Citrus Sinensis ID: 015140

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MKPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVLDNGSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
ccccccccccEEEEEEEEEEcccccEEEEEcccccccccccccccEEcccccEEEEEEEcccEEEEEEEEEEccccEEEcccccEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEccccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHEEEEEcccEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHccccccc
cccccccccEEEEEEEEEEEEEcccEEEEEEccHHHcccccccccccccccEEEEEEcccccEEEEEEEEEccccEEEEEcccccEEEEcccccEEEEEEccccccccccHHHHccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHc
mkpksghggnvrisfrLDHQVEFGEHVVILGSTkelgswkknvpmkwsesgwlcdlefkggesieYKFVIVRNDkskaweagdnrilklpkggsfeIVCHWNKTGEAVDLLHLVEDvldngsvvtdaapdallevgtspfvgqwqgksasfmrADDHWNREMerkwdtsglqgLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWintgkipcfedgghhrpnrhAEISRLIFRELEQiscrkdaspqEVLVIRKihpclpsfkaeftasvpltrirdiahrndiphdLKLEIKHTIQNklhrnagpedLVATEAMLAKItknpgeysESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
mkpksghggnvRISFRLDHQVEFGEHVVIlgstkelgswkknvpmKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVLDNGSVVTDAAPDALLEVGtspfvgqwqgksaSFMRADDHWNREMErkwdtsglqgltlklvegdqrarnWWRKLEVVRELIvenlqsderLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRkihpclpsfkaeftasvPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
MKPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAvdllhlvedvldNGSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
**********VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVLDNGSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLA****************ALSSFLECKKVSHCFLLGCIQGLKMWL*
*********NVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAV*********************************************************WDTSGLQGLTLKLVEGDQRARNWWRKLEVVRE*************ALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQ******************FLECKKVSHCFLLGCIQGLKMWLM
********GNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVLDNGSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
*******GGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEA******************************************S************ERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
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MKPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVLDNGSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFEDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKKVSHCFLLGCIQGLKMWLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q6ZY51 1196 Phosphoglucan, water diki yes no 0.953 0.328 0.663 1e-162
Q2QTC2 1206 Phosphoglucan, water diki yes no 0.932 0.318 0.608 1e-142
P22832639 Glucoamylase OS=Aspergill N/A no 0.199 0.128 0.314 4e-07
P23176639 Glucoamylase I OS=Aspergi N/A no 0.199 0.128 0.314 4e-07
P69328640 Glucoamylase OS=Aspergill yes no 0.199 0.128 0.303 7e-07
P69327640 Glucoamylase OS=Aspergill N/A no 0.199 0.128 0.303 7e-07
O30565692 Cyclomaltodextrin glucano yes no 0.228 0.135 0.264 1e-06
P19584551 Thermophilic beta-amylase N/A no 0.211 0.157 0.259 4e-06
P09121712 Cyclomaltodextrin glucano N/A no 0.225 0.130 0.274 6e-06
P05618713 Cyclomaltodextrin glucano N/A no 0.225 0.130 0.274 7e-06
>sp|Q6ZY51|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1 Back     alignment and function desciption
 Score =  570 bits (1469), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/404 (66%), Positives = 324/404 (80%), Gaps = 11/404 (2%)

Query: 2   KPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGG 61
           K K G G  VR++ RLDHQV FG+HV + GS KE+GSWKK  P+ WSE+GW+C+LE  GG
Sbjct: 65  KKKDGSGTKVRLNVRLDHQVNFGDHVAMFGSAKEIGSWKKKSPLNWSENGWVCELELDGG 124

Query: 62  ESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHLVEDVL--- 118
           + +EYKFVIV+ND S +WE+GDNR+LK+P  G+F +VCHW+ T E +DL   V +     
Sbjct: 125 QVLEYKFVIVKNDGSLSWESGDNRVLKVPNSGNFSVVCHWDATRETLDLPQEVGNDDDVG 184

Query: 119 ------DNGSVVTD--AAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSG 170
                 DN  V  D     +   ++  S   GQWQGK ASFMR++DH NRE+ R WDTSG
Sbjct: 185 DGGHERDNHDVGDDRVVGSENGAQLQKSTLGGQWQGKDASFMRSNDHGNREVGRNWDTSG 244

Query: 171 LQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCF 230
           L+G  LK+VEGD+ ++NWWRKLE+VRE+IV +++ +ERL+ALIYSAIYLKWINTG+IPCF
Sbjct: 245 LEGTALKMVEGDRNSKNWWRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCF 304

Query: 231 EDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLT 290
           EDGGHHRPNRHAEISRLIFRELE I  +KDA+P+EVLV RKIHPCLPSFKAEFTA+VPLT
Sbjct: 305 EDGGHHRPNRHAEISRLIFRELEHICSKKDATPEEVLVARKIHPCLPSFKAEFTAAVPLT 364

Query: 291 RIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQ 350
           RIRDIAHRNDIPHDLK EIKHTIQNKLHRNAGPEDL+ATEAML +IT+ PG+YS  FVEQ
Sbjct: 365 RIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLQRITETPGKYSGDFVEQ 424

Query: 351 FKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKK 394
           FK+FH+ELKDFFNAGSL EQLDS++ S+D++  SAL+ F ECKK
Sbjct: 425 FKIFHNELKDFFNAGSLTEQLDSMKISMDDRGLSALNLFFECKK 468
Mediates the incorporation of phosphate into starch-like phospho-alpha-glucan, mostly at the C-3 position of glucose units. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 5
>sp|Q2QTC2|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2 Back     alignment and function description
>sp|P22832|AMYG_ASPSH Glucoamylase OS=Aspergillus shirousami GN=glaA PE=3 SV=1 Back     alignment and function description
>sp|P23176|AMYG_ASPKA Glucoamylase I OS=Aspergillus kawachii GN=gaI PE=1 SV=1 Back     alignment and function description
>sp|P69328|AMYG_ASPNG Glucoamylase OS=Aspergillus niger GN=GLAA PE=1 SV=1 Back     alignment and function description
>sp|P69327|AMYG_ASPAW Glucoamylase OS=Aspergillus awamori GN=GLAA PE=1 SV=1 Back     alignment and function description
>sp|O30565|CDGT_BREBE Cyclomaltodextrin glucanotransferase OS=Brevibacillus brevis GN=cgt PE=3 SV=1 Back     alignment and function description
>sp|P19584|AMYB_THETU Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1 Back     alignment and function description
>sp|P09121|CDGT_BACS3 Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 38-2) GN=cgt PE=1 SV=2 Back     alignment and function description
>sp|P05618|CDGT_BACS0 Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 1011) GN=cgt PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
225433656 1188 PREDICTED: phosphoglucan, water dikinase 0.949 0.329 0.748 1e-176
296089605 1149 unnamed protein product [Vitis vinifera] 0.949 0.340 0.748 1e-176
255555150 1174 chloroplast alpha-glucan water dikinase, 0.927 0.325 0.757 1e-175
79521972 1196 phosphoglucan, water dikinase [Arabidops 0.953 0.328 0.663 1e-160
186525893 865 phosphoglucan, water dikinase [Arabidops 0.953 0.454 0.663 1e-159
53771834 1196 chloroplast alpha-glucan water dikinase 0.953 0.328 0.660 1e-159
356534518 1190 PREDICTED: LOW QUALITY PROTEIN: phosphog 0.919 0.318 0.693 1e-158
297808657 1193 hypothetical protein ARALYDRAFT_489476 [ 0.949 0.327 0.655 1e-158
270269270 1202 glucan/water dikinase [Solanum tuberosum 0.883 0.302 0.700 1e-157
449468804 1217 PREDICTED: phosphoglucan, water dikinase 0.956 0.323 0.658 1e-155
>gi|225433656|ref|XP_002265211.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/402 (74%), Positives = 349/402 (86%), Gaps = 11/402 (2%)

Query: 1   MKPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKG 60
           M+ ++G G  V++S  L HQV+FGEHVV+LGSTKELGSWKKNVPM W+E+GW+C LE +G
Sbjct: 68  MRTRTGSG-KVKLSILLKHQVKFGEHVVMLGSTKELGSWKKNVPMNWTENGWVCKLELRG 126

Query: 61  GESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAVDLLHL------V 114
            ESIEYKFVIV+ DKS  WE  +NR+LKLPKGGSF +VC WN TGEAVDLL L      V
Sbjct: 127 DESIEYKFVIVKRDKSMTWEGANNRVLKLPKGGSFGVVCLWNATGEAVDLLPLDSEKDEV 186

Query: 115 E-DVLDN-GSVVTDAAPDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTSGLQ 172
           E D +D  GS V D+A  ++LEV TSPFV QWQG+S SFMR+++H N+E ER+WDTSGL+
Sbjct: 187 EFDHMDEIGSAVVDSA--SVLEVQTSPFVEQWQGRSVSFMRSNEHRNQETERRWDTSGLE 244

Query: 173 GLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCFED 232
           GL  KLVEGD+ ARNWW+KLEVVREL+V NL+S +RLEALI+SAIYLKWINTG+IPCFE 
Sbjct: 245 GLARKLVEGDRNARNWWQKLEVVRELLVGNLESGDRLEALIFSAIYLKWINTGQIPCFEG 304

Query: 233 GGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLTRI 292
           GGHHRPNRHAEISRLIFRELE+ISC KD SPQEVLVIRKIHPCLPSFKAEFTASVPLTRI
Sbjct: 305 GGHHRPNRHAEISRLIFRELERISCMKDTSPQEVLVIRKIHPCLPSFKAEFTASVPLTRI 364

Query: 293 RDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQFK 352
           RDIAHR DIPHDLK EIKHTIQNKLHRNAGPEDLVAT+AMLA+IT+NPGEYSE+FVEQFK
Sbjct: 365 RDIAHRGDIPHDLKQEIKHTIQNKLHRNAGPEDLVATDAMLARITRNPGEYSETFVEQFK 424

Query: 353 MFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKK 394
           +FH ELKDFFNAG+L EQL+SI+ES D++++SAL+ FLECK+
Sbjct: 425 IFHHELKDFFNAGNLTEQLESIKESFDDRSSSALTLFLECKE 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089605|emb|CBI39424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255555150|ref|XP_002518612.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis] gi|223542211|gb|EEF43754.1| chloroplast alpha-glucan water dikinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|79521972|ref|NP_198009.3| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|75136610|sp|Q6ZY51.1|PWD_ARATH RecName: Full=Phosphoglucan, water dikinase, chloroplastic; Flags: Precursor gi|46367508|emb|CAG25776.1| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|332006172|gb|AED93555.1| phosphoglucan, water dikinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186525893|ref|NP_001119280.1| phosphoglucan, water dikinase [Arabidopsis thaliana] gi|332006173|gb|AED93556.1| phosphoglucan, water dikinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|53771834|gb|AAU93516.1| chloroplast alpha-glucan water dikinase isoform 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356534518|ref|XP_003535800.1| PREDICTED: LOW QUALITY PROTEIN: phosphoglucan, water dikinase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297808657|ref|XP_002872212.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata] gi|297318049|gb|EFH48471.1| hypothetical protein ARALYDRAFT_489476 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|270269270|gb|ACZ66259.1| glucan/water dikinase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|449468804|ref|XP_004152111.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus] gi|449484653|ref|XP_004156941.1| PREDICTED: phosphoglucan, water dikinase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2151089 1196 PWD "PHOSPHOGLUCAN WATER DIKIN 0.953 0.328 0.658 4.5e-146
DICTYBASE|DDB_G0270014206 DDB_G0270014 [Dictyostelium di 0.199 0.398 0.340 1.9e-05
UNIPROTKB|F1PGI4310 STBD1 "Uncharacterized protein 0.216 0.287 0.301 3.1e-05
UNIPROTKB|J9P713312 STBD1 "Uncharacterized protein 0.216 0.285 0.301 3.2e-05
TAIR|locus:2150119385 AT5G01260 "AT5G01260" [Arabido 0.223 0.238 0.288 8e-05
UNIPROTKB|F1RYS9355 STBD1 "Uncharacterized protein 0.216 0.250 0.290 0.00012
ASPGD|ASPL0000028865385 AN5463 [Emericella nidulans (t 0.206 0.220 0.304 0.00013
ASPGD|ASPL0000067642661 glaB [Emericella nidulans (tax 0.194 0.121 0.310 0.00039
UNIPROTKB|E1BAJ4339 STBD1 "Uncharacterized protein 0.216 0.262 0.268 0.00064
UNIPROTKB|Q22X01480 TTHERM_00633520 "Dual specific 0.194 0.166 0.311 0.00068
TAIR|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1427 (507.4 bits), Expect = 4.5e-146, P = 4.5e-146
 Identities = 266/404 (65%), Positives = 319/404 (78%)

Query:     2 KPKSGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGG 61
             K K G G  VR++ RLDHQV FG+HV + GS KE+GSWKK  P+ WSE+GW+C+LE  GG
Sbjct:    65 KKKDGSGTKVRLNVRLDHQVNFGDHVAMFGSAKEIGSWKKKSPLNWSENGWVCELELDGG 124

Query:    62 ESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWNKTGEAXXXXXXXXXXXXNG 121
             + +EYKFVIV+ND S +WE+GDNR+LK+P  G+F +VCHW+ T E              G
Sbjct:   125 QVLEYKFVIVKNDGSLSWESGDNRVLKVPNSGNFSVVCHWDATRETLDLPQEVGNDDDVG 184

Query:   122 SVVT-----DAAPDALL--EVGT----SPFVGQWQGKSASFMRADDHWNREMERKWDTSG 170
                      D   D ++  E G     S   GQWQGK ASFMR++DH NRE+ R WDTSG
Sbjct:   185 DGGHERDNHDVGDDRVVGSENGAQLQKSTLGGQWQGKDASFMRSNDHGNREVGRNWDTSG 244

Query:   171 LQGLTLKLVEGDQRARNWWRKLEVVRELIVENLQSDERLEALIYSAIYLKWINTGKIPCF 230
             L+G  LK+VEGD+ ++NWWRKLE+VRE+IV +++ +ERL+ALIYSAIYLKWINTG+IPCF
Sbjct:   245 LEGTALKMVEGDRNSKNWWRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCF 304

Query:   231 EDGGHHRPNRHAEISRLIFRELEQISCRKDASPQEVLVIRKIHPCLPSFKAEFTASVPLT 290
             EDGGHHRPNRHAEISRLIFRELE I  +KDA+P+EVLV RKIHPCLPSFKAEFTA+VPLT
Sbjct:   305 EDGGHHRPNRHAEISRLIFRELEHICSKKDATPEEVLVARKIHPCLPSFKAEFTAAVPLT 364

Query:   291 RIRDIAHRNDIPHDLKLEIKHTIQNKLHRNAGPEDLVATEAMLAKITKNPGEYSESFVEQ 350
             RIRDIAHRNDIPHDLK EIKHTIQNKLHRNAGPEDL+ATEAML +IT+ PG+YS  FVEQ
Sbjct:   365 RIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPEDLIATEAMLQRITETPGKYSGDFVEQ 424

Query:   351 FKMFHSELKDFFNAGSLAEQLDSIRESLDEQAASALSSFLECKK 394
             FK+FH+ELKDFFNAGSL EQLDS++ S+D++  SAL+ F ECKK
Sbjct:   425 FKIFHNELKDFFNAGSLTEQLDSMKISMDDRGLSALNLFFECKK 468
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016301 "kinase activity" evidence=IEA
GO:0016310 "phosphorylation" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:2001070 "starch binding" evidence=IEA
GO:0005983 "starch catabolic process" evidence=TAS
GO:0009536 "plastid" evidence=IDA
GO:0051752 "phosphoglucan, water dikinase activity" evidence=ISS;IDA
GO:0005982 "starch metabolic process" evidence=RCA;IMP
GO:0019200 "carbohydrate kinase activity" evidence=IDA
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000272 "polysaccharide catabolic process" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0270014 DDB_G0270014 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI4 STBD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P713 STBD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2150119 AT5G01260 "AT5G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYS9 STBD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ASPGD|ASPL0000028865 AN5463 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000067642 glaB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAJ4 STBD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q22X01 TTHERM_00633520 "Dual specificity phosphatase, catalytic domain containing protein" [Tetrahymena thermophila SB210 (taxid:312017)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.9LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033526001
SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (1117 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019399001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (585 aa)
   •  • 0.588
GSVIVG00018076001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (378 aa)
   •  • 0.471
GSVIVG00015177001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (583 aa)
   •  • 0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
cd0581892 cd05818, CBM20_water_dikinase, Phosphoglucan water 2e-50
cd0546796 cd05467, CBM20, The family 20 carbohydrate-binding 9e-24
pfam0068696 pfam00686, CBM_20, Starch binding domain 8e-21
smart0106588 smart01065, CBM_2, Starch binding domain 6e-19
cd05811106 cd05811, CBM20_glucoamylase, Glucoamylase (glucan1 4e-12
cd05817100 cd05817, CBM20_DSP, Dual-specificity phosphatase ( 1e-10
cd0580895 cd05808, CBM20_alpha_amylase, Alpha-amylase, C-ter 3e-09
cd0581699 cd05816, CBM20_DPE2_repeat2, Disproportionating en 5e-09
cd05807101 cd05807, CBM20_CGTase, CGTase, C-terminal CBM20 (c 2e-08
cd0580999 cd05809, CBM20_beta_amylase, Beta-amylase, C-termi 9e-08
cd05820103 cd05820, CBM20_novamyl, Novamyl (also known as aca 4e-07
cd05815101 cd05815, CBM20_DPE2_repeat1, Disproportionating en 8e-07
PLN02950 909 PLN02950, PLN02950, 4-alpha-glucanotransferase 2e-06
cd0581395 cd05813, CBM20_genethonin_1, Genethonin-1, C-termi 2e-05
PLN02950 909 PLN02950, PLN02950, 4-alpha-glucanotransferase 0.001
>gnl|CDD|99892 cd05818, CBM20_water_dikinase, Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information 
 Score =  164 bits (417), Expect = 2e-50
 Identities = 65/91 (71%), Positives = 77/91 (84%)

Query: 11  VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPMKWSESGWLCDLEFKGGESIEYKFVI 70
           V++  RLDHQV+FGEHV ILGSTKELGSWKK VPM W+E+GW+CDLE  GGE +EYKFVI
Sbjct: 2   VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61

Query: 71  VRNDKSKAWEAGDNRILKLPKGGSFEIVCHW 101
           V+ D S  WE G+NR+L+LPK G+FEIVCHW
Sbjct: 62  VKRDGSVIWEGGNNRVLELPKEGNFEIVCHW 92

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. Length = 92
>gnl|CDD|119437 cd05467, CBM20, The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>gnl|CDD|216060 pfam00686, CBM_20, Starch binding domain Back     alignment and domain information
>gnl|CDD|215006 smart01065, CBM_2, Starch binding domain Back     alignment and domain information
>gnl|CDD|99886 cd05811, CBM20_glucoamylase, Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99891 cd05817, CBM20_DSP, Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99883 cd05808, CBM20_alpha_amylase, Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99890 cd05816, CBM20_DPE2_repeat2, Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>gnl|CDD|99882 cd05807, CBM20_CGTase, CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99884 cd05809, CBM20_beta_amylase, Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99893 cd05820, CBM20_novamyl, Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|99889 cd05815, CBM20_DPE2_repeat1, Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>gnl|CDD|215512 PLN02950, PLN02950, 4-alpha-glucanotransferase Back     alignment and domain information
>gnl|CDD|99887 cd05813, CBM20_genethonin_1, Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>gnl|CDD|215512 PLN02950, PLN02950, 4-alpha-glucanotransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
PLN02950 909 4-alpha-glucanotransferase 99.88
cd0581892 CBM20_water_dikinase Phosphoglucan water dikinase 99.87
cd0580895 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 99.86
PF0068696 CBM_20: Starch binding domain; InterPro: IPR002044 99.85
cd0546796 CBM20 The family 20 carbohydrate-binding module (C 99.83
cd05811106 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g 99.82
cd05815101 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP 99.81
cd05807101 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat 99.8
cd0581395 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 99.79
cd05820103 CBM20_novamyl Novamyl (also known as acarviose tra 99.78
cd05817100 CBM20_DSP Dual-specificity phosphatase (DSP), N-te 99.74
cd0580999 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 99.73
cd0581699 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP 99.71
cd0581097 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol 99.7
cd05814120 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate- 99.51
cd05806112 CBM20_laforin Laforin protein tyrosine phosphatase 99.51
PLN02950 909 4-alpha-glucanotransferase 99.43
cd0285979 AMPKbeta_GBD_like AMP-activated protein kinase (AM 97.56
cd0286182 E_set_proteins_like E or "early" set-like proteins 97.01
PF0068696 CBM_20: Starch binding domain; InterPro: IPR002044 94.64
cd05815101 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP 93.56
cd0285499 Glycogen_branching_enzyme_like_N_term Glycogen bra 92.76
cd0546796 CBM20 The family 20 carbohydrate-binding module (C 92.7
cd0580895 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2 92.6
cd05817100 CBM20_DSP Dual-specificity phosphatase (DSP), N-te 92.51
PF0292285 CBM_48: Carbohydrate-binding module 48 (Isoamylase 92.38
cd0581699 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP 91.24
cd05814120 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate- 91.05
cd05806112 CBM20_laforin Laforin protein tyrosine phosphatase 90.11
cd05811106 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g 88.95
cd0581097 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol 88.73
cd0285885 Esterase_N_term Esterase N-terminal domain. Estera 88.08
KOG2421417 consensus Predicted starch-binding protein [Genera 87.23
COG2517219 Predicted RNA-binding protein containing a C-termi 85.79
PF0342387 CBM_25: Carbohydrate binding domain (family 25); I 85.77
cd0268883 E_set E or "early" set of sugar utilizing enzymes 85.31
COG3943329 Virulence protein [General function prediction onl 84.96
PF02903120 Alpha-amylase_N: Alpha amylase, N-terminal ig-like 80.78
cd0581395 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 80.09
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information 
Probab=99.88  E-value=3e-22  Score=221.97  Aligned_cols=157  Identities=25%  Similarity=0.479  Sum_probs=130.8

Q ss_pred             CCCeEEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeee---CC-cEEEEEEecCCceEEEEEEEEeCCCc-eEE
Q 015140            7 HGGNVRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWS---ES-GWLCDLEFKGGESIEYKFVIVRNDKS-KAW   79 (412)
Q Consensus         7 ~~~~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t---dg-~W~veV~lp~gt~~EYKYvI~d~~g~-veW   79 (412)
                      +...|+|+|++.|.|.|||+|+|+||+++||+|+  ++++|+++   ++ .|+++|.+|.+..|+|||++++.++. +.|
T Consensus         5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W   84 (909)
T PLN02950          5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW   84 (909)
T ss_pred             CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence            4567999999999999999999999999999999  99999765   44 89999999998899999999887766 589


Q ss_pred             ecCCCceEEcCCC----CeEEEEEEeCCCCcccccccccc-c---ccCCC----------C--CCCC-----------C-
Q 015140           80 EAGDNRILKLPKG----GSFEIVCHWNKTGEAVDLLHLVE-D---VLDNG----------S--VVTD-----------A-  127 (412)
Q Consensus        80 E~G~NR~L~lp~~----~s~~V~D~W~~~pe~~~LySSAf-d---~~~~~----------~--~~p~-----------q-  127 (412)
                      |.|.||.+.+|.+    ..++|.|+|.+++++.++|+||| +   .+...          .  .++.           + 
T Consensus        85 E~g~NR~l~lp~~~~~~~~~~i~D~W~~~~~~~~~~~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~F~v~~~~~  164 (909)
T PLN02950         85 EAGKKRKLVLPEGLQGGELVELHDLWQKSGPEALFFRSAFKDVIFRHSWGVNTERPLGALNKPPAPDEIVVRFKIACPRL  164 (909)
T ss_pred             ecCCCeeEECCcccCCCceEEEEEEecCCchhhhhhHHHHhhhhcccccccccccccccccccCCCCceeEEEEEecCcc
Confidence            9999999999963    47999999999999999999999 2   22110          0  1111           1 


Q ss_pred             -ccccccccCCCCccCCCCCCcceeeecCCCcccccccccccc
Q 015140          128 -APDALLEVGTSPFVGQWQGKSASFMRADDHWNREMERKWDTS  169 (412)
Q Consensus       128 -l~~~L~l~Gss~~LG~W~~~kA~~M~~~n~~~~~~~~~wdt~  169 (412)
                       .++.++++|+.+.||+|+..+|+.|+.++      ...|-.+
T Consensus       165 ~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~------~p~W~~~  201 (909)
T PLN02950        165 EEGTSVYVTGSIAQLGNWQVDDGLKLNYTG------DSIWEAD  201 (909)
T ss_pred             CCCCeEEEEechhhcCCCCcccccccccCC------CCcEEEE
Confidence             27888999999999999999999999865      3456654

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PLN02950 4-alpha-glucanotransferase Back     alignment and domain information
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD) Back     alignment and domain information
>cd02861 E_set_proteins_like E or "early" set-like proteins Back     alignment and domain information
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1 Back     alignment and domain information
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain Back     alignment and domain information
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase) Back     alignment and domain information
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2 Back     alignment and domain information
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information
>cd02858 Esterase_N_term Esterase N-terminal domain Back     alignment and domain information
>KOG2421 consensus Predicted starch-binding protein [General function prediction only] Back     alignment and domain information
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies Back     alignment and domain information
>COG3943 Virulence protein [General function prediction only] Back     alignment and domain information
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1acz_A108 Glucoamylase, Granular Starch-Binding Domain Comple 1e-07
1ac0_A108 Glucoamylase, Granular Starch-Binding Domain Comple 1e-07
1v3j_A686 Crystal Structure Of F283l Mutant Cyclodextrin Glyc 6e-07
1d7f_A686 Crystal Structure Of Asparagine 233-Replaced Cyclod 6e-07
1v3k_A686 Crystal Structure Of F283y Mutant Cyclodextrin Glyc 6e-07
1ukt_A686 Crystal Structure Of Y100l Mutant Cyclodextrin Gluc 6e-07
1pam_A686 Cyclodextrin Glucanotransferase Length = 686 6e-07
1uks_A686 Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN 6e-07
1cyg_A680 Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt 2e-06
1pez_A686 Bacillus Circulans Strain 251 Mutant A230v Length = 2e-06
1a47_A683 Cgtase From Thermoanaerobacterium Thermosulfurigene 2e-06
3bmv_A683 Cyclodextrin Glycosyl Transferase From Thermoanerob 2e-06
1kcl_A686 Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl 2e-06
1ot1_A686 Bacillus Circulans Strain 251 Cyclodextrin Glycosyl 2e-06
1ot2_A686 Bacillus Circulans Strain 251 Cyclodextrin Glycosyl 2e-06
1kck_A686 Bacillus Circulans Strain 251 Cyclodextrin Glycosyl 2e-06
1cxk_A686 Complex Between A Maltononaose Substrate And Bacill 2e-06
1cxl_A686 Complex Between A Covalent Intermediate And Bacillu 2e-06
1eo5_A686 Bacillus Circulans Strain 251 Cyclodextrin Glycosyl 2e-06
1cdg_A686 Nucleotide Sequence And X-Ray Structure Of Cyclodex 2e-06
1dtu_A686 Bacillus Circulans Strain 251 Cyclodextrin Glycosyl 2e-06
1cgx_A686 Site Directed Mutations Of The Active Site Residue 2e-06
1cgv_A686 Site Directed Mutations Of The Active Site Residue 2e-06
1cgw_A686 Site Directed Mutations Of The Active Site Residue 2e-06
1cgy_A686 Site Directed Mutations Of The Active Site Residue 2e-06
1pj9_A686 Bacillus Circulans Strain 251 Loop Mutant 183-195 L 3e-06
1qho_A686 Five-Domain Alpha-Amylase From Bacillus Stearotherm 3e-05
1tcm_A686 Cyclodextrin Glycosyltransferase W616a Mutant From 6e-05
2vn4_A599 Glycoside Hydrolase Family 15 Glucoamylase From Hyp 1e-04
8cgt_A684 Structure Of Cyclodextrin Glycosyltransferase Compl 2e-04
6cgt_A684 Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu 2e-04
1cgt_A684 Structure Of Cyclodextrin Glycosyltransferase Refin 2e-04
1cgu_A684 Catalytic Center Of Cyclodextrin Glycosyltransferas 2e-04
4cgt_A678 Deletion Mutant Delta(145-150), F151d Of Cyclodextr 3e-04
>pdb|1ACZ|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, 5 Structures Length = 108 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 11 VRISFRLDHQVEFGEHVVILGSTKELGSWKKNVPM-----KWSESG--WLCDLEFKGGES 63
          V ++F L     +GE++ ++GS  +LG W+ +  +     K++ S   W   +    GES
Sbjct: 7  VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGES 66
Query: 64 IEYKFVIVRNDKSKAWEAGDNRILKLPKG 92
           EYKF+ + +D S  WE+  NR   +P+ 
Sbjct: 67 FEYKFIRIESDDSVEWESDPNREYTVPQA 95
>pdb|1AC0|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, Minimized Average Structure Length = 108 Back     alignment and structure
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin Glycosyltransferase Length = 686 Back     alignment and structure
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Determined At 1.9 A Resolution Length = 686 Back     alignment and structure
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase Length = 686 Back     alignment and structure
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin Glucanotransferase Compexed With An Acarbose Length = 686 Back     alignment and structure
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase Length = 686 Back     alignment and structure
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose Length = 686 Back     alignment and structure
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) Length = 680 Back     alignment and structure
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v Length = 686 Back     alignment and structure
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1 In Complex With A Maltohexaose Inhibitor Length = 683 Back     alignment and structure
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p Length = 683 Back     alignment and structure
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl Transferase Mutant G179l Length = 686 Back     alignment and structure
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135a Length = 686 Back     alignment and structure
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135n Length = 686 Back     alignment and structure
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant N193g Length = 686 Back     alignment and structure
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus Circulans Strain 251 Cgtase E257qD229N Length = 686 Back     alignment and structure
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus Circulans Strain 251 Cgtase E257q Length = 686 Back     alignment and structure
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase In Complex With Maltoheptaose Length = 686 Back     alignment and structure
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 In A Maltose-Dependent Crystal Form Length = 686 Back     alignment and structure
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN Hexasaccharide Inhibitor Length = 686 Back     alignment and structure
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 Back     alignment and structure
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 Back     alignment and structure
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 Back     alignment and structure
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686 Back     alignment and structure
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195 Length = 686 Back     alignment and structure
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686 Back     alignment and structure
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From Bacillus Circulans Strain 251 Length = 686 Back     alignment and structure
>pdb|2VN4|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina Length = 599 Back     alignment and structure
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed With A Thio-Maltohexaose Length = 684 Back     alignment and structure
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant Length = 684 Back     alignment and structure
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At 2.0 Angstroms Resolution Length = 684 Back     alignment and structure
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase Derived From X-Ray Structure Analysis Combined With Site- Directed Mutagenesis Length = 684 Back     alignment and structure
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin Glycosyltransferase Length = 678 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 3e-23
2vn4_A599 Glucoamylase; hydrolase, carbohydrate binding, gly 5e-20
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 9e-15
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 1e-13
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 2e-10
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 4e-09
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 6e-09
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 2e-07
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 5e-07
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Length = 108 Back     alignment and structure
 Score = 92.6 bits (230), Expect = 3e-23
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 11  VRISFRLDHQVEFGEHVVILGSTKELGSW--KKNVPMKWSE-----SGWLCDLEFKGGES 63
           V ++F L     +GE++ ++GS  +LG W     + +   +       W   +    GES
Sbjct: 7   VAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGES 66

Query: 64  IEYKFVIVRNDKSKAWEAGDNRILKLPK---GGSFEIVCHW 101
            EYKF+ + +D S  WE+  NR   +P+     +  +   W
Sbjct: 67  FEYKFIRIESDDSVEWESDPNREYTVPQACGTSTATVTDTW 107
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Length = 599 Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Length = 516 Back     alignment and structure
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Length = 131 Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680 Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686 Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527 Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686 Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 99.87
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 99.78
2vn4_A599 Glucoamylase; hydrolase, carbohydrate binding, gly 99.78
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 99.74
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 99.73
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 99.72
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 99.72
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 99.7
1gcy_A527 Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b 99.57
2laa_A104 Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa 97.95
1z0n_A96 5'-AMP-activated protein kinase, beta-1 subunit; b 97.35
4aee_A 696 Alpha amylase, catalytic region; hydrolase, hypert 97.06
3nme_A294 Ptpkis1 protein, SEX4 glucan phosphatase; dual spe 96.75
2qlv_B252 Protein SIP2, protein SPM2; heterotrimer, ATP-bind 95.97
2c3v_A102 Alpha-amylase G-6; carbohydrate-binding module, st 95.63
4aef_A 645 Neopullulanase (alpha-amylase II); hydrolase, ther 94.9
1ac0_A108 Glucoamylase; hydrolase, starch binding domain; HE 93.05
1cyg_A680 Cyclodextrin glucanotransferase; glycosyltransfera 92.88
2z0b_A131 GDE5, KIAA1434, putative glycerophosphodiester pho 92.3
1d3c_A686 Cyclodextrin glycosyltransferase; alpha-amylase, p 92.27
3bmv_A683 Cyclomaltodextrin glucanotransferase; glycosidase, 90.02
1qho_A686 Alpha-amylase; glycoside hydrolase, starch degrada 88.68
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Back     alignment and structure
Probab=99.87  E-value=4.7e-23  Score=173.21  Aligned_cols=95  Identities=27%  Similarity=0.648  Sum_probs=86.7

Q ss_pred             CCeEEEEEEEEeecCCCCEEEEEeCCCCcCCCC--ccccCeee----CC-cEEEEEEecCCceEEEEEEEEeCCCceEEe
Q 015140            8 GGNVRISFRLDHQVEFGEHVVILGSTKELGSWK--KNVPMKWS----ES-GWLCDLEFKGGESIEYKFVIVRNDKSKAWE   80 (412)
Q Consensus         8 ~~~v~V~F~I~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~t----dg-~W~veV~lp~gt~~EYKYvI~d~~g~veWE   80 (412)
                      ++.|.|+|+|++.|.+||+|+|+||+++||+|+  ++++|++.    ++ .|+++|++|.+..|||||+|.+.++.+.||
T Consensus         4 ~~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~~~~g~~~WE   83 (108)
T 1ac0_A            4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSVEWE   83 (108)
T ss_dssp             CCCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEECCSSSCCCCC
T ss_pred             CCeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEEcCCCCEEec
Confidence            467999999999999999999999999999999  89999987    44 999999999999999999998766777899


Q ss_pred             cCCCceEEcCCCC---eEEEEEEeC
Q 015140           81 AGDNRILKLPKGG---SFEIVCHWN  102 (412)
Q Consensus        81 ~G~NR~L~lp~~~---s~~V~D~W~  102 (412)
                      +|+||.+.+|.+.   .++|.|+|+
T Consensus        84 ~g~nR~~~~p~~~~~~~~~v~d~W~  108 (108)
T 1ac0_A           84 SDPNREYTVPQACGTSTATVTDTWR  108 (108)
T ss_dssp             CSSCCEECCCSSSSCSCCEEEEECC
T ss_pred             cCCCEEEECCCCCCccEEEEEEEeC
Confidence            9999999999853   689999995
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Back     alignment and structure
>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A Back     alignment and structure
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Back     alignment and structure
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Back     alignment and structure
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Back     alignment and structure
>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A* Back     alignment and structure
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus} Back     alignment and structure
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A Back     alignment and structure
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Back     alignment and structure
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens} Back     alignment and structure
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Back     alignment and structure
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Back     alignment and structure
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 412
d1qhoa2110 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransfera 9e-25
d3bmva2105 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransfera 4e-23
d1cyga2106 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransfera 6e-23
d1kula_108 b.3.1.1 (A:) Glucoamylase, granular starch-binding 5e-21
d1vema199 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus 3e-16
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 110 Back     information, alignment and structure

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 95.5 bits (237), Expect = 9e-25
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 5   SGHGGNVRISFRLDHQVEFGEHVVILGSTKELGSW--KKNVPMKWSESG--------WLC 54
           SG   +V  + +       G+ + + G+  ELG+W    +  +  ++          W  
Sbjct: 2   SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFY 61

Query: 55  DLEFKGGESIEYKFVIVRNDKSKAWEAGDNRILKLPKGGSFEIVCHWN 102
                 G++I++KF I R D +  WE G N +   P G +  I   W 
Sbjct: 62  VFSVPAGKTIQFKFFIKRADGTIQWENGSNHVATTPTGATGNITVTWQ 109
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Length = 105 Back     information, alignment and structure
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 106 Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Length = 108 Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1qhoa2110 Cyclodextrin glycosyltransferase, C-terminal domai 99.89
d1cyga2106 Cyclodextrin glycosyltransferase, C-terminal domai 99.89
d3bmva2105 Cyclodextrin glycosyltransferase, C-terminal domai 99.88
d1kula_108 Glucoamylase, granular starch-binding domain {Aspe 99.86
d1vema199 beta-amylase {Bacillus cereus [TaxId: 1396]} 99.8
d2qlvb187 SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} 97.23
d1z0na187 5'-AMP-activated protein kinase subunit beta-1 {Ra 97.04
d1kula_108 Glucoamylase, granular starch-binding domain {Aspe 93.32
d1cyga2106 Cyclodextrin glycosyltransferase, C-terminal domai 93.23
d1qhoa2110 Cyclodextrin glycosyltransferase, C-terminal domai 93.04
d3bmva2105 Cyclodextrin glycosyltransferase, C-terminal domai 92.96
d1vema199 beta-amylase {Bacillus cereus [TaxId: 1396]} 90.68
d1wzla1120 Maltogenic amylase, N-terminal domain N {Thermoact 87.84
d1j0ha1123 Neopullulanase, N-terminal domain {Bacillus stearo 82.71
d1m7xa1110 1,4-alpha-glucan branching enzyme, N-terminal doma 82.69
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Back     information, alignment and structure
class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=99.89  E-value=2.7e-23  Score=174.00  Aligned_cols=96  Identities=25%  Similarity=0.637  Sum_probs=85.8

Q ss_pred             CCeEEEEEEE--EeecCCCCEEEEEeCCCCcCCCC--ccccCeeeCC--------cEEEEEEecCCceEEEEEEEEeCCC
Q 015140            8 GGNVRISFRL--DHQVEFGEHVVILGSTKELGSWK--KNVPMKWSES--------GWLCDLEFKGGESIEYKFVIVRNDK   75 (412)
Q Consensus         8 ~~~v~V~F~I--~yqT~~GE~V~VvGS~~eLGnWd--kAv~Ms~tdg--------~W~veV~lp~gt~~EYKYvI~d~~g   75 (412)
                      +.++.|+|++  .+.|.|||+|+|+||+++||+|+  ++++|+++++        .|+++|.+|.++.|||||+|.+.++
T Consensus         3 ~~~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi~~~~g   82 (110)
T d1qhoa2           3 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRADG   82 (110)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEEECTTS
T ss_pred             CCceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEEEcCCC
Confidence            3456666666  46899999999999999999999  9999998652        6999999999999999999999888


Q ss_pred             ceEEecCCCceEEcCCCCeEEEEEEeCC
Q 015140           76 SKAWEAGDNRILKLPKGGSFEIVCHWNK  103 (412)
Q Consensus        76 ~veWE~G~NR~L~lp~~~s~~V~D~W~~  103 (412)
                      .+.||+|+||.+.+|.++..+|.|.|++
T Consensus        83 ~~~WE~g~NR~~~~p~~~~~~v~~~W~~  110 (110)
T d1qhoa2          83 TIQWENGSNHVATTPTGATGNITVTWQN  110 (110)
T ss_dssp             CEEECCSSCEEEECCSSSEEEEEEECCC
T ss_pred             CEEEcCCCCEEEEcCCCCcEEEEEECCC
Confidence            8999999999999999888999999975
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Back     information, alignment and structure
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure
>d1j0ha1 b.1.18.2 (A:1-123) Neopullulanase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]} Back     information, alignment and structure