Citrus Sinensis ID: 015141


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNALH
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccEEEEEEccEEEEEEEEEHHHHcccccccEEEEEEEccccc
ccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccHHHHHHHHccHHHccHHHHHHHHHcccccccEEEcHEcccccccccEEcccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccccHHHccccccEEEEEEcccEEEEEEEEEHHHHccccccEEEEEEEEEcccc
masgrglsgmgihrkrgggsrlPIVLVIFFSVLAPLIFFVGrglytsasidqndipsgsskqnvHWRERLALRYIKSLLSKDVIDVIAAStvdlgplsldSLRKSNMSASWKFVGAEtsvennatsepnqkavriekeapkgkgdniladghsqlvdtPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRkenendnsdSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALgdtaadadlhhsvPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAktipngihcMSMRLTIeyyllppekrkfpgsenlenpnlyhyaLFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNALH
masgrglsgmgihrkrgggsRLPIVLVIFFSVLAPLIFFVGRGLYTSAsidqndipsgsskqnvhwRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGaetsvennatsepnqkavRIEKEAPKGKGDniladghsqlvdtpaKQFRRQLRERRRekraadlvqqddeaIVKLEnaaiersksvdsavlgkysiwrkenendnsdstvRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTaadadlhhsvpEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAktipngihCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNALH
MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAkqfrrqlrerrrekrAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVcrllillhcclnalH
*******************SRLPIVLVIFFSVLAPLIFFVGRGLYTSASID***********NVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSL***********WKF*****************************************************************************************SAVLGKYSIWR*************LMRDQMIMARVYLSIA***************************************IKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPP**********LENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNA**
*****************GGSRLPIVLVIFFSVLAPLIFFVGRGLYTS*****************H********************VIAAS****************************************************************************************************************************************LMRDQMIMARVYLSIAKMKNKPDLQQELQSRLK*************************MGQVLSKAREQLYDCKLVTGKLRAML**************TFLSQLAAKTIPNGIHCMSMRLTIE********************NLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNA**
********GMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAE*************KAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRR**************VQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNALH
******************GSRLPIVLVIFFSVLAPLIFFVGRGLYTSA************KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFV*******************************************TPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNA**
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKVCRLLILLHCCLNALH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q9LE59 673 Polygalacturonate 4-alpha yes no 0.936 0.573 0.691 1e-150
Q9ZPZ1 528 Putative galacturonosyltr no no 0.611 0.477 0.501 2e-65
Q0WQD2 680 Probable galacturonosyltr no no 0.771 0.467 0.374 3e-58
Q93ZX7 616 Probable galacturonosyltr no no 0.424 0.284 0.548 4e-48
Q9M9Y5 589 Probable galacturonosyltr no no 0.463 0.324 0.432 6e-39
Q8RXE1 610 Probable galacturonosyltr no no 0.461 0.311 0.437 3e-38
Q9ZVI7 619 Probable galacturonosyltr no no 0.473 0.315 0.383 4e-36
Q9LSG3 559 Galacturonosyltransferase no no 0.330 0.243 0.439 3e-23
Q949Q1 537 Probable galacturonosyltr no no 0.446 0.342 0.312 3e-19
Q9SKT6 536 Probable galacturonosyltr no no 0.456 0.350 0.304 5e-18
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/399 (69%), Positives = 320/399 (80%), Gaps = 13/399 (3%)

Query: 1   MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSS 60
           MA  RGLSG+   R  GGGSR  +VL+IFF V APL FFVGRG+Y  +S   ND    S 
Sbjct: 1   MALKRGLSGVNRIRGSGGGSRSVLVLLIFFCVFAPLCFFVGRGVYIDSS---NDYSIVSV 57

Query: 61  KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSV 120
           KQN+ WRERLA++ ++SL SK+++DVIA ST DLGPLSLDS +K+N+SASW+  G + S 
Sbjct: 58  KQNLDWRERLAMQSVRSLFSKEILDVIATSTADLGPLSLDSFKKNNLSASWRGTGVDPSF 117

Query: 121 ---ENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAA 177
              EN AT  P+ K+  + +     K D+I  D   Q V+TP K  RRQLRE+RRE RA 
Sbjct: 118 RHSENPAT--PDVKSNNLNE-----KRDSISKDSIHQKVETPTKIHRRQLREKRREMRAN 170

Query: 178 DLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARV 237
           +LVQ +D+ I+KLENAAIERSKSVDSAVLGKYSIWR+ENENDNSDS +RLMRDQ+IMARV
Sbjct: 171 ELVQHNDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARV 230

Query: 238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297
           Y  IAK+KNK DL QELQ+RLK+SQR LG+  +DADL  S  EK++ MGQVL+KA+ QLY
Sbjct: 231 YSGIAKLKNKNDLLQELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLY 290

Query: 298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK 357
           DCKLVTGKLRAMLQTADEQVRSLKKQSTFL+QLAAKTIPN IHC+SMRLTI+YYLL PEK
Sbjct: 291 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEK 350

Query: 358 RKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAK 396
           RKFP SENLENPNLYHYALFSDNVLAASVVVNSTIMNAK
Sbjct: 351 RKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAK 389




Involved in pectin biosynthesis. Catalyzes the transfer of galacturonic acid from uridine 5'-diphosphogalacturonic acid onto the pectic polysaccharide homogalacturonan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function description
>sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVI7|GAUT7_ARATH Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
296089117 681 unnamed protein product [Vitis vinifera] 0.953 0.577 0.775 1e-174
359489396 654 PREDICTED: alpha-1,4-galacturonosyltrans 0.953 0.600 0.775 1e-174
317106631 693 JHL05D22.8 [Jatropha curcas] 0.958 0.569 0.778 1e-174
224130070 687 glycosyltransferase [Populus trichocarpa 0.958 0.574 0.743 1e-161
255541398 710 transferase, transferring glycosyl group 0.888 0.515 0.675 1e-149
15233046 673 alpha-1,4-galacturonosyltransferase 1 [A 0.936 0.573 0.691 1e-148
14517362 639 AT3g61130/T20K12_30 [Arabidopsis thalian 0.936 0.604 0.691 1e-148
297817422 673 GAUT1/LGT1 [Arabidopsis lyrata subsp. ly 0.939 0.575 0.683 1e-148
449454500 679 PREDICTED: polygalacturonate 4-alpha-gal 0.946 0.574 0.703 1e-147
449530604 679 PREDICTED: LOW QUALITY PROTEIN: polygala 0.946 0.574 0.701 1e-147
>gi|296089117|emb|CBI38820.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/397 (77%), Positives = 343/397 (86%), Gaps = 4/397 (1%)

Query: 1   MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSS 60
           MA  RGLSG  + R R   SRLP+ +VI  S+LAPLIFFVGRG+YT   ID  D+ S SS
Sbjct: 1   MALRRGLSGAALQRNRPSRSRLPLAVVISLSLLAPLIFFVGRGIYT---IDHTDVTSSSS 57

Query: 61  KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSV 120
           KQ+V WRERLAL++IKSLLSK+VID+I A+T DLGP SLD  RKSN+SASWK VG  TSV
Sbjct: 58  KQDVDWRERLALQHIKSLLSKEVIDIITATTDDLGPFSLDYFRKSNLSASWKVVGLGTSV 117

Query: 121 ENNATS-EPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADL 179
           ENN +S EPNQ    +++E P GK D      HSQ +D+PAK  RRQLRE+RR+KRAADL
Sbjct: 118 ENNTSSLEPNQMGPAVKQERPGGKQDKYSGGDHSQFIDSPAKLVRRQLREKRRDKRAADL 177

Query: 180 VQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYL 239
           V+QDDEA VKLENAAIERSKSVDSAVLGKYSIWRKEN+N+N+DSTVRLMRDQMIMARVY 
Sbjct: 178 VRQDDEATVKLENAAIERSKSVDSAVLGKYSIWRKENDNENTDSTVRLMRDQMIMARVYA 237

Query: 240 SIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDC 299
           SIAKMKNK DLQQEL +RLKESQR+LG+ +AD+DLHHS PEKIK MGQVLSKA+EQLYDC
Sbjct: 238 SIAKMKNKLDLQQELLARLKESQRSLGEASADSDLHHSAPEKIKAMGQVLSKAKEQLYDC 297

Query: 300 KLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRK 359
           KLVTGKLRAMLQ+ADEQVRSLKKQSTFLSQLAAKTIPNGIHC+SMRLTIEYYLLPPEKR+
Sbjct: 298 KLVTGKLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSMRLTIEYYLLPPEKRR 357

Query: 360 FPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAK 396
           FP SENLENPNLYHYALFSDNVLAASVVVNSTI+NAK
Sbjct: 358 FPRSENLENPNLYHYALFSDNVLAASVVVNSTILNAK 394




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489396|ref|XP_002272447.2| PREDICTED: alpha-1,4-galacturonosyltransferase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|317106631|dbj|BAJ53137.1| JHL05D22.8 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224130070|ref|XP_002320745.1| glycosyltransferase [Populus trichocarpa] gi|222861518|gb|EEE99060.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541398|ref|XP_002511763.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223548943|gb|EEF50432.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15233046|ref|NP_191672.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gi|75173891|sp|Q9LE59.1|GAUT1_ARATH RecName: Full=Polygalacturonate 4-alpha-galacturonosyltransferase; AltName: Full=Alpha-1,4-galacturonosyltransferase 1; AltName: Full=Galacturonosyltransferase 1; AltName: Full=Like glycosyl transferase 1 gi|6850880|emb|CAB71043.1| putative protein [Arabidopsis thaliana] gi|7799777|emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gi|86611465|gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|332646638|gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|14517362|gb|AAK62572.1| AT3g61130/T20K12_30 [Arabidopsis thaliana] gi|23308453|gb|AAN18196.1| At3g61130/T20K12_30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817422|ref|XP_002876594.1| GAUT1/LGT1 [Arabidopsis lyrata subsp. lyrata] gi|297322432|gb|EFH52853.1| GAUT1/LGT1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449454500|ref|XP_004144992.1| PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] gi|449473828|ref|XP_004153994.1| PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530604|ref|XP_004172284.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2098836 673 GAUT1 "galacturonosyltransfera 0.936 0.573 0.664 2.2e-128
TAIR|locus:2039934 528 GAUT2 "galacturonosyltransfera 0.611 0.477 0.482 2.8e-57
TAIR|locus:2121753 680 GAUT3 "galacturonosyltransfera 0.803 0.486 0.365 2.7e-52
TAIR|locus:2160957 616 GAUT4 "galacturonosyltransfera 0.424 0.284 0.548 3.4e-45
TAIR|locus:504955915 610 LGT5 "los glycosyltransferase 0.424 0.286 0.460 1.3e-40
TAIR|locus:2064163 619 GAUT7 "AT2G38650" [Arabidopsis 0.456 0.303 0.397 1e-38
TAIR|locus:2090210 559 QUA1 "QUASIMODO 1" [Arabidopsi 0.405 0.298 0.394 1.9e-24
TAIR|locus:2027453 537 GAUT11 "galacturonosyltransfer 0.429 0.329 0.317 4.3e-18
TAIR|locus:2074572 561 GAUT9 "galacturonosyltransfera 0.361 0.265 0.359 6.3e-18
TAIR|locus:2051426 536 GAUT10 "galacturonosyltransfer 0.422 0.324 0.316 9.8e-18
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 265/399 (66%), Positives = 308/399 (77%)

Query:     1 MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSS 60
             MA  RGLSG+   R  GGGSR  +VL+IFF V APL FFVGRG+Y  +S   ND    S 
Sbjct:     1 MALKRGLSGVNRIRGSGGGSRSVLVLLIFFCVFAPLCFFVGRGVYIDSS---NDYSIVSV 57

Query:    61 KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSV 120
             KQN+ WRERLA++ ++SL SK+++DVIA ST DLGPLSLDS +K+N+SASW+  G + S 
Sbjct:    58 KQNLDWRERLAMQSVRSLFSKEILDVIATSTADLGPLSLDSFKKNNLSASWRGTGVDPSF 117

Query:   121 ---ENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAXXXXXXXXXXXXXXXAA 177
                EN AT  P+ K+  + +     K D+I  D   Q V+TP                A 
Sbjct:   118 RHSENPAT--PDVKSNNLNE-----KRDSISKDSIHQKVETPTKIHRRQLREKRREMRAN 170

Query:   178 DLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARV 237
             +LVQ +D+ I+KLENAAIERSKSVDSAVLGKYSIWR+ENENDNSDS +RLMRDQ+IMARV
Sbjct:   171 ELVQHNDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARV 230

Query:   238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297
             Y  IAK+KNK DL QELQ+RLK+SQR LG+  +DADL  S  EK++ MGQVL+KA+ QLY
Sbjct:   231 YSGIAKLKNKNDLLQELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLY 290

Query:   298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK 357
             DCKLVTGKLRAMLQTADEQVRSLKKQSTFL+QLAAKTIPN IHC+SMRLTI+YYLL PEK
Sbjct:   291 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEK 350

Query:   358 RKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAK 396
             RKFP SENLENPNLYHYALFSDNVLAASVVVNSTIMNAK
Sbjct:   351 RKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAK 389




GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0010289 "homogalacturonan biosynthetic process" evidence=IDA
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=IDA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00026307001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (423 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
PLN02910 657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 6e-91
PLN02829 639 PLN02829, PLN02829, Probable galacturonosyltransfe 8e-71
PLN02718 603 PLN02718, PLN02718, Probable galacturonosyltransfe 3e-60
PLN02769 629 PLN02769, PLN02769, Probable galacturonosyltransfe 2e-50
PLN02742 534 PLN02742, PLN02742, Probable galacturonosyltransfe 2e-33
PLN02523 559 PLN02523, PLN02523, galacturonosyltransferase 2e-27
PLN02870 533 PLN02870, PLN02870, Probable galacturonosyltransfe 3e-17
PLN02867 535 PLN02867, PLN02867, Probable galacturonosyltransfe 1e-13
PLN02659 534 PLN02659, PLN02659, Probable galacturonosyltransfe 1e-13
cd06429 257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 5e-06
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
 Score =  287 bits (736), Expect = 6e-91
 Identities = 139/330 (42%), Positives = 209/330 (63%), Gaps = 24/330 (7%)

Query: 84  IDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQ-KAVRIEKEAPKG 142
           I+++A  +   G + L  ++  ++SASW         EN A    +Q K  +  +++   
Sbjct: 48  INIVATYSDTSGNIRLGRVKMKDLSASWVL-------ENPADKVHDQPKGSQRLEDSSSF 100

Query: 143 KGDNILADGHSQLVD----------------TPAKQFRRQLRERRREKRAADLVQQDDEA 186
           +      D  S                    +P K  R+ LR+ RR+ R A+L+QQD EA
Sbjct: 101 QNGTGEEDNVSHSTTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEA 160

Query: 187 IVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKN 246
             + + AAIERSKS+D++V GKYSIWR++ E+ NSDS ++LMRDQ+IMA+ Y +IAK  N
Sbjct: 161 DSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNN 220

Query: 247 KPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKL 306
             +L   L  + +E++RA+G+  +DA+LH S  ++ K MG VLS A++QLYDC  +  KL
Sbjct: 221 VTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKL 280

Query: 307 RAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENL 366
           RAMLQ+ + +V +LKK+S FL QLAAKT+P  +HC+ ++L  +Y+LL  + + +   + L
Sbjct: 281 RAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKL 340

Query: 367 ENPNLYHYALFSDNVLAASVVVNSTIMNAK 396
           E+P+LYHYA+FSDNVLA SVVVNST+++AK
Sbjct: 341 EDPSLYHYAIFSDNVLATSVVVNSTVLHAK 370


Length = 657

>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
PLN02910 657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02769 629 Probable galacturonosyltransferase 100.0
PLN02829 639 Probable galacturonosyltransferase 100.0
PLN02742 534 Probable galacturonosyltransferase 100.0
PLN02718 603 Probable galacturonosyltransferase 100.0
PLN02867 535 Probable galacturonosyltransferase 100.0
PLN02870 533 Probable galacturonosyltransferase 100.0
PLN02659 534 Probable galacturonosyltransferase 100.0
PLN02523 559 galacturonosyltransferase 100.0
PF1081979 DUF2564: Protein of unknown function (DUF2564) ; I 81.86
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
Probab=100.00  E-value=3e-107  Score=846.06  Aligned_cols=326  Identities=42%  Similarity=0.673  Sum_probs=309.3

Q ss_pred             HHHHHHHhccCCCCceeccccccCCCCcCcEEecccccccccCCC----CCCcc-------chhhhhcCCCCCCCCCccC
Q 015141           82 DVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATS----EPNQK-------AVRIEKEAPKGKGDNILAD  150 (412)
Q Consensus        82 e~id~i~~~~~~~G~l~l~~~~~~~ls~sw~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~  150 (412)
                      ++||+++||++..|.++|..|++++||+||++++|.+.+++++..    ++...       .+...++  .+++++++ +
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~  122 (657)
T PLN02910         46 KDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQNGTGEEDNVSHS--TTNQTDES-G  122 (657)
T ss_pred             cchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhccCcccccchhhh--hhhccccc-c
Confidence            789999999999999999999999999999999999999888732    22221       2333333  36777777 7


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccccccccccccccccccCCCCchhHHHHh
Q 015141          151 GHSQL--VDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLM  228 (412)
Q Consensus       151 ~~~~~--~~~p~~~~~~~~r~~~~~~r~~~l~~~d~e~~~~~e~~ai~rsk~~d~~~~g~y~iWr~e~e~~~~Ds~vr~l  228 (412)
                      ++.++  +++|+||+||++|++||+.|++||++||+|++.++|++||+|||+||++++|||||||+||++.|+|++||+|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g~y~~w~~e~~~~~~d~~vk~l  202 (657)
T PLN02910        123 IQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLM  202 (657)
T ss_pred             ccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCcccccceeeecccccccCcHHHHHHH
Confidence            77777  7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHhcccccCccCCCCHHHHHHHHHHHHHHhhccccChHHHHHHHHH
Q 015141          229 RDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRA  308 (412)
Q Consensus       229 kDQli~AKaY~~iAk~~nn~~L~~EL~~~Ire~qr~L~eA~~D~dLp~~a~~kik~M~~~L~kAK~~~yDc~~~~~KLRa  308 (412)
                      ||||||||||++|||++||++|+|||++||||+||+||+|++|+|||+++.++|++|+++|++||+++|||+++++|||+
T Consensus       203 kDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~~l~~ak~~~~d~~~~~~KLra  282 (657)
T PLN02910        203 RDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKLRA  282 (657)
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccCCCccccccchhhHHhhhCCCCCCCCCCCCCccCCCcceEEEEeCceeeehhhh
Q 015141          309 MLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVV  388 (412)
Q Consensus       309 mL~~~Eeqv~~~kkQs~fl~qLAAktiPKsLHCLsmRLT~EY~~~~~~~~~~p~~ekLeDpsLyHYaIFSDNVLAASVVV  388 (412)
                      ||+++||+++++|+|++||+||||+|||||||||+||||+|||.+++.++++|++|+|+||+||||||||||||||||||
T Consensus       283 ml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~ifSDNVLAaSVVV  362 (657)
T PLN02910        283 MLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVV  362 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhccCCcceeEEEEecceeeEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcccccCCeEEEEEecccC
Q 015141          389 NSTIMNAKVCRLLILLHCCLNAL  411 (412)
Q Consensus       389 NSTV~nAkeP~k~VvFHvVTd~~  411 (412)
                      ||||+||++|+|+| ||||||++
T Consensus       363 nSTv~na~~P~k~V-FHiVTD~~  384 (657)
T PLN02910        363 NSTVLHAKEPQKHV-FHIVTDKL  384 (657)
T ss_pred             hhhhhcccCccceE-EEEecCcc
Confidence            99999999999998 99999987



>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 61/395 (15%), Positives = 120/395 (30%), Gaps = 137/395 (34%)

Query: 74  YIKSLLSKDVID-VIAASTVDLGPLSL-DSLRKSNMSASWKFVGAETSVENNATSEPNQK 131
             KS+LSK+ ID +I +     G L L  +L         KFV                 
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---------------- 84

Query: 132 AVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLE 191
                          +L   +  L+       + + R+     R    ++Q D    +L 
Sbjct: 85  --------------EVLRINYKFLMS----PIKTEQRQPSMMTRM--YIEQRD----RLY 120

Query: 192 NAAIERSKSVDSAVLGKYSIWRKEN--------ENDNSDSTVRL--M------------- 228
           N         D+ V  KY++ R +                 V +  +             
Sbjct: 121 N---------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 229 RDQMIMAR----VY-LSIAKMKNKPDL----QQELQSRLKESQRALGDTAADADLH-HSV 278
               +  +    ++ L++    N P+      Q+L  ++  +  +  D +++  L  HS+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 279 PEKIK-LMGQ--------VL----SKAREQLYD--CK-LVTGKLRAM---LQTADEQVRS 319
             +++ L+          VL    +      ++  CK L+T + + +   L  A     S
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 320 LKKQS-TF-----LSQLA------AKTIPN---GIH--CMSM--------RLTIEYYL-- 352
           L   S T       S L        + +P      +   +S+          T + +   
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 353 -LPPEKRKFPGSENLENPNLY--HY---ALFSDNV 381
                      S N+  P  Y   +   ++F  + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00