence            343321    00000             0                0   00 0                   01122233


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhh-c
Q 015136          278 SRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRA-G  356 (412)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g  356 (412)
                      ++..+   ......+.....++....+.|.+.++           .|.+..+.+...+...++.++++++.|++.||+ +
T Consensus       196 ~~~~~---~~~~~~~~~~~~~~~~~~~lp~~~~~-----------~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~  261 (355)
T TIGR00896       196 SPLAW---QVTVFFGLQSGLYYSLIGWLPAILIS-----------HGASAATAGSLLALMQLAQAASALLIPALARRVKD  261 (355)
T ss_pred             CHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcc
Confidence            32222   22223334445566666777776643           368888899999999999999999999999999 5


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccC
Q 015136          357 RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE  408 (412)
Q Consensus       357 rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  408 (412)
                      ||+.+.++..+.+++.+.+.+..+.... ....+.+++.+..++...+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~  312 (355)
T TIGR00896       262 QRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGL  312 (355)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHH
Confidence            6667777777777777666654433222 23456677777777776555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.2e-26  Score=212.25  Aligned_cols=337  Identities=19%  Similarity=0.277  Sum_probs=241.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhh-hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILS-FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      .+.++..+++.++....+...++ ..+..+.+|.+....+.+.+.++++++++++.++++.|.||++..+.+....++++
T Consensus        43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHH
Confidence            34455555666666666655444 23344668999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH------hc
Q 015136          102 GIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM------IT  174 (412)
Q Consensus       102 i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~  174 (412)
                      +..++....+|++.+++.|++.|+.++.. |....++..|+.+++|++.++++.+..++|.++|.+++..+.      ..
T Consensus       123 ~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  123 LFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            98888888999999999999999999998 999999999999999999999999999999999999998863      34


Q ss_pred             CChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCC
Q 015136          175 LNWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTP  253 (412)
Q Consensus       175 ~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (412)
                      .||||.|++.+++.++. +++.+++|+.|.... -..++|..-..++.+..+....                    +++ 
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-fl~~~ek~~~~~~~~~~~~~~~--------------------~~~-  260 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-FLTDEEKELVVERLRESPSGGI--------------------ENK-  260 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhcc-ccchHHHHHHHHHHHhccCCCc--------------------ccc-
Confidence            68999999999888876 556788999886221 1111111111111110000000                    000 


Q ss_pred             cccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHH
Q 015136          254 LLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLS  333 (412)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (412)
                                      .+++++++.-..+.++..+++.++.....+++..|+|.+.++.          .|++..++..+
T Consensus       261 ----------------~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~----------~~~s~~~a~~l  314 (495)
T KOG2533|consen  261 ----------------FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN----------GGYSELQANLL  314 (495)
T ss_pred             ----------------cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcC----------CCcChHHhccc
Confidence                            1233333333345667788888888899999999999998662          36888999999


Q ss_pred             HHHHHcchhhHHHHHHHHHHh----hchhhHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhcc
Q 015136          334 VFLASLGELPGLVLAGIIVDR----AGRKLSLTIMLILVFICI-LPLAMLQSNILITGLLVGARMFAFGAFTIACIFTP  407 (412)
Q Consensus       334 ~~~~~~~~~~g~~~~g~l~dr----~grr~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (412)
                      .++..++++++.+++|+++||    ..+|........+..+.. +.+..................+.....+.....++
T Consensus       315 s~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s  393 (495)
T KOG2533|consen  315 STPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTS  393 (495)
T ss_pred             cchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhcc
Confidence            999999999999999999999    556666555554444433 44444432333333333333333333444444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=4.5e-26  Score=212.52  Aligned_cols=369  Identities=14%  Similarity=0.103  Sum_probs=263.2

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      ...+-|.+.+..++..+........++.+.+.++++++.+.++++|+.++....+.+.+|+.+.+.||+|.|.+.+.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            46678888888888888888778888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhHHHHHHH-HHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136           99 ITSGIGLLSAFSPNYISLVTL-RGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~-r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      +.+++.++.++++++|.+++. -++.|+|.|+. ......+. .+++|+|+.+.|+...+.++|..+-|.+...+.+.+|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            999999999999999988876 58899999998 44444444 6677999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccC-CchhhhhcCChHHHHHHHHHHHHhhCCCCCCCcccccc-CCCCCcccCCCCCCCc
Q 015136          177 WRWLLALSSIPSFAVLLLYSLAPE-SPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDA-TSRPDEELAPPDNTPL  254 (412)
Q Consensus       177 w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  254 (412)
                      ||+.+++.+.+.+-.++.....++ +++..   +..++..+.     .....+.......... +++.............
T Consensus       199 ~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (509)
T KOG2504|consen  199 WRGALLIFGGISLNVLVAGALLRPLSPPKK---PNEEKDLRN-----SAASVESTPKPVELRISERDSGLKKLSLSNLAT  270 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---chhhhhhcc-----ccccccccccccccccccCCCCCCcccccchhh
Confidence            999999998877655555444433 33211   111110000     0000000000000000 0000000000000000


Q ss_pred             ccchhhhhhh--hcccccc--hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcch
Q 015136          255 LTSSRIRITK--LKSGFSS--FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSL  330 (412)
Q Consensus       255 ~~~~~~~~~~--~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (412)
                      .+.. .++.+  ..+....  -.++++.   +.++...+...+..+.++....+++.+.++           .+++..++
T Consensus       271 ~~~~-~~~~~~~~~~~~~~~~d~~ll~~---~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-----------~g~~~~~a  335 (509)
T KOG2504|consen  271 LKRG-PDKWRNSPLQAFLSMLDLSLLKD---PKFLLLALSNLFAYLGFNVPFVYLPSYAKS-----------LGLSSNDA  335 (509)
T ss_pred             hhhC-CccccccchhhhhhhhhHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cCCChhhh
Confidence            0000 00000  0000001  0233333   344555556666777888888888888753           46999999


Q ss_pred             HHHHHHHHcchhhHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccC
Q 015136          331 YLSVFLASLGELPGLVLAGIIVDRAG--RKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPE  408 (412)
Q Consensus       331 ~~~~~~~~~~~~~g~~~~g~l~dr~g--rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  408 (412)
                      +...++.++.+++++++.|++.|+..  ++.+..++.+..+++.+...+.++.+.+.....+.|++.+.........+.|
T Consensus       336 a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~  415 (509)
T KOG2504|consen  336 AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVD  415 (509)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999977  5666677778888888777788888888888999999888888777777666


Q ss_pred             CCC
Q 015136          409 QLG  411 (412)
Q Consensus       409 ~~P  411 (412)
                      +.+
T Consensus       416 ~~g  418 (509)
T KOG2504|consen  416 LVG  418 (509)
T ss_pred             HcC
Confidence            553

>PRK10054 putative transporter; Provisional

Probab=99.95  E-value=1.1e-25  Score=207.62  Aligned_cols=311  Identities=12%  Similarity=0.022  Sum_probs=215.9

Q ss_pred             HHHHHhhHHHhhhhhh-hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch
Q 015136           33 AVFAEAMEIMILSFIG-PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        33 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  111 (412)
                      ..++.....+...+.. +.+.+++|+|.+++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++..+++
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~   94 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555544 456678999999999999999999999999999999999999999999999999998889999


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      +++.+++.|.+.|.+.+.. +...++..|..|+++|+++.++.....++|.+++|.+++.+.+ .+|+..|++.++..++
T Consensus        95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i  173 (395)
T PRK10054         95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF  173 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence            9999998998888877766 7778889999999999999999999999999999999998875 7999999988877666


Q ss_pred             HHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccc
Q 015136          191 VLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGF  269 (412)
Q Consensus       191 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (412)
                      ..+ ..+++||+++.    +++++ ++.                                                    
T Consensus       174 ~~i~~~~~~~~~~~~----~~~~~-~~~----------------------------------------------------  196 (395)
T PRK10054        174 PLVFIQIWVQRSEKA----IATET-GSV----------------------------------------------------  196 (395)
T ss_pred             HHHHHHHHHhccccc----cccch-hhh----------------------------------------------------
Confidence            543 34445554320    00000 000                                                    


Q ss_pred             cchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHH
Q 015136          270 SSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAG  349 (412)
Q Consensus       270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g  349 (412)
                      .+.++.++++..+.....   .++..+.+.....+.+.+....        ++.+.+....+.......+..+..+...|
T Consensus       197 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  265 (395)
T PRK10054        197 WSPSVLLQDKALLWFTCS---GFLASFVSGAFASCISQYVMVV--------ADSDFAEKVVAVVLPVNAAMVVSLQYSVG  265 (395)
T ss_pred             hhhhhhccCceehHHHHH---HHHHHHHHHHhhhhHHHHHHHh--------cccchHHHHHHHHHHhhhhheeeehhHHH
Confidence            011122222222222221   1111111111111222222100        12245555667777777777778888999


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          350 IIVDRAGRKLSLTIMLILVFICILPLAML-QSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       350 ~l~dr~grr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.||.++|+.+..+..+.+++.+.+.+. ++.+...+...+.+++.....|....++.+..|+
T Consensus       266 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~  329 (395)
T PRK10054        266 RRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP  329 (395)
T ss_pred             HHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc
Confidence            99999999999988888888877766653 3444444556666777666667777777666663

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=4.3e-25  Score=204.03  Aligned_cols=296  Identities=13%  Similarity=0.061  Sum_probs=209.8

Q ss_pred             hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           44 LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      ++...+.+.+++|.|+.++|++.+...++..+.+++.|+++||+|||++++.+.++.+++.+.+...++++.+++.|++.
T Consensus        30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  109 (400)
T PRK11646         30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS  109 (400)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33444567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-HHHhccCC
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLL-LYSLAPES  201 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~  201 (412)
                      |++.+.. +...+++.|++|+++|++++++.....++|..+||.+++.+. ..+||+.|++.++..++..+ ..++.||.
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            9998877 777888999999999999999999999999999999999998 67999999988776665533 33444442


Q ss_pred             chhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhH
Q 015136          202 PRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLV  281 (412)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  281 (412)
                      +.    ++..++.+                                                      .+++++++++..
T Consensus       189 ~~----~~~~~~~~------------------------------------------------------~~~~~~~~~~~~  210 (400)
T PRK11646        189 KL----STVRTPVR------------------------------------------------------EGMTRVLRDKRF  210 (400)
T ss_pred             cc----cccchhhH------------------------------------------------------HHHHHHHcCchH
Confidence            10    00000000                                                      022223333322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHH-hhchhhH
Q 015136          282 RTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVD-RAGRKLS  360 (412)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~d-r~grr~~  360 (412)
                      .......   +...........+.|.+.++.           +.++.+.+.......+....+....+++.| |++.++.
T Consensus       211 ~~~~~~~---~~~~~~~~~~~~~~p~~~~~~-----------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~  276 (400)
T PRK11646        211 VTYVLTL---TGYYMLAVQVMLMLPIMVNDI-----------AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR  276 (400)
T ss_pred             HHHHHHH---HHHHHHHHHHHHhhhhhHHhh-----------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            2221111   111112222334566655433           245667777777777666655555555554 5666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          361 LTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       361 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +..+..+.+++.+.+...++.+...+...+.+.+.+...|...++..|..|+
T Consensus       277 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~  328 (400)
T PRK11646        277 LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADA  328 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc
Confidence            7777777777776666655555554555556666666677778888887773

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.6e-27  Score=206.29  Aligned_cols=364  Identities=21%  Similarity=0.281  Sum_probs=259.9

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhc-C-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEW-G-------VSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK   91 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~   91 (412)
                      .+++...+.+...+.+.+.++..+++.+.|.+...| |       +++...+.+..+.++|..+|+++.|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            566777888889999999999999999998887665 2       45667789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcch-------hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHH
Q 015136           92 GFLGIAMITSGIGLLSAFSP-------NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIF  163 (412)
Q Consensus        92 ~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (412)
                      ++...++++.+++++++.+.       -.+++.+.|++.|+|.|.- |...+..+|....++||...+...+..++|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999998777643       2567889999999999998 888899999999999999999999999999888


Q ss_pred             HHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCCh-HHHHHHHHHHHHhhCC
Q 015136          164 EAALAWIVMIT---------------LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRT-TEARNILDKIALLNKA  227 (412)
Q Consensus       164 ~~~~~~~l~~~---------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  227 (412)
                      |.+++..+..-               .=||..+.+.+++++.++...+.+||++++.....++ +++.   ++.    .+
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~----~k  268 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDM----KK  268 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcc----cc
Confidence            88777665431               1299999999999998888888999999876333222 1111   000    00


Q ss_pred             CCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015136          228 KLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (412)
                      ..         +.+.++++......+.          .++.+..+...+..++.+..+..+..|+.....+|+...+...
T Consensus       269 ~~---------~~~~~~~~~~~~~~~~----------~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~  329 (538)
T KOG0252|consen  269 VL---------SVDIEAESTAESDVPP----------PSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSV  329 (538)
T ss_pred             cc---------ccccchhhccccCCCC----------cccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHH
Confidence            00         0000111100000000          0111123444444446678888899999999999999999988


Q ss_pred             ccccccccccccccccCCCC-cchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhh----H
Q 015136          308 LSSTQSKCGTTLTVSQSMHD-SSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSN----I  382 (412)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~----~  382 (412)
                      .++..++.+..-..  + .. ..+-....+.....++|..+..+++|++||++..+.+++++.+..+.+....+.    .
T Consensus       330 I~~~ig~~~~~~~~--~-~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~  406 (538)
T KOG0252|consen  330 IFSAIGVIPSANTY--H-ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTI  406 (538)
T ss_pred             HHHhhccCCCcchH--H-HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccC
Confidence            88766533311000  0 00 012223344455566688888899999999999999999999999998874431    1


Q ss_pred             HH-HHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          383 LI-TGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       383 ~~-~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .. +...+...++..+.......+.+|++|+
T Consensus       407 Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  407 GFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             ceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            22 2223333444556677888899999985

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=3.7e-25  Score=204.36  Aligned_cols=306  Identities=14%  Similarity=0.127  Sum_probs=192.6

Q ss_pred             HHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHH-HHHHHHHHHHHHHhhcc
Q 015136           34 VFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFA-GNLVGVYLWGLLSDNYGRKKGF-LGIAMITSGIGLLSAFS  110 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~i~~~~~~~~  110 (412)
                      .+..........+..|. +.+++|.|++++|++.+...+ ++.++.+..++ +||+||||.+ +.+.++.+++..+.+++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555554 678899999999999876655 55566655566 9999999875 45566666777777888


Q ss_pred             hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015136          111 PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKR--GMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP  187 (412)
Q Consensus       111 ~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~  187 (412)
                      ++++.+++.+.+.|...+.. +...+++.|+.+++.|  +...++.+.+.++|.+++|++++.+.+++|||..|+..++.
T Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~  182 (393)
T PRK15011        103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA  182 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence            99988766554444333444 7777777787766655  34457888999999999999999999999999999998877


Q ss_pred             HHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhc
Q 015136          188 SFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLK  266 (412)
Q Consensus       188 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (412)
                      .++..+ .++++||.++.   +++.+   +                        +.+                       
T Consensus       183 ~~~~~~~~~~~~~~~~~~---~~~~~---~------------------------~~~-----------------------  209 (393)
T PRK15011        183 FIVCGVMVWLFLPSMRKE---LPLAT---G------------------------TLE-----------------------  209 (393)
T ss_pred             HHHHHHHHHhhcCccCCC---Ccccc---c------------------------ccc-----------------------
Confidence            665543 45556765421   00000   0                        000                       


Q ss_pred             ccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHH
Q 015136          267 SGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLV  346 (412)
Q Consensus       267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  346 (412)
                          ..++  +++...........   ....++....+.|.|.++          +.|.++.+.+.......++.+++++
T Consensus       210 ----~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~----------~~~~~~~~~g~~~~~~~~~~i~~~~  270 (393)
T PRK15011        210 ----APRR--NRRDTLLLFVICTL---MWGTNSLYIINMPLFIIN----------ELHLPEKLAGVMMGTAAGLEIPTML  270 (393)
T ss_pred             ----cccc--ccccHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                0000  00101111111111   112233333455555432          2467777888877777777888999


Q ss_pred             HHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          347 LAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       347 ~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +.|+++||++||+.+..+.....+....+...++.+...+..++.++..+...+....+..|.+|+
T Consensus       271 ~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~  336 (393)
T PRK15011        271 IAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG  336 (393)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999888777666555544444344444444444444444455555556666777663

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=3.4e-25  Score=203.79  Aligned_cols=309  Identities=15%  Similarity=0.013  Sum_probs=225.6

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH----HHHHHHHHHHHH
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGF----LGIAMITSGIGL  105 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~----~~~~~~~~i~~~  105 (412)
                      +.+.++..+.......+++|.+.+++|.|.+++|++.+++.+...++++++|+++||+|||...    ..+..+..+  .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            3455666666678888899999999999999999999999999999999999999999985433    222222222  2


Q ss_pred             HhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015136          106 LSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALS  184 (412)
Q Consensus       106 ~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~  184 (412)
                      ....+++++.+++.|.++|.+.+.. +...++..++  +++|+++.|......++|.+++|++++.+.+++|||..|.+.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3346789999999999999888877 7766666543  578899999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          185 SIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      ....++.. ..+..+|+++.   +++.++.                               +.                 
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~---~~~~~~~-------------------------------~~-----------------  192 (382)
T TIGR00902       165 TAGLAFML-IGFLIKPTIPP---KDAIPED-------------------------------ES-----------------  192 (382)
T ss_pred             HHHHHHHH-HHHHcCCCCCC---Ccccccc-------------------------------cc-----------------
Confidence            65433222 23333333210   0000000                               00                 


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                        ++.++.+++++++..+...+...   ...........+.+.+.++           .|.++...+.......+..+++
T Consensus       193 --~~~~~~~~~l~~~~~~~~l~~~~---l~~~~~~~~~~~~~~~l~~-----------~g~s~~~~g~l~~~~~~~~i~~  256 (382)
T TIGR00902       193 --QGDSAFIALLKNPMNLRFLAAVC---LIQGAHAAYYGFSAIYWQA-----------AGISASATGLLWGIGVLAEIII  256 (382)
T ss_pred             --ccchhHHHHHcChHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------CCCCHhHHHHHHHHHHHHHHHH
Confidence              00013344455544433333322   2333444444455655533           4688899999999999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ..+.+++.||+|+|+.+.++.+...+....+.+.++.+.+.....+-++..+...+....++.+. |
T Consensus       257 ~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~  322 (382)
T TIGR00902       257 FAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-P  322 (382)
T ss_pred             HHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            99999999999999999999999999999888888877777788888888888888888888776 5

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.94  E-value=8.1e-25  Score=201.40  Aligned_cols=304  Identities=11%  Similarity=0.026  Sum_probs=212.2

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch----hHHHHHHHHHHHHHHHhhc
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRK----KGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~~~  109 (412)
                      ++..........+.+|.+.+++|.|.+++|++.+++.++..+++++.|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445567788888999999999999999999999999999999999999999994    3333332222  2223344


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      .++++.+++.|++.|++.+.. +...+++.++  .++|+++.+......++|..+||++++.+.+++|||..|++.++..
T Consensus        91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            688999999999999988877 7666666655  4668888999999999999999999999999999999998877654


Q ss_pred             HHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhccc
Q 015136          189 FAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSG  268 (412)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (412)
                      ++..+..++.||.++    ++++++                             +    ..                 +.
T Consensus       169 ~~~~~~~~~~~~~~~----~~~~~~-----------------------------~----~~-----------------~~  194 (382)
T PRK11128        169 ASMLLGQLLRPTIMP----QGESRQ-----------------------------Q----ES-----------------AG  194 (382)
T ss_pred             HHHHHHHHccCCCCC----cccccc-----------------------------c----cc-----------------cc
Confidence            444333333333211    000000                             0    00                 00


Q ss_pred             ccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHH
Q 015136          269 FSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLA  348 (412)
Q Consensus       269 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  348 (412)
                      ..+++++++++..+.........   ...+.....+.+.|..           +.|.++.+.+.......++.++...+.
T Consensus       195 ~~~~~~i~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~-----------~~g~s~~~~g~~~~~~~~~~~~~~~~~  260 (382)
T PRK11128        195 WPAWKALLKEPTVWRFLLCVSLL---QGSHAAYYGFSAIYWQ-----------AAGYSASTIGYLWSLGVVAEVLIFAFS  260 (382)
T ss_pred             cchHHHHHcChhHHHHHHHHHHH---HHHhHhHHHHHHHHHH-----------HCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            01445555554443333322222   2222233333444442           246788888988888888999999999


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCC
Q 015136          349 GIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQ  409 (412)
Q Consensus       349 g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  409 (412)
                      +++.||+++|+.+..+.+..+++.+.+...++.+...+..++.+++.+...+....+..+.
T Consensus       261 g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  321 (382)
T PRK11128        261 NRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR  321 (382)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999998888887777777767666667777777776666666665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=1.6e-24  Score=204.75  Aligned_cols=276  Identities=20%  Similarity=0.210  Sum_probs=193.9

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhH-HHHHHHHHHHH
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-----GRKKG-FLGIAMITSGI  103 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~i~  103 (412)
                      +++..+..+......+...|.+.++.|.|.++++.. +.....+ ++.+++|+++||+     |||+. ++.+.++.+++
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~   94 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVA   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHH
Confidence            334455666667778888999999999999999997 4444444 6899999999999     99986 55777777777


Q ss_pred             HHHhhcc---hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCChH
Q 015136          104 GLLSAFS---PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-TLNWR  178 (412)
Q Consensus       104 ~~~~~~~---~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~  178 (412)
                      ...+++.   ++++.+.+.+++.|++.+.. +...++..|++|+++|+++.++...+..+|.++++.++..+.+ ..|||
T Consensus        95 ~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr  174 (491)
T PRK11010         95 IAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ  174 (491)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence            7666664   47888888999999998887 7888999999999999999999999999999999999999998 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccch
Q 015136          179 WLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSS  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (412)
                      ..|++.++..++..+..++.||+++..   +++++.++.                                         
T Consensus       175 ~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~~~~~-----------------------------------------  210 (491)
T PRK11010        175 GMYWLMAALLIPCIIATLLAPEPTDTI---PVPKTLEQA-----------------------------------------  210 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccc---ccccchhhh-----------------------------------------
Confidence            999999877776655555667754210   000000000                                         


Q ss_pred             hhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHH-HH
Q 015136          259 RIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVF-LA  337 (412)
Q Consensus       259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  337 (412)
                               ...+++++++++..+........   .....+....+.+.+..          +..|+++.+.+.... ..
T Consensus       211 ---------~~~~l~~~~~~~~~~~~ll~~~l---~~~~~~~~~~~~~~~l~----------~~~G~s~~~~g~~~~~~g  268 (491)
T PRK11010        211 ---------VVAPLRDFFGRNNAWLILLLIVL---YKLGDAFAMSLTTTFLI----------RGVGFDAGEVGLVNKTLG  268 (491)
T ss_pred             ---------HHHHHHHHHcCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------HhcCCCHHHHHHHHHHHH
Confidence                     00033334443333322222222   22222223333443331          225788888888874 55


Q ss_pred             HcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 015136          338 SLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICIL  373 (412)
Q Consensus       338 ~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~  373 (412)
                      .++.++|.+++|+++||+|+|+.+.++.++.++..+
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l  304 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNA  304 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            678999999999999999998887766665554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=1e-25  Score=217.43  Aligned_cols=303  Identities=13%  Similarity=0.125  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      +..++..+.........+..++.+.++|+++.++.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44455667777778888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcch---------------------------------------------------hHHHHHHHHHHHhhhcCcc-cccee
Q 015136          108 AFSP---------------------------------------------------NYISLVTLRGLVGIGIGSG-PVFSA  135 (412)
Q Consensus       108 ~~~~---------------------------------------------------~~~~~~~~r~l~G~~~g~~-~~~~~  135 (412)
                      ++.+                                                   .+..++++|+++|+|.+.. +...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7653                                                   2456778999999999998 89999


Q ss_pred             eeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHH
Q 015136          136 WFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL----------------------NWRWLLALSSIPSFAVLL  193 (412)
Q Consensus       136 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------~w~~~~~~~~~~~~~~~~  193 (412)
                      ++.|++|+++|++.++++..+..+|.++|+++++.+.+.+                      +||..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987643                      277778888877777655


Q ss_pred             HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchh
Q 015136          194 LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFL  273 (412)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (412)
                      .++++|++.+....+.+.++.++        +.            .++.+.  +. +. ..       ....++....++
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~--------~~------------~~~~~~--~~-~~-~~-------~~~~~~~~~~~~  324 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHET--------EK------------LEKSED--KS-RK-KN-------SDITKDFPKIIK  324 (633)
T ss_pred             HHHhCccccCCcccccchhhhhh--------hc------------cccccc--cc-ch-hh-------hhhHHHHHHHHH
Confidence            56666664321000000000000        00            000000  00 00 00       000000111344


Q ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHc-chhhHHHHHHHHH
Q 015136          274 LLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASL-GELPGLVLAGIIV  352 (412)
Q Consensus       274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~g~l~  352 (412)
                      .+++.+   .++...+..+.....++++..+.|.|+++.          .|.++.++++......+ +.++|.+++|+++
T Consensus       325 ~Ll~n~---~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~----------~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~  391 (633)
T TIGR00805       325 RLLCNP---IYMLVILAQVIDSLAFNGYITFLPKYLENQ----------YGISSAEANFLIGVVNLPAAGLGYLIGGFIM  391 (633)
T ss_pred             HHHcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHhhhhhhhHHHHHHhhhhhee
Confidence            555544   333444455555667777888888887543          57888898888877665 5689999999999


Q ss_pred             Hhhc--hhhHHHHHHHHHHHHHHH
Q 015136          353 DRAG--RKLSLTIMLILVFICILP  374 (412)
Q Consensus       353 dr~g--rr~~l~~~~~~~~~~~~~  374 (412)
                      ||++  .|+.+..+.++..++.++
T Consensus       392 ~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       392 KKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             eeecccHHHHHHHHHHHHHHHHHH
Confidence            9987  456666666665555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=1.2e-23  Score=195.10  Aligned_cols=312  Identities=18%  Similarity=0.134  Sum_probs=214.7

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----cchh-HHHHHHHHHHHHHH
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-----GRKK-GFLGIAMITSGIGL  105 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i~~~  105 (412)
                      ..++.++.........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| .++++.++.+++..
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            4466777777888889999999999999999999777776  58899999999999     8876 68888888887777


Q ss_pred             Hhhcc---hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHH
Q 015136          106 LSAFS---PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT-LNWRWL  180 (412)
Q Consensus       106 ~~~~~---~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~  180 (412)
                      ..++.   .+++.+++..++.++..+.. ++..+++.|+.|+++|+++.++...+.++|.++++.++..+.+. .|||..
T Consensus        84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~  163 (402)
T PRK11902         84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT  163 (402)
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence            76665   35777777777788777777 88889999999999999999999999999999999999998885 599999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      |++.++..++..+..++.||+++..   +++++.++.                                           
T Consensus       164 f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~~-------------------------------------------  197 (402)
T PRK11902        164 YLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGEA-------------------------------------------  197 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccc---cccchhHHH-------------------------------------------
Confidence            9998877666555555666654311   000000000                                           


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHH-c
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLAS-L  339 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  339 (412)
                             ...+++++++++..+................+..   .+.+..          ++.|.++.+.+......+ +
T Consensus       198 -------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~---~~~~l~----------~~~G~~~~~~g~~~~~~~~~  257 (402)
T PRK11902        198 -------VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL---STTFLI----------RGAGFSAGEVGIVNKTLGLA  257 (402)
T ss_pred             -------HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH---HHHHHH----------HhcCCCHHHHHHHHhHHHHH
Confidence                   0013444555554444443333322211111111   111121          224688888888775544 4


Q ss_pred             chhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH---Hhh-hhhHHHHHHH----HHHHHHHhhHhHHHHhhccCCCC
Q 015136          340 GELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPL---AML-QSNILITGLL----VGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       340 ~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l---~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +.+++.+++|++.||+|+|+.+..+..+..+..+.+   ... ++.+......    +..++..+..++....++.+.+|
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  337 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS  337 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            688999999999999999988877776655554433   232 2333333333    23445566667777888888776

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.93  E-value=1.7e-23  Score=187.85  Aligned_cols=163  Identities=15%  Similarity=0.133  Sum_probs=146.2

Q ss_pred             HHHhhhhhhhhhhhhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136           40 EIMILSFIGPAVKSEWGVSPSA-ESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT  118 (412)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  118 (412)
                      .+...+.+.|.+.+++|+|+++ .|.+.+++..++++..++.|+++||+|.|+++.++.+.+++..++.++++++..+.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788889999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH---HHHHHHHHHH
Q 015136          119 LRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS---IPSFAVLLLY  195 (412)
Q Consensus       119 ~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~---~~~~~~~~~~  195 (412)
                      .|++.|++.|...+...++.+++|+++|+++.++..++..+|.++++++++. ...+|||+.+...-   ....+.++..
T Consensus       121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a  199 (511)
T TIGR00806       121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLA  199 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999977777999999999999999999999999999999999999 55689998765442   3333446667


Q ss_pred             HhccCCch
Q 015136          196 SLAPESPR  203 (412)
Q Consensus       196 ~~~~~~~~  203 (412)
                      +++|..++
T Consensus       200 ~~LP~~~~  207 (511)
T TIGR00806       200 LFLKRPKR  207 (511)
T ss_pred             HhCCCCch
Confidence            88886554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7e-23  Score=177.73  Aligned_cols=317  Identities=16%  Similarity=0.181  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG  104 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  104 (412)
                      ..+..+...++..++......+..|.+++.|+++..|.+++...++.|+.+.+++.|++.+|+|+|+.++.|..+++++.
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44555556677788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh---cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc------
Q 015136          105 LLSA---FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT------  174 (412)
Q Consensus       105 ~~~~---~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------  174 (412)
                      .+..   ...++..++++-++.|.|.+.. ....+++....++++..+.+++.+...++|.+++|++++.+..+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            8874   5678999999999999999998 99999999999999999999999999999999999999988762      


Q ss_pred             -------------CChHHHHHHHHHHHHHHHHHHHhc--cCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccC
Q 015136          175 -------------LNWRWLLALSSIPSFAVLLLYSLA--PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT  239 (412)
Q Consensus       175 -------------~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                                   ..||.+|...+...++..+.....  |+.+....++.+                             
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~-----------------------------  223 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA-----------------------------  223 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc-----------------------------
Confidence                         137777777765555443333222  222110000000                             


Q ss_pred             CCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 015136          240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTL  319 (412)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (412)
                                                 .+.....++++.++.+...+..+++.+   .......|.+.|..+.       
T Consensus       224 ---------------------------~~~~~~~~l~~~~~~~~gvl~~FlYVG---~Eva~gsfl~~y~~~~-------  266 (422)
T COG0738         224 ---------------------------SGSAGLSSLFQNKHLRLGVLAIFLYVG---AEVAIGSFLVSYLEEL-------  266 (422)
T ss_pred             ---------------------------cccchHHHHHhChHHHHHHHHHHHHHh---HHHHHHHHHHHHHHhc-------
Confidence                                       000023445556655555555444444   3444445555555332       


Q ss_pred             ccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHh
Q 015136          320 TVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAF  399 (412)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  399 (412)
                         .|.+..++....+...++.++|++++.++..|+...+.+.+..++..+.++...+.++ ...+...++.|++.+..+
T Consensus       267 ---~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g-~v~~~~l~~ig~F~simf  342 (422)
T COG0738         267 ---LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG-VVALYALFLIGLFNSIMF  342 (422)
T ss_pred             ---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHhHHHH
Confidence               4688899999999999999999999999999999999999888887777777777666 445556778888999999


Q ss_pred             HHHHhhccCCCC
Q 015136          400 TIACIFTPEQLG  411 (412)
Q Consensus       400 ~~~~~~~~e~~P  411 (412)
                      |..++...+..|
T Consensus       343 PTIfslal~~l~  354 (422)
T COG0738         343 PTIFSLALKNLG  354 (422)
T ss_pred             HHHHHHHHhccC
Confidence            999988777665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=2.7e-23  Score=217.71  Aligned_cols=310  Identities=12%  Similarity=0.021  Sum_probs=216.2

Q ss_pred             HhhhhhhhhhhhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---hcchhHHHH
Q 015136           42 MILSFIGPAVKSEWGVSP--SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---AFSPNYISL  116 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~  116 (412)
                      .......+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.   ...++++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA  106 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            344455566666777654  346899999999999999999999999999999999887766555443   345789999


Q ss_pred             HHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--------C-ChHHHHHHHHH
Q 015136          117 VTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT--------L-NWRWLLALSSI  186 (412)
Q Consensus       117 ~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~-~w~~~~~~~~~  186 (412)
                      ++.|++.|++.+.. ++..+++.|++|+++|++++++...+.++|.++|+.+++++.+.        . +|++.+.+..+
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  186 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL  186 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence            99999999999998 88889999999999999999999999999999999999998875        2 34444444443


Q ss_pred             HHH-HHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136          187 PSF-AVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL  265 (412)
Q Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
                      ... +.++..+.+||.|.....+.+.++ ..                                          .     .
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------------------------~-----~  218 (1146)
T PRK08633        187 AVAVLGLIFAYRLPKVPAAAPEVFDKKK-YL------------------------------------------F-----P  218 (1146)
T ss_pred             HHHHHHHHHHhcCcCCCCCCcccccccc-cc------------------------------------------c-----H
Confidence            333 334444556766532110000000 00                                          0     0


Q ss_pred             cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCc-chHHHHHHHHcchhhH
Q 015136          266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDS-SLYLSVFLASLGELPG  344 (412)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g  344 (412)
                      +.....++.+++.+..+...+.....   ....+....+.+.+..+          ..|.+.. ..++......++.+++
T Consensus       219 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~g~s~~~~~g~~~~~~~ig~~~g  285 (1146)
T PRK08633        219 KLLWRNLKLLRSDRVLWLAIIGLSYF---WFISQLAQANFPAYAKE----------VLGLDNTFQVQYLLAASAIGIGIG  285 (1146)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHH---HHHHHHHHHhhHHHHHH----------HhCCCcHHHHHHHHHHHHHHHHHH
Confidence            00001334444444433332222221   22223333344444422          2467777 8899999999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .++.|++.||+++++.+.++.++.+++.+.+.+..+.+...+..++.+++.+...+...+++.+..|+
T Consensus       286 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  353 (1146)
T PRK08633        286 SLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE  353 (1146)
T ss_pred             HHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc
Confidence            99999999999999888888888888887777766666666777778887777777788888887764

>PTZ00207 hypothetical protein; Provisional

Probab=99.92  E-value=2.2e-23  Score=196.02  Aligned_cols=178  Identities=15%  Similarity=0.135  Sum_probs=140.5

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ..++|.++........+.+ ..+.++.+.|.+.+++|+|.++.+++.++. ....+++++.|++.||+|+|++++++.++
T Consensus        23 e~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll  100 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTV  100 (591)
T ss_pred             ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            3566766665555444443 446778889999999999999999998874 44566788899999999999999999999


Q ss_pred             HHHHHHHhhcc------hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          100 TSGIGLLSAFS------PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus       100 ~~i~~~~~~~~------~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      ++++.++++++      ++++.+++.|++.|+|.+.. +.....+.+++| ++||+++|+...+.++|.++.+.+...+.
T Consensus       101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999886      68999999999999999887 777777888886 78999999999999999986544444443


Q ss_pred             hcCChHHHHHHHHHHHHHHHH-HHHhccCC
Q 015136          173 ITLNWRWLLALSSIPSFAVLL-LYSLAPES  201 (412)
Q Consensus       173 ~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~  201 (412)
                      . .+|+..|++.+++.++..+ .+.++++.
T Consensus       180 ~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        180 S-DNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             H-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            3 4688888888877766543 34444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=1.3e-23  Score=219.24  Aligned_cols=323  Identities=13%  Similarity=0.001  Sum_probs=214.8

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhh-hhhhhcCCCc-chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH---HHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGP-AVKSEWGVSP-SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLG---IAMITS  101 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~  101 (412)
                      +...++..+.+.+....+..... .+..+.+.+. ...++..+++.+.+.+.++++|+++||+|||+++..   +.+...
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~   96 (1140)
T PRK06814         17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIA   96 (1140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHH
Confidence            33344444444444444333332 3444444333 457888899999999999999999999999997643   222223


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 015136          102 GIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL  180 (412)
Q Consensus       102 i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~  180 (412)
                      +..+.....++++.++++|+++|++.+.. ++..+++.+++|+++|++++|+.+++.++|.++||++++++.+..+|++.
T Consensus        97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~  176 (1140)
T PRK06814         97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL  176 (1140)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            33333334589999999999999999988 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      |+..++..++.+++.+++++++...  ++...+. ...+.                                        
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~----------------------------------------  213 (1140)
T PRK06814        177 VALLMGIAVLGWLASLFIPKTGNAA--PDLKIDR-NIIRS----------------------------------------  213 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCC--CCCeecc-chHHH----------------------------------------
Confidence            9555555555555566666653210  0000000 00000                                        


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                             ....++.+++.+..+..   .+..+...+.......+.|.|.++.          .|.++...++..+..+++
T Consensus       214 -------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~----------~g~~~~~~g~~~~~~~~g  273 (1140)
T PRK06814        214 -------TITLLKYAKADKRIWLA---ILGISWFWLVGAVVLSQLPLLAKET----------LGGDENVATLFLAVFSVG  273 (1140)
T ss_pred             -------HHHHHHHHhcCchHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH----------cCCchHHHHHHHHHHHHH
Confidence                   00023334444333332   2222223333444555666665332          468888999999999999


Q ss_pred             hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh--------------------hhhHHHHHHHHHHHHHHhhHhH
Q 015136          341 ELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML--------------------QSNILITGLLVGARMFAFGAFT  400 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~  400 (412)
                      .++|.++.|+++|+.++++.+..+.++.+++.+.+.+.                    .+.+...+..++.+++.+...+
T Consensus       274 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (1140)
T PRK06814        274 VAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV  353 (1140)
T ss_pred             HHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence            99999999999988876666555555555444433332                    4445556666777777777777


Q ss_pred             HHHhhccCCCCC
Q 015136          401 IACIFTPEQLGW  412 (412)
Q Consensus       401 ~~~~~~~e~~P~  412 (412)
                      ...+++.+..|+
T Consensus       354 ~~~~~~~~~~p~  365 (1140)
T PRK06814        354 PLFAALQAWANP  365 (1140)
T ss_pred             HHHHHHHhhCCc
Confidence            788888887764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=6e-23  Score=191.56  Aligned_cols=320  Identities=15%  Similarity=0.033  Sum_probs=188.6

Q ss_pred             HHHHhhHHHhhhhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh---c
Q 015136           34 VFAEAMEIMILSFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA---F  109 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~  109 (412)
                      .++.....+...+..| .+.+++|+|+.+.|++.+.+.++..+++++.|+++||+|||++++++..+.+++.....   .
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   98 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444 55666999999999999999999999999999999999999999887666655443221   1


Q ss_pred             chhHH-HHHHHHHHHhhhcCcc-ccceeeeeeccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136          110 SPNYI-SLVTLRGLVGIGIGSG-PVFSAWFLEFVP--AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS  185 (412)
Q Consensus       110 ~~~~~-~~~~~r~l~G~~~g~~-~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~  185 (412)
                      ++... ......++.++..+.. ......+.++.+  .+++++..|......++|..++|.+++.+.+ .+|++.|++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~  177 (420)
T PRK09528         99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGS  177 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHH
Confidence            11111 1111222233322222 222222223322  3456778889899999999999999999877 48999999888


Q ss_pred             HHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136          186 IPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL  265 (412)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
                      +..++..+..++.+++++..... ++++ +                           .+     ++              
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---------------------------~~-----~~--------------  209 (420)
T PRK09528        178 GSALILLVLLFFAKPDAPSTAKV-ANAL-G---------------------------AN-----AS--------------  209 (420)
T ss_pred             HHHHHHHHHHhcccccccchhhh-ccch-h---------------------------cc-----cc--------------
Confidence            77766655554443332110000 0000 0                           00     00              


Q ss_pred             cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHH
Q 015136          266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGL  345 (412)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  345 (412)
                      +...++.++.++++..+...+..   +.....+.....+.|.+..+..       .+.+.+....+.......+..+++.
T Consensus       210 ~~~~~~~~~~l~~~~~~~l~l~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~  279 (420)
T PRK09528        210 AVSLKDALALLKLPKFWFLVLYV---IGVACFYDVFDQQFPNFFASFF-------ATPEQGTRVFGYLNSFQVFLEALIM  279 (420)
T ss_pred             cccHHHHHHHccCCCeEeehHHH---HHHHHHHHHHHHHHHHHHHHHH-------hccCcchHHHHHHHHHHHHHHHHHH
Confidence            00000222233333222222111   1111111112222332221110       1123455667888888888889999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          346 VLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       346 ~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ++.|++.||+|+|+.+..+..+.++..+++.+.++.+......++.+.......+....+..|.+|+
T Consensus       280 ~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  346 (420)
T PRK09528        280 FFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV  346 (420)
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999998888888888877766666666656666666655556666777776653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.91  E-value=1.1e-22  Score=188.39  Aligned_cols=317  Identities=16%  Similarity=0.114  Sum_probs=197.0

Q ss_pred             HHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---
Q 015136           32 LAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---  107 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---  107 (412)
                      ...++.......+.+..|.+ .+++|.|+.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++....   
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   88 (396)
T TIGR00882         9 LFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY   88 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556666666654 56789999999999999999999999999999999999999988776665544322   


Q ss_pred             hcch-----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136          108 AFSP-----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       108 ~~~~-----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      ...+     ....+++.+++.|++.+.. +....+..|..  ++++...+......++|.+++|.+++.+.+ .+||..|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f  165 (396)
T TIGR00882        89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVF  165 (396)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHH
Confidence            1111     2334566788888888876 66655555532  334556778888889999999999998765 5999999


Q ss_pred             HHHHHHHHHHHHHHHhc-cCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          182 ALSSIPSFAVLLLYSLA-PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      ++.+++.++..+..+.. +|+|+.       ++.++        +.                +++  . + +        
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~~----------------~~~--~-~-~--------  202 (396)
T TIGR00882       166 WLGSGFALILMLLLMFAKPKAPSS-------ATVAN--------AL----------------GAN--A-S-A--------  202 (396)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchh-------hhhhc--------cc----------------ccc--c-C-C--------
Confidence            99887777665444443 332210       00000        00                000  0 0 0        


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                            .+.++.+++++++..+.....   .+.....+.....+.+.|.++..       .+.+.+....+.......+.
T Consensus       203 ------~~~~~~~~~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~-------~~~~~~~~~~g~~~~~~~i~  266 (396)
T TIGR00882       203 ------FSLKLALELFRQRKFWMFVLY---VVGVACVYDVFDQQFANFFTSFF-------ATPQQGTRVFGYVTTMGELL  266 (396)
T ss_pred             ------CCHHHHHHHHcCCcHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-------cccccchHHHHHHHHHHHHH
Confidence                  000133444444433222222   22222222222223343332211       11234455667788888888


Q ss_pred             hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          341 ELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      ..++.+..|++.||+|||+.+.++..+.++...++...++.+......++.+.+..........+..|..
T Consensus       267 ~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       267 NALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8999999999999999999999988888887777666666665555555555544433333334444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.3e-22  Score=170.89  Aligned_cols=311  Identities=17%  Similarity=0.179  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI  103 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  103 (412)
                      +..+..+.+..+.---.....++.++.+.+++|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555555555555566678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHH
Q 015136          104 GLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWLL  181 (412)
Q Consensus       104 ~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~  181 (412)
                      .++-... +.+.++.+-.+.|.|.+.. ...+..+-+.+| |+-+..+|++....++|.++++.+...+.++. |||...
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL  168 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL  168 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence            9988877 7888899999999999998 778888888887 77899999999999999999999999998877 799999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhh
Q 015136          182 ALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIR  261 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (412)
                      .+-++++++.++.|+.-...++..  +.+                                                   
T Consensus       169 ~~WAl~allAl~~WlPq~~r~~~~--~~~---------------------------------------------------  195 (395)
T COG2807         169 GFWALLALLALLIWLPQALREQAA--SIA---------------------------------------------------  195 (395)
T ss_pred             HHHHHHHHHHHHHHhhhccccccc--ccc---------------------------------------------------
Confidence            999998888777654432111000  000                                                   


Q ss_pred             hhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcch
Q 015136          262 ITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGE  341 (412)
Q Consensus       262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (412)
                           .+..+-..+++++   ..+...+.+..++..+|....|+|.+..|           .|++..+++.+.+...+..
T Consensus       196 -----~~~~~~~~vw~~~---~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-----------~G~sa~~aG~llsl~~l~~  256 (395)
T COG2807         196 -----TKLVSVRKVWRSP---LAWQVTLFMGLQSLLYYIVIGWLPAILID-----------RGLSAAEAGSLLSLMQLAQ  256 (395)
T ss_pred             -----cccccccccccCc---hhHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------cCCCHHHhhhHHHHHHHHH
Confidence                 0000112234443   33455566667889999999999998855           4699999999999999999


Q ss_pred             hhHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCC
Q 015136          342 LPGLVLAGIIVDRA-GRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQ  409 (412)
Q Consensus       342 ~~g~~~~g~l~dr~-grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  409 (412)
                      ++.++....+.+|. .+|+.......++.++.+.+.+.+....... .++.|++.++.+|....++.+.
T Consensus       257 ~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~r  324 (395)
T COG2807         257 LPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLR  324 (395)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhh
Confidence            99999999999985 5788888888888888888877444333322 5788888899999887776554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.91  E-value=8.7e-22  Score=184.05  Aligned_cols=359  Identities=19%  Similarity=0.187  Sum_probs=219.7

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      +...++.....++.....+..++.+..++|- .....|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|.++
T Consensus        46 ~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv  124 (599)
T PF06609_consen   46 FAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIV  124 (599)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHH
Confidence            3334454555555666667778999999985 467889999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015136          107 SAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI  186 (412)
Q Consensus       107 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~  186 (412)
                      ++.++|...++++..+.|+|.|........++|..|.|.|+...++...........++.++..+..+.+|||.|++.++
T Consensus       125 ~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  125 CATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             hhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            99999999999999999999887655555689999999999888877766666666778888777777899999999988


Q ss_pred             HHHHHHHHHHhccCCchhhhhcCCh---HHHHHHHHHHH-------------HhhCCC-----CCCCccccccCCCCCcc
Q 015136          187 PSFAVLLLYSLAPESPRYLNVKGRT---TEARNILDKIA-------------LLNKAK-----LPNGMLVSDATSRPDEE  245 (412)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~~~~~-----~~~~~~~~~~~~~~~~~  245 (412)
                      ...+.++..+++...|++...++++   .+..+.++.+.             +.+-..     ....+......      
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv------  278 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV------  278 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH------
Confidence            7766644432222223322222211   11112222210             011000     00000000000      


Q ss_pred             cCCCCCCCcccchhhhhhh--hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 015136          246 LAPPDNTPLLTSSRIRITK--LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQ  323 (412)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (412)
                          ..--...---.+|..  .+.+..+.+. ++++  |.+....+..+.....+|....+.|......          +
T Consensus       279 ----iG~~~Lv~F~~wE~~~~~~~Pl~P~~L-f~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v----------f  341 (599)
T PF06609_consen  279 ----IGFVLLVAFVVWEWFGAPKDPLFPHRL-FKDR--RGFAALLVISFISGMNFFSVNILWPQQVVNV----------F  341 (599)
T ss_pred             ----HHHHHHHHHHHhhhhccCCCCcCCHHH-hccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------c
Confidence                000000000112211  1223334443 3332  2233333444445555666655555443211          1


Q ss_pred             CCCC---cchHHHHHHHHcchhhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhh
Q 015136          324 SMHD---SSLYLSVFLASLGELPGLVLAGIIVDRAGRKLS-LTIMLILVFICILPLAM--LQSNILITGLLVGARMFAFG  397 (412)
Q Consensus       324 ~~~~---~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~-l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~  397 (412)
                      +.++   ...++.....+.+..+|.++.|.+..+++|-|. ++++..++.+++-++..  .++....+.+.++.+++.+.
T Consensus       342 ~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~  421 (599)
T PF06609_consen  342 GSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGG  421 (599)
T ss_pred             cCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHH
Confidence            2222   345677778888888999999999999886444 45666665554444443  23333445666677777766


Q ss_pred             HhHHHHhhccCC
Q 015136          398 AFTIACIFTPEQ  409 (412)
Q Consensus       398 ~~~~~~~~~~e~  409 (412)
                      ......+.+.-.
T Consensus       422 ~~~~~~~~~ql~  433 (599)
T PF06609_consen  422 ILVPAIVIAQLI  433 (599)
T ss_pred             HHHHHHHeeEee
Confidence            655555444333

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.1e-21  Score=184.57  Aligned_cols=174  Identities=14%  Similarity=0.097  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHhhHHHhhh-hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILS-FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGI  103 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  103 (412)
                      .+..+++..+...+..+.+. ....++.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++++.++++++
T Consensus        15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g   94 (489)
T PRK10207         15 PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIG   94 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHH
Confidence            34444455555656655554 44556678899999999999999999999999999999999 99999999999999999


Q ss_pred             HHHhhcchhHHH-HHHHHHHHhhhcCcc-ccceeeeeeccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          104 GLLSAFSPNYIS-LVTLRGLVGIGIGSG-PVFSAWFLEFVPAA--KRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       104 ~~~~~~~~~~~~-~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      .++++++.+... ++++|+++|+|.|.. +...+++.|.+|++  +|+++.+++..+.++|.++||.+++++.++.|||+
T Consensus        95 ~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~  174 (489)
T PRK10207         95 YFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV  174 (489)
T ss_pred             HHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence            999988876454 557899999999998 88889999999877  45889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 015136          180 LLALSSIPSFAVLLLYSLAP  199 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (412)
                      .|++.++..++.++.+.+.+
T Consensus       175 ~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        175 TYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHcc
Confidence            99987654443344444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.91  E-value=1.4e-21  Score=183.82  Aligned_cols=171  Identities=14%  Similarity=0.030  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhh-hh--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHH
Q 015136           28 AYAGLAVFAEAMEIMILSFIGPAVK-SE--WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGI  103 (412)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~  103 (412)
                      ..+.+..+...+..+...+.+|.+. ++  +|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            3344556666666666666666664 44  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          104 GLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK---RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       104 ~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      .++.+++++.+.+.++|++.|+|.|.. +...++++|++|+++   |+++.++.+.+.++|.++||.+++.+.++.|||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~  172 (475)
T TIGR00924        93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHV  172 (475)
T ss_pred             HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            999999888889999999999999988 888899999998754   8889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 015136          180 LLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~  198 (412)
                      .|.+.++..++..+..++.
T Consensus       173 ~f~~~~~~~~~~~l~~~~~  191 (475)
T TIGR00924       173 GFNLAAVGMVIGLLTFFAG  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999876555544444343

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.91  E-value=9e-23  Score=174.76  Aligned_cols=304  Identities=19%  Similarity=0.114  Sum_probs=189.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCccccceeee
Q 015136           58 SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWF  137 (412)
Q Consensus        58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i  137 (412)
                      +..-.|.+.+.|.++..+.++.+|.++||+|||++++++++..++...+.+.+.|+..+.++|++.|+.-|-..+..+++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii  145 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII  145 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence            44567999999999999999999999999999999999999999999999999999777777999999999888899999


Q ss_pred             eecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHH----HHHHHH-HHHHHHhccCCchhhhhcC
Q 015136          138 LEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI---TLNWRWLLALS----SIPSFA-VLLLYSLAPESPRYLNVKG  209 (412)
Q Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~w~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~  209 (412)
                      +|.+++|+|+++++....+.++|.++||.+++++..   ..| ++.|...    .+.... .....+++||+-+...+++
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~  224 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRND  224 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcc
Confidence            999999999999999999999999999999999987   222 2222221    122222 2345677888743221110


Q ss_pred             ChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHH---HHHH
Q 015136          210 RTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVR---TTLL  286 (412)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~  286 (412)
                      ...+..+..+..                      .+....+          +.+       ....+.+.+...   ....
T Consensus       225 ~~~~~~~~~~~~----------------------~~~~~~~----------~~~-------~v~~lrn~p~~~~i~~~~i  265 (451)
T KOG2615|consen  225 EHSTLQEAADDR----------------------LALLKFA----------RIF-------KVAALRNPPLLDFISVLRI  265 (451)
T ss_pred             cccchhhhhhhh----------------------hhhcchh----------hhh-------hhhhhcCccccchHHHHHH
Confidence            001011000000                      0000000          000       000000011000   0011


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhc--hhhHHHHH
Q 015136          287 LWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAG--RKLSLTIM  364 (412)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g--rr~~l~~~  364 (412)
                      ...-.+.....+-+.....+.          +.++..|+++.+.|.+++..++...+.+..-....||..  -+..+..+
T Consensus       266 ~~l~~~ly~~l~s~~~~t~~~----------l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~  335 (451)
T KOG2615|consen  266 FGLHYFLYLELFSGLENTVLF----------LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFS  335 (451)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH----------hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHH
Confidence            111111111111111111221          123557899999999988887777777776667777765  55566666


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          365 LILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       365 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ..++.-..+.+........+.....+..+......+-...++....|
T Consensus       336 l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~  382 (451)
T KOG2615|consen  336 LLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGP  382 (451)
T ss_pred             HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence            66666666666666665555555555555544444444444444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.90  E-value=8e-22  Score=185.25  Aligned_cols=299  Identities=14%  Similarity=0.057  Sum_probs=202.7

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hcchh-HHHHHHHHHHHHHHHhhcchh------HH
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN----YGRKK-GFLGIAMITSGIGLLSAFSPN------YI  114 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~  114 (412)
                      ...+.+.+++|+++.++|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      ..
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV  100 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence            45567778899999999999999999999999999999997    68755 566788888888777766543      45


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeecc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFV-PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-------TLNWRWLLALSS  185 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~w~~~~~~~~  185 (412)
                      .+++.+++.+++.+.. ....++..|.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+||+.+.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~  180 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence            5667788888888876 56667888887 56899999999999989988887776665542       458999999888


Q ss_pred             HHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          186 IPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      ++.++..+. .+..+|+++.    .+.++                                 +  + +.           
T Consensus       181 ~l~~~~~~~~~~~~~e~~~~----~~~~~---------------------------------~--~-~~-----------  209 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYSE----IPKNI---------------------------------E--K-KL-----------  209 (437)
T ss_pred             HHHHHHHHHHHcCCEecCCC----CCccc---------------------------------c--c-CC-----------
Confidence            777666443 4455554310    00000                                 0  0 00           


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                        +..+.++.+++++..+....   ..+......+....+.+.+.+..          .+ ++...+.......++.+++
T Consensus       210 --~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~i~~ii~  273 (437)
T TIGR00792       210 --SLKQIFKALFKNDQLLILCL---AYLFYNLAFNIKNGVQVYYFTYV----------LG-DPELFSYMGSIAIVAGLIG  273 (437)
T ss_pred             --CHHHHHHHHhCCHHHHHHHH---HHHHHHHHHHHHcchhheeEeee----------cC-ChHHHHHHHHHHHHHHHHH
Confidence              00013344444443333322   22222233333333333333211          22 3445566667778889999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ-SNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .++.++++||+|+|+.+..+..+.+++.+.+.+.. +.+...+..++.+++.+...+..+++.+|..|
T Consensus       274 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  341 (437)
T TIGR00792       274 VLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD  341 (437)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999888888777666543 33445555667777778888888888887754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.90  E-value=9.9e-22  Score=182.38  Aligned_cols=316  Identities=11%  Similarity=0.024  Sum_probs=196.9

Q ss_pred             HHHHHHhhHHHhh-hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHhhc
Q 015136           32 LAVFAEAMEIMIL-SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR-KKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        32 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~  109 (412)
                      +..+..+...... ++..+.+.+++|++.+++|++.+++.++..+++++.|.++||+|| |+++.++.++.+++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555 556677778899999999999999999999999999999999965 77888888888888888888


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceee----ee----ecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAW----FL----EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL  180 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~----i~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~  180 (412)
                      .++++.+++.|++.|++.+.. +...+.    ..    |......|.+..|      .+|.+++|.+++.+.....|+ .
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~  161 (418)
T TIGR00889        89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-Q  161 (418)
T ss_pred             hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-H
Confidence            899999999999999987765 544332    11    2222233444444      368888888888774333455 3


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      |++.++..++..+..+++||+|+...  +++.+.++..                                          
T Consensus       162 f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~------------------------------------------  197 (418)
T TIGR00889       162 LYITAGSSALLGVFALTLPDIPVAKS--TAKMSIKVML------------------------------------------  197 (418)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCcc--ccccCHHHHh------------------------------------------
Confidence            55555555555445566777653110  0000000000                                          


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                             + .+.+++++.+.........+.   ..........+.+.+.++.+..+   ....+......+.......+.
T Consensus       198 -------~-~~~~~~~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~i~  263 (418)
T TIGR00889       198 -------G-LDAFILFKNKRMAIFFFFSML---LGAPLQITNIFGNGFLHEFGRNP---EFADSFVVKNASIWMSLSQFS  263 (418)
T ss_pred             -------h-hhHHHHhcCCCeeeHHHHHHH---HHhHHHHHHHhHHHHHHHhcccc---cccchhhhhhHHHHHHHHHHH
Confidence                   0 011222332222222222211   11112222233343332221000   000123346678888888999


Q ss_pred             hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          341 ELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS----NILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+++.+..|++.||+|+|+++..+.++..++...+.....    .+...+..++.+++.+...+....++.|.+|+
T Consensus       264 ~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~  339 (418)
T TIGR00889       264 EIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV  339 (418)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            9999999999999999999999999988888766665321    23344456666766667777778888888773

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.89  E-value=3.8e-21  Score=180.47  Aligned_cols=320  Identities=17%  Similarity=0.109  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      +-.++++.+...++..+.....+.+..+..-|+..++++.++..+...+.++++|.++||++||++++.+.++.++..+.
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            33445666777777777788888888888889999999999999999999999999999999999999998887766544


Q ss_pred             hhc-----chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 015136          107 SAF-----SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL  180 (412)
Q Consensus       107 ~~~-----~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~  180 (412)
                      .++     ..+.+.+++.-++.|++.+.. |.-.+++.|..|+++...+.++.+...++..++||.++|.+....|-.+.
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            332     247888999999999999998 99999999999999999999999999999999999999999998898899


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          181 LALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      |.+.++..++.+......+++++   +++..  .++..+.+.                                      
T Consensus       172 f~inalsfl~~i~~l~~~~~~~~---~~~~~--~e~~~~~l~--------------------------------------  208 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPPPP---PSSLP--RERFFSALR--------------------------------------  208 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccccc---ccccc--hhhhhhhHH--------------------------------------
Confidence            99888766655444444433221   00000  000000000                                      


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                               ..++-+.+.+..+..+.....+......   ....+|.+.++          ..|.++...|++....+++
T Consensus       209 ---------~G~ryv~~~~~l~~~l~~~~~~~l~~~a---~~aLlPl~a~~----------~l~~~a~~yGll~a~~gvG  266 (524)
T PF05977_consen  209 ---------EGLRYVRSSPPLRSVLLRSFLFNLFASA---VWALLPLFARD----------VLGGGASGYGLLLAAFGVG  266 (524)
T ss_pred             ---------HHHHHHhcchHHHHHHHHHHHHHHhhhH---HHHhhhHHHHH----------HhCCcHHHHHHHHHHHHHH
Confidence                     0222233334334333332222222222   22334544432          2467888999999999999


Q ss_pred             hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          341 ELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .++|.++.+++.+|+++++++..+.++.+++.+.+.+.++.+...+.+++.|++.........+...+..|
T Consensus       267 ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P  337 (524)
T PF05977_consen  267 AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVP  337 (524)
T ss_pred             HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998888888888887788888888877777766666666555

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-22  Score=175.08  Aligned_cols=274  Identities=18%  Similarity=0.076  Sum_probs=199.3

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-c
Q 015136           53 SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-P  131 (412)
Q Consensus        53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~  131 (412)
                      ++.+-.++++|++.+...+...+.+++.|.+.||+|+|..+++|.+.+..++++.++..++++++++|.++|+|.+.. .
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            344567789999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             cceeeeeecccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCC
Q 015136          132 VFSAWFLEFVPAAK-RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGR  210 (412)
Q Consensus       132 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (412)
                      ...+++++.+|+++ |++++|+...+.++|.++||+.++.+.+..|.+..|++.+++.++...+.+++-|..+     .+
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~  253 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD  253 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC
Confidence            88899999999765 7999999999999999999999999999999999999999998888666555443211     00


Q ss_pred             hHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHH
Q 015136          211 TTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWML  290 (412)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  290 (412)
                      .++                                 .+                   .-.++.++++.++.....   . 
T Consensus       254 ~~~---------------------------------~~-------------------~~~~~~~Ll~dP~I~~~a---g-  277 (464)
T KOG3764|consen  254 PDS---------------------------------TE-------------------QGTPMWSLLMDPYILLIA---G-  277 (464)
T ss_pred             ccc---------------------------------cc-------------------cCccHHHHHhCchHhhhh---c-
Confidence            000                                 00                   000333444443322111   1 


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhc--hhhHHHHHHHHH
Q 015136          291 FFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAG--RKLSLTIMLILV  368 (412)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g--rr~~l~~~~~~~  368 (412)
                        ...++..+..+..|.+.       ..+.++...+.-+.++.+....+...++..+.|.+.||++  |......+.+..
T Consensus       278 --ai~~~n~~lafLePtls-------lwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~  348 (464)
T KOG3764|consen  278 --AITFSNSSLAFLEPTLS-------LWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATV  348 (464)
T ss_pred             --chhhccchHHHhCcccH-------HHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHH
Confidence              11112222223333222       1112233433347888999999999999999999999999  655556666666


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 015136          369 FICILPLAMLQSNILITGLLVGARMFAF  396 (412)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  396 (412)
                      .++.....+.++...+++.....+++.+
T Consensus       349 G~~~~~iP~~~~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  349 GVSSGPIPFATSIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence            6666666665555544444444444333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=3e-20  Score=175.90  Aligned_cols=162  Identities=17%  Similarity=0.038  Sum_probs=131.3

Q ss_pred             HHHHHHHHhhHHHhhhhhh-hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHh
Q 015136           30 AGLAVFAEAMEIMILSFIG-PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      +++..+...+..+.+.... .++.+++|++.++.+++.+.+........+++|+++|| +|||+.++.+.++.+++..++
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            3344445555544454444 45568999999999998888877767777899999999 599999999999999998888


Q ss_pred             hcch-hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          108 AFSP-NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK--RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       108 ~~~~-~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      ++++ +.+.+.++|++.|++.|.. +...+++.|++|+++  |..+.++++.+.++|..++|.+++++.++.|||+.|.+
T Consensus       106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i  185 (500)
T PRK09584        106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL  185 (500)
T ss_pred             HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            8764 4566778899999999987 777789999998643  45688899999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 015136          184 SSIPSFAV  191 (412)
Q Consensus       184 ~~~~~~~~  191 (412)
                      .++..++.
T Consensus       186 ~~i~~~i~  193 (500)
T PRK09584        186 SVVGMLIT  193 (500)
T ss_pred             HHHHHHHH
Confidence            87654443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.87  E-value=8.1e-20  Score=168.85  Aligned_cols=274  Identities=14%  Similarity=-0.017  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHH--HHHHHHHHHHHHHHHH-HHHhhhcchhHHHHHHHHH-HH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLL--STVVFAGNLVGVYLWG-LLSDNYGRKKGFLGIAMIT-SG  102 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~-~i  102 (412)
                      ...+...++.++...+...+..|.+.++.|.|.+++|++  .++..+...+.+|+.+ +..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            445566678888888999999999999999999999997  4677888888888884 4799999999876555332 21


Q ss_pred             HHHHhh---cchh-HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          103 IGLLSA---FSPN-YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       103 ~~~~~~---~~~~-~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      .....+   ...+ ...++...++.++..+.. +....+..|..++++++...+....+..+|..+++...+.+.++.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222   2222 223334444455555555 66667778888888888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccc
Q 015136          178 RWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTS  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (412)
                      |..|++.++..++..+..++.+|+++.   +++.++.                                           
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~~-------------------------------------------  196 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPLA-------------------------------------------  196 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccchh-------------------------------------------
Confidence            999999988777665554555443210   0000000                                           


Q ss_pred             hhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHH
Q 015136          258 SRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLA  337 (412)
Q Consensus       258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (412)
                                ...+.+++++++..+......+...   ........+.+.|.+|           .|+++.+.+......
T Consensus       197 ----------~~~~~~~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~l~~-----------~G~s~~~ig~~~~~~  252 (390)
T TIGR02718       197 ----------RRASLFRFFRRPLAWSLLALALLSA---MTAVSGFGLSKLYLVD-----------AGWPLEWIGRLGMAG  252 (390)
T ss_pred             ----------hHHHHHHHHcCcCHHHHHHHHHHHH---HHHHHHHHHhhHHHHh-----------cCCCHHHHHHHHhHH
Confidence                      0002333444443333333333332   2223333344444433           468888989888776


Q ss_pred             Hc-chhhHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 015136          338 SL-GELPGLVLAGIIVDRAGRKLSLTIMLILVFI  370 (412)
Q Consensus       338 ~~-~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~  370 (412)
                      ++ ..+++.+++|++.||+|+|+.+..+..+.++
T Consensus       253 ~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       253 GAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            64 5677889999999999999998887766533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.85  E-value=1.6e-18  Score=160.18  Aligned_cols=335  Identities=13%  Similarity=0.100  Sum_probs=209.7

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhcchhHHHHH-HHHHHHHHHH
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD----NYGRKKGFLGI-AMITSGIGLL  106 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~i~~~~  106 (412)
                      ...+...+.........+.+.+++|.++.+.+++..+..+...+.+|+.|.++|    |+||||.++++ ....+++..+
T Consensus        11 ~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l   90 (477)
T TIGR01301        11 SVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL   90 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            334444555666667777788999999999999999999999999999999999    59999998875 6666666667


Q ss_pred             hhcchhHH-----------------HHHHHHHHHhhhcCcc-ccceeeeeecccccch--hhHHHHHHHHHHHHHHHHHH
Q 015136          107 SAFSPNYI-----------------SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKR--GMWMVIFSTFWTLGSIFEAA  166 (412)
Q Consensus       107 ~~~~~~~~-----------------~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~  166 (412)
                      .+++++.+                 .+.++-.+..++.... +...++++|..|+++|  +.+.++.+...++|.++|+.
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        91 IGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             HHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76765542                 2233333444566666 6677899999998865  68999999999999999999


Q ss_pred             HHHHH--HhcC-------------ChHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCC
Q 015136          167 LAWIV--MITL-------------NWRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLP  230 (412)
Q Consensus       167 ~~~~l--~~~~-------------~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (412)
                      ++++.  .+.+             +.|..|++.++..++. .+..+..+|.|.... ++..++                 
T Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~-----------------  232 (477)
T TIGR01301       171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINS-----------------  232 (477)
T ss_pred             HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhh-----------------
Confidence            99875  2211             5688999888766665 445666788653110 000000                 


Q ss_pred             CCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 015136          231 NGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSS  310 (412)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (412)
                                |.++..+. +.          +...++   -++.+++-+  +.....+...++.-+.++.+.++.+.+..
T Consensus       233 ----------~~~~~~~~-~~----------~~~~~~---i~~~~~~mP--~~m~~l~~vqffsW~a~f~~~~y~T~~vg  286 (477)
T TIGR01301       233 ----------EAAPPSKH-GE----------EAFFGE---LFGAFKYLP--RPVWILLLVTCLNWIAWFPFILFDTDWMG  286 (477)
T ss_pred             ----------hccccccc-ch----------hhhHHH---HHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence                      00000000 00          000000   122222211  23333444444444455555555554443


Q ss_pred             cccccccccccccCCCCc--chHHHHHHHHcchhhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHhhhh-------
Q 015136          311 TQSKCGTTLTVSQSMHDS--SLYLSVFLASLGELPGLVLAGIIVDRAGR-KLSLTIMLILVFICILPLAMLQS-------  380 (412)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~g~l~dr~gr-r~~l~~~~~~~~~~~~~l~~~~~-------  380 (412)
                      +.-..+.. ..+..+++.  ...+......+...+.+++..++.+|+|+ |+...++.++.++++....+..+       
T Consensus       287 ~~v~~~~~-~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~  365 (477)
T TIGR01301       287 REVYGGSV-NQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRY  365 (477)
T ss_pred             HHHcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            21100000 000011000  12334455566666777888899999984 67778888888888887775332       


Q ss_pred             --------------hHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          381 --------------NILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       381 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                                    .+..++...+.|+.....+.+.++++++..|
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       366 YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence                          2556677788899999999999999888765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.84  E-value=3.3e-18  Score=158.72  Aligned_cols=168  Identities=14%  Similarity=0.066  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMITSGIG  104 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~  104 (412)
                      +..++...+...+..+.+...+|.+ .+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~   90 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGH   90 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            3344444555555656566556655 567899999999999999999999999999999999 99999999999999998


Q ss_pred             HHhhcch-hHHHHHHHHHHHhhhcCcc-ccceeeeeeccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 015136          105 LLSAFSP-NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAA--KRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL  180 (412)
Q Consensus       105 ~~~~~~~-~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~  180 (412)
                      ++.+..+ +...+.+...+.++|.|.. +...++++|.+|++  +|..+.++.....++|..++|.+.+++.++.|||+.
T Consensus        91 lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~  170 (493)
T PRK15462         91 VVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMG  170 (493)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHH
Confidence            7666543 2233444455556667776 76778899999875  799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 015136          181 LALSSIPSFAVLLL  194 (412)
Q Consensus       181 ~~~~~~~~~~~~~~  194 (412)
                      |.+.++..++.++.
T Consensus       171 F~iaaigm~l~li~  184 (493)
T PRK15462        171 FGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99877644444433

>PRK09669 putative symporter YagG; Provisional

Probab=99.82  E-value=6.4e-18  Score=158.75  Aligned_cols=296  Identities=13%  Similarity=0.098  Sum_probs=185.5

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hcchh-HHHHHHHHHHHHHHHhhcchh------HH
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN----YGRKK-GFLGIAMITSGIGLLSAFSPN------YI  114 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~~  114 (412)
                      .....+.+++|+|+.++|.+.++..+..++..|+.|.++||    +|||| .++.+.+..+++.++....++      ..
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            45567778899999999999999999999999999999998    78755 455677777777665544432      44


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeecc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFV-PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-------TLNWRWLLALSS  185 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~w~~~~~~~~  185 (412)
                      .+++..++.+.+.... ..-.++.+|+. ++++|.+..++......+|..+++.+...+..       ..+|+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            5555666666666555 45557888887 56789998888888888888877765544432       246888887777


Q ss_pred             HHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          186 IPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      ++.++..+. .+..+|.++..  +++..                                                    
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~--~~~~~----------------------------------------------------  216 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPE--VDNSS----------------------------------------------------  216 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCC--CcCCC----------------------------------------------------
Confidence            666555333 33334321100  00000                                                    


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                        +..++++.+++++.++......+..........+.   ...|.+..          .+ ++...+.......+..+++
T Consensus       217 --~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~---~~y~~~~~----------~~-~~~~~~~~~~~~~i~~ii~  280 (444)
T PRK09669        217 --SVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGA---TLYYVNYV----------LL-RPDLATLFLVTGMIAGLFG  280 (444)
T ss_pred             --CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhh---hheeeeee----------cC-CHHHHHHHHHHHHHHHHHH
Confidence              00014445555554444433333222111111111   12222111          11 1223334444556777888


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAM--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .++.+++.||+|+|+.+..+.++.+++.+.+.+  ..+.+...+..++.+++.+...+..+++.+|+.+
T Consensus       281 ~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d  349 (444)
T PRK09669        281 ALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVD  349 (444)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            899999999999999998887766554443333  2344445666677888888888999999988764

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.81  E-value=9e-19  Score=163.69  Aligned_cols=297  Identities=21%  Similarity=0.197  Sum_probs=209.3

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhcchhHHH-HHHHHHHHHHHHhhcc-h-------h
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD----NYGRKKGFL-GIAMITSGIGLLSAFS-P-------N  112 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~i~~~~~~~~-~-------~  112 (412)
                      ...+.+.+..|+++...|.+..+..+..++..|+.|.++|    |+||||..+ +|....+++.+++... +       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4556777888999999999999999999999999999999    899877554 6888888888777655 3       2


Q ss_pred             HHHHHHHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHH
Q 015136          113 YISLVTLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-------NWRWLLAL  183 (412)
Q Consensus       113 ~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~w~~~~~~  183 (412)
                      ...+.+..++..++.... ....++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..       +|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            233466666778888877 666789999997 578999999998888888876666666655322       58888888


Q ss_pred             HHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          184 SSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      .+++.++..+ ..+..+|+++.    .++++                                                 
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~----~~~~~-------------------------------------------------  209 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVE----VTEQE-------------------------------------------------  209 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccc----ccccc-------------------------------------------------
Confidence            8877776644 44555661110    00000                                                 


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcch
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYY-GIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGE  341 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (412)
                       +..+-.+.++.+++++..+......+.......... ...++.....              |.+ ...+.......++.
T Consensus       210 -~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--------------~~~-~~~~~~~~~~~~~~  273 (428)
T PF13347_consen  210 -KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--------------GNE-GLISIFMLIFFVAS  273 (428)
T ss_pred             -cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--------------cCc-hhhHHHHHHHHHHH
Confidence             000011145556665554444444333322211111 1122222211              222 45566677788889


Q ss_pred             hhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          342 LPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--SNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       342 ~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +++.++.++++||+|+|+.+..+..+.+++.+.+.+..  +.+...+..++.+++.+..+...+++.+|+.+
T Consensus       274 ~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id  345 (428)
T PF13347_consen  274 IVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVID  345 (428)
T ss_pred             HHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchh
Confidence            99999999999999999999999999999998888765  77788888889999999999999999998764

>TIGR00788 fbt folate/biopterin transporter

Probab=99.80  E-value=1.7e-18  Score=162.58  Aligned_cols=335  Identities=13%  Similarity=0.063  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----chhHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG-----RKKGFLGIAMI   99 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~   99 (412)
                      ..+.++...++..+..........+.+.+++|+|+++++...++..+...+-.+ +|+++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            444555556777777744444566777778999999999999999999999555 999999998     77777888777


Q ss_pred             HH-HHHHHhhcchhHHHHH-HHHHHHhhhcCcc-ccceeeeeecccccchhhH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          100 TS-GIGLLSAFSPNYISLV-TLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMW---MVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       100 ~~-i~~~~~~~~~~~~~~~-~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      .. ++....+..++..... +..++.+++.+.. .+.-++..|..+ +++...   .+......++|.++++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            63 4444444445544444 4788999998888 888899999988 555443   333344455899999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCC
Q 015136          174 TLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTP  253 (412)
Q Consensus       174 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (412)
                      .++||..|++.+...++..+...+++|++.....+.++++.... ...                                
T Consensus       184 ~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~--------------------------------  230 (468)
T TIGR00788       184 KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-ALL--------------------------------  230 (468)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-hhh--------------------------------
Confidence            99999999998877776655567777753110000000000000 000                                


Q ss_pred             cccchhhhhhhhcccccchhhccchhhHHHHHHHHHH-HHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHH
Q 015136          254 LLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWML-FFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYL  332 (412)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (412)
                          .....+..++...+....++++..+..++..+. +.      .......+.+.        ......|.++...|.
T Consensus       231 ----~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~------~~~~~~~~~f~--------~~~~~lG~s~~~~G~  292 (468)
T TIGR00788       231 ----TLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYA------NLPGASGSVFC--------ATTQCLPGGPSFSGM  292 (468)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh------hcCCCCceeEE--------EEcccCCCCcchhhh
Confidence                000000000001122222333222222211111 11      00000001000        111246899999999


Q ss_pred             HHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHhhHhHHH
Q 015136          333 SVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML----------QSNILITGLLVGARMFAFGAFTIA  402 (412)
Q Consensus       333 ~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  402 (412)
                      .....+++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+......++.+++.+..+...
T Consensus       293 ~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~  372 (468)
T TIGR00788       293 SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF  372 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH
Confidence            9999999999999999999999999999999998888877554310          222233344455555555556666


Q ss_pred             HhhccCCCCC
Q 015136          403 CIFTPEQLGW  412 (412)
Q Consensus       403 ~~~~~e~~P~  412 (412)
                      ..++.+..|+
T Consensus       373 ~~~~~~~~p~  382 (468)
T TIGR00788       373 LVLLARLCPS  382 (468)
T ss_pred             HHHHHHhCCC
Confidence            7777766663

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.80  E-value=1.4e-17  Score=157.46  Aligned_cols=309  Identities=12%  Similarity=0.018  Sum_probs=186.4

Q ss_pred             hhHHHhhhh-hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhcc-hhHHHHHHHHHHHHHHHhhcch
Q 015136           38 AMEIMILSF-IGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD----NYGR-KKGFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        38 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~  111 (412)
                      .......+. ....+.+.+|+++..+|.+..+.-+..++..|+.|.++|    |+|| |+.++++....+++.+++...+
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p   98 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH   98 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC
Confidence            333344444 445556677999999999999999999999999999999    6699 5556668777777766554432


Q ss_pred             h------HHHHHHHHHHHhhhcCcc-ccceeeeeecc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC
Q 015136          112 N------YISLVTLRGLVGIGIGSG-PVFSAWFLEFV-PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT-------LN  176 (412)
Q Consensus       112 ~------~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~  176 (412)
                      +      +..+++..++.+++.... ....++..|.. ++++|.+..++-..+.++|..+.+.+...+.+.       .+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g  178 (473)
T PRK10429         99 LFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFG  178 (473)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence            1      334455566667777776 56667888988 588999999987777777766665554443221       24


Q ss_pred             hHHHHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcc
Q 015136          177 WRWLLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLL  255 (412)
Q Consensus       177 w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (412)
                      |+....+.+++.++.. +..+..+|.+.....+.++                                      +++  .
T Consensus       179 ~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------------------------------------~~~--~  218 (473)
T PRK10429        179 FQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE--------------------------------------GSH--L  218 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc--------------------------------------ccC--C
Confidence            6666666655544433 3333345432100000000                                      000  0


Q ss_pred             cchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHH
Q 015136          256 TSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVF  335 (412)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (412)
                      +           -...++.+++++.++.....   .+......+....+.+.+.+..           ..+....+....
T Consensus       219 ~-----------~~~~~~~~~~n~~~~~ll~~---~~~~~~~~~~~~~~~~y~~~y~-----------~~~~~~~~~~~~  273 (473)
T PRK10429        219 T-----------LKDIVALIYKNDQLSCLLGM---ALAYNIASNIINGFAIYYFTYV-----------IGDADLFPYYLS  273 (473)
T ss_pred             C-----------HHHHHHHHhcCHHHHHHHHH---HHHHHHHHHHHhhheeeEEEEE-----------CCCHHHHHHHHH
Confidence            0           00023333344333332222   2222233333333334333221           123344555666


Q ss_pred             HHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          336 LASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAM-----LQSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       336 ~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      ...++.+++.++.+++.||+|+|+.+.++..+..++.+.+..     ..+.+...+..++.+++.+..++..+++.+|+.
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            666888999999999999999999998888766655544432     223344455566677778888888888888875


Q ss_pred             C
Q 015136          411 G  411 (412)
Q Consensus       411 P  411 (412)
                      +
T Consensus       354 d  354 (473)
T PRK10429        354 D  354 (473)
T ss_pred             h
Confidence            4

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=1.2e-17  Score=158.71  Aligned_cols=184  Identities=15%  Similarity=0.029  Sum_probs=138.9

Q ss_pred             hHHHhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH---hhcchhHH
Q 015136           39 MEIMILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL---SAFSPNYI  114 (412)
Q Consensus        39 ~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~  114 (412)
                      ...+......|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++..++.+.   ...+++..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIG  343 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            34444455566655 668998888888888899999999999999999999999988887654433322   22345677


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWLLALSSIPSFAVL  192 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~  192 (412)
                      .+++++++.|++.+.. .....++.|.+|++.|++++++......++..++|.+.+++.+.. +|+..+++..++.++.+
T Consensus       344 ~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~  423 (490)
T PRK10642        344 LIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL  423 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            7788899888876655 555667779999999999999855555666778899998888754 47877776666666666


Q ss_pred             HHHHhccCCchhhhhc-----CChHHHHHHHHHHH
Q 015136          193 LLYSLAPESPRYLNVK-----GRTTEARNILDKIA  222 (412)
Q Consensus       193 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  222 (412)
                      +..+++||+|+++.++     ++.+|+++.+.+++
T Consensus       424 ~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        424 ITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            6677789999987654     77788888877765

>PRK11462 putative transporter; Provisional

Probab=99.76  E-value=9.4e-16  Score=144.04  Aligned_cols=293  Identities=13%  Similarity=0.064  Sum_probs=179.3

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHH-HHHHHHHHHHHHhhcchh------HH
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN----YGRKKGFL-GIAMITSGIGLLSAFSPN------YI  114 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~-~~~~~~~i~~~~~~~~~~------~~  114 (412)
                      .....+.+..|+++..+|.+..+.-+.-++.-|+.|.++||    +||||..+ ++.+..+++.+++...++      ..
T Consensus        31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            34455667789999999999999999999999999999995    79876555 566777777766654432      33


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-------NWRWLLALSS  185 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~w~~~~~~~~  185 (412)
                      .+.+..++..++.... ..-.++..|..+ +++|.+..++...+..+|..+++.+...+.+..       +|+....+.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            4555566667777776 555578888876 789999999999999999888877766554432       5777766666


Q ss_pred             HHHHHHHHH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhh
Q 015136          186 IPSFAVLLL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITK  264 (412)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
                      ++.++.... ....+|.++..  +++ ...                                                  
T Consensus       191 ii~~i~~~i~~~~~kE~~~~~--~~~-~~~--------------------------------------------------  217 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEAP--PTT-TSM--------------------------------------------------  217 (460)
T ss_pred             HHHHHHHHHHHhcceeccCCC--ccC-CCH--------------------------------------------------
Confidence            655554333 33334432100  000 000                                                  


Q ss_pred             hcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhH
Q 015136          265 LKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPG  344 (412)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  344 (412)
                          .+.++..++++.++......+..........+...+...|.             .+. +...+.......+.++++
T Consensus       218 ----~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-------------~g~-~~~~~~~l~~~~i~~iig  279 (460)
T PRK11462        218 ----REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-------------LGT-PEVFVAFLTTYCVGNLIG  279 (460)
T ss_pred             ----HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-------------cCC-hHHHHHHHHHHHHHHHHH
Confidence                00333444444444443333333332233333333333332             122 223345566777888899


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhHhHHHHhhccCC
Q 015136          345 LVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS--NILITGLLVGARMFAFGAFTIACIFTPEQ  409 (412)
Q Consensus       345 ~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  409 (412)
                      .++++++.||+++|+....+..+..+..+++.+.+.  .....+..++.+++.+...+..+++.+|.
T Consensus       280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~  346 (460)
T PRK11462        280 SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDT  346 (460)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998876555444443333333222  22333344555666555566666666664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=6.4e-16  Score=141.21  Aligned_cols=311  Identities=17%  Similarity=0.130  Sum_probs=202.6

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHhhcchh
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG-RKKGFLGIAMITSGIGLLSAFSPN  112 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~  112 (412)
                      ++...+....+.+..+.+.++.|.|.+|+|.+.+...+...++++++|.++||.+ +|+.+.+..++.++........++
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~   90 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS   90 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4455555666778889999999999999999999999999999999999999986 577777777777777777777888


Q ss_pred             HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---hHHHHHHHHHH
Q 015136          113 YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAAL-AWIVMITLN---WRWLLALSSIP  187 (412)
Q Consensus       113 ~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~---w~~~~~~~~~~  187 (412)
                      ++.+++..++..+..... |...++..+...  +++.-.|-.....++|..++... +..+....+   ....+++.+..
T Consensus        91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  168 (400)
T PF03825_consen   91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL  168 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence            888888777777776665 666565555543  33344455555666666665443 222322222   23445555555


Q ss_pred             HHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcc
Q 015136          188 SFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKS  267 (412)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (412)
                      .++.....+.+|+.|.....+++.+   +                                                  .
T Consensus       169 ~~ll~~~~l~lp~~~~~~~~~~~~~---~--------------------------------------------------~  195 (400)
T PF03825_consen  169 SLLLAGFALFLPKTPPKRSAKESVK---K--------------------------------------------------L  195 (400)
T ss_pred             HHHHHHHHHhCCCCccccccCCCcc---c--------------------------------------------------c
Confidence            5444444556777652100000000   0                                                  0


Q ss_pred             cccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHH
Q 015136          268 GFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVL  347 (412)
Q Consensus       268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  347 (412)
                      ...+..++++++....+++...........+|   .+.+.|.++.+          |.+....+.......+..++.-..
T Consensus       196 ~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~---~f~~~yl~~~g----------g~~~~~~g~~~~l~~~aEi~~f~~  262 (400)
T PF03825_consen  196 LGLDALKLLKNPRFLVFLLAAFLIGISHAAYY---TFFSIYLQELG----------GYSGSTIGILWALGVVAEIPFFFF  262 (400)
T ss_pred             cchHHHHHhcCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcc----------cchhhHHHHHHHHHHHHHHHHHHH
Confidence            00022334444444433333333332222233   33444443332          255666777777888899999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHH----HHHHHHhhHhHHHHhhccCCCCC
Q 015136          348 AGIIVDRAGRKLSLTIMLILVFICILPLAML-QSNILITGLLV----GARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       348 ~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .+++..|+|.++++.++.+..++=..++... ++.+.......    +-|...+..+.....|+.|..|+
T Consensus       263 ~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~  332 (400)
T PF03825_consen  263 SGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP  332 (400)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999988876 44444333333    46777788888888888888874

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=1.5e-16  Score=140.25  Aligned_cols=327  Identities=16%  Similarity=0.123  Sum_probs=228.2

Q ss_pred             CCCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 015136           18 GFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIA   97 (412)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~   97 (412)
                      +..++||.+++..++..+.+++.+..+++.......-|| +.+..-|.+.+|++.+....+++-|+.||+|-|...+++.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            356789999999999999999999999998888888899 8888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc------hhHH--HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHH
Q 015136           98 MITSGIGLLSAFS------PNYI--SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALA  168 (412)
Q Consensus        98 ~~~~i~~~~~~~~------~~~~--~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  168 (412)
                      .+.+++..+-..+      +.++  ....+..+.+.++-.. ........-|+|+++|..+..+-.++..+|.+++.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            9999999876554      2344  5667888888887777 44445666789999999999999999999999999998


Q ss_pred             HHHHhcC------ChHH--HHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccC
Q 015136          169 WIVMITL------NWRW--LLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT  239 (412)
Q Consensus       169 ~~l~~~~------~w~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      ..+..+-      .|..  .|+....+..+.+ ...+..++.|+...+..+..+.     +                   
T Consensus       197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~-----~-------------------  252 (480)
T KOG2563|consen  197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ-----D-------------------  252 (480)
T ss_pred             ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh-----c-------------------
Confidence            8887543      3654  3444444333333 3334445544321111100000     0                   


Q ss_pred             CCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 015136          240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTL  319 (412)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (412)
                                                .+-.++.+++++.+   .+.+..+.+......+++....+..-.          
T Consensus       253 --------------------------~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l~~~l----------  293 (480)
T KOG2563|consen  253 --------------------------ASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLLNLAL----------  293 (480)
T ss_pred             --------------------------CcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHhhhcc----------
Confidence                                      00001444455443   445555666666666666665555222          


Q ss_pred             ccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHH-h---hhhhHHHHHHHHHHHHH
Q 015136          320 TVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGR-KLSLTIMLILVFICILPLA-M---LQSNILITGLLVGARMF  394 (412)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr-r~~l~~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~~~~~  394 (412)
                       ...|++...+|.......+++++++++.|.+.||.+. |...++......++...+. .   ....+.......+.|++
T Consensus       294 -~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~  372 (480)
T KOG2563|consen  294 -CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFF  372 (480)
T ss_pred             -ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHh
Confidence             1235666888999999999999999999999999874 4444444444444422222 2   22334555667777888


Q ss_pred             HhhHhHHHHhhccCC
Q 015136          395 AFGAFTIACIFTPEQ  409 (412)
Q Consensus       395 ~~~~~~~~~~~~~e~  409 (412)
                      ..+.+|+..-+..|.
T Consensus       373 ~~~~~Pig~ElgvE~  387 (480)
T KOG2563|consen  373 GTGYLPIGFELGVET  387 (480)
T ss_pred             hcCCCCcceeeeeee
Confidence            888888776666554

>PRK09848 glucuronide transporter; Provisional

Probab=99.74  E-value=1.8e-15  Score=142.41  Aligned_cols=296  Identities=11%  Similarity=-0.005  Sum_probs=168.6

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----cchhHH-HHHHHHHHHHHHHh-hc----chh--H
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY----GRKKGF-LGIAMITSGIGLLS-AF----SPN--Y  113 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~-~~----~~~--~  113 (412)
                      ...+++.+..|+++.++|.+.+...+..++..++.|+++||.    ||||.. +++.+...+..++. ..    .++  .
T Consensus        30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (448)
T PRK09848         30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV  109 (448)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence            344567777899999999999999999999999999999996    777755 55555555444432 21    111  2


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHhcC--ChHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWT-----LGSIFEAALAWIVMITL--NWRWLLALS  184 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~~~~~l~~~~--~w~~~~~~~  184 (412)
                      ...++...+.+++.+.. +...++..|... +++|.+..++-..+.+     ++..++|.+.....+..  +|.....+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~  189 (448)
T PRK09848        110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL  189 (448)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            23344556677777776 555566666554 4678887666554433     44445555544321111  122111222


Q ss_pred             HHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhh
Q 015136          185 SIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRIT  263 (412)
Q Consensus       185 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (412)
                      +++.++.. +.....+|+++.   +.++..                                                  
T Consensus       190 ~v~~~~~~~~~~~~~~e~~~~---~~~~~~--------------------------------------------------  216 (448)
T PRK09848        190 AIAGMVLYFICFKSTRENVVR---IVAQPS--------------------------------------------------  216 (448)
T ss_pred             HHHHHHHHHHHHcCcEeccCC---CccCCC--------------------------------------------------
Confidence            22222221 222223333110   000000                                                  


Q ss_pred             hhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhh
Q 015136          264 KLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELP  343 (412)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (412)
                          ....++.+++++........   .++....+.......+.+.++.          .|.++...++......++.++
T Consensus       217 ----~~~~~~~l~~n~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~  279 (448)
T PRK09848        217 ----LKISLQTLKRNRPLFMLCIG---ALCVLISTFAVSASSLFYVRYV----------LNDTGLFTVLVLVQNLVGTVA  279 (448)
T ss_pred             ----HHHHHHHHhCCchHHHHHHH---HHHHHHHHHHHhhhheeeEeee----------cCChHHHHHHHHHHHHHHHHH
Confidence                00034445554443333222   2222333333334455444332          345444444444444566788


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          344 GLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--SNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       344 g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +.++.+++.||+|+|+.+.++.++.+++.+.+.+.+  +.+...+..++.+++.+...+...+..+|..|
T Consensus       280 ~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~  349 (448)
T PRK09848        280 SAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVE  349 (448)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999999988888777666533  33444455666777778888888888777654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.73  E-value=4.9e-15  Score=134.32  Aligned_cols=311  Identities=20%  Similarity=0.169  Sum_probs=210.4

Q ss_pred             HHHhhHHHhhhhhh-hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hcchh-HHHHHHHHHHHHHHHhh
Q 015136           35 FAEAMEIMILSFIG-PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN----YGRKK-GFLGIAMITSGIGLLSA  108 (412)
Q Consensus        35 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~  108 (412)
                      +............+ -.+.+.+|+++..+|.+..+.=+.-++.-|+.|.+.||    +|||| -++++.+-.++...++.
T Consensus        22 ~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F  101 (467)
T COG2211          22 FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF  101 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH
Confidence            33333333333333 45567789999999999999999999999999999994    78765 45567788888888777


Q ss_pred             cchh------HHHHHHHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 015136          109 FSPN------YISLVTLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-------  173 (412)
Q Consensus       109 ~~~~------~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  173 (412)
                      .+++      ....++...+.+++.... ..-.++..|..+ +++|.+..++-..+.++|..+...+...+.+       
T Consensus       102 ~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~  181 (467)
T COG2211         102 ITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDK  181 (467)
T ss_pred             cCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            6653      445666788889998887 555688888875 6889999999999999997777666666543       


Q ss_pred             cCChHHHHHHHHHHHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          174 TLNWRWLLALSSIPSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       174 ~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                      ..||+....+.+++.++..+ +++-.+|.+..   +++.++                                      .
T Consensus       182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~---~~~~~~--------------------------------------~  220 (467)
T COG2211         182 ALGYQGTALVLGVIGVILLLFCFFNVKERVVE---TQPTKT--------------------------------------G  220 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc---cccCcc--------------------------------------c
Confidence            34788888887777766643 44445554320   000000                                      0


Q ss_pred             CcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHH
Q 015136          253 PLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYL  332 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (412)
                      ..           +.-..++..+++.+.++..++..++..+......+...+...|.             .|.+......
T Consensus       221 ~~-----------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-------------lg~~~l~~~~  276 (467)
T COG2211         221 VK-----------LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-------------LGDPELFAYL  276 (467)
T ss_pred             cc-----------ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-------------cCChHHHHHH
Confidence            00           00000233444544444444433333322222222222222222             3566667777


Q ss_pred             HHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          333 SVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ--SNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       333 ~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      .......+.+++.++..++.+|+|+|+++.++.++.+++.+++.+.+  +....++..++.+++.+...++.+++++|..
T Consensus       277 ~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~v  356 (467)
T COG2211         277 LLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTV  356 (467)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchh
Confidence            77777788888899999999999999999999999999999998855  4455556667888888889999999999864

>TIGR01272 gluP glucose/galactose transporter

Probab=99.73  E-value=3.5e-16  Score=138.93  Aligned_cols=236  Identities=9%  Similarity=0.061  Sum_probs=167.7

Q ss_pred             cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Q 015136          109 FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT-------------  174 (412)
Q Consensus       109 ~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------------  174 (412)
                      ...+++.++++-++.|.|.+.. +...+++++..++|++++.+++.+.+.++|..++|.+++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999998 99999999999999999999999999999999999999988732             


Q ss_pred             ---CChHHHHHHHHHHHHHHHHHHHhc--cCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCC
Q 015136          175 ---LNWRWLLALSSIPSFAVLLLYSLA--PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPP  249 (412)
Q Consensus       175 ---~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                         ..|+++|++.+.+.++..+.+.+.  ||.++      ++++  +.                          .+++. 
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--~~--------------------------~~~~~-  130 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--RV--------------------------SSGDT-  130 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--cc--------------------------ccccc-
Confidence               369999997766555444444343  33210      0000  00                          00000 


Q ss_pred             CCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcc
Q 015136          250 DNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSS  329 (412)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (412)
                      .                    +.+..++   .+..++..+..++......+...|.+.|..+.        +..|.++.+
T Consensus       131 ~--------------------~~~~~~~---~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~--------~~~g~s~~~  179 (310)
T TIGR01272       131 T--------------------QKTSAFQ---FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDP--------HALGLPEDQ  179 (310)
T ss_pred             c--------------------chhhHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCCCCHHH
Confidence            0                    0001112   23334445555555556667777788777432        124788999


Q ss_pred             hHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCC
Q 015136          330 LYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQ  409 (412)
Q Consensus       330 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  409 (412)
                      .+...+....+.++|+++++++.||+|+|+.+.++..+..++.+++...++.. .....++.+++.+..+|...+...+.
T Consensus       180 a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~  258 (310)
T TIGR01272       180 AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNA  258 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999988888877777765555443332 33455578888999999988887776


Q ss_pred             CC
Q 015136          410 LG  411 (412)
Q Consensus       410 ~P  411 (412)
                      +|
T Consensus       259 ~~  260 (310)
T TIGR01272       259 LG  260 (310)
T ss_pred             hh
Confidence            65

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=3.9e-16  Score=139.98  Aligned_cols=316  Identities=17%  Similarity=0.117  Sum_probs=180.7

Q ss_pred             HHHHhhHHHhhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH--HHHHH-Hhhc
Q 015136           34 VFAEAMEIMILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMIT--SGIGL-LSAF  109 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~i~~~-~~~~  109 (412)
                      .+...+...+.-+..+...+ +.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++......  ..+.. ...+
T Consensus        16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~   95 (412)
T PF01306_consen   16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF   95 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455666666776665 48999999999999999999999999999999999777555443322  22222 2222


Q ss_pred             chhH-HHHHHHHHHHhhhcCc----c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          110 SPNY-ISLVTLRGLVGIGIGS----G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       110 ~~~~-~~~~~~r~l~G~~~g~----~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      .+-. ..+.++-.+.|+..+.    . ++.-+++.+..  ++.+.-.|-.....++|.+++..++|.+.+ .+-+..|++
T Consensus        96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi  172 (412)
T PF01306_consen   96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWI  172 (412)
T ss_dssp             HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHH
Confidence            2211 1122333333443333    2 33333332222  344556677888999999999999999887 345667776


Q ss_pred             HHHHHHHHHHHHHhc-cCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          184 SSIPSFAVLLLYSLA-PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      ....+++..++.++. |+.++.....+..+                                   .              
T Consensus       173 ~s~~~~il~lll~~~~~~~~~~~~~~~~~~-----------------------------------~--------------  203 (412)
T PF01306_consen  173 ASAAAIILLLLLLLLKPDVPPQAEVADALG-----------------------------------A--------------  203 (412)
T ss_dssp             HHHHHHHHHHHHHSS---SSSSS-SSTTSS-----------------------------------S--------------
T ss_pred             HHHHHHHHHHHHHHcCCcCchhhhhhcccc-----------------------------------c--------------
Confidence            665555444433333 33221100000000                                   0              


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchh
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGEL  342 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (412)
                      ++.+.+.++..++++.+..+.+.+.   ..+....|+......+.|.+...       ++.+.+....|...+...+.++
T Consensus       204 ~~~~~~~~~~~~l~k~~~fw~~~l~---v~g~~~~Y~vfdqqf~~y~~~~f-------~~~~~g~~~~G~l~s~~v~~E~  273 (412)
T PF01306_consen  204 KKDKVSLKDVLSLFKMRNFWFFVLF---VIGVAAIYDVFDQQFPIYFASFF-------QSAGQGNQMYGYLWSVQVFLEA  273 (412)
T ss_dssp             ------HHHHHHHTTSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTS-------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-------cccccChhHHhHHHHHHHHHHH
Confidence            0000011244455555444433332   22222333333222333322111       1223455668888999999999


Q ss_pred             hHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          343 PGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       343 ~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      +...+..++.+|+|.|+.++++..++++=..+..+.++.+.+...=.+-++-.........-|+++.+|
T Consensus       274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd  342 (412)
T PF01306_consen  274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFD  342 (412)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999998888877776666666655555555555555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.72  E-value=3e-14  Score=132.76  Aligned_cols=293  Identities=18%  Similarity=0.170  Sum_probs=192.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHhhcc-h-hHHHHHHHHHHHhhhcCcc-cccee
Q 015136           60 SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLG-IAMITSGIGLLSAFS-P-NYISLVTLRGLVGIGIGSG-PVFSA  135 (412)
Q Consensus        60 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~-~-~~~~~~~~r~l~G~~~g~~-~~~~~  135 (412)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. + +++...+.-++.-++.+.. ....+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999998776654 444444555555543 3 3444444455555566665 55568


Q ss_pred             eeeecccccch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhc--------CChHHHH
Q 015136          136 WFLEFVPAAKR--------------------------GMWMVIFSTFWTLGSIFEAALAWIVMIT--------LNWRWLL  181 (412)
Q Consensus       136 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~w~~~~  181 (412)
                      ++.|..+++++                          ++..+.-.....+|.++...+.-.+...        .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999988888                          8999998888888888877776665322        2358888


Q ss_pred             HHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhh
Q 015136          182 ALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRI  260 (412)
Q Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (412)
                      .+.++..++. +...+++||.|+....+....-.+...+++.                                      
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~--------------------------------------  271 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW--------------------------------------  271 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH--------------------------------------
Confidence            8887766555 5567778887652111111111111111111                                      


Q ss_pred             hhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc
Q 015136          261 RITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG  340 (412)
Q Consensus       261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
                               ..++++.+.+   .+....+.+++..-....+......|.+          +..|++..+.........+.
T Consensus       272 ---------~t~k~~~~~~---~~~~fLia~~l~~dg~~ti~~~~~i~a~----------~~lg~s~~~l~~~~l~~~i~  329 (477)
T PF11700_consen  272 ---------RTFKEIRKLR---QLFLFLIAYFLYSDGVNTIISFAGIYAT----------EVLGMSTTQLIVFGLVVQIV  329 (477)
T ss_pred             ---------HHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCcCHHHHHHHHHHHHHH
Confidence                     1333333333   3333333334333333333333443332          23579999999999999999


Q ss_pred             hhhHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCC
Q 015136          341 ELPGLVLAGIIVDRAGRK--LSLTIMLILVFICILPLAM--------LQSNILITGLLVGARMFAFGAFTIACIFTPEQL  410 (412)
Q Consensus       341 ~~~g~~~~g~l~dr~grr--~~l~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  410 (412)
                      +++|.++.|++.||+|.|  +++.++.++..+..+.-.+        ..+.+-++++.++.|++.++..+..-++.+|+.
T Consensus       330 a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li  409 (477)
T PF11700_consen  330 AIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI  409 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC
Confidence            999999999999999988  7777766665333332222        456667888888999999999999999999999


Q ss_pred             CC
Q 015136          411 GW  412 (412)
Q Consensus       411 P~  412 (412)
                      |+
T Consensus       410 P~  411 (477)
T PF11700_consen  410 PP  411 (477)
T ss_pred             CC
Confidence            85

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.1e-16  Score=129.51  Aligned_cols=291  Identities=16%  Similarity=0.110  Sum_probs=189.4

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMIT  100 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~  100 (412)
                      +|...+...|+..+..++.....+....++..+.+++.++..++.+.|..-..+.+++.|++.|| +|-|..-++-+.+.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            45566666777778888888888888889999999999999999999999999999999999995 78887777777777


Q ss_pred             HHHHHHhh---cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          101 SGIGLLSA---FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       101 ~i~~~~~~---~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      .++.++.+   .++.+|.+.++|++.|+|.-.. .+-..+..-|+..|+.+.++|+......+|..+-..+.+++.+..+
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            77776664   4689999999999999987666 5556899999999999999999999999999887777777765432


Q ss_pred             h------HHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChH-HHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCC
Q 015136          177 W------RWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTT-EARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPP  249 (412)
Q Consensus       177 w------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
                      =      +....+...+........+..      ....+-.+ .+++.+++    ++...                    
T Consensus       201 ~~~~~~ghT~LG~~l~~~~~tc~~slic------al~lg~~D~rAerilh~----e~g~~--------------------  250 (459)
T KOG4686|consen  201 RMFPGVGHTLLGLWLCFEVKTCKQSLIC------ALSLGLSDDRAERILHL----EEGFL--------------------  250 (459)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhhHHHHHHhh----hcCcc--------------------
Confidence            1      111111101100000000000      00001111 11111110    00000                    


Q ss_pred             CCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcc
Q 015136          250 DNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSS  329 (412)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (412)
                      .+.++.+              +.++ ++++ .+.....++++....+.+++.   -|.++          .+.+|+++..
T Consensus       251 Ge~pkLt--------------dv~~-f~pp-fw~~~iicv~yyva~fPFi~l---g~~fF----------~~rfGlS~~~  301 (459)
T KOG4686|consen  251 GEEPKLT--------------DVNT-FYPP-FWVLVIICVLYYVAWFPFITL---GPMFF----------QKRFGLSAVS  301 (459)
T ss_pred             cCCcccc--------------cccc-cCcc-HHHHHHHHHHHHHHHHHHhhh---hHHHH----------HHhhCCChhh
Confidence            0000000              1111 1223 344444555555444444433   23332          2346799999


Q ss_pred             hHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 015136          330 LYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFIC  371 (412)
Q Consensus       330 ~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~  371 (412)
                      ++...+.......+.+++.|.++||.|++...+.+..+..+.
T Consensus       302 a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~  343 (459)
T KOG4686|consen  302 AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLL  343 (459)
T ss_pred             ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHH
Confidence            999988888889999999999999999998877766554443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=2.7e-15  Score=139.45  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=128.5

Q ss_pred             hhhhhhhhhhcCCCc--------chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch----h
Q 015136           45 SFIGPAVKSEWGVSP--------SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP----N  112 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~--------~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~  112 (412)
                      ....+...++.|.++        ++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    +
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~  307 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG  307 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            344455566666543        5679999999999999999999999999999999999999988876665532    2


Q ss_pred             HHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhc------CChHHHHHHH
Q 015136          113 YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFS-TFWTLGSIFEAALAWIVMIT------LNWRWLLALS  184 (412)
Q Consensus       113 ~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~------~~w~~~~~~~  184 (412)
                      .+.+++.+++.|++.+.. +....++.|++|+++|+++.|+.+ ...++|..+||.+++.+.++      +||+..|.+.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~  387 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            456777899999998887 777888999999999999999997 67889999999999999886      4699999988


Q ss_pred             HHHHHHH-HHHHHhccCC
Q 015136          185 SIPSFAV-LLLYSLAPES  201 (412)
Q Consensus       185 ~~~~~~~-~~~~~~~~~~  201 (412)
                      +++.++. ++.+++++|+
T Consensus       388 ~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            8776665 4455666765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.64  E-value=6.4e-15  Score=143.44  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecc
Q 015136           63 SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFV  141 (412)
Q Consensus        63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~  141 (412)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+.. +...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456777899999999999999999999999999999999998888888888888888888877776 77889999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCc
Q 015136          142 PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESP  202 (412)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  202 (412)
                      |++.|++++|+..+...+|.+++|.+++.+.+. +...+|++.+++.++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764 456777777777776666666778874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.63  E-value=1.8e-13  Score=123.19  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHhhHHHhhhhh-hhhhhhhcC----CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFI-GPAVKSEWG----VSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMIT  100 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~  100 (412)
                      +..+...-+...+..+.+... .-++..+++    +|+++..-+.+.|..-.-+..+++|+++||+ |+|+++++|.++.
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~  102 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILM  102 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            444455566666665555543 345555666    9999998888888888888899999999995 9999999999999


Q ss_pred             HHHHHHhhcch--hHHHHHHHHHHHhhhcCcc-ccceeeeeeccccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015136          101 SGIGLLSAFSP--NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAA--KRGMWMVIFSTFWTLGSIFEAALAWIVMITL  175 (412)
Q Consensus       101 ~i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  175 (412)
                      .+|-++.+.++  +...++++..+.++|.|.. +...+++.|.+|++  +|-...+++.++.++|++++|.+.+++.+++
T Consensus       103 ~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~  182 (498)
T COG3104         103 AIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY  182 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh
Confidence            99999998884  7888999999999999999 99999999999865  4777888999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhcc
Q 015136          176 NWRWLLALSSIPSFAVLLLYSLAP  199 (412)
Q Consensus       176 ~w~~~~~~~~~~~~~~~~~~~~~~  199 (412)
                      ||+..|...++-..+.++..+..+
T Consensus       183 g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999887777766655554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=1e-14  Score=134.90  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=126.1

Q ss_pred             hhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           45 SFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        45 ~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      ....|. +.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334554 4577899999999998888888889999999999999999988877766665555555567777788888888


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccC
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPE  200 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  200 (412)
                      +++.|.. +....+..|..| ++|++++++.+...++|..+++.+++.+.+..||+..|++.+++.++..+..++.||
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8877765 555566778887 469999999999999999999999999999999999999888877777766666654

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.63  E-value=5e-15  Score=138.29  Aligned_cols=149  Identities=11%  Similarity=0.029  Sum_probs=126.7

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-c
Q 015136           53 SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-P  131 (412)
Q Consensus        53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~  131 (412)
                      ++.+.+..+.|++.++..++..++.++.|++.||+|+|+.+..+.++.+++..+..++++.+.+.+.+++.|++.+.. +
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            334667778899999999999999999999999999999999999999998888888899999889999999988776 6


Q ss_pred             cceeeeeecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHhccCC
Q 015136          132 VFSAWFLEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-YSLAPES  201 (412)
Q Consensus       132 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~  201 (412)
                      ....++.|.+|++.|++..+. ++....+|.++++.+.+++.+..|||..|.+.+++.++..+. +...+++
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            667888999999999887665 677888999999999999999999999999988776665443 4444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=1.1e-15  Score=119.49  Aligned_cols=135  Identities=27%  Similarity=0.328  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeeccccc
Q 015136           66 STVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAA  144 (412)
Q Consensus        66 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~  144 (412)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++.+.+.+.+++.|++.+.. +....++.|..|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788999999999999999999999999999999888888899999999999999999887 78888999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH-HhccC
Q 015136          145 KRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLY-SLAPE  200 (412)
Q Consensus       145 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~  200 (412)
                      +|++..++.+....+|..+++.+.+.+.+..+|++.+.+.+...++..+.. +..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999998999999998887766664443 33443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=4.2e-14  Score=128.77  Aligned_cols=164  Identities=27%  Similarity=0.328  Sum_probs=144.7

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHHhhcch
Q 015136           34 VFAEAMEIMILSFIGPAVKSEW-GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK-GFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~  111 (412)
                      .+.............|.+.++. |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444455556667776665 999999999999999999999999999999999999 99999999999999999888


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      +.+...+..++.|++.+.. +....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence            8899999999999999998 888899999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHh
Q 015136          191 VLLLYSL  197 (412)
Q Consensus       191 ~~~~~~~  197 (412)
                      ..+..++
T Consensus       344 ~~i~~~~  350 (352)
T cd06174         344 AALLLLL  350 (352)
T ss_pred             HHHHhee
Confidence            6555433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.60  E-value=3e-14  Score=132.60  Aligned_cols=160  Identities=20%  Similarity=0.115  Sum_probs=129.8

Q ss_pred             HHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015136           41 IMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR  120 (412)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  120 (412)
                      ........|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.++....++.+.+.+..
T Consensus       236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            33444556788888999999999999999999999999999999999999998887777777766667777777777778


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHhc
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      ++.|++.+.. +...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++. +|...++......++..+..+++
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877666 777788999999999999999999999999999999999998865 45666666555555554444444


Q ss_pred             cC
Q 015136          199 PE  200 (412)
Q Consensus       199 ~~  200 (412)
                      .+
T Consensus       396 ~~  397 (406)
T PRK11551        396 VS  397 (406)
T ss_pred             hc
Confidence            33

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=1.5e-14  Score=133.02  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=124.9

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHH
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNY--ISLVTLRGLV  123 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~  123 (412)
                      ...+.+.+++|.+.++.+++.+.+.++..++.++.|++.||+|||+.+..+.++.+++.++..+.++.  ..+++..++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            34455678889999899999999999999999999999999999999999998888888777666543  3344567788


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      |++.+.. +....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888876 6667788999999999999999999999999999999999999999999999887766554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.58  E-value=7.9e-13  Score=116.79  Aligned_cols=291  Identities=15%  Similarity=0.130  Sum_probs=187.9

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----chhHHHH-HHHHHHHHHHHhhc-----ch------
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG-----RKKGFLG-IAMITSGIGLLSAF-----SP------  111 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~-----~~------  111 (412)
                      -.+..|++++....+.+.++..+... ..+.+|+.+|+.+     ||..+++ |..++..+..+..+     +.      
T Consensus         4 RVMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    4 RVMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            34667899999999999999888776 4899999999999     8877765 45555554444332     12      


Q ss_pred             -h--HH--HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH-HHH
Q 015136          112 -N--YI--SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL-ALS  184 (412)
Q Consensus       112 -~--~~--~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~-~~~  184 (412)
                       +  .+  ...+...+.|+|.+.. ....++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.++-.-.. .+.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence             1  22  2334456678888887 777899999999999999999999999999999999999988877633332 222


Q ss_pred             H--HHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          185 S--IPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       185 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      +  ++.+...+...+-.|.+.....+.++++                                      ++         
T Consensus       163 ~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~--------------------------------------~~---------  195 (403)
T PF03209_consen  163 GVALIALLLNLIALWGQEPRRSRRAAAAERP--------------------------------------RP---------  195 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcccccCCCCC--------------------------------------Cc---------
Confidence            2  2222222222333333211000000000                                      00         


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchh
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGEL  342 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (412)
                          +-...+++++..+..+++.....   ...+.++.....+..|.          .+.+|++..+...+....+.+.+
T Consensus       196 ----~f~~a~~~~~~~~~a~~f~~fl~---l~t~a~~~QD~iLEPyg----------g~Vfgmsv~eTT~Lta~~~~G~L  258 (403)
T PF03209_consen  196 ----PFREAWRQVWASPQARRFFVFLF---LGTLAFFMQDVILEPYG----------GEVFGMSVGETTRLTAFWGGGTL  258 (403)
T ss_pred             ----cHHHHHHHHHhCCChhHHHHHHH---HHHHHHHhhHHHcCCch----------hHHcCCCHHHHHHHHHHHHHHHH
Confidence                00014444554444444333322   23345555555555444          45578999999999999999999


Q ss_pred             hHHHHHHHHHH-hhchhhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHhhHhHHHHh
Q 015136          343 PGLVLAGIIVD-RAGRKLSLTIMLILVFICILPLAM---LQSNILITGLLVGARMFAFGAFTIACI  404 (412)
Q Consensus       343 ~g~~~~g~l~d-r~grr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (412)
                      +|....|++.. |.++++.-..++..++++..++..   ..+.+.+-...++.|++.+.......+
T Consensus       259 ~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals  324 (403)
T PF03209_consen  259 LGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALS  324 (403)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999998877 577788888888888887776664   445556666677777766654433333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.58  E-value=8.7e-14  Score=129.17  Aligned_cols=156  Identities=17%  Similarity=0.134  Sum_probs=129.8

Q ss_pred             hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           44 LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      .....+.+.++.|.  ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++....++.+.+++.+++.
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33445555556665  3456677888899999999999999999999999999888888888887888888888889999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCC
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPES  201 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  201 (412)
                      |++.+.. +.....+.|..|+++||++.++++....+|..+++.+.+.+.++.||++.|++.+++.++..+..++++++
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9998876 66667777899999999999999999999999999999999999999999999888777766555555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=8.4e-14  Score=128.17  Aligned_cols=150  Identities=16%  Similarity=0.182  Sum_probs=125.0

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCc
Q 015136           50 AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~  129 (412)
                      .+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+........++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577899999999988888888888899999999999999999888777666665556667888888888999998887


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccC
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPE  200 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  200 (412)
                      . +....++.|..|+ +++++.++.+....+|..++|.+.+.+.+..||+..|++.++..++..+...+++|
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            6 6667778888775 56799999999999999999999999999999999999988877776666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.56  E-value=2e-12  Score=113.96  Aligned_cols=291  Identities=17%  Similarity=0.139  Sum_probs=192.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHhhcchh--HH-HHHHHHHHHhhhcCcc-ccce
Q 015136           60 SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLG-IAMITSGIGLLSAFSPN--YI-SLVTLRGLVGIGIGSG-PVFS  134 (412)
Q Consensus        60 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~~~--~~-~~~~~r~l~G~~~g~~-~~~~  134 (412)
                      +..+...++..+..++-+|+.|.++|+.|+||..+. ...+..++.++..+.++  .+ ..++...+..++.... ..-.
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            456788889999999999999999999997775554 44444555555555544  44 4445567777777777 4455


Q ss_pred             eeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH--HH----------------hcCChHHHHHHHHHHHHHH-HHHH
Q 015136          135 AWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI--VM----------------ITLNWRWLLALSSIPSFAV-LLLY  195 (412)
Q Consensus       135 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~----------------~~~~w~~~~~~~~~~~~~~-~~~~  195 (412)
                      +++.+..++++-++..++-.....+|..+.-...-.  +.                +...-|..+.+.++..++. +..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            899999999888888888666667776655444311  11                1223577777777665555 4445


Q ss_pred             HhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhc
Q 015136          196 SLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLL  275 (412)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  275 (412)
                      +..++.++-.  .+......+..+++                                               +.+++++
T Consensus       218 ~~v~~~~~~~--~~~~~~l~~g~k~L-----------------------------------------------~~t~k~i  248 (438)
T COG2270         218 LNVHDAEKIS--SPPPTALRNGFKEL-----------------------------------------------KSTFKEI  248 (438)
T ss_pred             hccccccccc--ccchHHHHHHHHHH-----------------------------------------------HHHHHHH
Confidence            5555544310  01101111111111                                               1144555


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhh
Q 015136          276 FSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  355 (412)
                      ++++....+++..+.+.-   ...+.......|..          ..+|.+..+..+......+..++|+++.|++.||+
T Consensus       249 ~~~~~i~~FLiA~~~~~D---Gv~til~~~~~fg~----------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf  315 (438)
T COG2270         249 RGRKNLVLFLIARFFYID---GVNTILAMGGVFGA----------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF  315 (438)
T ss_pred             hcccchHHHHHHHHHHHh---hHHHHHHHHHHHHH----------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554444444444333321   11122222222221          23579999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          356 GRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       356 grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      |.|+++.++.++..+..+...+.......+++.++.|.+.++..+..-+|.+++.|+
T Consensus       316 g~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~  372 (438)
T COG2270         316 GSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPK  372 (438)
T ss_pred             CCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence            999999999988888888777766677777888899999999999999999999885

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.4e-13  Score=126.79  Aligned_cols=152  Identities=14%  Similarity=0.010  Sum_probs=132.3

Q ss_pred             HHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015136           41 IMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR  120 (412)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  120 (412)
                      ...+....|.+.+++|.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.+..++...+.+++++.+.+++.+
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            33444455666678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFS-TFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      ++.|+..+.. +....++.+. |+++|++..++++ ...++|..+++.++|.+.++.|+ ..|+..+.++++..+.
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999998 8888899988 9999999999976 57889999999999999999986 6677776666655444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=2e-13  Score=129.23  Aligned_cols=169  Identities=19%  Similarity=0.161  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH--
Q 015136           29 YAGLAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL--  105 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~--  105 (412)
                      .+++..++............|. +.+++|.|..+.++..+...++..++.++.|+++||+|||+.+..+..+..++..  
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~  341 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLG  341 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence            3344444444444445556665 4577999999999999999999999999999999999999877665544443332  


Q ss_pred             HhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHh----------
Q 015136          106 LSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMI----------  173 (412)
Q Consensus       106 ~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~----------  173 (412)
                      .....++.....+.+++.|++.... ........|.+|++.||++.|+.+...++ |..++|.+.+.+.+          
T Consensus       342 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~  421 (467)
T PRK09556        342 VYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFG  421 (467)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccc
Confidence            2233456666667788888654332 33335566999999999999999988886 77999999999999          


Q ss_pred             --cCChHHHHHHHHHHHHHHHHHHHh
Q 015136          174 --TLNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       174 --~~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                        ..+|+..|.+..+..++..+..++
T Consensus       422 ~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        422 YTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHHH
Confidence              578999998887766665544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.54  E-value=2e-13  Score=127.42  Aligned_cols=159  Identities=18%  Similarity=0.089  Sum_probs=134.6

Q ss_pred             hhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015136           44 LSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL  122 (412)
Q Consensus        44 ~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  122 (412)
                      .....|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            34456666666 89999999999999999999999999999999888888888888888888888888888888888889


Q ss_pred             HhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHhccC
Q 015136          123 VGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV-LLLYSLAPE  200 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~  200 (412)
                      .|++.+.. +...+++.|..|+++||+++|++.....+|..+|+.+.+.+.+..|++..+.+.+...++. .+....+++
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            99988776 6667888999999999999999999999999999999999999999999888877655554 455556666


Q ss_pred             Cc
Q 015136          201 SP  202 (412)
Q Consensus       201 ~~  202 (412)
                      .+
T Consensus       402 ~~  403 (417)
T PRK10489        402 LR  403 (417)
T ss_pred             cc
Confidence            53

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.54  E-value=1.4e-13  Score=128.27  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=126.4

Q ss_pred             hhhhhhhhhhhhcCCCcch----hHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136           43 ILSFIGPAVKSEWGVSPSA----ESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT  118 (412)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~----~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  118 (412)
                      ...+..+.+.++.+.+..+    .+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+.....++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGI  316 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3344455555554333332    456666777888899999999999999999999998888888777777788888888


Q ss_pred             HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 015136          119 LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       119 ~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      .+++.|++.+.. +...+.+.+..|+++||+.+++.+....+|..+||.+++.+.+..||+..|++.+++.++..+..++
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999887 7777788888899999999999999999999999999999999999999999998877776554433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.54  E-value=4.5e-12  Score=110.26  Aligned_cols=262  Identities=18%  Similarity=0.125  Sum_probs=164.2

Q ss_pred             HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 015136           42 MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRG  121 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  121 (412)
                      ..-++..-.+.+++|++..|++.+....+....+..++.|.++||+|||+.-+..+++.+++++ +-..++++.++++|+
T Consensus        51 WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRv  129 (354)
T PF05631_consen   51 WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRV  129 (354)
T ss_pred             HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence            4455666677789999999999999999999999999999999999999999999999999886 455689999999999


Q ss_pred             HHhhhcCcc-ccceee-eeecc----cccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHH
Q 015136          122 LVGIGIGSG-PVFSAW-FLEFV----PAAKRGMWMVIFS-TFWTLGSIFEAALAWIVMITLNW--RWLLALSSIPSFAVL  192 (412)
Q Consensus       122 l~G~~~g~~-~~~~~~-i~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w--~~~~~~~~~~~~~~~  192 (412)
                      +.|++.... .+--++ +.|+-    |++..+...+... ...++-.+....++..+.+..+.  ..+|....+..++..
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~  209 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA  209 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            999999987 655554 44553    3333333333333 23334455556666667666554  677777766655554


Q ss_pred             HH-HHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccc
Q 015136          193 LL-YSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSS  271 (412)
Q Consensus       193 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (412)
                      +. ....+|+.....   +..+..+..++                                                  .
T Consensus       210 ~~I~~~W~ENyg~~~---~~~~~~~~~~~--------------------------------------------------a  236 (354)
T PF05631_consen  210 VLILKTWPENYGDTS---SSSSLSGSFRE--------------------------------------------------A  236 (354)
T ss_pred             HHHHhcccccCCCcc---cccchHHHHHH--------------------------------------------------H
Confidence            33 333455432100   00000000000                                                  1


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHH-HHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHH
Q 015136          272 FLLLFSSRLVRTTLLLWMLFFGNSFTYYGI-ILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGI  350 (412)
Q Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~  350 (412)
                      ++.++++   ++.+.......+.-.+.|.+ ..|.|.+..+             .....-|+.+..+.++.++|+.+..+
T Consensus       237 ~~~i~~d---~ril~LG~~qslFE~smy~FVflWtPaL~~~-------------~~~~P~GlIFssFM~a~MlGS~lf~~  300 (354)
T PF05631_consen  237 WRAILSD---PRILLLGLIQSLFEGSMYLFVFLWTPALDPD-------------DEELPLGLIFSSFMVAMMLGSSLFSR  300 (354)
T ss_pred             HHHHHcC---chhHHHHHHHHHHHHHHHHheeeeeceecCC-------------CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            2222222   34444555555555555554 4577765511             12234688888888888999988866


Q ss_pred             HHH-hhchhhHHHHHHHHHHHHHH
Q 015136          351 IVD-RAGRKLSLTIMLILVFICIL  373 (412)
Q Consensus       351 l~d-r~grr~~l~~~~~~~~~~~~  373 (412)
                      +.. +......+.....+.++++.
T Consensus       301 l~s~~~~~e~~l~~v~~~aa~~l~  324 (354)
T PF05631_consen  301 LLSKSLRPESLLRYVFAVAAVSLA  324 (354)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHH
Confidence            554 44444444444444444443

>PRK12382 putative transporter; Provisional

Probab=99.53  E-value=2.2e-13  Score=126.15  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=128.0

Q ss_pred             hhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015136           43 ILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL  122 (412)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  122 (412)
                      ......|.+.++.+.+.  .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+..++
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            34444555556666653  4666777888889999999999999999999999999888888888788888888888999


Q ss_pred             HhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015136          123 VGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYS  196 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  196 (412)
                      .|++.+.. +...+.+.|.+|+++||++.|+.+....+|..++|.+.+.+.++.||+..|.+.+++.++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99998877 777778889999999999999999999999999999999999999999999998877776654433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.53  E-value=1.4e-13  Score=131.58  Aligned_cols=145  Identities=17%  Similarity=0.124  Sum_probs=113.8

Q ss_pred             hhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHH
Q 015136           45 SFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS--PNYISLVTLRG  121 (412)
Q Consensus        45 ~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r~  121 (412)
                      ....|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.+.+.+..+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            34566666 5899999999999999999999999999999999999999888877766665443332  33444444445


Q ss_pred             HHhhh-cCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015136          122 LVGIG-IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSF  189 (412)
Q Consensus       122 l~G~~-~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~  189 (412)
                      +.+.. .+..+....++.|.+|+++|++++++......+|..++|.+++.+.++.||+..+...+....
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            44433 333355667888999999999999999999999999999999999999999988866554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.53  E-value=4.6e-13  Score=123.86  Aligned_cols=149  Identities=20%  Similarity=0.164  Sum_probs=119.6

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHH
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL-LSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~  123 (412)
                      +...|.+.+++|.|..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++.. +....++.+.+.+..++.
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            3344556666899999999999999999999999999999999988754 44444444443 334566778888888899


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLY  195 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~  195 (412)
                      |++.+.. +.....+.|..| ++|++++|+......+|..+||.+++.+.++.|++..|++.+++.++..+..
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            9988766 656667777766 6889999999999999999999999999999999999999988777665443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.53  E-value=2.4e-11  Score=108.73  Aligned_cols=336  Identities=15%  Similarity=0.075  Sum_probs=203.1

Q ss_pred             HHhhhhhhhhhhhh-cCCCcchhH-HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136           41 IMILSFIGPAVKSE-WGVSPSAES-LLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT  118 (412)
Q Consensus        41 ~~~~~~~~~~~~~~-~~~s~~~~~-~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  118 (412)
                      +..-+...|.+.+. .|++..|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+..+.++...+-+
T Consensus        20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~   99 (412)
T PF01770_consen   20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQL   99 (412)
T ss_pred             CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHH
Confidence            34455666777776 788888774 5566677778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHH
Q 015136          119 LRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI--TLNWRWLLALSSIPSFAVLLLYS  196 (412)
Q Consensus       119 ~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~  196 (412)
                      ..+..|++.+...+-.+++-...|+++--++.+...++.-+|..++..++..+..  ..+++...++......+.++..+
T Consensus       100 ~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~  179 (412)
T PF01770_consen  100 MQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIAL  179 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988877777888888898998999999999999999999999998877  34466666666665566667777


Q ss_pred             hccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhcc
Q 015136          197 LAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLF  276 (412)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (412)
                      ++|..++...-+++..+..+       .++       ...+..++.++...+.++++... ........+.-.+++++..
T Consensus       180 fLP~~~~S~~f~r~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~y  244 (412)
T PF01770_consen  180 FLPMPKRSLFFHRKPPAEQD-------ANE-------SESDKMNESPESSSSTEKSPSTE-SSSRKSVLRLLWKDFKSCY  244 (412)
T ss_pred             HcCCCCcccceeccCccccc-------ccc-------ccccccccccccccccccCcccc-cchHHHHHHHHHHHHHHHh
Confidence            88876543222221111000       000       00000000000000000000000 0001111112223444444


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhc
Q 015136          277 SSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAG  356 (412)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g  356 (412)
                      +.+....   ..+-|.....+++....+...+..+.        .+.+.....-|..-....+.+.++.+..|++..++.
T Consensus       245 ~~~~ll~---WSlWWa~atcgy~qv~nYvQ~LW~~v--------~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  245 SNPRLLL---WSLWWAFATCGYYQVINYVQSLWDTV--------PPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             cCchHHH---HHHHHHHHHhHHHHHHHHHHHHHHhc--------CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            4332222   12222222222332222222222211        011233344566777777778888899999866666


Q ss_pred             hhh--HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHH
Q 015136          357 RKL--SLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIA  402 (412)
Q Consensus       357 rr~--~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (412)
                      +..  .+....++.+.+++++...++.+...+..++.+.......++.
T Consensus       314 ~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  314 RWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543  3334445556666666677777777776666665555444443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.52  E-value=3.5e-13  Score=122.62  Aligned_cols=184  Identities=18%  Similarity=0.127  Sum_probs=146.6

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSE--WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR-KKGFLGI   96 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~   96 (412)
                      ++.+|+.+.+..+..++.....+++.+..-++.++  .+.+.+..|++.++..++.+++++..|+...|.+. |+.++.|
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            56778888888888888888877777666555566  67778888999999999999999999999999997 8889999


Q ss_pred             HHHHHHHHHHh-hc---ch-hHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015136           97 AMITSGIGLLS-AF---SP-NYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV  171 (412)
Q Consensus        97 ~~~~~i~~~~~-~~---~~-~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  171 (412)
                      .++..++.++. ++   .+ ..+.++++|++.|+|.|.....-+|+++....+.|.++++....+..+|..+||.+...+
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            99999999877 32   23 678889999999999998888889999998899999999999999999999999988776


Q ss_pred             Hhc--CC-----------hHHHHHHHHHHHHHHHH-HHHhccCCch
Q 015136          172 MIT--LN-----------WRWLLALSSIPSFAVLL-LYSLAPESPR  203 (412)
Q Consensus       172 ~~~--~~-----------w~~~~~~~~~~~~~~~~-~~~~~~~~~~  203 (412)
                      ..-  .|           +..+-++.+++.++.++ +.++++|.++
T Consensus       189 ~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  189 TPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            431  11           23445666666666544 4555666654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.52  E-value=1.1e-13  Score=130.37  Aligned_cols=156  Identities=14%  Similarity=0.139  Sum_probs=124.9

Q ss_pred             hhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHH--HHHHHHHHHHHhhcchhH
Q 015136           38 AMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGFLG--IAMITSGIGLLSAFSPNY  113 (412)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~  113 (412)
                      ...........|.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.++....+++
T Consensus       254 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  333 (455)
T TIGR00892       254 FLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDY  333 (455)
T ss_pred             HHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            33333444456677778899999999999999999999999999999984  34433333  334444555556677888


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWLLALSSIPSFAV  191 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~  191 (412)
                      +.+++.+++.|++.+.. +...+++.|.+|++++++++|+.+...++|..+||.+++.+.+.. +|++.|++.++..++.
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~  413 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA  413 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence            88899999999999887 777888999999999999999999999999999999999998876 5999999988766554


Q ss_pred             HH
Q 015136          192 LL  193 (412)
Q Consensus       192 ~~  193 (412)
                      .+
T Consensus       414 ~~  415 (455)
T TIGR00892       414 GL  415 (455)
T ss_pred             HH
Confidence            43

>PRK03699 putative transporter; Provisional

Probab=99.51  E-value=2.9e-13  Score=125.27  Aligned_cols=167  Identities=10%  Similarity=0.048  Sum_probs=130.4

Q ss_pred             HHHHHhhHHHhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch
Q 015136           33 AVFAEAMEIMILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  111 (412)
                      ..+........+....|.+. +++|.|..+.+.+.+.+.++..++.++.|+++||+|||+.+.....+..+...+....+
T Consensus       213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~  292 (394)
T PRK03699        213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC
Confidence            33333334444555666665 67899999999999999999999999999999999999999888877777666666677


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      +.+.+.+..++.|++.+.. +...++..|..| +++++..+.......+|..++|.+.+.+.+..||+..++..+++.++
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~  371 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAV  371 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHH
Confidence            7777777778888877765 665566666665 45678888988899999999999999999999999999888877666


Q ss_pred             HHHHHHhccC
Q 015136          191 VLLLYSLAPE  200 (412)
Q Consensus       191 ~~~~~~~~~~  200 (412)
                      ..+.....++
T Consensus       372 ~~~~~~~~~~  381 (394)
T PRK03699        372 VFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHH
Confidence            6554444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=7.3e-13  Score=122.08  Aligned_cols=151  Identities=17%  Similarity=0.158  Sum_probs=123.4

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVG  124 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G  124 (412)
                      ....|.+.++.|.+.++.++..+...++..+++++.|++.||+|+|+.+..+..+.+++.+...  . ........++.|
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            3456777778899999999999999999999999999999999999999888888777665443  2 233345667778


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      ++.... |...+.+.|..|+++++...+......++|.++||.+++.+.++.+|++.|.+.+.+.++..+..+..
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            776665 77788888999988888888888889999999999999999999999999999887776655554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.51  E-value=7.6e-13  Score=125.87  Aligned_cols=178  Identities=19%  Similarity=0.149  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG  104 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  104 (412)
                      ..+....+..+.............|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33444444444444444455667788889999999888999999999999999999999999999999999888887776


Q ss_pred             HHhhc-----ch------hHHHHHHHHH-HHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          105 LLSAF-----SP------NYISLVTLRG-LVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus       105 ~~~~~-----~~------~~~~~~~~r~-l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      ++..+     .+      +...+....+ ..+.+.+..+....++.|.+|+++|++++++.+...++|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66542     11      2222222222 233333333566678899999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHH-HHhccCCc
Q 015136          173 ITLNWRWLLALSSIPSFAVLLL-YSLAPESP  202 (412)
Q Consensus       173 ~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  202 (412)
                      ++.+|++.|++.+++.++..+. .++.||++
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            9899999999888777766554 34456543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.50  E-value=2.1e-15  Score=142.47  Aligned_cols=306  Identities=16%  Similarity=0.152  Sum_probs=3.0

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  109 (412)
                      +++..+.+..........+.++.+.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++
T Consensus         8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence            34444555666777778899999999999999999999999999999999999999988888888999999999887754


Q ss_pred             c----h----------------------------------------------hHHHHHHHHHHHhhhcCcc-ccceeeee
Q 015136          110 S----P----------------------------------------------NYISLVTLRGLVGIGIGSG-PVFSAWFL  138 (412)
Q Consensus       110 ~----~----------------------------------------------~~~~~~~~r~l~G~~~g~~-~~~~~~i~  138 (412)
                      -    +                                              -+..++++.++.|+|.... +...+|+-
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            1    0                                              0244778899999999998 99999999


Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------C-ChHHHHHHHHHHHHHHHHHHH
Q 015136          139 EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT---------------------L-NWRWLLALSSIPSFAVLLLYS  196 (412)
Q Consensus       139 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------------~-~w~~~~~~~~~~~~~~~~~~~  196 (412)
                      |..++++-+..+|+..+...+|.++|.++++.+.+.                     . .|..-|++.+.+.++..+.++
T Consensus       168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876531                     1 266667777776666666666


Q ss_pred             hccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhcc
Q 015136          197 LAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLF  276 (412)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (412)
                      ++|++.+...+.++.++.++  .+.   +             +.+.++..+ .++..      ....+.+.-....++++
T Consensus       248 ~FPk~lp~~~~~~~~~~~~~--~~~---~-------------~~~~~~~~~-~~~~~------~~~~~~~df~~~l~~Ll  302 (539)
T PF03137_consen  248 FFPKKLPGTSERQEEKESSE--RKE---E-------------DSDKDSFKD-PKSKK------SFGKSIKDFPKALKRLL  302 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCccCCCcccccchhhhhh--cch---h-------------hhhhhcccc-ccccc------chhhhhhhHHHHHHHHh
Confidence            66654321100000000000  000   0             000000000 00000      00000011112333344


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHc-chhhHHHHHHHHHHhh
Q 015136          277 SSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASL-GELPGLVLAGIIVDRA  355 (412)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~g~l~dr~  355 (412)
                      +.+   .+....+..........++..+.|.|..          .+++.++..+.+......+ +..+|.+++|++.+|+
T Consensus       303 ~Np---~f~~~~la~~~~~~~~~G~~tF~pKylE----------~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~  369 (539)
T PF03137_consen  303 TNP---VFMCLILAGVFESFIVSGFATFLPKYLE----------SQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKF  369 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEe
Confidence            333   3334444445556666777788887774          3467888887777655444 5678899999999997


Q ss_pred             c--hhhHHHHHHHHHHHHHH
Q 015136          356 G--RKLSLTIMLILVFICIL  373 (412)
Q Consensus       356 g--rr~~l~~~~~~~~~~~~  373 (412)
                      +  .|..+....+...++.+
T Consensus       370 kl~~~~~~~~~~v~~~v~~~  389 (539)
T PF03137_consen  370 KLSARGAAKFCIVVSIVSVI  389 (539)
T ss_dssp             --------------------
T ss_pred             cCcHHHHHHHHHHHHHHHHH
Confidence            5  45555444444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.48  E-value=1.8e-12  Score=119.78  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=123.7

Q ss_pred             hHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch-hHHHHH
Q 015136           39 MEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP-NYISLV  117 (412)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~  117 (412)
                      ..........|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ 
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-
Confidence            3444455566777777999999999999999999999999999999999999999988888777766554323 32222 


Q ss_pred             HHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHH-
Q 015136          118 TLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALSSIPSFAVLL-  193 (412)
Q Consensus       118 ~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~-  193 (412)
                       .-++.|++.+.. +.......+..+ +++|++..++.+....++..++|.+.+++.+..| |...|.+..+..++..+ 
T Consensus       298 -~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK09705        298 -WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII  376 (393)
T ss_pred             -HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence             234567877776 665555566664 6789999999999999999999999999999876 78888887766665544 


Q ss_pred             HHHhccCCc
Q 015136          194 LYSLAPESP  202 (412)
Q Consensus       194 ~~~~~~~~~  202 (412)
                      ...+.||++
T Consensus       377 ~~~~~~~~~  385 (393)
T PRK09705        377 TLRFAPARF  385 (393)
T ss_pred             HHHhccccc
Confidence            355666654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.47  E-value=2.1e-11  Score=112.68  Aligned_cols=322  Identities=19%  Similarity=0.142  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcch-hHHHHHH----HHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSA-ESLLSTV----VFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~s~----~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      .+.....+-.+..+..........+...+.++.+..+ .+.....    ..+...+.++..|.++||+|||..+....+.
T Consensus        22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            3444455555555555555556666666666543322 2333333    3677889999999999999999999999998


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhhhcCc--c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          100 TSGIGLLSAFSPNYISLVTLRGLVGIGIGS--G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       100 ~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~--~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      ..+..+...+.. +|.++    +.|+..+.  . ....++++|....++|....|+.+.....+..++|.+++.+.+..|
T Consensus       102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~  176 (463)
T KOG2816|consen  102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG  176 (463)
T ss_pred             HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            888887776655 33333    55554443  2 6677999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcc
Q 015136          177 WRWLLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLL  255 (412)
Q Consensus       177 w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (412)
                      .-..|.+..+..++.. ...+++||+.....+++  .+.                       .+.+........      
T Consensus       177 ~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~--~~~-----------------------~~~~~~~~~~~~------  225 (463)
T KOG2816|consen  177 IALVFLIAAASGILSLLYMLLFLPESLQEKERSD--ATL-----------------------RELTPGSLDSSH------  225 (463)
T ss_pred             chHHHHHHHHHHHHHHHHHhhccccccCcccccc--ccc-----------------------cccCCCcccchh------
Confidence            9999999888777764 45677888643111000  000                       000000000000      


Q ss_pred             cchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccccccccccccccCCCCcchHHHH
Q 015136          256 TSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIIL-MTSKLSSTQSKCGTTLTVSQSMHDSSLYLSV  334 (412)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (412)
                               ..+   .+....+.+..|..+..+...+.......+-.. ....|          .....+.++.+.+...
T Consensus       226 ---------~~~---~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~y----------l~~~f~w~~~~~s~~~  283 (463)
T KOG2816|consen  226 ---------VAD---AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLY----------LKAKFGWNKKEFSDLL  283 (463)
T ss_pred             ---------hhh---hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEE----------EeeecCcCHHHHHHHH
Confidence                     000   111111111112222222222222111111111 11222          2234689999999888


Q ss_pred             HHHHcchhhHHHHHH-HHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhh
Q 015136          335 FLASLGELPGLVLAG-IIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIF  405 (412)
Q Consensus       335 ~~~~~~~~~g~~~~g-~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (412)
                      +.....+.+++.+.. .+...+|-|+....|.....+....+.+.++.|..+....+..+ .....|...++
T Consensus       284 ~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~-~~~~~pa~~s~  354 (463)
T KOG2816|consen  284 SLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL-AGIVFPAIRAF  354 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh-hcchhHHHHhH
Confidence            888999999998777 77777898889999999999999999988777765554444332 23334444333

>TIGR00897 2A0118 polyol permease family

Probab=99.47  E-value=1.9e-12  Score=120.18  Aligned_cols=164  Identities=14%  Similarity=0.114  Sum_probs=123.4

Q ss_pred             HHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHhh----
Q 015136           34 VFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFL-GIAMITSGIGLLSA----  108 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~----  108 (412)
                      .++............|.+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..+++.+...    
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~  310 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ  310 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344445556778888899999999999999999999999999999999999988764 33333333332222    


Q ss_pred             -cchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015136          109 -FSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIP  187 (412)
Q Consensus       109 -~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~  187 (412)
                       ..++.+.+.+..++.|++.+........+.|. ++++||++.|+.+....+|..++|.+++.+.+..||+..+++.+++
T Consensus       311 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~  389 (402)
T TIGR00897       311 HFGHSFAVALIIAIALGIFLAGYVPLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL  389 (402)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence             13456667778888888877652223445565 4568999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHhc
Q 015136          188 SFAVLLLYSLA  198 (412)
Q Consensus       188 ~~~~~~~~~~~  198 (412)
                      .++..+...++
T Consensus       390 ~~i~~~~~~~~  400 (402)
T TIGR00897       390 YVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHh
Confidence            77665554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=1.4e-12  Score=123.72  Aligned_cols=304  Identities=15%  Similarity=0.164  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL  105 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  105 (412)
                      .+.++++..+.+++....+...+.++.+.|+++.++.|++.+.+-++..+...+..+...|.-|-+.+-+|.++++++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            45556677777777778888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhcc--------------------h---------------------------h----HH-HHHHHHHHHhhhcCcc-cc
Q 015136          106 LSAFS--------------------P---------------------------N----YI-SLVTLRGLVGIGIGSG-PV  132 (412)
Q Consensus       106 ~~~~~--------------------~---------------------------~----~~-~~~~~r~l~G~~~g~~-~~  132 (412)
                      ++++-                    +                           +    ++ .++++.++.|+|.... +.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            87651                    0                           0    22 4667899999999998 99


Q ss_pred             ceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHH
Q 015136          133 FSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-------------------NWRWLLALSSIPSFAVLL  193 (412)
Q Consensus       133 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------------~w~~~~~~~~~~~~~~~~  193 (412)
                      ..+|+-|...+++-...+|+..+...+|.++|.++++++...+                   -|+.-|++.+.+.++..+
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~  337 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV  337 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999976421                   277778888888887777


Q ss_pred             HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchh
Q 015136          194 LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFL  273 (412)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (412)
                      .++++|.+.+.   .+++.++++    .+..                  .++....++.....+      ..+.-....+
T Consensus       338 p~f~fPk~lp~---~~~~~~~~~----~~~~------------------k~~~~~~~~~~~~~~------~ikdfp~s~~  386 (735)
T KOG3626|consen  338 PLFFFPKELPK---SQKRKRARD----LHVL------------------KTESGGAKSDKTFGK------KIKDFPKSIK  386 (735)
T ss_pred             HHHhCcccCcc---ccccchhhh----hccc------------------ccccccccCCcchhh------hHHHHHHHHH
Confidence            77788765431   111100000    0000                  000000000000000      0000011334


Q ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcc-hhhHHHHHHHHH
Q 015136          274 LLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLG-ELPGLVLAGIIV  352 (412)
Q Consensus       274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~g~l~  352 (412)
                      ++++.+   .+....+...+....+.+...++|.|+.          .++|.++..+...+...++. ..+|.+++|++.
T Consensus       387 ~ll~N~---if~~~~l~~~~~~~~~~G~~tFlPKyLE----------~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~ii  453 (735)
T KOG3626|consen  387 RLLSNP---IFMLVVLASVIESLAITGYITFLPKYLE----------TQFGISASLANILTGSIGVPAAAVGIFLGGLII  453 (735)
T ss_pred             HHhcCc---hHHHHHHHHHHHHHHHhhHHHhhHHHHH----------HHcCCCHHHHHHHhhhhhhhhhhhhhhccceee
Confidence            444443   3444555566667777888888998874          44788888888877555544 457888999999


Q ss_pred             Hhhc--hhhHHHHHHHHHHHHHH
Q 015136          353 DRAG--RKLSLTIMLILVFICIL  373 (412)
Q Consensus       353 dr~g--rr~~l~~~~~~~~~~~~  373 (412)
                      .|+.  .|......++...++++
T Consensus       454 kkfkl~~r~~a~~~~~~~~l~l~  476 (735)
T KOG3626|consen  454 KKFKLSARGAAKFVIVCSVLSLL  476 (735)
T ss_pred             eeecccHHHHHHHHHHHHHHHHH
Confidence            9974  44444444444444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.46  E-value=4.6e-12  Score=120.66  Aligned_cols=162  Identities=16%  Similarity=0.055  Sum_probs=121.4

Q ss_pred             HHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch--h-HH-HH
Q 015136           41 IMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP--N-YI-SL  116 (412)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~-~~-~~  116 (412)
                      ........|.+.++.|.+.....+......++..++.++.++++||+|||+.++.+.++.+++.++.....  + .+ ..
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33445567888899999888778887888889999999999999999999999999999888877654321  1 11 22


Q ss_pred             HHHHHHHhhhcCc-c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH------hcCChHHHHHHHHHHH
Q 015136          117 VTLRGLVGIGIGS-G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM------ITLNWRWLLALSSIPS  188 (412)
Q Consensus       117 ~~~r~l~G~~~g~-~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~w~~~~~~~~~~~  188 (412)
                      ..+.++.+.+.+. . +....++.|.+|+++|++++|+......+|..+++.+.+.+.      +..+|++.|++.++..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            2334444444443 2 667789999999999999999999999999988876665443      5788999898887766


Q ss_pred             HHHHHH-HHhccCCc
Q 015136          189 FAVLLL-YSLAPESP  202 (412)
Q Consensus       189 ~~~~~~-~~~~~~~~  202 (412)
                      ++..+. +++.||++
T Consensus       447 ~~~~~~~~~~~~e~~  461 (479)
T PRK10077        447 VLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHhccccCC
Confidence            665444 44566653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.44  E-value=3.6e-12  Score=121.74  Aligned_cols=172  Identities=19%  Similarity=0.083  Sum_probs=115.0

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHH------------HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESL------------LSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ...+......+......|.+.++.|.+..+.+.            ...+..++..++.++.++++||+|||+.++++..+
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~  374 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFI  374 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHH
Confidence            333333333344455578888888887543221            23344456667889999999999999999888887


Q ss_pred             HHHHHHHhhcchh----HHHHHHHHHHHhh-hcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136          100 TSGIGLLSAFSPN----YISLVTLRGLVGI-GIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT  174 (412)
Q Consensus       100 ~~i~~~~~~~~~~----~~~~~~~r~l~G~-~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  174 (412)
                      .+++.++.+...+    ...+...-+...+ +.+..+....+.+|.+|++.|+++.|+.+....+|.+++|.+.+.+.+.
T Consensus       375 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       375 LTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            7777655543221    1111111111222 2222355667789999999999999999999999999999999998873


Q ss_pred             ----------CChHHHHHHHHHHHHHHHHHHHhccCCch
Q 015136          175 ----------LNWRWLLALSSIPSFAVLLLYSLAPESPR  203 (412)
Q Consensus       175 ----------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (412)
                                .++...|++.+++.++..+..+++||++.
T Consensus       455 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence                      34566777777666666555667788743

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.43  E-value=2.9e-12  Score=119.16  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=112.2

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHhhhc
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL-LSAFSPNYISLVTLRGLVGIGI  127 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~r~l~G~~~  127 (412)
                      +.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+..+..+... .....++.+.+.+..++.|+..
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            445567899999999999999999999999999999999999998888776643332 3334456666666667777766


Q ss_pred             Ccc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 015136          128 GSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALS  184 (412)
Q Consensus       128 g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~  184 (412)
                      +.. +...+++.|.+|+++|++++|+.+....+|..++|++.+.+.++.| |+..+...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            655 6677888999999999999999999999999999999999999888 87766553

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.43  E-value=2.9e-12  Score=118.65  Aligned_cols=165  Identities=18%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             HHHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh--HHH------HHHHHHH
Q 015136           31 GLAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK--GFL------GIAMITS  101 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~--~~~------~~~~~~~  101 (412)
                      .+..+.............|.+ .+++|.+..+.+++.+...++..++.++.|++.||+|||+  ...      .+.++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T TIGR00893       221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS  300 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            344444444445555555555 5668999999999999999999999999999999999996  111      1111111


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHH
Q 015136          102 GIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWL  180 (412)
Q Consensus       102 i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~  180 (412)
                      +........++.+.......+.+.+.+..+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+..| |+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~  380 (399)
T TIGR00893       301 LLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA  380 (399)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence            222222223344444444455555555237888899999999999999999999999999999999999999888 9999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015136          181 LALSSIPSFAVLLLY  195 (412)
Q Consensus       181 ~~~~~~~~~~~~~~~  195 (412)
                      |.+.++..++..+..
T Consensus       381 ~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       381 LMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988887766654443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.43  E-value=7.3e-12  Score=117.37  Aligned_cols=141  Identities=19%  Similarity=0.169  Sum_probs=106.3

Q ss_pred             hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           44 LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      .....|.+.++.|.++.+.+...+...++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            44456777778899999999999999999999999999999999999999888877766655443322211122222333


Q ss_pred             hhh--cCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015136          124 GIG--IGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALS  184 (412)
Q Consensus       124 G~~--~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~  184 (412)
                      |++  .... +....++.|.+|+++||+++|+......+|..++|.+.+.+.++.|+....++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            332  2222 445567789999999999999999999999999999999999988876544433

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=8.1e-12  Score=117.15  Aligned_cols=157  Identities=13%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             hhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc---c-hhHHHHHHH
Q 015136           45 SFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF---S-PNYISLVTL  119 (412)
Q Consensus        45 ~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~~~~~  119 (412)
                      ....| .+.+++|.+.+....+.....+...++.++.|+++||+|||+.++.+.++..++......   . ++.+.+++.
T Consensus       270 ~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK09952        270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS  349 (438)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            33444 445678888877666666677778889999999999999999988887766554433322   2 234444555


Q ss_pred             HHHHhhhcCcc-ccceeeeeecccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFS-TFWTLGSIFEAALAWIVMITL--NWRWLLALSSIPSFAVLLLY  195 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~--~w~~~~~~~~~~~~~~~~~~  195 (412)
                      .++.|++.+.. +...+++.|.+|++.|+.+.++.. .+..+|..++|.+.+.+.+..  +|+..+.+.++..++..+..
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~  429 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            66777887776 677788999999999999999854 445589999999999998743  48888887777777776666


Q ss_pred             HhccCC
Q 015136          196 SLAPES  201 (412)
Q Consensus       196 ~~~~~~  201 (412)
                      +.++|+
T Consensus       430 ~~~~~~  435 (438)
T PRK09952        430 LLMKDN  435 (438)
T ss_pred             HHcccc
Confidence            666664

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.42  E-value=2.9e-12  Score=107.91  Aligned_cols=177  Identities=20%  Similarity=0.109  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015136           23 QYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSG  102 (412)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i  102 (412)
                      ||..+..........+ ..+.++.+.|.+++++|+|.+|...+.+.-.+|..+ +++.|.+.|++|+|.++++|.+...+
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4565555555444444 567888999999999999999999999999999987 58899999999999999999999999


Q ss_pred             HHHHhhcc-------hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136          103 IGLLSAFS-------PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT  174 (412)
Q Consensus       103 ~~~~~~~~-------~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  174 (412)
                      |..+...+       .++|.+.+..++.|.+.+.. ........+.+| ++||++.|+.-...++++.+-..+...+.+.
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            98766432       46788888888888876665 555555567887 6899999999999999998887777776655


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhccCCc
Q 015136          175 LNWRWLLALSSIPSFAVLLLYSLAPESP  202 (412)
Q Consensus       175 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~  202 (412)
                      ..-+..+.....+.++.++...++++.|
T Consensus       158 ~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  158 DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            4444544444455555555556665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=1.9e-12  Score=119.85  Aligned_cols=158  Identities=16%  Similarity=0.156  Sum_probs=120.5

Q ss_pred             HHHHHHhhHHHhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH--HHhh
Q 015136           32 LAVFAEAMEIMILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG--LLSA  108 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--~~~~  108 (412)
                      +..+.............|.+. +++|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+..  ....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       226 GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555566665 7789999999999999999999999999999999999998876555444333  1222


Q ss_pred             c--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHH
Q 015136          109 F--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLN-WRWLLAL  183 (412)
Q Consensus       109 ~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~  183 (412)
                      .  .++.+.+.+..++.|++.+.. +...+++.|.+|+++|+++.++ .+....+|..++|.+++.+.++.| |+..++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            2  246667777788888888776 7788999999999999999998 456667889999999999999888 8887776


Q ss_pred             HHHHHH
Q 015136          184 SSIPSF  189 (412)
Q Consensus       184 ~~~~~~  189 (412)
                      .....+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.40  E-value=1.1e-11  Score=117.57  Aligned_cols=155  Identities=13%  Similarity=0.184  Sum_probs=119.5

Q ss_pred             hhhhhhhhcCCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---hcc-hhHHHHHHHHH
Q 015136           47 IGPAVKSEWGVSPSAESLLST-VVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---AFS-PNYISLVTLRG  121 (412)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~s-~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r~  121 (412)
                      ..|.+.+++|.|.++.++..+ ...++..++.++.|+++||+|+|+.+.++.++.+++.+..   +.. ++.+.+.+.-+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            445556789999999999974 6668999999999999999999998877666555544322   232 35555555566


Q ss_pred             HHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccC
Q 015136          122 LVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPE  200 (412)
Q Consensus       122 l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  200 (412)
                      +..++.|.. +...++..+..+++.+++..++.+...++|..+++.+.+.+.+..||+..|.+.+++.++..+....+++
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            655555554 5556777788898999999999999999999999999999999999999999988888877666555554


Q ss_pred             C
Q 015136          201 S  201 (412)
Q Consensus       201 ~  201 (412)
                      +
T Consensus       405 ~  405 (491)
T PRK11010        405 T  405 (491)
T ss_pred             c
Confidence            3

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.40  E-value=8.9e-12  Score=117.61  Aligned_cols=150  Identities=18%  Similarity=0.131  Sum_probs=133.8

Q ss_pred             hhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           45 SFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        45 ~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      ...+|.+. +++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+...+..++.
T Consensus       238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA  317 (524)
T ss_pred             HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            34567665 56899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      |++.... ....+.+-+..|++.|||+++++.+....+..+|..+.|.+.+..|-+..+.+.++..++..++
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9998877 6667888899999999999999999999999999999999999999999988877655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.40  E-value=8.7e-12  Score=115.60  Aligned_cols=139  Identities=15%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccce
Q 015136           56 GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFS  134 (412)
Q Consensus        56 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~  134 (412)
                      +.+....|...++..+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++.+.. ....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667898999999999999999999999999999999999988888887778889998888999999987665 4555


Q ss_pred             eeeeecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          135 AWFLEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       135 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      .+..+..+++.+++..+. .+....+|..+++.+++++.+..||+..|.+.+++.++..+.
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            677777888888887766 678899999999999999999999999999988877666443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.4e-11  Score=109.76  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=133.5

Q ss_pred             HHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc-chhH
Q 015136           35 FAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF-SPNY  113 (412)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~  113 (412)
                      +........+++.-|.+.+..|.|.+.++++.-.+.++..+|..+.|++.|| +.|+.+.....+.++..+...+ .++.
T Consensus       222 l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         222 LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH
Confidence            3334445667788899999999999999999999999999999999999999 9999999888888777766554 4555


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~  192 (412)
                      +..++.-++.|+..+.. ......+++ .-+|.+..+.+++....++|..+|..+++.+.+++|+....++.++..++..
T Consensus       301 ~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~  379 (394)
T COG2814         301 ALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLAL  379 (394)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            66666677777777766 455566667 4568999999999999999999999999999999999999999998887776


Q ss_pred             HHHHh
Q 015136          193 LLYSL  197 (412)
Q Consensus       193 ~~~~~  197 (412)
                      +..+.
T Consensus       380 ~~~~~  384 (394)
T COG2814         380 LLALL  384 (394)
T ss_pred             HHHHH
Confidence            55444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.39  E-value=1e-11  Score=117.53  Aligned_cols=149  Identities=11%  Similarity=0.014  Sum_probs=103.7

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-------HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK-------GFLGIAMITSGIGLLSAFSPNYISLVTLRG  121 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  121 (412)
                      +.+.+++|.+..+.+.+.+++.++..++.++.|+++||+|||+       ...+..++.++..++....++.+...+..+
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3446778999999999999999999999999999999998762       233333333333444455556665555556


Q ss_pred             HHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhcc
Q 015136          122 LVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAP  199 (412)
Q Consensus       122 l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~  199 (412)
                      +.+++.+.. ....+++.+.. +++||.+.|+.+.+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++++
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            666655444 44455556654 478999999988877777777766543 22345699999999877777766655554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.39  E-value=1.3e-11  Score=116.39  Aligned_cols=164  Identities=14%  Similarity=0.055  Sum_probs=110.9

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHH-HHHHHHHHHHHHHh
Q 015136           32 LAVFAEAMEIMILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGF-LGIAMITSGIGLLS  107 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~~~~~~~i~~~~~  107 (412)
                      +..+......+......|.+.+ ++|.+..+.++..+.+.++..++.++.|+++||+  |||+.. .....+..++.+..
T Consensus       260 l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~  339 (452)
T PRK11273        260 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  339 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence            3333333333445556666655 4799999999999999999999999999999999  555432 22223333333222


Q ss_pred             hc--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHhcCChHHHHHH
Q 015136          108 AF--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIF-EAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       108 ~~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~w~~~~~~  183 (412)
                      ..  ..+.+...+..++.|.+.... .....+..|.+|+++||+++|+.+....+|..+ +|.+.+.+.++.||+..|++
T Consensus       340 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~  419 (452)
T PRK11273        340 WLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  419 (452)
T ss_pred             HHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence            22  234444444555555543222 233345679999999999999999888887654 79999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 015136          184 SSIPSFAVLLLY  195 (412)
Q Consensus       184 ~~~~~~~~~~~~  195 (412)
                      .+..+++.++..
T Consensus       420 ~~~~~~~~~~~~  431 (452)
T PRK11273        420 MIGGSILAVILL  431 (452)
T ss_pred             HHHHHHHHHHHH
Confidence            887666664443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.38  E-value=1.7e-11  Score=114.89  Aligned_cols=164  Identities=15%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             HHHHHHhhHHHhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHH-HH---HHHHHHHHH
Q 015136           32 LAVFAEAMEIMILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGF-LG---IAMITSGIG  104 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~-~~---~~~~~~i~~  104 (412)
                      +..+.............|.+. +++|.+..+.+...+.+.++..++.++.|+++||+  ++|+.. ..   +..+..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~  329 (434)
T PRK11663        250 FSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSL  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence            333333444444555566665 67899999999999999999999999999999999  333322 22   222222222


Q ss_pred             HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          105 LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       105 ~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      .... ..+.....+..+..|++.... ........|.+|+++|++++|+.+....+|..++|.+.+.+.++.||+..|++
T Consensus       330 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~  408 (434)
T PRK11663        330 WLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVV  408 (434)
T ss_pred             HHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHH
Confidence            2222 233333334444445433222 22334567999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 015136          184 SSIPSFAVLLLYS  196 (412)
Q Consensus       184 ~~~~~~~~~~~~~  196 (412)
                      .+++.++..+...
T Consensus       409 ~~~~~~~~~~~~~  421 (434)
T PRK11663        409 ISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887776654443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.38  E-value=1.8e-11  Score=112.84  Aligned_cols=144  Identities=10%  Similarity=-0.057  Sum_probs=120.6

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGI  125 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~  125 (412)
                      ...|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++....++.+.+++..++.|+
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  305 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG  305 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34455557799999999999999999999999999999999999999999999999888888888999999999999999


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFS-TFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      +.+.. +....++.+. +++++++..+..+ ...++|..+||.++|.+.+..|+ ..++..+.+.++.
T Consensus       306 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        306 TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            98887 7777777776 5666788888876 66678889999999999999887 4566666555544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=7e-12  Score=114.80  Aligned_cols=131  Identities=20%  Similarity=0.178  Sum_probs=116.8

Q ss_pred             hhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHH
Q 015136           46 FIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPN-YISLVTLRGLV  123 (412)
Q Consensus        46 ~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~r~l~  123 (412)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            556777665 8999999999999999999999999999999999999999888888888777777664 88888889999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      |++.+.. +...+++.|..|+++|+++.++.+....+|..+++.+++.+.++.|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999887 7788899999999999999999999999999999999999988654

>TIGR00895 2A0115 benzoate transport

Probab=99.36  E-value=1.2e-11  Score=114.68  Aligned_cols=140  Identities=21%  Similarity=0.201  Sum_probs=111.9

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP  111 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  111 (412)
                      +..+.............|.+.+++|.+..+.+...+...++..++.++.|++.||+|||+......+.......+....+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (398)
T TIGR00895       257 LLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344444445556667888899999999999999999999999999999999999999554444433333333333356


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV  171 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  171 (412)
                      +.+...+..++.|++.+.. +...+++.|.+|+++|+++.|+......+|..++|.+++.+
T Consensus       337 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       337 SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            7777778889999998887 78889999999999999999999999999999999998875

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.36  E-value=4.2e-11  Score=111.86  Aligned_cols=160  Identities=19%  Similarity=0.244  Sum_probs=137.7

Q ss_pred             HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHhhc--------ch
Q 015136           42 MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRK--KGFLGIAMITSGIGLLSAF--------SP  111 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~  111 (412)
                      .+.........+++|++..+...+.-+..+...+|++++|++.||+|.|  ++++.+.+++.+..+...+        .+
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~  378 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK  378 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence            3444445556669999999999999999999999999999999999999  8888888888666555444        57


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALSSIPSF  189 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~  189 (412)
                      +.+.+.+.-++.|+..|.. +..-++.+|..|+++.+...|++....-....+||++.+.+.+..| -|+.+....++.+
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~  458 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFL  458 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            8888999999999999998 8888999999999999999999999999999999999999998776 8898888888777


Q ss_pred             HHHHHHHhccCC
Q 015136          190 AVLLLYSLAPES  201 (412)
Q Consensus       190 ~~~~~~~~~~~~  201 (412)
                      +.+++++.++.+
T Consensus       459 ~gl~ll~~v~~~  470 (477)
T PF11700_consen  459 IGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHhhccch
Confidence            777777666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.35  E-value=3e-11  Score=113.36  Aligned_cols=142  Identities=14%  Similarity=0.172  Sum_probs=102.3

Q ss_pred             HhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH----hhcch
Q 015136           37 EAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL----SAFSP  111 (412)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~----~~~~~  111 (412)
                      ............|.+.++ +|.+..+.++....+.++..++.++.|+++||+|||+.++.+..+..+....    ....+
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  329 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAP  329 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333444555566776554 8999999999999999999999999999999999999888765544332211    11223


Q ss_pred             hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCChH
Q 015136          112 NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFST-FWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       112 ~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      +.....+..++.|++.+.. +....++.|.+|+++|+++.++... +..++..++|.+.+.+.++.|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            4444444455566666655 5556788999999999999998644 44445778999999999988864

>PRK10504 putative transporter; Provisional

Probab=99.35  E-value=1.7e-11  Score=116.41  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             hhHHHhhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc---hhH
Q 015136           38 AMEIMILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS---PNY  113 (412)
Q Consensus        38 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~  113 (412)
                      ...........|.+.+ .+|.++.+.++......++..++.++.+++.||+|||+++..+..+.+++..+..+.   ++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
T PRK10504        274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY  353 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH
Confidence            3334445556676665 589999999999999999999999999999999999999999988888776655443   334


Q ss_pred             HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          114 ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       114 ~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      +.+.+..++.|++.+.. +.......+..|++.++.+.++.+....+|..+|+.+++.+.+..++
T Consensus       354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44455667778887776 66677788889999999999999999999999999999998776654

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.33  E-value=2.3e-10  Score=105.23  Aligned_cols=180  Identities=17%  Similarity=0.135  Sum_probs=139.2

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS  101 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~  101 (412)
                      .|+.....+.+.......+.+....+...+.++-|++..+..+.+....+...+..+++..+.||+|||+.++.+..++.
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA  346 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            34444445555555555666777788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcch---hHH------HHHHHHHHHhh--hcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          102 GIGLLSAFSP---NYI------SLVTLRGLVGI--GIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       102 i~~~~~~~~~---~~~------~~~~~r~l~G~--~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      +..+++....   +..      ..+++.++..+  +.|..|...-+.+|.+|++.|..++++......+...+-......
T Consensus       347 ~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~  426 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP  426 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887765431   111      12344444444  444447788889999999999999999999999988888888888


Q ss_pred             HHhcCChHHHHHHHHHHHHHH-HHHHHhccCCc
Q 015136          171 VMITLNWRWLLALSSIPSFAV-LLLYSLAPESP  202 (412)
Q Consensus       171 l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~  202 (412)
                      +.+..|= +.|....++.++. +..+..+||++
T Consensus       427 l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  427 LQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            8777775 6666666666655 56688899985

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.32  E-value=2.9e-11  Score=111.88  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=110.5

Q ss_pred             hhhhhhhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc------chhHHHHHHH
Q 015136           47 IGPAVKSEWGVSPSAESLLSTVVF-AGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF------SPNYISLVTL  119 (412)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~  119 (412)
                      ..+.+.+|.|++++++|++.+... ....++.++.|++.||+|+|+.+..+..+.++.......      .++...+...
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            345556678999999999988876 466778899999999999999988877665333322211      2233344444


Q ss_pred             HHHHhhhcCcc-ccceeeeeecccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPA-AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLL  193 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~  193 (412)
                      ..+.+++.+.. +...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+..||+..|...+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            55666666666 5556666666665 88999999999999999999999999999999999999888776665433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.31  E-value=3.1e-11  Score=115.69  Aligned_cols=148  Identities=21%  Similarity=0.132  Sum_probs=113.2

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHhhhc
Q 015136           50 AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNY--ISLVTLRGLVGIGI  127 (412)
Q Consensus        50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~r~l~G~~~  127 (412)
                      ...++++.+.   .+...+..+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.
T Consensus       348 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            3344455443   333445566778889999999999999999999999988888777666543  44455556666666


Q ss_pred             Ccc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCc
Q 015136          128 GSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESP  202 (412)
Q Consensus       128 g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  202 (412)
                      +.. +....+..|.+|++.|++++|+.+....+|.+++|.+.+ +. ..++...+.+.+...++..+..+++||+.
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            665 677789999999999999999999999999999999988 43 35677777887777777766677888864

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.31  E-value=7.2e-11  Score=111.08  Aligned_cols=130  Identities=20%  Similarity=0.250  Sum_probs=105.4

Q ss_pred             hhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHh
Q 015136           47 IGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-PNYISLVTLRGLVG  124 (412)
Q Consensus        47 ~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~G  124 (412)
                      ..+.+.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+++..+..+.+++.+...+. ++.+.+.+..++.|
T Consensus       244 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  322 (437)
T TIGR00792       244 VQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAG  322 (437)
T ss_pred             hhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHH
Confidence            34444433 34 56677888888899999999999999999999999999998888887766554 45667777788889


Q ss_pred             hhcCcc-ccceeeeeeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          125 IGIGSG-PVFSAWFLEFVP-------AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      ++.+.. +...++++|..+       ++++|...|+.+....+|..+++.+.+.+.+..||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       323 FGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            998887 777777777754       55689999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.31  E-value=8.8e-11  Score=110.11  Aligned_cols=159  Identities=11%  Similarity=-0.025  Sum_probs=101.5

Q ss_pred             Hhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh----cchhHHHH
Q 015136           42 MILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA----FSPNYISL  116 (412)
Q Consensus        42 ~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~----~~~~~~~~  116 (412)
                      +.+....|.+ .+++|.+.++.+...++..++..+++++.|+++||+|||+.+.++.++.++......    ..++....
T Consensus       260 ~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        260 YTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3344455655 466899998999999988888899999999999999999988776665443332111    12232222


Q ss_pred             HHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          117 VTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       117 ~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      +..-.+.+++.+.. +....+..|.+|++.|++++|+.+...++ .....|.+.+.+.....|...+++.++..++..+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            22222222333333 44557788999999999999998765554 34447777775544333655666655555555555


Q ss_pred             HHhccC
Q 015136          195 YSLAPE  200 (412)
Q Consensus       195 ~~~~~~  200 (412)
                      .+++++
T Consensus       420 ~~~l~~  425 (432)
T PRK10406        420 SLMLHR  425 (432)
T ss_pred             HHHhhh
Confidence            445443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=1e-10  Score=104.09  Aligned_cols=155  Identities=12%  Similarity=0.097  Sum_probs=117.5

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhhhhh---hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015136           29 YAGLAVFAEAMEIMILSFIGPAVKS---EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGL  105 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  105 (412)
                      +..+..+.........+...+.+.+   .+|+++++.++..+.+..+..+|.++.+++.||+|+|+.+.++..+..++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3445555555445555555555554   3689999999999999999999999999999999999999888888887776


Q ss_pred             HhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015136          106 LSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALS  184 (412)
Q Consensus       106 ~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~  184 (412)
                      +....++.... ..-++.|++.+.. |...+...+..|+ +.+++.++. ....+|.+++|++.+.+.|..|.+..|++.
T Consensus       224 l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       224 GAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            66555544333 3555788888887 8888888777764 355666765 566789999999999999999988888754


Q ss_pred             HH
Q 015136          185 SI  186 (412)
Q Consensus       185 ~~  186 (412)
                      .+
T Consensus       301 ~~  302 (310)
T TIGR01272       301 VP  302 (310)
T ss_pred             HH
Confidence            43

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10054 putative transporter; Provisional

Probab=99.28  E-value=6.3e-11  Score=109.61  Aligned_cols=142  Identities=13%  Similarity=0.012  Sum_probs=116.0

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHhhhcCcc-
Q 015136           53 SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-PNYISLVTLRGLVGIGIGSG-  130 (412)
Q Consensus        53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r~l~G~~~g~~-  130 (412)
                      ++.+.+....+++.+...+.....+++.|++.||+++|+.+..+..+.+++.....+. ++.+.+.+..++.|+|.+.. 
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777888888888888888999999999999999999988888887766654 56777777888999998876 


Q ss_pred             ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015136          131 PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLY  195 (412)
Q Consensus       131 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~  195 (412)
                      |...+.+.+..|++.|++..+..+ ...+|..+||.+++.+.++.|....|++.+....+..+..
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            777788889999999999988755 5668999999999999999998888888766655554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=7.1e-11  Score=110.95  Aligned_cols=160  Identities=14%  Similarity=0.029  Sum_probs=108.3

Q ss_pred             hhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHHHhhc--chhHHHH
Q 015136           43 ILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS---GIGLLSAF--SPNYISL  116 (412)
Q Consensus        43 ~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~--~~~~~~~  116 (412)
                      ......|.+.+ ..|.++.+.++..+.+.++..++.++.|+++||+++++....+..+..   ++......  ..+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            34445565554 579999999999999999999999999999999975432223322221   11121111  2233433


Q ss_pred             HHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HH
Q 015136          117 VTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLG-SIFEAALAWIVMITLNWRWLLALSSIPSFAV-LL  193 (412)
Q Consensus       117 ~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~  193 (412)
                      ....++.|++.... ........|.+|+++||+++|+.+....+| .+++|.+.+.+.++.||...+.+.....++. +.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            44445555543222 222345679999999999999998887776 5789999999999999999998877665555 44


Q ss_pred             HHHhccCCc
Q 015136          194 LYSLAPESP  202 (412)
Q Consensus       194 ~~~~~~~~~  202 (412)
                      ..+.++|++
T Consensus       429 ~~~~~~~~~  437 (438)
T TIGR00712       429 LIVVMIGEK  437 (438)
T ss_pred             HHHHHhhcc
Confidence            456667654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.26  E-value=8.3e-11  Score=109.44  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=110.4

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhhc--CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHHH
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSEW--GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKG-FLGIAMITSGIGLL  106 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~~~  106 (412)
                      ..+.+++.......+....|.+.+++  +.+..+.+...+...++..++.++.|+++||++||+. .....++.+++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~  326 (412)
T TIGR02332       247 YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL  326 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH
Confidence            34444444555556667788888875  5677888999999999999999999999999998774 33444444444333


Q ss_pred             hhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 015136          107 SAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALS  184 (412)
Q Consensus       107 ~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~  184 (412)
                      ....++.....++-.+.+++.... +.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..| |++.+++.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       327 ASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            222323222222222333333222 3334555678999999999999999999999999999999998774 99988876


Q ss_pred             HHHH
Q 015136          185 SIPS  188 (412)
Q Consensus       185 ~~~~  188 (412)
                      ++..
T Consensus       407 ~~~~  410 (412)
T TIGR02332       407 AALL  410 (412)
T ss_pred             HHHH
Confidence            6543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.26  E-value=2.4e-10  Score=105.67  Aligned_cols=144  Identities=15%  Similarity=0.129  Sum_probs=113.8

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-HHHHHHHhhcchhHHHHHHHHHHHh
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLLSAFSPNYISLVTLRGLVG  124 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~r~l~G  124 (412)
                      ...|.+.+++|.+.++.+...+.+.++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++.|
T Consensus       238 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        238 YIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3457778889999999999999999999999999999999964 4444444444 3333444455667777888889999


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      ++.+.. +...+++.+..| ++++++.++.....++|..+|+.+++.+.+..|++..+...+++.++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            998887 666777888776 567788888888889999999999999999999999888877655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.25  E-value=1.3e-10  Score=107.07  Aligned_cols=147  Identities=17%  Similarity=0.118  Sum_probs=109.5

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHh
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA-FSPNYISLVTLRGLVG  124 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~l~G  124 (412)
                      ...|.+.+.+|.++++.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+...+..++.+
T Consensus       221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344666677899999999999999999999999999999999999999988888887776554 3455555556666666


Q ss_pred             hhcCcc-ccce-eeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHH
Q 015136          125 IGIGSG-PVFS-AWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT-LNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       125 ~~~g~~-~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w~~~~~~~~~~~~~~~~~  194 (412)
                      ++.... +... ....+..+++.++.+  ..+....+|..+||.+++.+.+. .+|++.+.+.++..++.+..
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            665443 3333 333344444555544  34667889999999999999985 68999999987766655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.24  E-value=3.2e-10  Score=105.38  Aligned_cols=147  Identities=14%  Similarity=0.162  Sum_probs=106.4

Q ss_pred             hhhhhhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---hcc-hhHHHHHHHH--
Q 015136           48 GPAVKSEWGVSPSAESLLSTVVF-AGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---AFS-PNYISLVTLR--  120 (412)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~r--  120 (412)
                      .+.+.+++|.++++.+++.+... ++..++.++.|++.||+|+|+.+..+..+..+..+..   +.. ++.+.+.+.-  
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            35567789999999999886654 5689999999999999999998887777666554332   343 4555555444  


Q ss_pred             --HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 015136          121 --GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       121 --~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                        +..|++.+.. .....++.+..|.+.+    +..+...++|..+++.+++.+.++.||+..|.+.++++++..+....
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence              3455556665 5666778788776554    44555557777777778999999999999999988877776555433


Q ss_pred             c
Q 015136          198 A  198 (412)
Q Consensus       198 ~  198 (412)
                      .
T Consensus       389 ~  389 (402)
T PRK11902        389 M  389 (402)
T ss_pred             H
Confidence            3

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.24  E-value=3.1e-10  Score=105.63  Aligned_cols=144  Identities=16%  Similarity=0.071  Sum_probs=111.6

Q ss_pred             hhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHH
Q 015136           47 IGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-----PNYISLVTLR  120 (412)
Q Consensus        47 ~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~r  120 (412)
                      ..|.+ .+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++..+....     .+.+.+.+..
T Consensus       237 ~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK15402        237 LSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGL  316 (406)
T ss_pred             HhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence            34544 56789999999998888888999999999999999999999999888877777665542     3566677788


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      ++.|++.+.. +....... ..++++||+..+..+....+|..+|+.+.+.+.+..++....+..++..++.
T Consensus       317 ~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        317 SLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            8899988875 44443332 2345899999999999999999999999999988878766555554444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.20  E-value=2.6e-10  Score=102.83  Aligned_cols=159  Identities=11%  Similarity=0.038  Sum_probs=131.5

Q ss_pred             hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015136           44 LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLV  123 (412)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  123 (412)
                      ++.+...+-++-+.+....|.+.+...+.-++...+..++.+|+|.|+.++++..+.++=..+++++++.+.+.+.+.+.
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH  322 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLH  322 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            34444444444455667789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHhccC
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV-LLLYSLAPE  200 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~  200 (412)
                      |+-.+.. ....-|+.+.+|+|..++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.+.. ++..+.+++
T Consensus       323 ~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  323 ALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            9999988 7888999999999988888888 578999999999999999999999999999988777665 444555654


Q ss_pred             Cc
Q 015136          201 SP  202 (412)
Q Consensus       201 ~~  202 (412)
                      ++
T Consensus       403 ~~  404 (412)
T PF01306_consen  403 DK  404 (412)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.20  E-value=3e-10  Score=105.27  Aligned_cols=150  Identities=19%  Similarity=0.101  Sum_probs=115.7

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD-NYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVG  124 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G  124 (412)
                      ...|.+.++.+.++.+.+++.+...++...+..+.+++.| |++.|+.+..+.++.+++..+.+..++.+.+.+..++.|
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4567766676557888899888888777766666666665 567677778888888888877778888887777788888


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---Ch-HHHHHHHHHHHHHHHHHH
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL---NW-RWLLALSSIPSFAVLLLY  195 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~w-~~~~~~~~~~~~~~~~~~  195 (412)
                      ++.+.. +...+++.|..|+++||+++|+.+....+|..+||.+++.+.++.   ++ ...+...++..++..+..
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            888776 777889999999999999999999999999999999999998863   32 445555455555444433

>TIGR00896 CynX cyanate transporter

Probab=99.19  E-value=2.9e-10  Score=103.78  Aligned_cols=134  Identities=13%  Similarity=0.021  Sum_probs=105.8

Q ss_pred             HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015136           42 MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMITSGIGLLSAFSPNYISLVTLR  120 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  120 (412)
                      .......|.+.++.|.+..+.+.+.+...++..++.++.|++.||+ +||+.+..+..+.+++.+...+.++..... ..
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence            3444567777788899999999999999999999999999999999 566677788888888777666655433322 45


Q ss_pred             HHHhhhcCcc-ccceeeeeecc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFV-PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                      ++.|++.+.. +...+.+.+.. ++++++...++.+....+|..++|.+.+.+.++.|
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6789998887 66666555444 45677899999998889999999999999998765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.19  E-value=1.2e-10  Score=107.26  Aligned_cols=150  Identities=19%  Similarity=0.099  Sum_probs=105.6

Q ss_pred             HHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHH-HHH-HHHHHHHHHh
Q 015136           32 LAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR-KKGFL-GIA-MITSGIGLLS  107 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~-~~~-~~~~i~~~~~  107 (412)
                      +..+.............|.+ .+++|.++.+.++..+...++..++.++.|++.||.++ |+... ... ....++....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       223 LGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            33333333334444445544 56689999999999999999999999999999998643 33222 211 1222222222


Q ss_pred             hc--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136          108 AF--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       108 ~~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      ..  ..+.....+..++.|+..... +....+..|..|+++|+++.|+.+....+|..++|.+.+.+.++.||++.|
T Consensus       303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       303 WLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            22  334555556667777655444 555677889999999999999999999999999999999999999998754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.18  E-value=5e-10  Score=102.70  Aligned_cols=166  Identities=15%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             HHHhhHHHhhhhhhhhhhhhcC-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-hh
Q 015136           35 FAEAMEIMILSFIGPAVKSEWG-VSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-PN  112 (412)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~  112 (412)
                      +..+.....+..+.+...++.| .+.+..+.+.++..+.-...-...+++..|+|.|++++++.+..++=..+.+.. ++
T Consensus       217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~  296 (400)
T PF03825_consen  217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444444555556666677777 777788888888888889999999999999999999999999999888888776 55


Q ss_pred             HHHHHH----HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCChH------HH
Q 015136          113 YISLVT----LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFST-FWTLGSIFEAALAWIVMITLNWR------WL  180 (412)
Q Consensus       113 ~~~~~~----~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~w~------~~  180 (412)
                      .+...+    ...+.|+..+.. .....++.+..|++.|+++.+++.. ..++|..+|..++|.+.+++|-+      ..
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            444333    345699999998 8889999999999999999999765 57899999999999999987644      44


Q ss_pred             HHHHHHHHHHHHH-HHHhccC
Q 015136          181 LALSSIPSFAVLL-LYSLAPE  200 (412)
Q Consensus       181 ~~~~~~~~~~~~~-~~~~~~~  200 (412)
                      +.+.+++.++..+ .+++.+|
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            5555554444433 3444444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=3e-10  Score=100.44  Aligned_cols=176  Identities=18%  Similarity=0.209  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG  104 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  104 (412)
                      .+.+++.-..+.++.+ ..+......-.+++|++..+..++....++..++|+++.|+|.||+|.|+++..+.++..+..
T Consensus       254 i~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         254 LVLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             hHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            3344444444455543 333433444456999999999999999999999999999999999999999999999999988


Q ss_pred             HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Q 015136          105 LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLA  182 (412)
Q Consensus       105 ~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~  182 (412)
                      +...+...-..+.+.-.+.|...|.. ...-++.++..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+.
T Consensus       333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            87777777777777888999999998 8888999999999999999999999999999999999999887543 677766


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 015136          183 LSSIPSFAVLLLYSLAPES  201 (412)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~  201 (412)
                      ...++..+.++.+..+|++
T Consensus       413 ~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         413 SIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHhhHhhEEeecCC
Confidence            6666666666666666654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=6.9e-11  Score=111.10  Aligned_cols=174  Identities=17%  Similarity=0.246  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG--RKKGFLGIAMITSGI  103 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~  103 (412)
                      .+....+...+...........+|.+.++.+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.+..+++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            455666777777778888888999999999999999999999999999999999999999988  555777888888888


Q ss_pred             HHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHH
Q 015136          104 GLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLL  181 (412)
Q Consensus       104 ~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~  181 (412)
                      .+.+.+.++++.++..-.+.|++.|.. ......+.|..+.++-..+.|+.....+++.++||++++.+.+..+ |...|
T Consensus       379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f  458 (509)
T KOG2504|consen  379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF  458 (509)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence            889999999999999999999999998 5556788899999999999999999999999999999999888776 99999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 015136          182 ALSSIPSFAVLLLYSLAP  199 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~  199 (412)
                      +..++..++....++..+
T Consensus       459 ~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  459 YFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhcChHHHHHHHHHHHhH
Confidence            999988888777766665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.18  E-value=4.1e-10  Score=118.78  Aligned_cols=142  Identities=18%  Similarity=0.055  Sum_probs=119.9

Q ss_pred             hhhhhhhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015136           47 IGPAVKSEWGVSPS-AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGI  125 (412)
Q Consensus        47 ~~~~~~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~  125 (412)
                      ..+.+.+++|.+.. +.+++.+...++..+++++.|++.||+++|+.+.++.++.+++.++..+..+.+.+++..++.|+
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33455677899998 99999999999999999999999999999999999988888888888888888888888999999


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHH
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-TLNWRWLLALSSIPS  188 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~~~~~~~~~~  188 (412)
                      +.+.. +...+++.+..|+++||+++|+.+....+|.++++.+++.+.. ..++...+++.+.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99887 7777888999999999999999999999999888888776654 245666666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=5.5e-10  Score=98.76  Aligned_cols=163  Identities=18%  Similarity=0.136  Sum_probs=125.4

Q ss_pred             HHHHHHhhHHHhhhhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Q 015136           32 LAVFAEAMEIMILSFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS  110 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  110 (412)
                      +.++......-.++..+| .+.++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++......++++..+....
T Consensus       225 llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence            334444444445555555 5577899999999999999999999999999999999999999999988888888777655


Q ss_pred             -------hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHH
Q 015136          111 -------PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLL  181 (412)
Q Consensus       111 -------~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~  181 (412)
                             .+....++.-+..++..|.. ..+..++...+| ++-|.+.|+..+..++|...-|...+...+..| ++..|
T Consensus       305 ~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f  383 (417)
T COG2223         305 LTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAF  383 (417)
T ss_pred             ccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHH
Confidence                   34444444444455555554 466677777776 588999999999999999999999888888777 88888


Q ss_pred             HHHHHHHHHHHHHH
Q 015136          182 ALSSIPSFAVLLLY  195 (412)
Q Consensus       182 ~~~~~~~~~~~~~~  195 (412)
                      ++.....++..+..
T Consensus       384 ~~~~~~~~~a~v~~  397 (417)
T COG2223         384 MLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877776665543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.17  E-value=1.2e-09  Score=101.03  Aligned_cols=137  Identities=22%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             hhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-----hhHHHHHH
Q 015136           45 SFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-----PNYISLVT  118 (412)
Q Consensus        45 ~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~  118 (412)
                      ....|.+ .+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++....     ++...+..
T Consensus       226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            3344544 45789999999999999999999999999999999999999988888877776655443     23444555


Q ss_pred             HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHH
Q 015136          119 LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       119 ~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      ..++.|++.+.. +.......|..| ++|+++.++.+..... |.+.++. .+.+.+..+|...+..
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence            677788888876 666677778776 6899999998777655 4555554 4444444445444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3.7e-10  Score=99.81  Aligned_cols=169  Identities=21%  Similarity=0.188  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHH-HHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGFL-GIAMITS  101 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~-~~~~~~~  101 (412)
                      .+..++++.+..+..++.+.-..|.+ .|..|.|..+.++..+++-.+...|.+++|+++||+  |||...- +.+++..
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            46677888888888888888777754 667899999999999999999999999999999997  6666544 4444444


Q ss_pred             HHHHHhhcch--hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCCh
Q 015136          102 GIGLLSAFSP--NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNW  177 (412)
Q Consensus       102 i~~~~~~~~~--~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w  177 (412)
                      ++.+..-.++  |+....+.-++.|+..-+. ........|..|++--|++.|+...+..+ |...+....+++.|.+||
T Consensus       333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW  412 (448)
T COG2271         333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGW  412 (448)
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence            4444444444  4577777778888876554 55566778999999999999999999999 888888888999899999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015136          178 RWLLALSSIPSFAVLLL  194 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~  194 (412)
                      ...|.+..+.+++..++
T Consensus       413 ~g~Fi~~~~~a~l~~ll  429 (448)
T COG2271         413 DGGFIVLSIAALLAILL  429 (448)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            99998887666655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.15  E-value=7.9e-10  Score=102.84  Aligned_cols=155  Identities=21%  Similarity=0.198  Sum_probs=118.1

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHhhcc----hhHHH
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG-----RKKGFLGIAMITSGIGLLSAFS----PNYIS  115 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~----~~~~~  115 (412)
                      ....|.+.+++|+++++.....+...+...+ -++.|.++|-+-     ||+-++++.++.+++....+..    .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3456888999999999999988888887766 789999999763     5555666777775555544432    35666


Q ss_pred             HHHHHHHHhhhcCcc-ccceeeeeeccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015136          116 LVTLRGLVGIGIGSG-PVFSAWFLEFVP--AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       116 ~~~~r~l~G~~~g~~-~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~  192 (412)
                      ..+.-++..+|.... .++-+...|...  ++.||...+.......+|.+++..+++.+.+..++|..|.+.+.+..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            666777888888887 677788888763  33478888999999999999999999999999999999998887666665


Q ss_pred             HHHHhccC
Q 015136          193 LLYSLAPE  200 (412)
Q Consensus       193 ~~~~~~~~  200 (412)
                      +..+++.|
T Consensus       169 ~~~~~~~~  176 (433)
T PF03092_consen  169 IVALFLLE  176 (433)
T ss_pred             HHHHHhhh
Confidence            44444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.12  E-value=2.1e-09  Score=99.41  Aligned_cols=141  Identities=14%  Similarity=0.029  Sum_probs=109.4

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcC
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIG  128 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g  128 (412)
                      +.+.+.+|.++.+.|++.+...++..++++..+++.||.++|+.+..+. +.++...+..+.++.+...+..++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            3455678999999999999999999999999999999999999888775 344444455566677777777888999988


Q ss_pred             cc-ccceeeeeecccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          129 SG-PVFSAWFLEFVPAAK-RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       129 ~~-~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      .. +...+.+.|..|+++ +|++.++.+...++|..++..+.+.+ +..|-|..+.+.++..++.
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  372 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVA  372 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHH
Confidence            86 666666777766554 79999999999999999999988855 5567666665554433333

>PRK09848 glucuronide transporter; Provisional

Probab=99.12  E-value=3.7e-09  Score=99.74  Aligned_cols=135  Identities=16%  Similarity=0.093  Sum_probs=103.5

Q ss_pred             hhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch--hHHHHHHH
Q 015136           43 ILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP--NYISLVTL  119 (412)
Q Consensus        43 ~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~  119 (412)
                      ......|.+ .+.+|.++...++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++.
T Consensus       246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  325 (448)
T PRK09848        246 AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA  325 (448)
T ss_pred             HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            333445544 344676665555545555677888999999999999999999999998888877666543  56777777


Q ss_pred             HHHHhhhcCcc-ccceeeeeeccccc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPAA-------KRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      .++.|+|.+.. +...+..+|..|.+       ++|...|..+....+|..+++.+.+.+.+..|+
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899998887 77777877877643       459999999999999999999999988765554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.11  E-value=2.5e-09  Score=97.61  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=108.4

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch---hHHHH-HHHHHHHHHHHh
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRK---KGFLG-IAMITSGIGLLS  107 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr---~~~~~-~~~~~~i~~~~~  107 (412)
                      +..++.......+....|.+.++.|.+.+ .+...++..+...++   .++++||.+||   +.... ..++.++.....
T Consensus       199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~  274 (368)
T TIGR00903       199 AILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLAL  274 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444455556678888888888764 565555555555544   47777777643   33332 333344444444


Q ss_pred             hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015136          108 AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI  186 (412)
Q Consensus       108 ~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~  186 (412)
                      ....+.....+.-.+.|++.... +...++.+|.+|++.|++++|+.+....+|..++|.+.+.+..  +-+..|.+.++
T Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~  352 (368)
T TIGR00903       275 AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAI  352 (368)
T ss_pred             HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence            44445444455556677766665 6677889999999999999999999999999999999887763  67777877777


Q ss_pred             HHHHHHHHHHhccC
Q 015136          187 PSFAVLLLYSLAPE  200 (412)
Q Consensus       187 ~~~~~~~~~~~~~~  200 (412)
                      +.++..+....+++
T Consensus       353 ~~~i~~~~~~~~~~  366 (368)
T TIGR00903       353 LITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHhCCC
Confidence            66666554444444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.11  E-value=8.8e-08  Score=92.90  Aligned_cols=152  Identities=15%  Similarity=0.150  Sum_probs=123.1

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHhhcchh--------HHH
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGIGLLSAFSPN--------YIS  115 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~  115 (412)
                      ..+..++.+.+|.+.+....+...+....-+...++|.++|+ +||++.+.++.++..++.++.+++..        ...
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            344456666789999999889999998899999999999995 79999999999999999887765421        233


Q ss_pred             HHHHHHHHhhhcCcc-ccceeeeeeccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHH
Q 015136          116 LVTLRGLVGIGIGSG-PVFSAWFLEFVPAA---KRGMWMVIFSTFWTLGSIFEAALAWIVMITL-------NWRWLLALS  184 (412)
Q Consensus       116 ~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~w~~~~~~~  184 (412)
                      .+++-.+..+|.|.. +...+...|.++++   +|-....++..+.++|+++++.+.+++.+..       +|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            567778888899998 99999999988754   3677888899999999999999999987443       699999999


Q ss_pred             HHHHHHHHHHHH
Q 015136          185 SIPSFAVLLLYS  196 (412)
Q Consensus       185 ~~~~~~~~~~~~  196 (412)
                      ++..++.++...
T Consensus       168 ~i~m~ia~lvf~  179 (654)
T TIGR00926       168 AILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            887777655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.10  E-value=7e-10  Score=105.88  Aligned_cols=133  Identities=14%  Similarity=0.073  Sum_probs=110.6

Q ss_pred             Hhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc----chhHHHH
Q 015136           42 MILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF----SPNYISL  116 (412)
Q Consensus        42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~  116 (412)
                      .......|.+. +.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+    ..+.+.+
T Consensus       272 ~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  351 (485)
T TIGR00711       272 YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAI  351 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence            33344556554 457999999999999999999999999999999999999999999888888876652    2356667


Q ss_pred             HHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136          117 VTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT  174 (412)
Q Consensus       117 ~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  174 (412)
                      ....++.|++.+.. +.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788899998886 55566666788999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.10  E-value=2.1e-09  Score=99.57  Aligned_cols=134  Identities=13%  Similarity=0.079  Sum_probs=92.6

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCc
Q 015136           50 AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~  129 (412)
                      .+.+++|.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.++..+.++.+.....-.+.+.|.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999998888888777766555444444444443333


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      . +..  ...+..|.++|+   +......+++..+++.+++.+.+..|+.......+.+.
T Consensus       309 ~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        309 GFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            2 221  122334544443   33344456677777888888887778766555544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=8e-10  Score=92.10  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=112.6

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHhhhc
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG-LLSAFSPNYISLVTLRGLVGIGI  127 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~r~l~G~~~  127 (412)
                      ..+++.||+|+...+.+.+....-.++.+++.|.++||+|++-..+.+..+..+.. ....+  +.+.=..+..+.|+..
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhH
Confidence            46789999999999999999999999999999999999999987776655554433 22222  3334455677888888


Q ss_pred             Ccc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---hHHHHHHH-HHHHHHHHHHHHhc
Q 015136          128 GSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN---WRWLLALS-SIPSFAVLLLYSLA  198 (412)
Q Consensus       128 g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---w~~~~~~~-~~~~~~~~~~~~~~  198 (412)
                      ... ......++...|+++.|++.|..+...++|-++.|++++++.++-|   |--+|.+. +.+++....+.+.+
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            777 5567888889999999999999999999999999999999998655   44444443 34444444344333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.09  E-value=4.4e-09  Score=98.55  Aligned_cols=145  Identities=21%  Similarity=0.291  Sum_probs=119.0

Q ss_pred             HHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch-
Q 015136           33 AVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP-  111 (412)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-  111 (412)
                      ..+.............+.+.++.--++...+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ 
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            3444444555555556666666433446788888999999999999999999999999999999999999999888776 


Q ss_pred             -hHHHHHHHHHHHhhhcCcc-ccceeeeeecccc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          112 -NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPA-------AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       112 -~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                       |.+.+++..++.|++.+.. ....++++|..+.       ++.|...|..+....+|..+++.+.+.+.+..|+
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence             8999999999999999998 7788999988763       3458889999999999999999999988775553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.08  E-value=7e-09  Score=98.38  Aligned_cols=138  Identities=14%  Similarity=0.029  Sum_probs=104.1

Q ss_pred             HHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc-----chhHH
Q 015136           40 EIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF-----SPNYI  114 (412)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~  114 (412)
                      .........+.+.+...-+.+..+++.+...++..++.+++++++||+|+|+.+.++..+.+++.+....     .++.+
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL  325 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence            3344444555565555445667777778777899999999999999999999999888877666554422     34566


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVP-------AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      .+++.-++.|++.+.. +...++++|..+       .++.|...+.......+|..+++.+.+.+.+..|+
T Consensus       326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6777778888888887 777788888855       33456688999999999999999999998876554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=8.2e-09  Score=95.45  Aligned_cols=162  Identities=11%  Similarity=-0.039  Sum_probs=104.6

Q ss_pred             HHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-cc---
Q 015136           35 FAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA-FS---  110 (412)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~---  110 (412)
                      ++.+.....++...|.+.++ +.+.........+..+...+..+++|+++||+|+|+++.++.+...++..... ..   
T Consensus       262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333334455555555444 23333333334455677888899999999999999999988887777664321 11   


Q ss_pred             --hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccc---------------------cchhhHHHHHHHHHHHHHHHHHH
Q 015136          111 --PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPA---------------------AKRGMWMVIFSTFWTLGSIFEAA  166 (412)
Q Consensus       111 --~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~  166 (412)
                        .+++.+.+..+...++.|.. ..+..++.+.+|+                     ++-|.+.|+..+...+|..+.|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence              24555555555544555554 4555666666663                     25678889999999999999998


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHHHH-HHHHh
Q 015136          167 LAWIVMIT-LNWRWLLALSSIPSFAVL-LLYSL  197 (412)
Q Consensus       167 ~~~~l~~~-~~w~~~~~~~~~~~~~~~-~~~~~  197 (412)
                      +.+...+. .++...|+...+..++.. +.++.
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            77776654 458888887776666554 34444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.07  E-value=1.9e-09  Score=113.55  Aligned_cols=143  Identities=15%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             hhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc---------------
Q 015136           47 IGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS---------------  110 (412)
Q Consensus        47 ~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------------  110 (412)
                      ..|.+ .+.+|.++.+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+...+.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            44554 45589999999999999999999999999999998888777666666665555433332               


Q ss_pred             -----hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHH
Q 015136          111 -----PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI-TLNWRWLLAL  183 (412)
Q Consensus       111 -----~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~w~~~~~~  183 (412)
                           ++.+.+.+..++.|++.+.. +...+++.+..|++.||+++|+.+....+|..+++++.+.+.+ ..++...+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~  406 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF  406 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence                 67777888889999998887 7788999999999999999999999999999999999998874 4567777665


Q ss_pred             HHHHHH
Q 015136          184 SSIPSF  189 (412)
Q Consensus       184 ~~~~~~  189 (412)
                      .++..+
T Consensus       407 ~~~~~~  412 (1140)
T PRK06814        407 IALANL  412 (1140)
T ss_pred             HHHHHH
Confidence            554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=1.5e-09  Score=103.49  Aligned_cols=129  Identities=16%  Similarity=0.113  Sum_probs=109.0

Q ss_pred             hhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc---chhHHHHHHHH
Q 015136           45 SFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF---SPNYISLVTLR  120 (412)
Q Consensus        45 ~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~r  120 (412)
                      ....| .+++.+|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++.+++.++...   .++.+...+..
T Consensus       279 ~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        279 ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            34444 455668999999999999999999999999999999999999999898888877765433   24556667778


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      ++.|+|.|.. +.....+.+..|+++++.+.++.+...++|..+|+.+.+.+.+
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999987 6677777788999999999999999999999999999998854

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.06  E-value=4.8e-09  Score=99.52  Aligned_cols=171  Identities=15%  Similarity=0.098  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhh-hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH--------HHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAV-KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGF--------LGIA   97 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~--------~~~~   97 (412)
                      +....+..+........+....|.+ .+++|.+..+.++..++..++..++.++.|+++||+++|+..        ..+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  342 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI  342 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            3444455555555555555666655 466899999999999999999999999999999998755321        1111


Q ss_pred             HHH--HHHHHHhhc-chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136           98 MIT--SGIGLLSAF-SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus        98 ~~~--~i~~~~~~~-~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      ...  ++....... ..+....++.-.+.+.+.+.. +.......|..| +.+|.+.++.+....+|..++|.+.+.+.+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            111  111111122 234444444455555555544 333344456665 589999999999999999999999998876


Q ss_pred             cC---ChHHHHHHHHHHHHHHHHHHHhc
Q 015136          174 TL---NWRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       174 ~~---~w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      ..   +|+..|.+.++..++..+...+.
T Consensus       422 ~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       422 QDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            43   38888888887777665554443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.05  E-value=9.7e-10  Score=100.42  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             hHHHhhhhhhhhhhhhcCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc-------
Q 015136           39 MEIMILSFIGPAVKSEWGVSPSAESLLSTVVF-AGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS-------  110 (412)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------  110 (412)
                      ..........|.+.+++|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+.       
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33344445566666669999999998887665 6788999999999999999999998888887776654432       


Q ss_pred             ----hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHH
Q 015136          111 ----PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWT  158 (412)
Q Consensus       111 ----~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~  158 (412)
                          ++.+.+....++.+++.+.. +...+++.|.+|+++||+.+|+.++..+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                34567777888999999987 8889999999999999999999887654

>PRK10133 L-fucose transporter; Provisional

Probab=99.05  E-value=3.5e-09  Score=99.22  Aligned_cols=137  Identities=11%  Similarity=0.033  Sum_probs=109.4

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-
Q 015136           52 KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-  130 (412)
Q Consensus        52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-  130 (412)
                      .+.+|.++.+.++..+.+.++..++.++.+++.||+|+|+++..+..+.+++..+..+.++.. .+..-.+.|++.+.. 
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999988887777666655555543 245567889999998 


Q ss_pred             ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 015136          131 PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALSSIPSFAV  191 (412)
Q Consensus       131 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~  191 (412)
                      |...+...|..|+ +.+.+.++... ..+|..++|.+.+.+.+..| -|..|++..+..+..
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            8888888888764 46777887764 44688889999999999887 788887655544443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=1.2e-08  Score=94.06  Aligned_cols=119  Identities=16%  Similarity=0.042  Sum_probs=83.0

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh---c-chhHHHHHHHHHHHhh
Q 015136           50 AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA---F-SPNYISLVTLRGLVGI  125 (412)
Q Consensus        50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~r~l~G~  125 (412)
                      .+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+...   . ..+.+...+...+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45566899999999999999999999999999999999999999888876554433222   1 2244444444444444


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHHHHH-HHHHHHHHHHHHH
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTF-WTLGSIFEAALAW  169 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~  169 (412)
                      +.+.. ......+.|..| ++++++.++.+.. ..+|..+++.++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44443 444455667666 7899999886543 4566666666544

>PRK11043 putative transporter; Provisional

Probab=99.01  E-value=9.5e-09  Score=95.51  Aligned_cols=134  Identities=16%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh---hc--chhHHHHHHH
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS---AF--SPNYISLVTL  119 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~--~~~~~~~~~~  119 (412)
                      ....|.+.+++|.++.+.++......++..++.+..+++.||+|+|+....+....+++.+..   ..  .++.+..++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            344677778899999999998888889999999999999999999987766655554443322   11  3455555566


Q ss_pred             HHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRW  179 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  179 (412)
                      ..+.|++.+.. +.......|..| ++||++.++.+.....+...++.+.+.+.+......
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            67778887776 666666666665 689999999998888888888888888876443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.00  E-value=2.6e-09  Score=97.34  Aligned_cols=126  Identities=28%  Similarity=0.389  Sum_probs=106.9

Q ss_pred             HHHhhhhhhhhh-hhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch---hHH
Q 015136           40 EIMILSFIGPAV-KSEWGVS-PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP---NYI  114 (412)
Q Consensus        40 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~---~~~  114 (412)
                      .........|.+ .+++|.+ ..+.+...+...++..++.++.|++.||+|+|+..........++.+......   +..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344466666765 8889999 78999999999999999999999999999998888887777777776665543   456


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEA  165 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  165 (412)
                      ..++..++.|++.+.. +...+++.|..|+++||++.|+.+...++|..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6777888899988887 88889999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.00  E-value=7.6e-09  Score=97.45  Aligned_cols=130  Identities=15%  Similarity=0.092  Sum_probs=96.3

Q ss_pred             hhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-c-chhHHHHHHHHHHHhh
Q 015136           48 GPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA-F-SPNYISLVTLRGLVGI  125 (412)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~-~~~~~~~~~~r~l~G~  125 (412)
                      .+.+.++.--+++..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+... . .++.+.+++..++.|+
T Consensus       252 ~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~  331 (444)
T PRK09669        252 TLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNF  331 (444)
T ss_pred             hheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            3444333322334445566667788888999999999999999999988876665443222 2 3567777888889999


Q ss_pred             hcCcc-ccceeeeeeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          126 GIGSG-PVFSAWFLEFVP-------AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      +.+.. +...++++|..+       .++.|...+.......+|..+|+.+++.+.+..|+
T Consensus       332 ~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        332 IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99987 777888888775       23346778899999999999999999998886665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.97  E-value=1.4e-08  Score=87.96  Aligned_cols=132  Identities=16%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchh
Q 015136           69 VFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRG  147 (412)
Q Consensus        69 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~  147 (412)
                      ..+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-..+.+..+..-+..... .+.+.|..|.+|.+.|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            34556678899999999999999999999999999987766654333333333333333333 68889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccCCc
Q 015136          148 MWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESP  202 (412)
Q Consensus       148 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  202 (412)
                      .+.|.......+|+++.|+++  +.....-..+..+.+.+.++..++..++|-.+
T Consensus       470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            999999999999999999999  33323334455566666666666666776443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.94  E-value=2.2e-08  Score=89.22  Aligned_cols=154  Identities=29%  Similarity=0.380  Sum_probs=124.1

Q ss_pred             HHhhHHHhhhhhhhhhhhhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchh-
Q 015136           36 AEAMEIMILSFIGPAVKSEWGVSP--SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPN-  112 (412)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-  112 (412)
                      ....+........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+...+..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          13 LLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            333555666677888888887766  48899999999999999999999999999998888888766666666666665 


Q ss_pred             -HHHHHHHHHHHhhhcCcc-ccceeeeeecccc-cchhhHHHHHHH-HHHHHHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 015136          113 -YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPA-AKRGMWMVIFST-FWTLGSIFEAALAWIVMIT--LNWRWLLALSSI  186 (412)
Q Consensus       113 -~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~--~~w~~~~~~~~~  186 (412)
                       .+.+.+.|++.|++.+.. +...+++.|..|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.....
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAAL  172 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence             889999999999999877 8888999999987 688999998888 6888888988777776654  679986665554


Q ss_pred             HHH
Q 015136          187 PSF  189 (412)
Q Consensus       187 ~~~  189 (412)
                      ...
T Consensus       173 ~~~  175 (338)
T COG0477         173 LGL  175 (338)
T ss_pred             HHH
Confidence            443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.86  E-value=8.6e-08  Score=90.75  Aligned_cols=133  Identities=13%  Similarity=0.071  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhHH--HHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHhh
Q 015136           62 ESLLSTVVFAGNLVGVYLWGLLSDNYGR-----KKGF--LGIAMITSGIGLLSAF---------SPNYISLVTLRGLVGI  125 (412)
Q Consensus        62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-----r~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~~r~l~G~  125 (412)
                      .+++.++..+...+.+++..++-.|.+|     +...  .+|.++.+++....++         ..|++.++...++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888886654444443     3333  7788888888776653         4689999999999999


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      |.... |...+++.+..|++.||+.+|++.....+|..+++.+.....+..+|...|...++..++..+.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVV  463 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence            99998 9999999999999999999999999999999999999888777778988888877766655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.84  E-value=2.3e-08  Score=68.24  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             HhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHH
Q 015136           37 EAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISL  116 (412)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  116 (412)
                      .+.++..+++.+|.+++|.++|.++.|++.+..++||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46788899999999999999999999999999999999999999999999888999999999999999999998887765


Q ss_pred             H
Q 015136          117 V  117 (412)
Q Consensus       117 ~  117 (412)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=5.3e-07  Score=82.60  Aligned_cols=143  Identities=22%  Similarity=0.237  Sum_probs=109.9

Q ss_pred             HHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch-
Q 015136           34 VFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP-  111 (412)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-  111 (412)
                      .++......+.+....++.+. +|.+..+..+.......+..++.+++.++++|+|+|+++.++.++.+++.++..+.+ 
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~  324 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA  324 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence            333333444444444444333 455666667778888888888899999999999999999999999999998887765 


Q ss_pred             -hHHHHHHHHHHHhhhcCcc-ccceeeeeeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015136          112 -NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVP-------AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN  176 (412)
Q Consensus       112 -~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (412)
                       +.+..++..++.++|.+.. +...++++|..+       .++-|...+......-+|.+++..+.+++.+..|
T Consensus       325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             7888888899999999998 777788887643       2334777788888888999999988888876555

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.83  E-value=1.1e-07  Score=88.21  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH-HHHHHhhc--chhHHHHHHHHHHHhhh
Q 015136           50 AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS-GIGLLSAF--SPNYISLVTLRGLVGIG  126 (412)
Q Consensus        50 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~-i~~~~~~~--~~~~~~~~~~r~l~G~~  126 (412)
                      .+.+.+|.++.+.++......++..+++++.+++.||++++........... +.......  ..+.+.+.+..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3344489999999999999999999999999999999984433322222222 11111111  23556677778889999


Q ss_pred             cCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 015136          127 IGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWR  178 (412)
Q Consensus       127 ~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  178 (412)
                      .+.. +...++..|..| +++|.+.++.+....+|..+++.+++.+.+...+.
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            8887 778888888876 67899999999999999999999988876553333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.83  E-value=7.4e-08  Score=89.46  Aligned_cols=140  Identities=10%  Similarity=-0.011  Sum_probs=101.8

Q ss_pred             hhhhhhhhhhc--CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015136           45 SFIGPAVKSEW--GVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL  122 (412)
Q Consensus        45 ~~~~~~~~~~~--~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  122 (412)
                      ....+.+.++.  +.+....+...+.+..+..+|.++.+++.||+++|+++.+...+.++..++....++... ...-++
T Consensus       252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~  330 (410)
T TIGR00885       252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL  330 (410)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            34455554544  334444455667777888999999999999999999999998888888888877766544 455666


Q ss_pred             HhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHH
Q 015136          123 VGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL------NWRWLLALSSIP  187 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~w~~~~~~~~~~  187 (412)
                      .|++.+.. |...+...+..+++.+..+.++...  .+|.+++|++.+.+.|..      +.+..|++..+.
T Consensus       331 ~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       331 CSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            77777776 8888888888876654334444333  399999999999999953      477777765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.82  E-value=3.3e-07  Score=87.93  Aligned_cols=178  Identities=16%  Similarity=0.092  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI  103 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~  103 (412)
                      ......+.+..+.+..+.+....+.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.++
T Consensus       294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            33444555555666666677778889999998887554 55566677777788888899999999999999999999999


Q ss_pred             HHHhhcchh--------------HHHHHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015136          104 GLLSAFSPN--------------YISLVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAW  169 (412)
Q Consensus       104 ~~~~~~~~~--------------~~~~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  169 (412)
                      .++.+....              .......-++..+..+..++...+.+|.+|.+.|+++.++......+...+-.....
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~  452 (513)
T KOG0254|consen  373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP  452 (513)
T ss_pred             HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            987764321              111223334445555555777788999999999999999988777776665555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHHH-H-HHHHhccCCc
Q 015136          170 IVMITLNWRWLLALSSIPSFAV-L-LLYSLAPESP  202 (412)
Q Consensus       170 ~l~~~~~w~~~~~~~~~~~~~~-~-~~~~~~~~~~  202 (412)
                      .+.+..++...|...+....+. . ...+++||+.
T Consensus       453 ~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk  487 (513)
T KOG0254|consen  453 FITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK  487 (513)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence            5555444445555554444433 4 4677789984

>TIGR00788 fbt folate/biopterin transporter

Probab=98.81  E-value=3.2e-08  Score=93.41  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=118.5

Q ss_pred             hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc----------hhHHHHHHHHHH
Q 015136           53 SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS----------PNYISLVTLRGL  122 (412)
Q Consensus        53 ~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~r~l  122 (412)
                      +.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.......          ++.+.+...-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            5689999999999999999999999999999999999999999999999887554211          333345556778


Q ss_pred             HhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHH---HHHHHHHH
Q 015136          123 VGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-----WRWLLALSS---IPSFAVLL  193 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-----w~~~~~~~~---~~~~~~~~  193 (412)
                      .+++.+.. .....++.+..|++++|+..++..+..++|..+++.+++.+.++.|     ++..+....   +..++.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            88888887 7778999999999999999999999999999999999999988776     544443332   33333344


Q ss_pred             HHHhccC
Q 015136          194 LYSLAPE  200 (412)
Q Consensus       194 ~~~~~~~  200 (412)
                      ...++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            4456775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=6.1e-06  Score=75.78  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeeccccc
Q 015136           66 STVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAA  144 (412)
Q Consensus        66 ~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~  144 (412)
                      .++-+..+.+++++++.+.|+.|.|..+.++......-.+..-+ .|-+.+++...+.|+|.+.. ..-..+++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            77888899999999999999999999999999988877665544 56777888999999999998 67779999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          145 KRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       145 ~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      .+.+-.++.-+....+.++|..+...
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            99999999888888888877655444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.80  E-value=1.1e-07  Score=90.68  Aligned_cols=130  Identities=14%  Similarity=0.063  Sum_probs=98.8

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHhhhcchhHHHHHHHHHHHHHHHhhcchh---------HHHHHHHHHHHhhhcC
Q 015136           62 ESLLSTVVFAGNLVGVYLW----GLLSDNYGRKKGFLGIAMITSGIGLLSAFSPN---------YISLVTLRGLVGIGIG  128 (412)
Q Consensus        62 ~~~~~s~~~~~~~i~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~r~l~G~~~g  128 (412)
                      .+++.++..+...+..++.    +++.||++.++.+.+|.++.+++.+..+...+         .+.++...++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777777777776666    55566666667889999999999888766554         4678889999999999


Q ss_pred             cc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHH
Q 015136          129 SG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI----------TLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       129 ~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~  191 (412)
                      .. |...+++.+..|++.||+++|.+.....+|..++..+......          ..+.+..|...++..++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  471 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI  471 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            98 9999999999999999999999888877777777666643211          123667777777665544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.3e-08  Score=90.82  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhcchhHHHH-HHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD----NYGRKKGFLG-IAMI   99 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d----r~Grr~~~~~-~~~~   99 (412)
                      +.++.++...+...+++..--.+.+++..+.|++....+.+=-...+...+.+|+.|..+|    ||||||.++. +.+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            3333444444445555555556778888999999988888777777888889999999999    5898887664 5555


Q ss_pred             HHHHHHHhhcchhH-----------------HHHHHHHHHHhhhcCcc-ccceeeeeecccccchhh-HHHHHHHHHHHH
Q 015136          100 TSGIGLLSAFSPNY-----------------ISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGM-WMVIFSTFWTLG  160 (412)
Q Consensus       100 ~~i~~~~~~~~~~~-----------------~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g  160 (412)
                      .+++.++..++.++                 ..++++-.+.=++.... ..+-+++.|...++++.+ +.+.+.....+|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            66666666665432                 23444455555555566 677789999987777666 999999999999


Q ss_pred             HHHHHHHHHHH
Q 015136          161 SIFEAALAWIV  171 (412)
Q Consensus       161 ~~~~~~~~~~l  171 (412)
                      ..+|..+++++
T Consensus       192 nvLGY~~g~y~  202 (498)
T KOG0637|consen  192 NVLGYALGSYL  202 (498)
T ss_pred             ceeeeeccccc
Confidence            99988888743

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.78  E-value=1.6e-05  Score=73.06  Aligned_cols=302  Identities=16%  Similarity=0.084  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhhhhhhcCC-CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           29 YAGLAVFAEAMEIMILSFIGPAVKSEWGV-SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      .+....+....+.-++....+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+.
T Consensus         6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s   85 (432)
T PF06963_consen    6 RLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAAS   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHH
Confidence            34556666777777777777777666632 22223344444556677888999999999999998877765554333222


Q ss_pred             hc------c--h-----h--HHHHHHHHHHHhhhcCccccc--eeeeeec----c--cccchhhHHHHHHHHHHHHHHHH
Q 015136          108 AF------S--P-----N--YISLVTLRGLVGIGIGSGPVF--SAWFLEF----V--PAAKRGMWMVIFSTFWTLGSIFE  164 (412)
Q Consensus       108 ~~------~--~-----~--~~~~~~~r~l~G~~~g~~~~~--~~~i~~~----~--~~~~r~~~~~~~~~~~~~g~~~~  164 (412)
                      +.      .  .     +  ...+++.-.+.|.-.-.....  .+.=.||    .  +++.+.+..+...-.--+..+++
T Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla  165 (432)
T PF06963_consen   86 CALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA  165 (432)
T ss_pred             HHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            11      0  1     1  111222222222221111111  2222344    2  34556677777777777889999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHhc----cCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccC
Q 015136          165 AALAWIVMITLNWRWLLALSSIPSFAVLLL-YSLA----PESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDAT  239 (412)
Q Consensus       165 ~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (412)
                      |++.+.+.+..+.+....+.+...++..+. ++++    ...|. +..+++.++.                        +
T Consensus       166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~------------------------~  220 (432)
T PF06963_consen  166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSES------------------------E  220 (432)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccc------------------------c
Confidence            999999999889888777777666665443 2222    11221 1001100000                        0


Q ss_pred             CCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q 015136          240 SRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTL  319 (412)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (412)
                      .+.+++ +..+........+.-.+..+.....|+..++.+.+...+...+.++. .+++   ......|..         
T Consensus       221 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf---~~lmt~yl~---------  286 (432)
T PF06963_consen  221 SSSDEE-SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSF---GGLMTAYLK---------  286 (432)
T ss_pred             cccccc-ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcC---cHHHHHHHH---------
Confidence            000000 00000000000010011112223355555665555544444444443 2222   222333332         


Q ss_pred             ccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 015136          320 TVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFIC  371 (412)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~  371 (412)
                        ..|+++...+..-....+.++.|.++..++.+|+|..+.-+.+.....++
T Consensus       287 --~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  287 --SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVC  336 (432)
T ss_pred             --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence              24799999999999999999999999999999999877777666644433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.78  E-value=3e-08  Score=88.57  Aligned_cols=179  Identities=19%  Similarity=0.062  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHH----HHH-----HHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 015136           25 LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESL----LST-----VVFAGNLVGVYLWGLLSDNYGRKKGFLG   95 (412)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~----~~s-----~~~~~~~i~~~~~g~l~dr~Grr~~~~~   95 (412)
                      +.++..+..+|..-...+..+.....+.++.|+.+.+...    -.+     +-..++..|-.+...+.|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5677778888888788888888889999988886655443    111     1222333355667789999999999999


Q ss_pred             HHHHHHHHHHHhhcchh----HHHHHHHHHHHhhhcCcc--ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015136           96 IAMITSGIGLLSAFSPN----YISLVTLRGLVGIGIGSG--PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAW  169 (412)
Q Consensus        96 ~~~~~~i~~~~~~~~~~----~~~~~~~r~l~G~~~g~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  169 (412)
                      |.+++++..+..+...|    -..+++...+..+.....  .....+-+|.+|.+.|+.+-|+..+..-.|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999988877655    222333333333333332  455577789999999999999999999999999999999


Q ss_pred             HHHh-----cCChHHHHHHHHHHHHHHHHHHHhccCCch
Q 015136          170 IVMI-----TLNWRWLLALSSIPSFAVLLLYSLAPESPR  203 (412)
Q Consensus       170 ~l~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (412)
                      ++.+     ..+.|+.+++.+.+..+..+.-+++||+.+
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            9998     788999999999999888888888898754

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.77  E-value=3.8e-07  Score=79.40  Aligned_cols=158  Identities=16%  Similarity=0.141  Sum_probs=123.3

Q ss_pred             HHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHhhcchhHH
Q 015136           36 AEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMITSGIGLLSAFSPNYI  114 (412)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~  114 (412)
                      .+.+..++.-..+|.+..|.|+|..+.|++.+...+.....++....+.+|. .+|+..+....++.++.+.+.+.+...
T Consensus       219 lqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~  298 (395)
T COG2807         219 LQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL  298 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3444456666788999999999999999999999999999999999999965 466677777777777777776665443


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL-NWRWLLALSSIPSFAV  191 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w~~~~~~~~~~~~~~  191 (412)
                      .+.- -++.|+|.|.. +.....+.+... +++-++-.++.+....+=..+||.+.|++.|.. +|+..++......+..
T Consensus       299 ~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m  377 (395)
T COG2807         299 PILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLM  377 (395)
T ss_pred             HHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHH
Confidence            3333 48999999988 888888887765 445566667778877777889999999999854 5998888777666655


Q ss_pred             HHH
Q 015136          192 LLL  194 (412)
Q Consensus       192 ~~~  194 (412)
                      .+.
T Consensus       378 ~i~  380 (395)
T COG2807         378 LIF  380 (395)
T ss_pred             HHH
Confidence            444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.76  E-value=3.5e-06  Score=78.31  Aligned_cols=144  Identities=15%  Similarity=0.062  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCC-----CcchhHHHHHHHHHHHHHH-HHHHHHHHhhhcchhHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKSEWGV-----SPSAESLLSTVVFAGNLVG-VYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      .++...+..++..++.+    .+-++.|.+.+     +.+.+.++-+...+...+. .++.+++++|++|++++-+....
T Consensus         8 k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            34444444555444443    34566677655     3357888888887777776 89999999999999988877666


Q ss_pred             HHHHHHHhhcc-----h--------------------------hHHHHHHHHHHHhhhcCcc-c-cceeeeeecccccch
Q 015136          100 TSGIGLLSAFS-----P--------------------------NYISLVTLRGLVGIGIGSG-P-VFSAWFLEFVPAAKR  146 (412)
Q Consensus       100 ~~i~~~~~~~~-----~--------------------------~~~~~~~~r~l~G~~~g~~-~-~~~~~i~~~~~~~~r  146 (412)
                      +.....+.++.     +                          +.|...+..+...+-.... . .-..+++|.+..++-
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qa  163 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEA  163 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            66665554432     1                          1223333333333333333 3 556889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          147 GMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       147 ~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      .|-.+++..+.++|.++++.+..++.+
T Consensus       164 kRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       164 KRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888873

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11462 putative transporter; Provisional

Probab=98.74  E-value=3.9e-07  Score=85.99  Aligned_cols=130  Identities=18%  Similarity=0.085  Sum_probs=85.0

Q ss_pred             hhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhh
Q 015136           48 GPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSP--NYISLVTLRGLVGI  125 (412)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~  125 (412)
                      ...+.+...-++...+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|+
T Consensus       251 ~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  330 (460)
T PRK11462        251 MMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGV  330 (460)
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence            3333333333344556677788889999999999999999999988766554444333333322  23334445566777


Q ss_pred             hcCcc-ccceeeeeeccc-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 015136          126 GIGSG-PVFSAWFLEFVP-------AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNW  177 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w  177 (412)
                      +.+.. +...++++|..+       .++.|...+.......+|..+++.+++.+.+..|+
T Consensus       331 ~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        331 LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            76665 444556665544       23335556777788999999999999988765454

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.71  E-value=1.6e-06  Score=77.34  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=121.7

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHh
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD-NYGRKKGFLGIAMITSGIGLLS---AFSPNYISLVTLRGLVG  124 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~G  124 (412)
                      |+=.+-||++..+...+++.+..|..++....|++.. |.++|+.-.+|+...+++..+.   +..++.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            4556779999999999999999999999999998887 7888888888888888887654   44567889999999999


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHH
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT----------LNWRWLLALSSIPSFAVLL  193 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------~~w~~~~~~~~~~~~~~~~  193 (412)
                      ++.|.. ....+.+.+...+++.|..+|.+.....++..++..+++.+.|.          .+|-.+|.+.++..++.++
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            999998 66678888999999999999999999999999999999987652          2466677777666555544


Q ss_pred             HH
Q 015136          194 LY  195 (412)
Q Consensus       194 ~~  195 (412)
                      +.
T Consensus       393 ll  394 (403)
T PF03209_consen  393 LL  394 (403)
T ss_pred             HH
Confidence            43

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.67  E-value=4.2e-08  Score=89.35  Aligned_cols=152  Identities=14%  Similarity=0.089  Sum_probs=133.6

Q ss_pred             hhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015136           46 FIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGI  125 (412)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~  125 (412)
                      ..+=.-.||++-.+..-|........|-.+.-++.+++.+|+|+-+++..++....+=.+..+..+|.|+.+...+++|+
T Consensus       392 tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgi  471 (618)
T KOG3762|consen  392 TFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGI  471 (618)
T ss_pred             HHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHH
Confidence            33334467788788888888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIF-STFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      ..+.. ..+.+|++...||+.|..+.++. ....++|-.+|.++++.+.+.+|-|..|.+.++.+++.++....
T Consensus       472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            99998 88899999999999999999985 46678999999999999999999999999988877766554433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.65  E-value=3.2e-05  Score=69.95  Aligned_cols=130  Identities=16%  Similarity=0.039  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecc
Q 015136           63 SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFV  141 (412)
Q Consensus        63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~  141 (412)
                      +.+.-+-.+-..+.-+.+.+..+|+..+.=..+..+++.++.++.+++++.+.-+++-++.+++.|.. .....+ ...+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            33444455566677778888999988665566777788889999999999999899999999998886 544444 3455


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHhc
Q 015136          142 PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN--WRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      ++    ..++-+..+.+.++++|+..-..+.+ .+  -|..+.+..++.++..+.++++
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            53    35788888999999999887776666 55  4777777766555454444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.65  E-value=1.2e-07  Score=86.97  Aligned_cols=115  Identities=17%  Similarity=0.078  Sum_probs=84.4

Q ss_pred             hhhhh-hhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc--ch--hHHHHHHH
Q 015136           45 SFIGP-AVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF--SP--NYISLVTL  119 (412)
Q Consensus        45 ~~~~~-~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~~  119 (412)
                      ....| .+.+.+|.++.+.++..+...+...++.++.|+++||+|||+.+..+..+...+..+...  .+  +.+...+.
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (366)
T TIGR00886       245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVL  324 (366)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            33344 445668999999999999999999999999999999999998887777666666554433  22  55555555


Q ss_pred             HHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHH
Q 015136          120 RGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLG  160 (412)
Q Consensus       120 r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  160 (412)
                      ..+.+++.|.. ....+.+.|..| +++|++.|+.+...++|
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       325 FVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            55555555554 555566777776 79999999988877665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.61  E-value=4.1e-07  Score=84.83  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhh-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcch--------h-HHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKS-EWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRK--------K-GFLG   95 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr--------~-~~~~   95 (412)
                      .+..++++.+........+....|.+.+ -+|.+-.+.|+.+++..+...+..+++|.++||.-+|        | .-.+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            5666777778777777777777786655 5899999999999999999999999999999988552        2 2234


Q ss_pred             HHHHHHHHHHHhhcchhHHH-HHHHHHHHhhhcCcc--ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136           96 IAMITSGIGLLSAFSPNYIS-LVTLRGLVGIGIGSG--PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus        96 ~~~~~~i~~~~~~~~~~~~~-~~~~r~l~G~~~g~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      +....++..+..++.++-.. ..+.-+..+.+....  .....-..+. -+++-+..+|+.+....+...++|.+.+.+.
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~  417 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIV  417 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence            44444555555555542111 111112222222222  1222222222 4578899999999999999999999999998


Q ss_pred             hc---CChHHHHHHHHHHHHHHHHHHHh
Q 015136          173 IT---LNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       173 ~~---~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      ..   ..||.+|++.+++.++..+.+.+
T Consensus       418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  418 TDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            43   36999999999887777544433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.61  E-value=2.5e-07  Score=86.68  Aligned_cols=121  Identities=14%  Similarity=0.057  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhh-chhhH
Q 015136          282 RTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRA-GRKLS  360 (412)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~  360 (412)
                      +.++..+...+...+.+|+...+.+.|..+.          .|+++.+++.......+...++.+++|+++||+ |||+.
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~   78 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA   78 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence            4555566666677788899888888887433          478889999999999999899999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          361 LTIMLILVFICILPLAMLQS-NILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       361 l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +.++.++.+++.+++..... .....+.+.+..++.+...+...++++|.||+
T Consensus        79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~  131 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP  131 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCC
Confidence            99999999888776654322 12233333334444555557778889999984

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.59  E-value=1.6e-06  Score=72.15  Aligned_cols=99  Identities=20%  Similarity=0.182  Sum_probs=77.5

Q ss_pred             HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 015136           42 MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRG  121 (412)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~  121 (412)
                      ..-++..-.+.++++....++|.+.-...-...+...+.|-++||-|||+.-+.-++...+++ +.-.++.+-.++++|.
T Consensus        54 WLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~  132 (454)
T KOG4332|consen   54 WLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRV  132 (454)
T ss_pred             hhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhh
Confidence            445667777889999999999988877777788888999999999999997666655555443 3456788999999999


Q ss_pred             HHhhhcCcc-cccee-eeeecc
Q 015136          122 LVGIGIGSG-PVFSA-WFLEFV  141 (412)
Q Consensus       122 l~G~~~g~~-~~~~~-~i~~~~  141 (412)
                      +.|++.+.. ..--+ +++|..
T Consensus       133 LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhh
Confidence            999998886 55444 566765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.59  E-value=2.6e-10  Score=107.80  Aligned_cols=170  Identities=19%  Similarity=0.242  Sum_probs=112.7

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh---
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA---  108 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---  108 (412)
                      +..+....+........+.+.++.+.+..  -.......+...++.++...+.||+|||+.++.+..+.+++.+..+   
T Consensus       260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~  337 (451)
T PF00083_consen  260 LQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIF  337 (451)
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33333333444555667888888888777  2223344455556777778999999999999999988888877664   


Q ss_pred             -cchhH-----HHHHHHHHHH--hhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 015136          109 -FSPNY-----ISLVTLRGLV--GIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL  180 (412)
Q Consensus       109 -~~~~~-----~~~~~~r~l~--G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~  180 (412)
                       ...+.     ...++.-.+.  +++.+..+....+..|.+|.+.|+++.++......++..+++.+...+.+..+-...
T Consensus       338 ~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~  417 (451)
T PF00083_consen  338 FLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGV  417 (451)
T ss_pred             ccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             11111     1122222222  223333366678889999999999999999999999999998888888776662334


Q ss_pred             HHHHH-HHHHHHHHHHHhccCCch
Q 015136          181 LALSS-IPSFAVLLLYSLAPESPR  203 (412)
Q Consensus       181 ~~~~~-~~~~~~~~~~~~~~~~~~  203 (412)
                      +.+.+ +..+..++.++++||+..
T Consensus       418 ~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  418 FLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             chhhHHHHHHHHhheeEEEeeCCC
Confidence            44444 444444566788999853

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.58  E-value=4.5e-06  Score=79.45  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhh-hcCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKS-EWGVSP---SAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK-GFLGIAMITS  101 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~---~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~  101 (412)
                      +.+..+..+..+........+.|+... -|+-+.   ...++....+.++..+++.+.|.+..+++|-| .++++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            444444555555555555555565533 455444   35788888999999999999999999988744 5567776666


Q ss_pred             HHHHHhhc--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          102 GIGLLSAF--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       102 i~~~~~~~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      ++.-+++.  .+|....+..-++.|++.|.. ........-..|++.-|.+.++..+.-.+|+.+|..+..-
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            55444433  346666677888999999887 5666666667899999999999999999998888776644

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.56  E-value=1.6e-06  Score=82.37  Aligned_cols=131  Identities=11%  Similarity=-0.018  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-------HHHHHHHHHHHHHHh-----hc-----chhHHHHHHHHHHHh
Q 015136           62 ESLLSTVVFAGNLVGVYLWGLLSDNYGRKKG-------FLGIAMITSGIGLLS-----AF-----SPNYISLVTLRGLVG  124 (412)
Q Consensus        62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~-----~~-----~~~~~~~~~~r~l~G  124 (412)
                      .+++.++..+...+.+++.+++.||+|+|+.       +.+|.++.+++.+..     ..     ..+.+.+....++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566667778888999999999999999973       677777777665432     11     135677778899999


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHH
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI----------TLNWRWLLALSSIPSFAVL  192 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~w~~~~~~~~~~~~~~~  192 (412)
                      +|.+.. +...+++.+..|++.+|.++|++.....+|..++..++.....          ...+.+.|...++..++..
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  469 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVA  469 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            999998 8889999999999999999999999999999999888865521          0124566666665555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.52  E-value=1e-06  Score=59.87  Aligned_cols=69  Identities=25%  Similarity=0.317  Sum_probs=59.3

Q ss_pred             HHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015136           32 LAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMIT  100 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~  100 (412)
                      ..++..........+..|...++.|+|+.++|.+.++..+...++.+++|.++||+++++..+....++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            345555566677778888999999999999999999999999999999999999999999887776554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=6.5e-08  Score=84.92  Aligned_cols=154  Identities=15%  Similarity=0.132  Sum_probs=116.8

Q ss_pred             HHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHhhcchhHHHHH
Q 015136           41 IMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG--RKKGFLGIAMITSGIGLLSAFSPNYISLV  117 (412)
Q Consensus        41 ~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~  117 (412)
                      ....-+.++. +.|++..+..+.|+..--..+.+.++..+.|.++||++  |-.....+.+..+++.....+++++..+.
T Consensus       286 lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~  365 (464)
T KOG3764|consen  286 LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW  365 (464)
T ss_pred             HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence            3344444444 56777766668898888889999999999999999999  43444456666666666677889999999


Q ss_pred             HHHHHHhhhcCcc-cccee---eeeeccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          118 TLRGLVGIGIGSG-PVFSA---WFLEFVPAA---KRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       118 ~~r~l~G~~~g~~-~~~~~---~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      +-++..|++.+.. .....   ++.|.-..+   .-|...++...++++|..+||.+++.+.+..|++|...+.++..++
T Consensus       366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            8888888887765 43333   333332223   5688999999999999999999999999999999999988887776


Q ss_pred             HHHH
Q 015136          191 VLLL  194 (412)
Q Consensus       191 ~~~~  194 (412)
                      ...+
T Consensus       446 yapv  449 (464)
T KOG3764|consen  446 YAPV  449 (464)
T ss_pred             HHHH
Confidence            6433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.49  E-value=1.5e-06  Score=76.97  Aligned_cols=159  Identities=13%  Similarity=0.084  Sum_probs=123.3

Q ss_pred             HHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc
Q 015136           31 GLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF  109 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  109 (412)
                      .++.++........+..++.+.++ .|.+..+.+...+.+..+..+|.++..++..|+...|.+.+..+...+..+..++
T Consensus       242 vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l  321 (422)
T COG0738         242 VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL  321 (422)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666677777777766 7889999999999999999999999999999999999999988888888888888


Q ss_pred             chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015136          110 SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPS  188 (412)
Q Consensus       110 ~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~  188 (412)
                      .++...+. +-++.|+..+.. |...+...+..| ++ ....|..-....+|+++.|.+.|++.|+.|-...+.....++
T Consensus       322 ~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc  398 (422)
T COG0738         322 IGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLC  398 (422)
T ss_pred             hcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            88865544 456677777877 888888888887 33 334444455567889999999999999999888877444444


Q ss_pred             HHHH
Q 015136          189 FAVL  192 (412)
Q Consensus       189 ~~~~  192 (412)
                      .+.+
T Consensus       399 ~lyV  402 (422)
T COG0738         399 YLYV  402 (422)
T ss_pred             HHHH
Confidence            4333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.47  E-value=3.8e-06  Score=65.56  Aligned_cols=114  Identities=13%  Similarity=0.150  Sum_probs=93.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceee
Q 015136           58 SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAW  136 (412)
Q Consensus        58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~  136 (412)
                      ++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-.... +-++.+.++.+-.+.|++.+.. .....+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence            33333444567777888999999999999999999999999988655543 4567888999999999999998 777789


Q ss_pred             eeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          137 FLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus       137 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      +.+...+++|++-.+++-.....+.++|.++...+.
T Consensus       114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888888877766553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.44  E-value=1.2e-05  Score=74.96  Aligned_cols=146  Identities=14%  Similarity=0.086  Sum_probs=92.8

Q ss_pred             Hhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh-----cchhHHH
Q 015136           42 MILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSA-----FSPNYIS  115 (412)
Q Consensus        42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~~  115 (412)
                      ..+....|.+. +.+|.++.+.++.......+..++..+.+.+.+|.++++.......+..++.++..     ..++++.
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~  314 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW  314 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            34444566554 45699999999998888888888888888877555554443333333333332221     1233444


Q ss_pred             HHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015136          116 LVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSF  189 (412)
Q Consensus       116 ~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~  189 (412)
                      .++..++.++|.+.. +......- .-.+..+|++.++.+.....+..+++...+++.++ +-+..|...+++..
T Consensus       315 ~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        315 SVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence            566778888888776 55553221 11223479999999888888888999998888665 44556655544433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.35  E-value=8.9e-06  Score=70.35  Aligned_cols=159  Identities=15%  Similarity=0.128  Sum_probs=119.2

Q ss_pred             hhhhhhhh-hhcCCCcchh-HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015136           45 SFIGPAVK-SEWGVSPSAE-SLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGL  122 (412)
Q Consensus        45 ~~~~~~~~-~~~~~s~~~~-~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  122 (412)
                      +...|.+. .+.+++..+. .-+.-...-.+.+.-.+.-.+.|..-.|++++.-.+.......+.-+.++.+.+-+.-+.
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~F  104 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFF  104 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhh
Confidence            34445444 3445555443 233344555667778888899999989999988888888888888899999999999999


Q ss_pred             HhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHhccC
Q 015136          123 VGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN--WRWLLALSSIPSFAVLLLYSLAPE  200 (412)
Q Consensus       123 ~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~  200 (412)
                      .|...+...+-++++-+..+++++-++.+...++.-.|...|..++..+.+...  ++..=.+......+.....+++|.
T Consensus       105 yG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~  184 (433)
T KOG3810|consen  105 YGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR  184 (433)
T ss_pred             cChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence            998877767778999999999999999999999999999999999998876433  444444444444455566677777


Q ss_pred             Cch
Q 015136          201 SPR  203 (412)
Q Consensus       201 ~~~  203 (412)
                      .++
T Consensus       185 v~r  187 (433)
T KOG3810|consen  185 VKR  187 (433)
T ss_pred             Cch
Confidence            654

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.28  E-value=4.8e-05  Score=66.80  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-----hhcchhHH-----
Q 015136           24 YLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSD-----NYGRKKGF-----   93 (412)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~-----   93 (412)
                      ...+..+.+.+..++.-.+... .+|.+.+.-|.|.++.+...-++.=.  .--+++.++.|     |+||||.-     
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            3344455566778888777777 89999998899988887654443222  22578889999     99999843     


Q ss_pred             -HHHHHHHHHHHHHh------hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHH
Q 015136           94 -LGIAMITSGIGLLS------AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEA  165 (412)
Q Consensus        94 -~~~~~~~~i~~~~~------~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  165 (412)
                       ++|.++..++...-      +-.++...+....++.-+.++.- .++-.+......+++.|.+......+.+.|.+++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence             34444444443211      12244444544556666666766 66666777777888888888888888887777776


Q ss_pred             HHH
Q 015136          166 ALA  168 (412)
Q Consensus       166 ~~~  168 (412)
                      .+.
T Consensus       187 ~if  189 (510)
T KOG3574|consen  187 VVF  189 (510)
T ss_pred             cee
Confidence            544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.24  E-value=4.6e-05  Score=70.11  Aligned_cols=89  Identities=9%  Similarity=-0.010  Sum_probs=80.1

Q ss_pred             CCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHH
Q 015136          324 SMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIAC  403 (412)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (412)
                      +..+...|......-.+.++.-++.+++.+|+|+-+++.++..+..+=.+.+...++.|..+.+=++-+...+.++...-
T Consensus       402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~  481 (618)
T KOG3762|consen  402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII  481 (618)
T ss_pred             CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence            45566667777777888899999999999999999999999999999999999999999998889999999999999999


Q ss_pred             hhccCCCCC
Q 015136          404 IFTPEQLGW  412 (412)
Q Consensus       404 ~~~~e~~P~  412 (412)
                      +|+++..||
T Consensus       482 sY~s~vaPp  490 (618)
T KOG3762|consen  482 SYASHVAPP  490 (618)
T ss_pred             HHHHhhCCC
Confidence            999999986

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.19  E-value=7.1e-05  Score=70.12  Aligned_cols=139  Identities=12%  Similarity=-0.019  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHhhcchh---------------------HHHHHHHHH
Q 015136           64 LLSTVVFAGNLVGVYLWGLLSDNYGR-KKGFLGIAMITSGIGLLSAFSPN---------------------YISLVTLRG  121 (412)
Q Consensus        64 ~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~r~  121 (412)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            34445555556778888999999995 77778898888888776654432                     266677788


Q ss_pred             HHhhhcCcc-ccceeeeeecccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHH-HH
Q 015136          122 LVGIGIGSG-PVFSAWFLEFVPA--AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN--WRWLLALSSIPSFAVLL-LY  195 (412)
Q Consensus       122 l~G~~~g~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~~~~~~~~~~~~~~-~~  195 (412)
                      +.|+..+.. ....+++++..++  ++.|..+|+.+.+..+.+++..+..+.+.+.+|  -.+++.+.++..++..+ .+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            899998887 7778999998885  456999999999999999999988887655444  55677777887777744 45


Q ss_pred             HhccCCc
Q 015136          196 SLAPESP  202 (412)
Q Consensus       196 ~~~~~~~  202 (412)
                      +.+|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            5666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.17  E-value=0.0019  Score=60.78  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=97.5

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFA-GNLVGVYLWGLLSDNYGRKKGFLGIAM   98 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~~~~~   98 (412)
                      .+..+..++.+.+..++..++.+.+-..-..+.-+- .+++.+..+-....+ ...+...+..++++|++|++++-+...
T Consensus        19 ~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~-~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~   97 (491)
T PF03219_consen   19 HRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTA-QGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIII   97 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            455666677777777776666554433322222111 256666666664444 555667889999999999998876665


Q ss_pred             HHHHHHHHhhcc---------h----------------------hHHHHHHHHHHHhhhcCcc-c-cceeeeeecccccc
Q 015136           99 ITSGIGLLSAFS---------P----------------------NYISLVTLRGLVGIGIGSG-P-VFSAWFLEFVPAAK  145 (412)
Q Consensus        99 ~~~i~~~~~~~~---------~----------------------~~~~~~~~r~l~G~~~g~~-~-~~~~~i~~~~~~~~  145 (412)
                      .+.....+.++.         +                      +.|.+.+..+..-+-.... + .-..+.+|.++.++
T Consensus        98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e  177 (491)
T PF03219_consen   98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE  177 (491)
T ss_pred             HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            555554444331         1                      1122222222222222222 3 34578889999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          146 RGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       146 r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      -.|..+++..+.++|.+++..+...+.+
T Consensus       178 AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  178 AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.15  E-value=8.1e-06  Score=76.56  Aligned_cols=160  Identities=16%  Similarity=0.079  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN----YGRKKGFLGIAMIT  100 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr----~Grr~~~~~~~~~~  100 (412)
                      .+...++..++.....+.+...+|.+.++ .|.|..+.+.+...+.++.+++.+++|+++||    ..+|..+.....+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34455666777777778888889988888 56899999999999999999999999999999    67777777666666


Q ss_pred             HHHH-HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccch-hhHHHHHHHHHHHHHHHHHHHH-HHHHhcCC
Q 015136          101 SGIG-LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKR-GMWMVIFSTFWTLGSIFEAALA-WIVMITLN  176 (412)
Q Consensus       101 ~i~~-~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~  176 (412)
                      .+.. +......+......+-+....+.... +......++...++.| -...+....+.+.+.++.+.+- +.....++
T Consensus       354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~  433 (495)
T KOG2533|consen  354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence            5555 44443433444333333334444444 5666777766655444 4444455555555554444433 33334467


Q ss_pred             hHHHHHHHH
Q 015136          177 WRWLLALSS  185 (412)
Q Consensus       177 w~~~~~~~~  185 (412)
                      |-..|....
T Consensus       434 ~~~~f~~~~  442 (495)
T KOG2533|consen  434 WGAVFYMLV  442 (495)
T ss_pred             hhhHHHHHH
Confidence            888884443

>PTZ00207 hypothetical protein; Provisional

Probab=98.14  E-value=2.6e-05  Score=74.72  Aligned_cols=115  Identities=11%  Similarity=-0.016  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHH
Q 015136          285 LLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIM  364 (412)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~  364 (412)
                      +.............|++..+.+.+.           +++|++..+.+........ .....++.|++.||+|+|+++.++
T Consensus        30 lva~~~~~~~~g~~y~fsv~s~~L~-----------~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig   97 (591)
T PTZ00207         30 LVLGAFCSICTSFMYAFNLISGAMQ-----------ARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLS   97 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3333333334445566666666554           3456888887777665333 334566889999999999999999


Q ss_pred             HHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          365 LILVFICILPLAML------QSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       365 ~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      .++..++.++.++.      .+.+.+.+..++.|++.+..++.....+.+.||
T Consensus        98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp  150 (591)
T PTZ00207         98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP  150 (591)
T ss_pred             HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            99999999888875      355556666667777776666666666777666

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.07  E-value=1e-05  Score=73.02  Aligned_cols=91  Identities=13%  Similarity=-0.007  Sum_probs=85.6

Q ss_pred             ccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHH
Q 015136          322 SQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTI  401 (412)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (412)
                      .+|.++...|++.....+...+.++++|++.||++|++++.+|..+-.++.++-.+..+.|.+.++=.+.|.+-.+..|+
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~i  141 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPI  141 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccc
Confidence            35788999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             HHhhccCCCCC
Q 015136          402 ACIFTPEQLGW  412 (412)
Q Consensus       402 ~~~~~~e~~P~  412 (412)
                      .+++++|.+|.
T Consensus       142 a~s~IaD~f~~  152 (493)
T KOG1330|consen  142 APSLIADSFPD  152 (493)
T ss_pred             chhHhhhcCcc
Confidence            99999999984

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.00  E-value=0.0025  Score=61.32  Aligned_cols=176  Identities=13%  Similarity=0.059  Sum_probs=129.9

Q ss_pred             cHHHHHHHHHHHHHHHhhHH-HhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHH
Q 015136           22 FQYLVFAYAGLAVFAEAMEI-MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMI   99 (412)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~   99 (412)
                      ..|+....+.......-+.. ......+.++.++++.+...+.-..+.+.-......+..++++|- +||-+++.++.++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444433333333333332 233567788889999988888888888888888999999999996 5888999999888


Q ss_pred             HHHHHHHhhcchh-------------------------HHHHHHHHHHHhhhcCcc-ccceeeeeeccc---c-cc--hh
Q 015136          100 TSGIGLLSAFSPN-------------------------YISLVTLRGLVGIGIGSG-PVFSAWFLEFVP---A-AK--RG  147 (412)
Q Consensus       100 ~~i~~~~~~~~~~-------------------------~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~---~-~~--r~  147 (412)
                      ..++..+...+..                         ...++.+..+..+|.|.. +...+.-+|.++   + ++  +.
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            8888644432111                         234666777888899998 888999999988   3 22  23


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 015136          148 MWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       148 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      .-+.++....++|..++..+..+.-++.+|.+.|.+..+...+.+++.+.
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            67788999999999999999999989999999999988776666554433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.99  E-value=8.8e-06  Score=62.95  Aligned_cols=77  Identities=19%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             HHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          336 LASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       336 ~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ...++.+++.++.|++.||+|||+.+..+..+..++.+.+...++.+...+..++.+++.+...+....+..|.+|+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            34567788999999999999999999999888888888777767777777777888888888888888888888874

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.98  E-value=3.5e-05  Score=70.52  Aligned_cols=125  Identities=15%  Similarity=0.013  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHh-hchhhH
Q 015136          282 RTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDR-AGRKLS  360 (412)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~  360 (412)
                      |.+...+..-+.=-++||++-..+..|....-      .+..|++++++.-....+....-+..+++||++|| +|+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~------~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQL------GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc------cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            34445555555566778887666665553321      11245888888888877777777888999999999 599999


Q ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          361 LTIMLILVFICILPLAMLQ--SNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       361 l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +..+.++.+++-+++....  +...+.+.+.+...+.+..=+...++++|+||+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~  148 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK  148 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence            9999999999999999874  566677777777788888889999999999985

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.94  E-value=0.014  Score=54.56  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             chHHHHHHHHcchhhHHHHHHHHHHhhchh-hHHHHHHHHHHHH--HHHHH----------hhhhhHHHHHHHHHHHHHH
Q 015136          329 SLYLSVFLASLGELPGLVLAGIIVDRAGRK-LSLTIMLILVFIC--ILPLA----------MLQSNILITGLLVGARMFA  395 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr-~~l~~~~~~~~~~--~~~l~----------~~~~~~~~~~~~~~~~~~~  395 (412)
                      ..-.....+.++..+|+.+..+..- -++| +.+.+..+.=.+.  .+.+.          +.++.+...+..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            3345666788899999986654311 1222 1222222211111  11111          1245666777788888888


Q ss_pred             hhHhHHHHhhccCCCC
Q 015136          396 FGAFTIACIFTPEQLG  411 (412)
Q Consensus       396 ~~~~~~~~~~~~e~~P  411 (412)
                      |-.......+.++..+
T Consensus       387 Gy~~s~~m~~~p~~v~  402 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVD  402 (437)
T ss_pred             hHHHHHHHHhcCCCCC
Confidence            8777888877777654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.88  E-value=0.00026  Score=68.36  Aligned_cols=152  Identities=22%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             hhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHH---HHHHHHHHh
Q 015136           48 GPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYIS---LVTLRGLVG  124 (412)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~r~l~G  124 (412)
                      .+.....+|.+..   .................+.+.|++|||.....+..+..++.++.++..+...   ..+...+..
T Consensus       341 l~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (521)
T KOG0255|consen  341 LSLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGK  417 (521)
T ss_pred             hhhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence            3444444554433   3333333355555666689999999999999999999999998887654332   444445555


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHhccCCc
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV-LLLYSLAPESP  202 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~  202 (412)
                      ++.+.. .....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+....+. .+...++||+.
T Consensus       418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            555554 5558889999999999999999999999999999988766544 22122222234444444 44558889985


Q ss_pred             h
Q 015136          203 R  203 (412)
Q Consensus       203 ~  203 (412)
                      .
T Consensus       497 ~  497 (521)
T KOG0255|consen  497 G  497 (521)
T ss_pred             C
Confidence            4

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.82  E-value=0.00021  Score=65.95  Aligned_cols=91  Identities=11%  Similarity=-0.049  Sum_probs=82.1

Q ss_pred             cccCCCCcc-hHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHh
Q 015136          321 VSQSMHDSS-LYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAF  399 (412)
Q Consensus       321 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  399 (412)
                      ++.|+++.+ .+........+..+..+++|+++||+|.|+++..+.+...+..+++.+.++...+.++-++.|++.+..+
T Consensus        54 ~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~  133 (511)
T TIGR00806        54 TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI  133 (511)
T ss_pred             HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346799998 9999999999999999999999999999999999999999999999998888888889999999988888


Q ss_pred             HHHHhhccCCCCC
Q 015136          400 TIACIFTPEQLGW  412 (412)
Q Consensus       400 ~~~~~~~~e~~P~  412 (412)
                       ....++.+.+|+
T Consensus       134 -A~~syI~~WfP~  145 (511)
T TIGR00806       134 -AYSSYIFSLVPP  145 (511)
T ss_pred             -HHHHHHHHHCCH
Confidence             888888777763

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.81  E-value=4.7e-05  Score=69.96  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHHHHHhhcc---hh------HHHHHHHHHHHhhhcCcc-ccceeeeeeccccc---chhhHHHHHHHHH
Q 015136           91 KGFLGIAMITSGIGLLSAFS---PN------YISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAA---KRGMWMVIFSTFW  157 (412)
Q Consensus        91 ~~~~~~~~~~~i~~~~~~~~---~~------~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~---~r~~~~~~~~~~~  157 (412)
                      |++++|.++..+|.++..++   .+      .+.++++..+.++|.|.. +...++.+|.++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888774332   22      367888999999999999 99999999999765   4677888899999


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhc
Q 015136          158 TLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       158 ~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      ++|..++..+.+++.++.||.+.|.+.++..++.++..+.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998877776654443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.80  E-value=0.0014  Score=60.35  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhhHHHhhhhhhhhhhhh--cCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-----hhcchhHHH------H
Q 015136           29 YAGLAVFAEAMEIMILSFIGPAVKSE--WGVSPSAESLLSTVVFAGNLVGVYLWGLLSD-----NYGRKKGFL------G   95 (412)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~d-----r~Grr~~~~------~   95 (412)
                      ++.+.++.++.-.+......|.+.++  -+.|.++.+..+-+.. -+. .-+++.++.|     |+||||..+      .
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~-PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASY-PFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeec-hhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            34455777776665554567888888  6888888876432211 111 1345555555     899999654      3


Q ss_pred             HHHHHHHHHHHh----------hc-------ch--hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHH
Q 015136           96 IAMITSGIGLLS----------AF-------SP--NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFST  155 (412)
Q Consensus        96 ~~~~~~i~~~~~----------~~-------~~--~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~  155 (412)
                      |..+..++.-..          ..       .+  +...+....++.-+-.+.- .++-.+.-....+++++.|..-...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            333333333220          00       00  1112333333333444444 5555666667788899888888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015136          156 FWTLGSIFEAALAWIV  171 (412)
Q Consensus       156 ~~~~g~~~~~~~~~~l  171 (412)
                      +.+.|..++..+.-.+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            8888888776655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.78  E-value=0.00019  Score=66.92  Aligned_cols=125  Identities=20%  Similarity=0.084  Sum_probs=111.8

Q ss_pred             hhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHH-HHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhh
Q 015136           48 GPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWG-LLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIG  126 (412)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~  126 (412)
                      .-++...++++.++.+...+.......+++.+.. .+...+|-|+++..|+....+...+.+++++.|+.+....+.++.
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA  344 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence            3455677899999999999999998889888777 788889999999999999999999999999999999999998888


Q ss_pred             cCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          127 IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus       127 ~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      ....+...+.++.+..++++|++.++......+...++|.+-+.+.
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            6666888899999999999999999999999999999998877764

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.77  E-value=0.014  Score=53.70  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=100.5

Q ss_pred             CCccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCC---CcchhHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHH
Q 015136           19 FGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGV---SPSAESLLSTVVFA-GNLVGVYLWGLLSDNYGRKKGFL   94 (412)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~Grr~~~~   94 (412)
                      .++..+..++.+.+.+++..+..+.+    -.+.+.+.+   +++.+.++-+..-+ +..+..++.+++++++.+++++-
T Consensus        21 i~r~E~~kflpl~Ll~f~I~~ny~~l----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~   96 (509)
T COG3202          21 IRRYELKKFLPLALLFFCILFNYNLL----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFY   96 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHH
Confidence            34556666666666666666655443    455555544   46667777777777 77888999999999999999888


Q ss_pred             HHHHHHHHHHHHhhcc---------hh-----------------------HHHHHHHHHHHhhhcCcc-c-cceeeeeec
Q 015136           95 GIAMITSGIGLLSAFS---------PN-----------------------YISLVTLRGLVGIGIGSG-P-VFSAWFLEF  140 (412)
Q Consensus        95 ~~~~~~~i~~~~~~~~---------~~-----------------------~~~~~~~r~l~G~~~g~~-~-~~~~~i~~~  140 (412)
                      .-...+....+++++.         ++                       .|...+.....=+=.... . .-.....|.
T Consensus        97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNei  176 (509)
T COG3202          97 IILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777666666665542         11                       122222222211111111 2 234566788


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          141 VPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       141 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      +..++-.|..++++.+.+++..++..+..++.+
T Consensus       177 tt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         177 TTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888999999999999999999999888888866

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.65  E-value=0.00019  Score=63.39  Aligned_cols=122  Identities=15%  Similarity=0.105  Sum_probs=108.4

Q ss_pred             hhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCc
Q 015136           52 KSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYG--RKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        52 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~  129 (412)
                      .+.+|.++.|+|-+.+...+++.+.+....+..||..  -+-.+..++.++.-..++.+.++....+..+..+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4779999999999999999999999999999999988  77778888888887788888888888899999998888877


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI  173 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  173 (412)
                      . +....++....|.++||.+.|+......++-++||+++|.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            7 7777889999999999999999999999999999999988743

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.62  E-value=0.00099  Score=60.36  Aligned_cols=160  Identities=12%  Similarity=0.052  Sum_probs=103.2

Q ss_pred             HHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHhh-c---chhHHH
Q 015136           41 IMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGR-KKGFLGIAMITSGIGLLSA-F---SPNYIS  115 (412)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~-~---~~~~~~  115 (412)
                      .+.....+....+.-|.+....|++..+..++..+++.+.|.+.||... |.++++......++..... .   ....+.
T Consensus       282 F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~vi  361 (480)
T KOG2563|consen  282 FNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVI  361 (480)
T ss_pred             HHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence            3444444554455567777889999999999999999999999999875 4455555554444432211 1   123344


Q ss_pred             HHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---hHH-HHHHHHHHHHH
Q 015136          116 LVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN---WRW-LLALSSIPSFA  190 (412)
Q Consensus       116 ~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---w~~-~~~~~~~~~~~  190 (412)
                      ++..-.+.|++.... |...-+-.|...|..-+...|+.+...++=..+-..+.+...+..+   |.. .-+......++
T Consensus       362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l  441 (480)
T KOG2563|consen  362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALL  441 (480)
T ss_pred             hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHH
Confidence            555666777777666 8888999998877777778888777666666666666666666555   333 33333444444


Q ss_pred             HHHHHHhccC
Q 015136          191 VLLLYSLAPE  200 (412)
Q Consensus       191 ~~~~~~~~~~  200 (412)
                      ..++..+++|
T Consensus       442 ~~~lva~~r~  451 (480)
T KOG2563|consen  442 GAILVAFFRP  451 (480)
T ss_pred             HHHHHhhhhh
Confidence            4444444444

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.52  E-value=0.00059  Score=46.32  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             ccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHH
Q 015136          322 SQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILV  368 (412)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~  368 (412)
                      +.|+++.+.+....+..+..+++.++.|.++||.++++..+....++
T Consensus        29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            35799999999999999999999999999999999888877665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.50  E-value=0.00019  Score=70.52  Aligned_cols=92  Identities=12%  Similarity=0.009  Sum_probs=77.9

Q ss_pred             cccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh---------------------
Q 015136          321 VSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQ---------------------  379 (412)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~---------------------  379 (412)
                      ..++++..+.+++.+...++..++.++.+++.||.+||+.+.++.++.+++.+++++.+                     
T Consensus        61 k~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~  140 (633)
T TIGR00805        61 RRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA  140 (633)
T ss_pred             hhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence            44678999999999999999999999999999999999999999999999998887532                     


Q ss_pred             ------------------------------hhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          380 ------------------------------SNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       380 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                                                    ....+++.-++.|++.+..++...+++.|.+|+
T Consensus       141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~  203 (633)
T TIGR00805       141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS  203 (633)
T ss_pred             ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence                                          112344567788888888899999999999885

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.29  E-value=0.00099  Score=56.65  Aligned_cols=81  Identities=26%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHH
Q 015136          285 LLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIM  364 (412)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~  364 (412)
                      +.............|.+..+.|.+.+           ..|+++.+.........++..+| ++.|.+.||+|.+.++.++
T Consensus         5 l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~-----------~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG   72 (250)
T PF06813_consen    5 LVASIWVQLCSGTTYTFSAYSPQLKS-----------RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIG   72 (250)
T ss_pred             HHHHHHHHHhcCcccchhhhhHHHHH-----------HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHH
Confidence            33344444455567777777776663           45799999888888888888775 8899999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 015136          365 LILVFICILPLAM  377 (412)
Q Consensus       365 ~~~~~~~~~~l~~  377 (412)
                      .+...++...+..
T Consensus        73 ~~~~~~GY~~~~l   85 (250)
T PF06813_consen   73 AVLGFVGYGLLWL   85 (250)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988875

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.26  E-value=0.11  Score=45.37  Aligned_cols=72  Identities=14%  Similarity=0.132  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecc
Q 015136           69 VFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFV  141 (412)
Q Consensus        69 ~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~  141 (412)
                      ..+..+..+++.+.+..++|-|.++.++......... .-+-+.+..++-+-...|++.+.. ..--+|+++.-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            4445566777777999999999999988877765433 334567888999999999999987 66667776654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.98  E-value=0.15  Score=46.29  Aligned_cols=113  Identities=6%  Similarity=-0.053  Sum_probs=55.0

Q ss_pred             HHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH---HHh
Q 015136           31 GLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG---LLS  107 (412)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~  107 (412)
                      ++..+.....++.+....+++.+++-.+.. ..-....+.+...+...+...+--+...|.-..++..+..+..   +.+
T Consensus        24 ~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l  102 (406)
T KOG1479|consen   24 LLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTL  102 (406)
T ss_pred             HHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445567777778888888755444 3344444555554545555544444443332222222222221   111


Q ss_pred             --hc-------chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccc
Q 015136          108 --AF-------SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK  145 (412)
Q Consensus       108 --~~-------~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~  145 (412)
                        +.       ...+...++.-.+.+.+.|.. .......+ .+|++.
T Consensus       103 ~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~y  149 (406)
T KOG1479|consen  103 DLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEY  149 (406)
T ss_pred             HHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHH
Confidence              11       123455556666777777765 44444443 345554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.87  E-value=0.0029  Score=59.30  Aligned_cols=146  Identities=19%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhc-c---------hhHHHHHHHHHHHhhh
Q 015136           57 VSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAF-S---------PNYISLVTLRGLVGIG  126 (412)
Q Consensus        57 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~---------~~~~~~~~~r~l~G~~  126 (412)
                      .|+...+.+..+..++..+|..+......+..-|+++.++.++.++..+.-.. .         ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888899888888899999999988888889999998888877766653221 1         1222222334455555


Q ss_pred             cCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHh
Q 015136          127 IGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN--------WRWLLALSSIPSFAVLLLYSL  197 (412)
Q Consensus       127 ~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--------w~~~~~~~~~~~~~~~~~~~~  197 (412)
                      .+.. .....+++|..|+..-|...++..+..++|..++..++..+.+.++        -.+..++..+..++.+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            4554 5566778999999999999999999999999999999999887654        223334444555444555666


Q ss_pred             ccCCc
Q 015136          198 APESP  202 (412)
Q Consensus       198 ~~~~~  202 (412)
                      +|+..
T Consensus       412 Lp~~~  416 (433)
T PF03092_consen  412 LPPQK  416 (433)
T ss_pred             cCCCc
Confidence            77654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.71  E-value=0.0044  Score=42.51  Aligned_cols=63  Identities=21%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             cccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 015136          321 VSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNIL  383 (412)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~  383 (412)
                      ++.+++..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+.++.+.
T Consensus        20 ~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen   20 ADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            455799999999999999999999999999999988899999999999999999888766543

Note that many members are hypothetical proteins.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.69  E-value=0.042  Score=48.88  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             ccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhH
Q 015136          322 SQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFT  400 (412)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  400 (412)
                      ++|++..+++..+....+...+...+.|.+.||+|||+..+...++.+++++.-. .++.+.+++.=++.|......+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999998888999999999999999999999998888888886443 34455555555555555444443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.49  E-value=0.054  Score=50.26  Aligned_cols=144  Identities=19%  Similarity=0.128  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015136           27 FAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  106 (412)
                      .+...++...-+++.-.++.....+...-|+++..+|..-+...+....+.+...++.+|+|..|.-+++.........+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            44444555555555555666666666777999999999999999999999999999999999999888887765544433


Q ss_pred             hhc---c---h----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          107 SAF---S---P----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       107 ~~~---~---~----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      +..   .   +    +...++.+-.+.=+|.=.. ....-++-|..|+++||...|.-.+..++-.++...++-.
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            321   1   1    2233333444444443334 5556778899999999999999988888877776655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.47  E-value=0.13  Score=49.27  Aligned_cols=139  Identities=17%  Similarity=0.066  Sum_probs=81.2

Q ss_pred             hhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH---HHHHHHh----hcchhH-HHHHHHH
Q 015136           49 PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMIT---SGIGLLS----AFSPNY-ISLVTLR  120 (412)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~---~i~~~~~----~~~~~~-~~~~~~r  120 (412)
                      -.+.--+|-+....+.+.+++..|.++|+.+++++.++--++.. .+-..+.   .++..+.    .+.... ..++...
T Consensus        39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~  117 (521)
T PRK03612         39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLV  117 (521)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445568888899999999999999999999988744333322 1111111   1111111    111111 1123334


Q ss_pred             HHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 015136          121 GLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM-ITLNWRWLLALSSIPSF  189 (412)
Q Consensus       121 ~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~w~~~~~~~~~~~~  189 (412)
                      ++.++..|+. |....+..+.. .++-|...|-......+|+++|.++.+++. ...|-....++.+.+.+
T Consensus       118 ~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~  187 (521)
T PRK03612        118 LLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL  187 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            5567777776 66554443321 223467788888889999999999887754 35675444444444333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.12  Score=48.03  Aligned_cols=103  Identities=19%  Similarity=0.167  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhcchhHHHHHHHHHHHHHHHhhcc------------------hhHHHHHHHHHHHhh
Q 015136           67 TVVFAGNLVGVYLWGLLSD---NYGRKKGFLGIAMITSGIGLLSAFS------------------PNYISLVTLRGLVGI  125 (412)
Q Consensus        67 s~~~~~~~i~~~~~g~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~r~l~G~  125 (412)
                      -...+|..+++.+.+.+.+   |+||++.+.++..+..++.++....                  +++....+.-++.|+
T Consensus       286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence            3444555566666777775   5789999999999888888766442                  235566777899999


Q ss_pred             hcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          126 GIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       126 ~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      +.+.. ...+.++...+ +++|..+.++...-..++..++......
T Consensus       366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99998 77888888888 6888889988888888777765544443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.23  E-value=0.0057  Score=56.87  Aligned_cols=174  Identities=9%  Similarity=0.033  Sum_probs=108.7

Q ss_pred             CCCccHHHHHHHHHHHHHHHhhHHHh-hhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHH----HHHHHHH-hhhcchh
Q 015136           18 GFGKFQYLVFAYAGLAVFAEAMEIMI-LSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGV----YLWGLLS-DNYGRKK   91 (412)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~----~~~g~l~-dr~Grr~   91 (412)
                      +..+..|...+.+.+..+...+.... -+...+.....++++.++.-+..+.......+-+    +..+... -++.+|+
T Consensus       255 ~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~  334 (488)
T KOG2325|consen  255 KKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR  334 (488)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence            34566777777776766666655554 3344556677788888877655554433333222    2222222 2334566


Q ss_pred             HHHHHHHHHHHHHHHhhcc-------------------------------hhHHHHHHH-HHHHhhhcCcc-ccceeeee
Q 015136           92 GFLGIAMITSGIGLLSAFS-------------------------------PNYISLVTL-RGLVGIGIGSG-PVFSAWFL  138 (412)
Q Consensus        92 ~~~~~~~~~~i~~~~~~~~-------------------------------~~~~~~~~~-r~l~G~~~g~~-~~~~~~i~  138 (412)
                      .++.+.+.......+....                               .+.+.+++. -++.|.+.-.. ....+.-+
T Consensus       335 ~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS  414 (488)
T KOG2325|consen  335 IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS  414 (488)
T ss_pred             eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence            6666644444333322110                               011223333 34456655555 45567788


Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          139 EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       139 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      |...|++++.+.+++......+..++|.+........|.|+.+.+.+...++.
T Consensus       415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             HHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988889888887776555444

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.19  E-value=0.039  Score=46.61  Aligned_cols=55  Identities=25%  Similarity=0.452  Sum_probs=35.1

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHH---Hh--cCChHHHHHHHHHHHHHHHHHHHhc
Q 015136          144 AKRGMWMVIFSTFWTLGSIFEAALAWIV---MI--TLNWRWLLALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       144 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~~--~~~w~~~~~~~~~~~~~~~~~~~~~  198 (412)
                      |+|+....+...+.++|.++....--.-   .+  ...|++.+.+.+++.++-++.+.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5667777777778888887754432211   11  2359999998887776665555444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.01  E-value=0.052  Score=49.58  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=76.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH-----HHHhhcchhHHHHHHHHHHHhhhcCcc-c
Q 015136           58 SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI-----GLLSAFSPNYISLVTLRGLVGIGIGSG-P  131 (412)
Q Consensus        58 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~r~l~G~~~g~~-~  131 (412)
                      ..++..+....|.+|-.++.--...+  |+  |+..+...+-..-.     ....-+.++.|..++.-+..|+..|.. .
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            34566677777777766664432221  33  44444333222211     122334678898888899999998887 6


Q ss_pred             cceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          132 VFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM  172 (412)
Q Consensus       132 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  172 (412)
                      .+...+.|..|+++|..++|....+-++|..++.+++-.+-
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            66677788889999999999999999999999888877653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.92  E-value=0.06  Score=53.02  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=63.7

Q ss_pred             cCCCCcchHHHHHHHHcchhhHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHH
Q 015136          323 QSMHDSSLYLSVFLASLGELPGLVLAGIIVDR-AGRKLSLTIMLILVFICILPLAMLQS--------NILITGLLVGARM  393 (412)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~  393 (412)
                      .|.+...+......+....-+..+++|++.|+ +||++.+.++.++..++..++.+...        ....++.+.+...
T Consensus        18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~   97 (654)
T TIGR00926        18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL   97 (654)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence            36777777777777777777888899999999 69999999999998888887775311        1223444555666


Q ss_pred             HHhhHhHHHHhhccCCCC
Q 015136          394 FAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       394 ~~~~~~~~~~~~~~e~~P  411 (412)
                      +.+++-|...+...|.++
T Consensus        98 G~GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFE  115 (654)
T ss_pred             hccccccCchhhhHhhcC
Confidence            666666777777666553

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.88  E-value=0.91  Score=35.66  Aligned_cols=83  Identities=14%  Similarity=0.018  Sum_probs=60.3

Q ss_pred             CCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHh
Q 015136          325 MHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACI  404 (412)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (412)
                      .++..-.....+......+.+++.+.+.+++|.|+.++++.+...+-...... ++.+.++....+.|++.+..+.....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            33444445556666777888899999999999999999999988877666543 44566667777888877777766655


Q ss_pred             hccC
Q 015136          405 FTPE  408 (412)
Q Consensus       405 ~~~e  408 (412)
                      ++.+
T Consensus       113 ylt~  116 (156)
T PF05978_consen  113 YLTS  116 (156)
T ss_pred             HHHH
Confidence            5544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.46  E-value=0.52  Score=41.08  Aligned_cols=137  Identities=12%  Similarity=-0.013  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCccccceeeeeecc
Q 015136           62 ESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFV  141 (412)
Q Consensus        62 ~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~i~~~~  141 (412)
                      .|.+.-+-.+-..+..+.+....||+---.=..+..++.+.+..+.+++++.++-+.+-.+..++.|..-+...-.+..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            34444455556666777778888886543335566677788888999999999999999999888887533333333444


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHhccCCc
Q 015136          142 PAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI--TLNWRWLLALSSIPSFAVLLLYSLAPESP  202 (412)
Q Consensus       142 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  202 (412)
                      ++    ...+-+..+.+..+++|..--..+.+  ..+-|...++...+-++..+.++++-++|
T Consensus       144 ~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  144 PS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             CC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            43    33455666666666676665555555  34567777777665555555555544444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.25  E-value=0.17  Score=44.42  Aligned_cols=83  Identities=28%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             chHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhHhHHHHhhc
Q 015136          329 SLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQS--NILITGLLVGARMFAFGAFTIACIFT  406 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (412)
                      ..+.......+...++.++.|.+.||.|||+.+..+......+.+...+..+  .....+.....+++.+...+...++.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  119 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5677777888888888899999999999997877777654444444444333  44444444446777777888888888


Q ss_pred             cCCCC
Q 015136          407 PEQLG  411 (412)
Q Consensus       407 ~e~~P  411 (412)
                      .|.+|
T Consensus       120 ~~~~~  124 (338)
T COG0477         120 SEWFP  124 (338)
T ss_pred             HHhcC
Confidence            88877

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.48  E-value=0.87  Score=42.72  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHH---HHHHHHHhhc---------chhHHHHHHHHHHHhhhcCc
Q 015136           63 SLLSTVVFAGNLVGVYLWGLLSDNYGRK-KGFLGIAMI---TSGIGLLSAF---------SPNYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        63 ~~~~s~~~~~~~i~~~~~g~l~dr~Grr-~~~~~~~~~---~~i~~~~~~~---------~~~~~~~~~~r~l~G~~~g~  129 (412)
                      -.....+++|-.+|..+..+.. .-++| +.+.+..++   +....++|..         .++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4556778888888887554321 11222 122222222   2222233322         24566677779999999998


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV  171 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  171 (412)
                      . ..+..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7 77778888888899999999999999999999888776544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=92.12  E-value=0.043  Score=52.85  Aligned_cols=149  Identities=19%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhHHHhhhhhhh-hhhhhcCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhc--chhHHHHHHHHHH
Q 015136           26 VFAYAGLAVFAEAMEIMILSFIGP-AVKSEWGVSPSAESLLSTVVFA-GNLVGVYLWGLLSDNYG--RKKGFLGIAMITS  101 (412)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~G--rr~~~~~~~~~~~  101 (412)
                      ++....++.....+....+..+.| ++..+|+.++++.+++.+...+ +.++|.+++|++..|+.  .|+.+....+...
T Consensus       306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~  385 (539)
T PF03137_consen  306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI  385 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence            455566666666666666666665 5677899999999998876666 77888999999999874  4444444444333


Q ss_pred             HHHHHh---hc--c---------h----------------------------------------hHHHHHHHHHHHhhhc
Q 015136          102 GIGLLS---AF--S---------P----------------------------------------NYISLVTLRGLVGIGI  127 (412)
Q Consensus       102 i~~~~~---~~--~---------~----------------------------------------~~~~~~~~r~l~G~~~  127 (412)
                      ++.+..   .+  +         .                                        ++..+++..++.-+..
T Consensus       386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~  465 (539)
T PF03137_consen  386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT  465 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence            333220   00  0         0                                        0112333333333333


Q ss_pred             Ccc-ccceeeeeecccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 015136          128 GSG-PVFSAWFLEFVPAAKRGMWMVIFSTFW-TLGSIFEAALAWIVMIT  174 (412)
Q Consensus       128 g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~  174 (412)
                      +.. ......+-+..|+++|+.++|+..... -+|.+-||++.|.++|.
T Consensus       466 ~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  466 FMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             HhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            333 334445557889999999999966544 45778888888888775

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=90.96  E-value=0.083  Score=47.11  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=3.0

Q ss_pred             HHHHHHHcchhhHHHHHHHHHHhh-chhhHHHHHHHHHH--HHHHHHH-----------hhhhhHHHHHHHHHHHHHHhh
Q 015136          332 LSVFLASLGELPGLVLAGIIVDRA-GRKLSLTIMLILVF--ICILPLA-----------MLQSNILITGLLVGARMFAFG  397 (412)
Q Consensus       332 ~~~~~~~~~~~~g~~~~g~l~dr~-grr~~l~~~~~~~~--~~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~  397 (412)
                      .....+.++..+|+.+.++..-+. .+|.+... .+.=.  +-++++.           ..++.++..+..++.++..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~-s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWIL-SLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHH-HHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            346678899999999888753221 23433332 11111  1111111           123455666677777877777


Q ss_pred             HhHHHHhhccCCCC
Q 015136          398 AFTIACIFTPEQLG  411 (412)
Q Consensus       398 ~~~~~~~~~~e~~P  411 (412)
                      .......+.++..+
T Consensus       265 l~tl~m~~~p~~v~  278 (309)
T PF01733_consen  265 LSTLAMMYAPKSVS  278 (309)
T ss_dssp             --HHHH--------
T ss_pred             hhhceeeeCCCcCC
Confidence            77777777766544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.89  E-value=2  Score=39.30  Aligned_cols=111  Identities=16%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             cchhHHHHHH-HHHHHHHHHHHHHHHHhhhcchhHHHHHHH-HHHHHHHH-h------hcchhHHHHHHHHHHHhhhcCc
Q 015136           59 PSAESLLSTV-VFAGNLVGVYLWGLLSDNYGRKKGFLGIAM-ITSGIGLL-S------AFSPNYISLVTLRGLVGIGIGS  129 (412)
Q Consensus        59 ~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~-~~~i~~~~-~------~~~~~~~~~~~~r~l~G~~~g~  129 (412)
                      ..-.-.+..+ +++...+|.+.+.++-++ +||...+.... +..+-.+. |      .+-++-+.+++.-.+.|+..|=
T Consensus       281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  281 DWYALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhhHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            3334555666 899999997777777666 34443333322 22222222 1      2345677788889999999988


Q ss_pred             c-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015136          130 G-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWI  170 (412)
Q Consensus       130 ~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  170 (412)
                      . .....+..+..|++++-.+-.+.......|...|..++..
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7 7777888899999999888888888888888877666543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.63  E-value=0.52  Score=43.45  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHh----hch
Q 015136          282 RTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDR----AGR  357 (412)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr----~gr  357 (412)
                      +..+......+...+.+-.-..+.+.|.+           ..|.+....+......-+.+++.+++.|..+||    +||
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-----------~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR  100 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-----------SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR  100 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-----------HcCCCcccccccccccccccceeccccccccccccccccc
Confidence            44455555556666666665666666653           346888888888888888999999999999999    687


Q ss_pred             hhHHHH-HHHHHHHHHHHHHh
Q 015136          358 KLSLTI-MLILVFICILPLAM  377 (412)
Q Consensus       358 r~~l~~-~~~~~~~~~~~l~~  377 (412)
                      |+..+. +....+++.+++.+
T Consensus       101 RRPfI~~~s~~i~~~l~Lig~  121 (498)
T KOG0637|consen  101 RRPFILAGSLLIAVSLFLIGY  121 (498)
T ss_pred             ccchHHHhhHHHHHHHhhhhh
Confidence            766654 44555566665554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.46  E-value=27  Score=33.25  Aligned_cols=68  Identities=18%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             HhhhcCcc-ccceeeeeeccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          123 VGIGIGSG-PVFSAWFLEFVP-AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       123 ~G~~~g~~-~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      .|+..... ..--..+.|.+| +++|...+|-+....++..++..++++.+.+.+||.....+.-++.++
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44444443 333356667776 456888899988888888877777778999999999888776655554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=85.02  E-value=17  Score=33.17  Aligned_cols=162  Identities=9%  Similarity=0.005  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH--
Q 015136           28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPS-AESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG--  104 (412)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~--  104 (412)
                      +.+..+++....+.-+.......++.+++-+.- .++.-.-.-.....+..++.|...|+..|+|++.....+.=++.  
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v  109 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV  109 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence            334566666666666777777777777664332 22322333344556777888999999999998877655443322  


Q ss_pred             ----HHhhcc------hhHHHHHHHHHH----HhhhcCccccceee--eeec----ccccchhhHH---HHHHHHHHHHH
Q 015136          105 ----LLSAFS------PNYISLVTLRGL----VGIGIGSGPVFSAW--FLEF----VPAAKRGMWM---VIFSTFWTLGS  161 (412)
Q Consensus       105 ----~~~~~~------~~~~~~~~~r~l----~G~~~g~~~~~~~~--i~~~----~~~~~r~~~~---~~~~~~~~~g~  161 (412)
                          ++..+.      .+.+.+....++    ..++.-. ......  -.||    ...+.+....   +.....-..-.
T Consensus       110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~La-s~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn  188 (503)
T KOG2601|consen  110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLA-SLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTN  188 (503)
T ss_pred             HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHH-HhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhh
Confidence                222222      244443333322    2222111 111111  1122    2334444443   55555566667


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015136          162 IFEAALAWIVMITLNWRWLLALSSIPSFA  190 (412)
Q Consensus       162 ~~~~~~~~~l~~~~~w~~~~~~~~~~~~~  190 (412)
                      .+.|.+.+.+....+-|..-.+.+..+++
T Consensus       189 ~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  189 LLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             chhhhhhcccceeechhhhhhhhHHHHHH
Confidence            89999999998887777755555444444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=82.26  E-value=9.9  Score=35.20  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=66.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-cccee
Q 015136           59 PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFL--GIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSA  135 (412)
Q Consensus        59 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~  135 (412)
                      ..--|.+-++..+..+++++..|++..++.+-.-+.  ...++.+...++++..+|+|..+++-++.+...-.. +.+..
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334488889999999999999999988877754433  444555566677788899999888887776665554 55444


Q ss_pred             eeeecccccchhhHHHHHH
Q 015136          136 WFLEFVPAAKRGMWMVIFS  154 (412)
Q Consensus       136 ~i~~~~~~~~r~~~~~~~~  154 (412)
                      -++.....++-|...|+..
T Consensus       364 qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  364 QIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHHhccccceeeeeeeHH
Confidence            4554444555555555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		4e-09

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 45/232 (19%)
Query: 25  LVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFA---GNLVGVYLWG 81
           L+F Y   AV +  +E +   F+ P   SE     +A SLL   V +   G ++G  L G
Sbjct: 22  LLFGY-DTAVISGTVESLNTVFVAPQNLSE----SAANSLLGFCVASALIGCIIGGALGG 76
Query: 82  LLSDNYGRKKGFLGIAMI---TSGIGL------LSAFSPNYISLVTLRGLV--------- 123
             S+ +GR+   L IA +    SG+G        ++ +P+    V L G V         
Sbjct: 77  YCSNRFGRRDS-LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135
Query: 124 -GIGIGSGPVFSAWFL-EFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIV---------- 171
            GIG+G   + S  ++ E  PA  RG  +V F+ F     IF   L + V          
Sbjct: 136 GGIGVGLASMLSPMYIAELAPAHIRGK-LVSFNQF---AIIFGQLLVYCVNYFIARSGDA 191
Query: 172 --MITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKI 221
             + T  WR++ A   IP+   L+L    PESPR+L  +G+  +A  IL KI
Sbjct: 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 55/421 (13%), Positives = 117/421 (27%), Gaps = 80/421 (19%)

Query: 6   HRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLL 65
           H+  +  A     + + ++ +F        A  +     +   P +  E G S       
Sbjct: 9   HKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFA 67

Query: 66  STVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGI-----GLLSAFSPNYISLVTLR 120
            + +        ++ G +SD    +  FL   +I +       G +   + +   +  L 
Sbjct: 68  LSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126

Query: 121 GLVGIGIGSGP-----VFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL 175
            L G   G G          W+       +RG  + +++    +G      L  + M   
Sbjct: 127 FLCGWFQGMGWPPCGRTMVHWW----SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182

Query: 176 N-WRWLL----ALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLP 230
           N W   L      + + +     +    P+S                      L   +  
Sbjct: 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCG--------------------LPPIEEY 222

Query: 231 NGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWML 290
                 D   + ++EL                            +  ++L+      W +
Sbjct: 223 KNDYPDDYNEKAEQELTAK-------------------QIFMQYVLPNKLL------WYI 257

Query: 291 FFGNSFTYYGIILMTSKLSS--TQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLA 348
              N F Y     +     +   + K         ++  SS    ++      +PG +L 
Sbjct: 258 AIANVFVYLLRYGILDWSPTYLKEVK-------HFALDKSSWAYFLYE--YAGIPGTLLC 308

Query: 349 GIIVD---RAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIF 405
           G + D   R  R  +    + LV I  +   M  +      ++    +       +  I 
Sbjct: 309 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 368

Query: 406 T 406
            
Sbjct: 369 L 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 69/418 (16%), Positives = 120/418 (28%), Gaps = 125/418 (29%)

Query: 43  ILSFIGPAVKSEWG---VSPSAESLLST-----VVFAGN-LVGVY--LWGLLSDNYGRKK 91
           ILS    A    +    V    +S+LS      ++ + + + G     W LLS      +
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 92  GFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSGPVFSAWFLEFV-PAAKRGMWM 150
            F+                 NY  L+                S    E   P+    M++
Sbjct: 81  KFVE-----------EVLRINYKFLM----------------SPIKTEQRQPSMMTRMYI 113

Query: 151 VIFSTFWTLGSIFEAALAWIV--MITLNWRWLLALSSIPSFAVLLLY--------SLAPE 200
                 +    +F       +   + L  + LL L    +   +L+          +A +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKN---VLIDGVLGSGKTWVALD 169

Query: 201 SPR-------------YLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELA 247
                           +LN+         +L+ +  L     PN       TSR D    
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNW------TSRSDHSSN 222

Query: 248 PPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK 307
                  + +   R+ K K   +  L+L     V+           N+F     IL+T++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNA---KAW---NAFNLSCKILLTTR 273

Query: 308 LSS--TQSKCGTTLTVSQSMHDSSLY----LSVFLASLG----ELPG-------LVLAGI 350
                      TT  +S   H  +L      S+ L  L     +LP          L+ I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 351 ---IVDRAGR----------KLSLTIMLILVFICILP----------LAMLQSNILIT 385
              I D              KL+    +I   + +L           L++   +  I 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 49  PAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKK---GFLGIAMITSGIGL 105
             +  +  V   A   +         V    +G +SD  GR+      + I M+ +   L
Sbjct: 24  ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT---L 80

Query: 106 LSAFSPNYISLVTLRGLVGIGIGSGPVFS 134
           ++  + +   L+    + G+G G G V +
Sbjct: 81  VAVTTSSLTVLIAASAMQGMGTGVGGVMA 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.91
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.41
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.31
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.12
2xut_A	524	Proton/peptide symporter family protein; transport	98.82

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=7e-36  Score=283.56  Aligned_cols=354  Identities=20%  Similarity=0.253  Sum_probs=258.3

Q ss_pred             ccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 015136           21 KFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGV--------SPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKG   92 (412)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~   92 (412)
                      ++.+.+.++.+++.+..++|...++...|.+.++++.        +.++.|++.+++.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4556666777888899999999999999999888753        23567899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh------------------cchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHH
Q 015136           93 FLGIAMITSGIGLLSA------------------FSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIF  153 (412)
Q Consensus        93 ~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~  153 (412)
                      ++++.+++.++.++++                  .++|++.++++|+++|++.|.. +....+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999887                  4789999999999999999998 88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhh
Q 015136          154 STFWTLGSIFEAALAWIVMIT--------LNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLN  225 (412)
Q Consensus       154 ~~~~~~g~~~~~~~~~~l~~~--------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (412)
                      +.+..+|.++++.++..+...        .+||+.+.+..++.++..+..++.||+|+|+..+++.+++++..++....+
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999999988877643        348888888888888888888899999999999999999988877765433


Q ss_pred             CCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015136          226 KAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMT  305 (412)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (412)
                      ....+..+                        .+....+.+.. ......++.+  +.........+......+....+.
T Consensus       248 ~~~~~~~~------------------------~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  300 (491)
T 4gc0_A          248 LATQAVQE------------------------IKHSLDHGRKT-GGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYYA  300 (491)
T ss_dssp             HHHHHHHH------------------------HHHHHHHHHHH-TTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhHHHHHH------------------------HHHHHHhhhhh-hhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhcc
Confidence            21100000                        00000000000 0111112221  112222222222333334444444


Q ss_pred             hcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh----hhh
Q 015136          306 SKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAML----QSN  381 (412)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~----~~~  381 (412)
                      +.+.+.           .+.+...........++..+++.++++++.||+|||+.++.+.....++.+.+...    ...
T Consensus       301 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~  369 (491)
T 4gc0_A          301 PEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG  369 (491)
T ss_dssp             HHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch
Confidence            444422           23555566667778888999999999999999999999999988888887766541    112


Q ss_pred             HH-HHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          382 IL-ITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       382 ~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .. .....+....+..+..++.+.+.+|++|+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt  401 (491)
T 4gc0_A          370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN  401 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence            22 22223333334455668899999999996

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=6.8e-35  Score=272.69  Aligned_cols=325  Identities=13%  Similarity=0.063  Sum_probs=256.9

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      +++++..+..+++..+..+++....++..|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||++++++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            44556667777788888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh---hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 015136          100 TSGIGLLS---AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVM-IT  174 (412)
Q Consensus       100 ~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~  174 (412)
                      .+++.+++   .++++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..+++.+++.+. +.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998   88899999999999999999998 888999999999999999999999999999999999999998 55


Q ss_pred             CC-------------------------hHHHHHHHHHHHHHHHHHHHhc--cCCchhhhhcCChHHHHHHHHHHHHhhCC
Q 015136          175 LN-------------------------WRWLLALSSIPSFAVLLLYSLA--PESPRYLNVKGRTTEARNILDKIALLNKA  227 (412)
Q Consensus       175 ~~-------------------------w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
                      .+                         ||+.|++.+++.++..+..++.  ||+++..   +++                
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~----------------  241 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD----------------  241 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC----------------
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc----------------
Confidence            54                         9999988877666554444443  3322100   000                


Q ss_pred             CCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015136          228 KLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSK  307 (412)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (412)
                                            +++             ++...+++++++++..+...   ...+.....++....+.+.
T Consensus       242 ----------------------~~~-------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  283 (438)
T 3o7q_A          242 ----------------------AKQ-------------GSFSASLSRLARIRHWRWAV---LAQFCYVGAQTACWSYLIR  283 (438)
T ss_dssp             ----------------------SST-------------TSHHHHHHHHTTCSHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------ccc-------------cchhhhHHHHHhChHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence                                  000             00001444555554443333   3333344455566666676


Q ss_pred             c-cccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015136          308 L-SSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITG  386 (412)
Q Consensus       308 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~  386 (412)
                      | .++.          .|.++.+.+.......++.++++++.|++.||+|||+.+..+.++.+++.+++.+.++.+. ..
T Consensus       284 ~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  352 (438)
T 3o7q_A          284 YAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LI  352 (438)
T ss_dssp             HHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-HH
T ss_pred             Hhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-HH
Confidence            6 5332          3688889999999999999999999999999999999999999988888887777665544 34


Q ss_pred             HHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          387 LLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      ..++.+++.+..++...++..|.+|+
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~~~  378 (438)
T 3o7q_A          353 ALTLCSAFMSIQYPTIFSLGIKNLGQ  378 (438)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            45677788888899999998888874

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=7e-35  Score=273.61  Aligned_cols=341  Identities=13%  Similarity=0.157  Sum_probs=263.8

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++.++..+..+++..+....+...+++..|.+.+++ .+.++.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~  101 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence            345677788888888999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc----chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136          100 TSGIGLLSAF----SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT  174 (412)
Q Consensus       100 ~~i~~~~~~~----~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  174 (412)
                      .+++.+++++    +++++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999    999999999999999999988 88899999999999999999999999999999999999998888


Q ss_pred             CC-hHHHHHHHHHHHHHH-HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          175 LN-WRWLLALSSIPSFAV-LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       175 ~~-w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                      .| ||+.|++.+++.++. ++.++++||+|+....+++++.                .     .+.+++.+     .+.+
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-----~~~~~~~~-----~~~~  235 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------------K-----NDYPDDYN-----EKAE  235 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------------C-----CC---------------
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------------c-----ccccccch-----hhhh
Confidence            98 999999998877765 4456778887653211110000                0     00000000     0000


Q ss_pred             Ccccchhhhhhhhcccccc--hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcch
Q 015136          253 PLLTSSRIRITKLKSGFSS--FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSL  330 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (412)
                                  .+.+.++  .+++++++.   ++...+..+.....+++...+.|.+.++.          .|.++.+.
T Consensus       236 ------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~  290 (451)
T 1pw4_A          236 ------------QELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKS  290 (451)
T ss_dssp             ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHH
T ss_pred             ------------cccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHH
Confidence                        0000001  233444333   33444444555566667777788777442          46888889


Q ss_pred             HHHHHHHHcchhhHHHHHHHHHHhh--chhhHHHHHHHHHH-HHHHHHHhh--hhhHHHHHHHHHHHHHHhhHhHHHHhh
Q 015136          331 YLSVFLASLGELPGLVLAGIIVDRA--GRKLSLTIMLILVF-ICILPLAML--QSNILITGLLVGARMFAFGAFTIACIF  405 (412)
Q Consensus       331 ~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~l~~~~~~~~-~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (412)
                      +.......++.++++++.|++.||+  +||+.+..+..+.. ++.+.+.+.  .+.+...+..++.+++.+...+....+
T Consensus       291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  370 (451)
T 1pw4_A          291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH  370 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            9999999999999999999999999  99998888777766 565555554  245556666777888888888888899


Q ss_pred             ccCCCCC
Q 015136          406 TPEQLGW  412 (412)
Q Consensus       406 ~~e~~P~  412 (412)
                      ..|.+|+
T Consensus       371 ~~~~~~~  377 (451)
T 1pw4_A          371 ALELAPK  377 (451)
T ss_dssp             HHHTSCT
T ss_pred             HHHHhch
Confidence            9998885

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=5.3e-31  Score=241.20  Aligned_cols=312  Identities=13%  Similarity=0.066  Sum_probs=238.1

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      ..+++..+....+...+.+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566677788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 015136          108 AFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSI  186 (412)
Q Consensus       108 ~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~  186 (412)
                      .++++++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV  162 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999999988 88889999999999999999999999999999999999999888899999998887


Q ss_pred             HHHHHHH-HHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhh
Q 015136          187 PSFAVLL-LYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKL  265 (412)
Q Consensus       187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
                      ..++..+ ..+++||+++...++                                      +  +               
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~--~---------------  187 (375)
T 2gfp_A          163 LCAGVTFSMARWMPETRPVDAPR--------------------------------------T--R---------------  187 (375)
T ss_dssp             HHHHHHCCCCCSSCCCSTTTCCC--------------------------------------C--C---------------
T ss_pred             HHHHHHHHHHHHCcccCCCCccc--------------------------------------c--c---------------
Confidence            7766654 445566654310000                                      0  0               


Q ss_pred             cccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHH
Q 015136          266 KSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGL  345 (412)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  345 (412)
                        ..++++++++++.   .+......+......+....+.|.+.++.          .|.++.+.+.......++.++++
T Consensus       188 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~g~~~~~~~~~~~~~~  252 (375)
T 2gfp_A          188 --LLTSYKTLFGNSG---FNCYLLMLIGGLAGIAAFEACSGVLMGAV----------LGLSSMTVSILFILPIPAAFFGA  252 (375)
T ss_dssp             --TTTCSTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSCSSHHH----------HHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             --HHHHHHHHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHHH
Confidence              0002333343332   33333444445556666667777666432          46777888999999999999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHH-HHHHHH--HHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCC
Q 015136          346 VLAGIIVDRAGRKLSLTIMLIL-VFICIL--PLAM--LQSNILITGLLVGARMFAFGAFTIACIFTPEQLG  411 (412)
Q Consensus       346 ~~~g~l~dr~grr~~l~~~~~~-~~~~~~--~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P  411 (412)
                      ++.+++.||.+++.  ..+..+ ...+..  .+..  .++.+...+..++.+++.+...+...++..|.+|
T Consensus       253 ~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  321 (375)
T 2gfp_A          253 WFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP  321 (375)
T ss_dssp             HHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            99999999998832  222222 222222  2222  2244445556667777777778888888877665

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=6e-29  Score=235.82  Aligned_cols=356  Identities=11%  Similarity=-0.026  Sum_probs=221.1

Q ss_pred             HHHHHHhhHHHhhh-hhhhhhhhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHH
Q 015136           32 LAVFAEAMEIMILS-FIGPAVKSE-----WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDN-YGRKKGFLGIAMITSGIG  104 (412)
Q Consensus        32 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~  104 (412)
                      +..+...+...... ...+.+.++     +|.|.++.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~   99 (491)
T 4aps_A           20 MTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGH   99 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            33444444444443 334445555     99999999999999999999999999999999 899999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136          105 LLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAK--RGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       105 ~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      +++++++|++.++++|++.|++.+.. +...++++|++|+++  |+.++++++.+.++|..++|.+++.+.++.|||+.|
T Consensus       100 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f  179 (491)
T 4aps_A          100 IVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF  179 (491)
T ss_dssp             HHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999988 888999999999988  777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc-cCCchh----hhhcCChHHHHHHHHH-------------HHHhhCCCCCCCccccccCCCCC
Q 015136          182 ALSSIPSFAVLLLYSLA-PESPRY----LNVKGRTTEARNILDK-------------IALLNKAKLPNGMLVSDATSRPD  243 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  243 (412)
                      ++.++..++..+..++. ++..+.    ..++.+.++.++..+.             .....+.... +....... ...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~  257 (491)
T 4aps_A          180 SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT-IVA  257 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh-HHH
Confidence            99877666554443322 221110    0011112222222111             0001110000 00000000 000


Q ss_pred             cccCCCCCCCcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Q 015136          244 EELAPPDNTPLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQ  323 (412)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (412)
                               .... ........+....+..+   ++............+.....+.......+.+..+.          .
T Consensus       258 ---------~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  314 (491)
T 4aps_A          258 ---------IAIP-VFYFAWMISSVKVTSTE---HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER----------V  314 (491)
T ss_dssp             ---------HHHH-HHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS----------C
T ss_pred             ---------HHHH-HHHHHHHhhcccccHHH---HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH----------h
Confidence                     0000 00000000000000000   00001111122222222223333333344443222          2


Q ss_pred             CCCCcchHHHHHHHHcchhhHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHHHHHhhh---------hhHHHHHHHH
Q 015136          324 SMHDSSLYLSVFLASLGELPGLVLAGIIVDRAGRKLSLT-----IMLILVFICILPLAMLQ---------SNILITGLLV  389 (412)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~l~-----~~~~~~~~~~~~l~~~~---------~~~~~~~~~~  389 (412)
                      +.+....+.......++.+++.++.+++.||++||+...     .+..+.+++.+.+....         +.+......+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4aps_A          315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA  394 (491)
T ss_dssp             CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred             ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence            344456677777788888899999999999999886544     66666666666555422         4455666677


Q ss_pred             HHHHHHhhHhHHHHhhccCCCCC
Q 015136          390 GARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +.+++.+...+..++++.|.+|+
T Consensus       395 l~g~~~~~~~~~~~~~~~~~~p~  417 (491)
T 4aps_A          395 LVILGEMLISPVGLSVTTKLAPK  417 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCH
Confidence            77888777788889999998885

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=4.7e-25  Score=204.35  Aligned_cols=314  Identities=15%  Similarity=0.075  Sum_probs=190.8

Q ss_pred             HHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH---HHhhcchhHH-
Q 015136           40 EIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIG---LLSAFSPNYI-  114 (412)
Q Consensus        40 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~~-  114 (412)
                      ......+..|. +.+++|.|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.   ....+.+... 
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555 556799999999999999999999999999999999999999998888775532   1112222211 


Q ss_pred             HHHHHHHHHhhhcCcc-ccceeeeeecccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015136          115 SLVTLRGLVGIGIGSG-PVFSAWFLEFVPA--AKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAV  191 (412)
Q Consensus       115 ~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~  191 (412)
                      .+...+.+.|++.+.. +.....+.++.++  ++|+...+.......+|..++|.+++.+.+ .+||+.|++.++..++.
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~  180 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL  180 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence            2344566666665554 3333334444433  456777888888889999999999999887 58999998877665444


Q ss_pred             HHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhhhhhcccccc
Q 015136          192 LLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRITKLKSGFSS  271 (412)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (412)
                      .+..++.+|+++.   +.+.+                            +.+++ +  +++              .+..+
T Consensus       181 ~~~~~~~~~~~~~---~~~~~----------------------------~~~~~-~--~~~--------------~~~~~  212 (417)
T 2cfq_A          181 AVLLFFAKTDAPS---SATVA----------------------------NAVGA-N--HSA--------------FSLKL  212 (417)
T ss_dssp             HHHSCSSCCCCSC---SSCSS----------------------------SSSSS-C--CCC--------------CCHHH
T ss_pred             HHHHHHcCccccc---ccccc----------------------------ccccc-c--ccc--------------ccHHH
Confidence            4444444433210   00000                            00000 0  000              00012


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcchhhHHHHHHHH
Q 015136          272 FLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGELPGLVLAGII  351 (412)
Q Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l  351 (412)
                      ++++++++..+......   +.....++....+.|.|..+..       +..+.+....+.......++.+++.++.|++
T Consensus       213 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l  282 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYV---IGVSCTYDVFDQQFANFFTSFF-------ATGEQGTRVFGYVTTMGELLNASIMFFAPLI  282 (417)
T ss_dssp             HHHHTTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTS-------SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------hccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444333322221   1112222233233444432210       0011234455677777778889999999999


Q ss_pred             HHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          352 VDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       352 ~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      +||+|||+.+..+..+.+++.+.+.+.++.+...+...+.+++.....+....+++|.+|+
T Consensus       283 ~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  343 (417)
T 2cfq_A          283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            9999999999988888888777766655555555554555555555556667888888873

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.91  E-value=9.4e-24  Score=201.75  Aligned_cols=163  Identities=13%  Similarity=0.152  Sum_probs=140.9

Q ss_pred             HHHhhHHHhhhh-hhhhhhhhcC------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHH
Q 015136           35 FAEAMEIMILSF-IGPAVKSEWG------VSPSAESLLSTVVFAGNLVGVYLWGLLSDNY-GRKKGFLGIAMITSGIGLL  106 (412)
Q Consensus        35 ~~~~~~~~~~~~-~~~~~~~~~~------~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~  106 (412)
                      +......+.... ..+.+.+++|      .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~  101 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF  101 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            333333333333 3445677899      9999999999999999999999999999999 9999999999999999999


Q ss_pred             hhcch-hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHH---HHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 015136          107 SAFSP-NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVI---FSTFWTLGSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       107 ~~~~~-~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      .++++ +++.+++.|++.|++.+.. +...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+..+||+.|
T Consensus       102 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          102 LAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            99998 9999999999999999998 8889999999999999877666   89999999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 015136          182 ALSSIPSFAVLLLYSL  197 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~  197 (412)
                      ++.+++.++..+..++
T Consensus       182 ~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          182 GIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988776665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=1.9e-14  Score=134.38  Aligned_cols=169  Identities=15%  Similarity=0.053  Sum_probs=140.4

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHH-HHHH
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNY--GRKKGFLGIAMITS-GIGL  105 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~  105 (412)
                      ..+..+.............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3344444455555566667777666 899999999999999999999999999999999  99999988887776 6666


Q ss_pred             Hhhcc--hhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHH
Q 015136          106 LSAFS--PNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNWRWLL  181 (412)
Q Consensus       106 ~~~~~--~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~  181 (412)
                      +..+.  .+.+.+.+..++.|++.+.. +....++.|..|+++|+++.|+.+....+ |..++|.+.+.+.+..||+..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  416 (451)
T 1pw4_A          337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF  416 (451)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            66665  36777888888999988877 77778999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 015136          182 ALSSIPSFAVLLLYSLA  198 (412)
Q Consensus       182 ~~~~~~~~~~~~~~~~~  198 (412)
                      ++.+++.++..+..++.
T Consensus       417 ~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          417 MVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888777665554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.54  E-value=2.2e-14  Score=132.62  Aligned_cols=144  Identities=15%  Similarity=0.085  Sum_probs=120.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhcCcc-ccceeee
Q 015136           59 PSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVGIGIGSG-PVFSAWF  137 (412)
Q Consensus        59 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~-~~~~~~i  137 (412)
                      ....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+.. +....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678888888899999999999999999999999999888888877777788888888888888876655 5667899


Q ss_pred             eecccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHhccCCc
Q 015136          138 LEFVPAAKRGMWMVI-FSTFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-YSLAPESP  202 (412)
Q Consensus       138 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  202 (412)
                      .|.+|++.||++.++ .+....+|..++|.+++.+.++.|++..|.+.+++.++..+. +...+|++
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999999998 588888999999999999999889999998888777766554 34455544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=7.4e-13  Score=123.13  Aligned_cols=151  Identities=12%  Similarity=0.052  Sum_probs=123.8

Q ss_pred             HHhhhhhhhhh-hhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015136           41 IMILSFIGPAV-KSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVT  118 (412)
Q Consensus        41 ~~~~~~~~~~~-~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  118 (412)
                      ........|.+ .++ +|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+..
T Consensus       274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T 3o7q_A          274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA  353 (438)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            34444455555 444 5999999999999999999999999999999999999999999999999888888887766554


Q ss_pred             HHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Q 015136          119 LRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLN-WRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       119 ~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~~~~~~~~~~~~~~~  194 (412)
                      . ++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..+.
T Consensus       354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            4 7888888887 88888888999866 888888877 566999999999999999888 999988766554444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.41  E-value=3e-12  Score=120.95  Aligned_cols=175  Identities=19%  Similarity=0.164  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHh
Q 015136           28 AYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLS  107 (412)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  107 (412)
                      .......+.............+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence            33344444445555666677888999999888888888888889999999999999999999999999888888777655


Q ss_pred             hcc-----hhHHH-HHHHHHHHhhhcCccccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh------cC
Q 015136          108 AFS-----PNYIS-LVTLRGLVGIGIGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMI------TL  175 (412)
Q Consensus       108 ~~~-----~~~~~-~~~~r~l~G~~~g~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~  175 (412)
                      +..     ++... ..+.-+..+++.+..++...+.+|.+|.+.|++++|+......+|..+++.+.+.+.+      ..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~  439 (491)
T 4gc0_A          360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF  439 (491)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            432     12222 2222333444444446777899999999999999999999999999998887766543      34


Q ss_pred             ChHHHHHHHHHHHHHH-HHHHHhccCCc
Q 015136          176 NWRWLLALSSIPSFAV-LLLYSLAPESP  202 (412)
Q Consensus       176 ~w~~~~~~~~~~~~~~-~~~~~~~~~~~  202 (412)
                      ++.+.|++.++++++. ++.++++||++
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence            5666777777776666 44578899984

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.31  E-value=2.9e-12  Score=121.03  Aligned_cols=155  Identities=15%  Similarity=-0.014  Sum_probs=120.6

Q ss_pred             Hhhhhhhhhhh-hhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-----HHHHHHHHHHHHhhcch----
Q 015136           42 MILSFIGPAVK-SEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFL-----GIAMITSGIGLLSAFSP----  111 (412)
Q Consensus        42 ~~~~~~~~~~~-~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~----  111 (412)
                      .......|.+. +.++.+..+.++..+...++..++.++.+++.||+|||+...     .+.++.+++.++.....    
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG  379 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444455444 446777678888899999999999999999999999987655     77777777776665533    


Q ss_pred             -----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015136          112 -----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLALSS  185 (412)
Q Consensus       112 -----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~  185 (412)
                           +.+.+.+..++.|++.+.. +....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+ .++...|.+.+
T Consensus       380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~  458 (491)
T 4aps_A          380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG  458 (491)
T ss_dssp             CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence                 6777788889999999887 8888999999999999999999999999999999999888766 46677777777


Q ss_pred             HHHHHHHHHHHh
Q 015136          186 IPSFAVLLLYSL  197 (412)
Q Consensus       186 ~~~~~~~~~~~~  197 (412)
                      +..++..+..++
T Consensus       459 ~~~~~~~~~~~~  470 (491)
T 4aps_A          459 LGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.12  E-value=1.1e-11  Score=112.79  Aligned_cols=153  Identities=16%  Similarity=0.114  Sum_probs=116.1

Q ss_pred             HHHHHHHHhhHHHhhhhhhhhhhhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-HHHHHHH-
Q 015136           30 AGLAVFAEAMEIMILSFIGPAVKSE-WGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI-TSGIGLL-  106 (412)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~-  106 (412)
                      ..+..+.............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|+|  +..+..+ ...+... 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~  281 (375)
T 2gfp_A          204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMW  281 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            3344444445555566666766555 899999999999999999999999999999999883  3333333 2222221 


Q ss_pred             -hhc--chhHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 015136          107 -SAF--SPNYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLA  182 (412)
Q Consensus       107 -~~~--~~~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~  182 (412)
                       ...  .++.+.+.+..++.|++.+.. +...+++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~  360 (375)
T 2gfp_A          282 IPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLL  360 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence             111  236677778888999998887 888899999998 899999999999999999999999999988777887776


Q ss_pred             HHH
Q 015136          183 LSS  185 (412)
Q Consensus       183 ~~~  185 (412)
                      +.+
T Consensus       361 ~~~  363 (375)
T 2gfp_A          361 MTL  363 (375)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.82  E-value=2.2e-09  Score=102.07  Aligned_cols=135  Identities=9%  Similarity=0.009  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH----hhhcc----hhHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHH
Q 015136           61 AESLLSTVVFAGNLVGVYLWGLLS----DNYGR----KKGFLGIAMITSGIGLLSAFS---------PNYISLVTLRGLV  123 (412)
Q Consensus        61 ~~~~~~s~~~~~~~i~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~  123 (412)
                      ..+++.+...++..++.++.+++.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666667777777777664    55543    356677888888887776653         3677778888999


Q ss_pred             hhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--Ch---------HHHHHHHHHHHHHH
Q 015136          124 GIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITL--NW---------RWLLALSSIPSFAV  191 (412)
Q Consensus       124 G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~w---------~~~~~~~~~~~~~~  191 (412)
                      |++.+.. +...+++.|..|+++||+++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+.+.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            9999887 888899999999999999999999999999999999999887632  23         33366666555555


Q ss_pred             HHHH
Q 015136          192 LLLY  195 (412)
Q Consensus       192 ~~~~  195 (412)
                      .+..
T Consensus       496 ~~~~  499 (524)
T 2xut_A          496 AIVF  499 (524)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	8e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 25/197 (12%), Positives = 61/197 (30%), Gaps = 6/197 (3%)

Query: 6   HRYTVDEALTSAGFGKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLL 65
           H+  +  A     + + ++ +F        A  +     +   P +  E G S       
Sbjct: 6   HKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFA 64

Query: 66  STVVFAGNLVGVYLWGLLSDNYGRKK----GFLGIAMITSGIGLLSAFSPNYISLVTLRG 121
            + +        ++ G +SD    +     G +  A +   +G +   + +   +  L  
Sbjct: 65  LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 124

Query: 122 LVGIG-IGSGPVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWL 180
           L G       P      + +    +RG  + +++    +G      L  + M   N    
Sbjct: 125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA 184

Query: 181 LALSSIPSFAVLLLYSL 197
                     ++ L++ 
Sbjct: 185 ALYMPAFCAILVALFAF 201

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 8e-06
 Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 7/186 (3%)

Query: 42  MILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS 101
               F    +     +S S   ++   +   +L+   L+GLLSD  G +K  L I     
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 102 GIGLLSAFSPNYISLVTLRGLVGIGIGSG-------PVFSAWFLEFVPAAKRGMWMVIFS 154
            +            L     +  I  G            +        + +         
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 155 TFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLLYSLAPESPRYLNVKGRTTEA 214
            F  +G    A++  I+    N       S       +LL+    ++P    V       
Sbjct: 145 MFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN 204

Query: 215 RNILDK 220
            +    
Sbjct: 205 HSAFSL 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.63
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-33  Score=258.33  Aligned_cols=343  Identities=12%  Similarity=0.132  Sum_probs=247.8

Q ss_pred             CccHHHHHHHHHHHHHHHhhHHHhhhhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015136           20 GKFQYLVFAYAGLAVFAEAMEIMILSFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMI   99 (412)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~   99 (412)
                      ++++|.++..++++++..+.+...++...|.+. |+|+|.++.|++.+++.+++.++++++|+++||+|||+++.++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            466888888889999999999888998888876 5899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcch----hHHHHHHHHHHHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015136          100 TSGIGLLSAFSP----NYISLVTLRGLVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTLGSIFEAALAWIVMIT  174 (412)
Q Consensus       100 ~~i~~~~~~~~~----~~~~~~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  174 (412)
                      .+++.+++++++    +++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            999998887664    7788999999999999988 88889999999999999999999999999999999998887664


Q ss_pred             -CChHHHHHHHHHHHHHHH-HHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCC
Q 015136          175 -LNWRWLLALSSIPSFAVL-LLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNT  252 (412)
Q Consensus       175 -~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (412)
                       .+||+.|++.+++.++.. +.+.+.+|+|+.......++.                         +++..++.. ++.+
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~~~  232 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------------------KNDYPDDYN-EKAE  232 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------------------CCC-----------
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-------------------------hhhcccchh-hccc
Confidence             579999999887777664 445556666542111110000                         000000000 0000


Q ss_pred             CcccchhhhhhhhcccccchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcchHH
Q 015136          253 PLLTSSRIRITKLKSGFSSFLLLFSSRLVRTTLLLWMLFFGNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYL  332 (412)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (412)
                      ++          ........+..++.+   ..+......++.....++...+.+.+..+.          .+.+..+.+.
T Consensus       233 ~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  289 (447)
T d1pw4a_         233 QE----------LTAKQIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDKSSW  289 (447)
T ss_dssp             -------------CCTHHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB----------SCCCHHHHHH
T ss_pred             cc----------cchhhHHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhcccc----------cccccchhhh
Confidence            00          000000222333333   233344444455556666677777666443          4688888999


Q ss_pred             HHHHHHcchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH---HHHh--hhhhHHHHHHHHHHHHHHhhHhHHHHhhcc
Q 015136          333 SVFLASLGELPGLVLAGIIVDRAGRKLSLTIMLILVFICIL---PLAM--LQSNILITGLLVGARMFAFGAFTIACIFTP  407 (412)
Q Consensus       333 ~~~~~~~~~~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~---~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (412)
                      ......+..+++.+++|++.||++|++..........+...   .+..  ..+.+...+..++.+++..+..+....+..
T Consensus       290 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  369 (447)
T d1pw4a_         290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL  369 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876544433332222222   2222  334555666677778888888888899999


Q ss_pred             CCCCC
Q 015136          408 EQLGW  412 (412)
Q Consensus       408 e~~P~  412 (412)
                      |.+|+
T Consensus       370 ~~~p~  374 (447)
T d1pw4a_         370 ELAPK  374 (447)
T ss_dssp             HTSCT
T ss_pred             HHcCH
Confidence            99885

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5e-24  Score=194.34  Aligned_cols=320  Identities=14%  Similarity=0.026  Sum_probs=208.4

Q ss_pred             HHHHHHhhHHHhhhhhhhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcc
Q 015136           32 LAVFAEAMEIMILSFIGPA-VKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFS  110 (412)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~  110 (412)
                      +..+...+......+..|. +.+++|.|++++|++.+++.++..+++++.|+++||+|||++++++..+..++..+....
T Consensus        14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~   93 (417)
T d1pv7a_          14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF   93 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555566666775 567799999999999999999999999999999999999999999999999888888777


Q ss_pred             hhHHHHH----HHHHHHhhhcCcc-ccceeeeeeccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 015136          111 PNYISLV----TLRGLVGIGIGSG-PVFSAWFLEFVP--AAKRGMWMVIFSTFWTLGSIFEAALAWIVMITLNWRWLLAL  183 (412)
Q Consensus       111 ~~~~~~~----~~r~l~G~~~g~~-~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~  183 (412)
                      .+.....    +.+.+.+.+.+.. ........+..+  .+++.+..+........+..+++.+++.+.+. +|+..+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  172 (417)
T d1pv7a_          94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWL  172 (417)
T ss_dssp             THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccc
Confidence            6655544    3344444444433 222222222222  23455677788888889999999999998875 45555544


Q ss_pred             HH-HHHHHHHHHHHhccCCchhhhhcCChHHHHHHHHHHHHhhCCCCCCCccccccCCCCCcccCCCCCCCcccchhhhh
Q 015136          184 SS-IPSFAVLLLYSLAPESPRYLNVKGRTTEARNILDKIALLNKAKLPNGMLVSDATSRPDEELAPPDNTPLLTSSRIRI  262 (412)
Q Consensus       184 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (412)
                      .. ...+...+..+..+|+++..   ++.++.++                               ..+.           
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------------------------~~~~-----------  207 (417)
T d1pv7a_         173 GSGCALILAVLLFFAKTDAPSSA---TVANAVGA-------------------------------NHSA-----------  207 (417)
T ss_dssp             HHHHHHHHHHHHHSSCCCSCSSS---CSSHHHHS-------------------------------CCCC-----------
T ss_pred             hhhHHHHHHHHHHHHhcccccch---hhhhhhhh-------------------------------hccc-----------
Confidence            44 44444455566666665421   11110000                               0000           


Q ss_pred             hhhcccccchhhccchhhHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccccccccccccccCCCCcchHHHHHHHHcch
Q 015136          263 TKLKSGFSSFLLLFSSRLVRTTLLLWMLFF-GNSFTYYGIILMTSKLSSTQSKCGTTLTVSQSMHDSSLYLSVFLASLGE  341 (412)
Q Consensus       263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (412)
                          .......+..+.+..+.......... ...........+.....           ...+.+....+.......++.
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  272 (417)
T d1pv7a_         208 ----FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF-----------ATGEQGTRVFGYVTTMGELLN  272 (417)
T ss_dssp             ----CCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-----------SCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccccccccccccccchhhhhHHHHHHHHhhhccccccccccc-----------cccccchhhhccccccccccc
Confidence                00001111122222222222222222 12222222222222221           122345556677777888889


Q ss_pred             hhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhccCCCCC
Q 015136          342 LPGLVLAGIIVDRAGRKLSLTIMLILVFICILPLAMLQSNILITGLLVGARMFAFGAFTIACIFTPEQLGW  412 (412)
Q Consensus       342 ~~g~~~~g~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~  412 (412)
                      .++..+.+++.||.++|+.+.++..+.+++.+.+.+.++.+...+..++.+++.+...+...++..|.+|+
T Consensus       273 ~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  343 (417)
T d1pv7a_         273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV  343 (417)
T ss_dssp             HHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred             ccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            99999999999999999999999999999999999888888888888888999999999999999998884

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=8.6e-16  Score=139.00  Aligned_cols=156  Identities=13%  Similarity=0.037  Sum_probs=134.0

Q ss_pred             hhhhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015136           45 SFIGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITSGIGLLSAFSPNYISLVTLRGLVG  124 (412)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G  124 (412)
                      ....+...++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM  323 (417)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHH
Confidence            33344444555566777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcc-ccceeeeeecccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-HHhccC
Q 015136          125 IGIGSG-PVFSAWFLEFVPAAKRGMWMVIF-STFWTLGSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL-YSLAPE  200 (412)
Q Consensus       125 ~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~  200 (412)
                      ++.+.. +...+++.|.+|+++|+++.++. +....+|..++|.+.+.+.++.||+..|++.+++.++..+. .+.+++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999988 88889999999999999999985 56678999999999999999999999999988777766444 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=6.4e-13  Score=121.51  Aligned_cols=148  Identities=16%  Similarity=0.038  Sum_probs=115.8

Q ss_pred             hhhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHHHhh--cchhHHHHHHHHH
Q 015136           47 IGPAVKSEWGVSPSAESLLSTVVFAGNLVGVYLWGLLSDNYGRKKGFLGIAMITS---GIGLLSA--FSPNYISLVTLRG  121 (412)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~--~~~~~~~~~~~r~  121 (412)
                      ....+.+.++.+..+.++..+...++..++.++.|++.||++||+..........   ++.....  ...+.+...+.-+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (447)
T d1pw4a_         272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  351 (447)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3445567789999999999999999999999999999999998764433333222   2222222  2456777778888


Q ss_pred             HHhhhcCcc-ccceeeeeecccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015136          122 LVGIGIGSG-PVFSAWFLEFVPAAKRGMWMVIFSTFWTL-GSIFEAALAWIVMITLNWRWLLALSSIPSFAVLLL  194 (412)
Q Consensus       122 l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~w~~~~~~~~~~~~~~~~~  194 (412)
                      +.|++.+.. +....+..|.+|++.||++.|+.+....+ |..++|.+.+.+.++.||+..|++.+...++..++
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            889888876 77778899999999999999998887776 56778999999999999999998887766655444