Citrus Sinensis ID: 015151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MFGLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHccHHHHHHHHcccHHHHHHHHHcccccccccccHHcHHHHHHHHccccHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHccccccccccccccHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHEEEEEcccHHccccccccHHHHHccccccccccccccccccccccccccccccEEHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHcccHHHHHHHHHccccHHHHHHHHHHcHHHHHccHHccccHHHHHHHHHccccHHHHHHHccccccccHHHHcHHHHHHHHHccccHHHHHHHHHHccccEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHcccHHHHHHccHEEEEcHHHcccHHHHHHHHHHHccccccccccHHHEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccc
Coil and Loop (DISEMBL)
mfglscdcnrlllvrvpnaryagnsttpLRFVLHnvnrplvakpfsSIVAVTcenekqnkehSFTITYLIkscglppdvaASLSkkvnfetpekpdLVLSILRehgfsdkhISKLVKKCPDLLVRRAdktllpkleffasvgisgtaladvlssnpailgrslkkqiIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLvisnpgvlcetsnKFDESVKRVIHmgfspssgVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKkyprcmtlSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLssvvissdeyftDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEqnsgekql
Flexible Loop (DISEMBL)
mfglscdcNRLLLVRvpnaryagnsttplRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYslkrriiprcSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELgiefeqnsgekql
Low Complexity Region (SEG)
MFGLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL
Disordered region (IsUnstruct)
**GLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFET**KPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIE**********
Disordered Region (DISOPRED)
*******CNRLLLVRVPNA*********************************************TITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIEL****************
Disordered Region (DISEMBL)
MFGLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEF*********
Disordered Region (DISPRO)
MFGLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKP****************EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIEL****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGLSCDCNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
225438041	366	PREDICTED: uncharacterized protein LOC10	0.873	0.983	0.464	7e-89
359480040	390	PREDICTED: uncharacterized protein LOC10	0.883	0.933	0.426	9e-88
297744185	885	unnamed protein product [Vitis vinifera]	0.881	0.410	0.422	2e-87
225438053	412	PREDICTED: uncharacterized protein LOC10	0.856	0.856	0.461	5e-87
359480035	387	PREDICTED: uncharacterized protein LOC10	0.912	0.971	0.422	2e-86
225438051	410	PREDICTED: uncharacterized protein LOC10	0.856	0.860	0.456	3e-86
225436753	401	PREDICTED: uncharacterized protein LOC10	0.854	0.877	0.463	7e-86
225438045	463	PREDICTED: uncharacterized protein LOC10	0.907	0.807	0.420	1e-85
255559288	406	conserved hypothetical protein [Ricinus	0.825	0.837	0.478	1e-85
147817761	1575	hypothetical protein VITISV_028994 [Viti	0.854	0.223	0.460	9e-85

>gi|225438041|ref|XP_002271667.1| PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 175/377 (46%), Positives = 247/377 (65%), Gaps = 17/377 (4%)

Query: 27  TPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKK 86
           T L F L N+  P V + FSS           +K+HSFT++YL+ SCGL P+ A S SKK
Sbjct: 2   TQLHF-LGNIT-PFVIRCFSS-----------SKQHSFTVSYLMNSCGLSPETAISTSKK 48

Query: 87  VNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGT 146
           V FE PE PD VL++LR HG +D HISK+V K P LL+   +KTLLPKL+F  SVG+S  
Sbjct: 49  VQFENPENPDSVLALLRNHGCTDTHISKIVSKHPLLLLANPEKTLLPKLQFLGSVGLSHV 108

Query: 147 ALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPN 204
            LA VL+S P+IL  SL+K +IP+Y  LK ++  D   V AL +   +   +VEK I+PN
Sbjct: 109 DLAKVLASTPSILRMSLEKTLIPTYNLLKGVVIGDENAVKALTKQCRICCGNVEKTIAPN 168

Query: 205 ISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVST 264
            + LR+IGV  + IS LV + P  LC+  +KF ++VK+V+ MGF+P   +FV+AL  +  
Sbjct: 169 ATLLREIGVPMAHISFLVTNYP-TLCQKRDKFSKTVKKVMEMGFNPQRLLFVNALQVICQ 227

Query: 265 TTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVA 324
            ++ TW+QK+  Y   G S++E  LAF+ +P C  LS + I + MD+ +N MGWQP  +A
Sbjct: 228 MSESTWEQKINAYKRCGLSEDEIVLAFRNHPICFQLSEKKIMSTMDYIVN-MGWQPGTIA 286

Query: 325 RVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVP 384
           RV  VL ++L+RRI+PRCSV +VL LK L+K++  L + +  ++  F D F+ KYQ+ VP
Sbjct: 287 RVPAVLFFNLERRIVPRCSVAKVLLLKGLVKKDLCLGTFLKLTERAFIDRFIIKYQKYVP 346

Query: 385 QLLDIFRGKIELSELGI 401
           QLLD++ GK+   ELG+
Sbjct: 347 QLLDVYHGKVGFQELGL 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480040|ref|XP_002278053.2| PREDICTED: uncharacterized protein LOC100264327 [Vitis vinifera]

 Score =  330 bits (845), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 162/380 (42%), Positives = 249/380 (65%), Gaps = 16/380 (4%)

Query: 23  GNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAAS 82
            +ST  L F+ +    P + + FS+           + +HSFT++YL+ SCGL P+ A S
Sbjct: 21  ADSTAQLHFLRNPT--PFIIRSFSA-----------SNQHSFTVSYLVNSCGLSPETAIS 67

Query: 83  LSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVG 142
            S K++FE P+ PD +L++LR  G ++ HI+K+V K P LL+   +KTLLPKL+FF S+G
Sbjct: 68  ASGKIHFENPKNPDSILALLRNSGCTNTHITKIVTKLPSLLLVNPEKTLLPKLDFFGSMG 127

Query: 143 ISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLH--DVEKY 200
           +SG  LA +LSS P +L RSL+  +IP Y FLKSL   +   +  LK + ++   ++E+ 
Sbjct: 128 LSGARLASILSSEPIVLMRSLENALIPKYNFLKSLQISNEDAIKILKSSCWISCGNLERI 187

Query: 201 ISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALV 260
           I+ NI+ +R+IGV  S IS LV +    +C+ S+KF E+VK+V+ MGF+P    FV+AL 
Sbjct: 188 IATNIAVMREIGVPISHISVLV-ARYHTICQRSDKFSENVKKVVEMGFNPLKFAFVNALQ 246

Query: 261 AVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQP 320
           AV  TT+ TW+QK+ +Y  WGWS++E   AF+  P+CM LS + +   +DF +N+MGW+P
Sbjct: 247 AVCQTTESTWQQKMEMYRRWGWSEDEILSAFRNRPQCMQLSEKKVTKVLDFLVNKMGWRP 306

Query: 321 SAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQ 380
           + VAR    +  + ++R+ PRCSV++VL LK LIK++  L + +   +  F D +V KYQ
Sbjct: 307 AVVARAPIAICLNFEKRVAPRCSVVKVLSLKGLIKKDLKLGTFLNLPEGDFLDKYVIKYQ 366

Query: 381 EQVPQLLDIFRGKIELSELG 400
           +++PQLLD+++GK+   ELG
Sbjct: 367 DEIPQLLDVYQGKVGFVELG 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744185|emb|CBI37155.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 249/379 (65%), Gaps = 16/379 (4%)

Query: 23  GNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAAS 82
            +ST  L F+ +    P + + FS+           + +HSFT++YL+ SCGL P+ A S
Sbjct: 44  ADSTAQLHFLRNPT--PFIIRSFSA-----------SNQHSFTVSYLVNSCGLSPETAIS 90

Query: 83  LSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVG 142
            S K++FE P+ PD +L++LR  G ++ HI+K+V K P LL+   +KTLLPKL+FF S+G
Sbjct: 91  ASGKIHFENPKNPDSILALLRNSGCTNTHITKIVTKLPSLLLVNPEKTLLPKLDFFGSMG 150

Query: 143 ISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLH--DVEKY 200
           +SG  LA +LSS P +L RSL+  +IP Y FLKSL   +   +  LK + ++   ++E+ 
Sbjct: 151 LSGARLASILSSEPIVLMRSLENALIPKYNFLKSLQISNEDAIKILKSSCWISCGNLERI 210

Query: 201 ISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALV 260
           I+ NI+ +R+IGV  S IS LV +    +C+ S+KF E+VK+V+ MGF+P    FV+AL 
Sbjct: 211 IATNIAVMREIGVPISHISVLV-ARYHTICQRSDKFSENVKKVVEMGFNPLKFAFVNALQ 269

Query: 261 AVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQP 320
           AV  TT+ TW+QK+ +Y  WGWS++E   AF+  P+CM LS + +   +DF +N+MGW+P
Sbjct: 270 AVCQTTESTWQQKMEMYRRWGWSEDEILSAFRNRPQCMQLSEKKVTKVLDFLVNKMGWRP 329

Query: 321 SAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQ 380
           + VAR    +  + ++R+ PRCSV++VL LK LIK++  L + +   +  F D +V KYQ
Sbjct: 330 AVVARAPIAICLNFEKRVAPRCSVVKVLSLKGLIKKDLKLGTFLNLPEGDFLDKYVIKYQ 389

Query: 381 EQVPQLLDIFRGKIELSEL 399
           +++PQLLD+++GK+E+  +
Sbjct: 390 DEIPQLLDVYQGKVEMCSI 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438053|ref|XP_002271867.1| PREDICTED: uncharacterized protein LOC100263451 [Vitis vinifera]

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 164/355 (46%), Positives = 235/355 (66%), Gaps = 2/355 (0%)

Query: 60  KEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKC 119
           K+ SFT++YLI SCGL  D A S S+K++  TPE+PD VL++LR +G +D  + KL++  
Sbjct: 58  KQSSFTVSYLINSCGLSADSALSASQKLHLVTPERPDSVLTLLRNYGITDTQLPKLLRVY 117

Query: 120 PDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLS 179
           P LL+   +KTLLPKLEFF S   +   L  +LSS P IL RSL  QIIP Y FLKS+L 
Sbjct: 118 PTLLLADPEKTLLPKLEFFHSKAFTRADLGSILSSCPMILSRSLDYQIIPCYDFLKSILH 177

Query: 180 DDAKIVGALKRAA--YLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFD 237
            D ++V A KR+   +L DV KYI P I+AL++IGV +S +  L+     V+    +KF 
Sbjct: 178 LDKRVVSAFKRSPRIFLEDVNKYIVPKITALQEIGVPESSVVFLITHYSNVVQVKHDKFH 237

Query: 238 ESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRC 297
           E VK V+ MGF P   VF+ A+  ++  +  TW+ K+ VY  WG S +E  L F+ +P C
Sbjct: 238 EIVKEVMEMGFDPLKMVFIKAIHVLAGMSKPTWEHKMEVYRRWGLSNHEIMLLFRAFPIC 297

Query: 298 MTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKEN 357
           M+LS + I + MDF +N+MGW+ +A+ +V + L+YSL++RIIPRCSV RVL LK L+K++
Sbjct: 298 MSLSEKKIMSTMDFLVNKMGWKLTAITKVPSTLSYSLEKRIIPRCSVARVLILKGLVKKD 357

Query: 358 FSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL 412
             L + +  +++ F D FV KYQ  +PQLL++F+G++ + ELG   E+  G KQL
Sbjct: 358 MGLGAFLRFTEKKFLDRFVIKYQNHIPQLLNLFKGEVGILELGFASEEICGVKQL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480035|ref|XP_002271799.2| PREDICTED: uncharacterized protein LOC100246295 [Vitis vinifera]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/395 (42%), Positives = 255/395 (64%), Gaps = 19/395 (4%)

Query: 8   CNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTIT 67
           C RL    +P   +  +S   L F+ +    P + + FS+           + +HSFT++
Sbjct: 7   CKRL--GSIPKG-WQADSKAQLHFLRNTT--PFIVRCFST-----------SNKHSFTVS 50

Query: 68  YLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRA 127
           YL+ SCGL P+ A S S K++FE P+ PD VL++LR  G ++ HI+K+V K P LL+   
Sbjct: 51  YLVNSCGLSPETAISASGKIHFENPKNPDSVLALLRNSGCTNTHITKIVTKFPSLLLVNP 110

Query: 128 DKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGA 187
           +KTLLPKLEFF S+G SG  LA +LSS P+IL RSL+  +IP Y FLKS+   +   +  
Sbjct: 111 EKTLLPKLEFFRSIGFSGAHLASILSSKPSILSRSLENNLIPKYNFLKSVHISNEDAMKV 170

Query: 188 LKRAAYLH--DVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIH 245
           LKR+ +    ++E+ I+ NI+ LR+IGV  S IS LV+     +C+ S+KF E+VK+V+ 
Sbjct: 171 LKRSCWSSSGNLEETIATNIAVLREIGVPISHISFLVVRY-HTICQRSDKFSENVKKVVE 229

Query: 246 MGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENI 305
           MGF+P    F++AL A   TT+ T +QK  +Y  WGWS++E  LAF+  P CM LS +++
Sbjct: 230 MGFNPLKFTFLNALQAFCQTTESTRQQKKEIYRRWGWSEDEILLAFRTRPECMRLSEKHV 289

Query: 306 NAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVI 365
              +DF +N+MGWQP+AV+R    +  + ++R++PRCSV++VL LK L+K++   S+ + 
Sbjct: 290 MKVLDFLVNKMGWQPAAVSRDPVAICLNFEKRVVPRCSVVKVLLLKGLVKKDMRSSTFLK 349

Query: 366 SSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELG 400
            ++  F D +V K+Q+ VPQLLD+++GK+  +ELG
Sbjct: 350 LTERDFLDKYVIKHQDNVPQLLDLYQGKVSFAELG 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438051|ref|XP_002271836.1| PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/355 (45%), Positives = 233/355 (65%), Gaps = 2/355 (0%)

Query: 60  KEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKC 119
           K+  FT++YLI SCGL PD A S S+K++  TPE+PD +LS+LR +G +D  + KL++  
Sbjct: 56  KQCYFTVSYLINSCGLSPDSALSASQKLHLVTPERPDSILSLLRNYGITDTQLPKLIRVF 115

Query: 120 PDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLS 179
           P LL+   +KTLLPKLEF  S   S   L  VLSS P IL RSL  QIIP Y F KS+L 
Sbjct: 116 PTLLLTDPEKTLLPKLEFLNSKPFSRADLGRVLSSCPMILSRSLDNQIIPCYNFFKSILH 175

Query: 180 DDAKIVGALKRAA--YLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFD 237
            D ++V A+KR+   +L DV K I PNI+AL++IGV +S I  L+   P V+    ++F 
Sbjct: 176 LDNRVVSAIKRSPRIFLEDVNKNIVPNITALQEIGVPESSIVFLITYYPIVVQLKHDRFG 235

Query: 238 ESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRC 297
           E+VK+V+ MGF P + VF+ A+      +  TW+QK+ VY  WGWS +E  L F+ +P C
Sbjct: 236 ETVKKVMEMGFDPLTVVFIKAIQVFGGMSKSTWEQKMEVYRRWGWSNDEIVLLFRAFPAC 295

Query: 298 MTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKEN 357
           M+LS + I + MDF +N+MGW+ + + R    L ++L++RIIPRC V +VL LK L+K++
Sbjct: 296 MSLSEKKIMSTMDFLVNKMGWKLTEITRFPISLGFNLEKRIIPRCWVGKVLMLKGLVKKD 355

Query: 358 FSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL 412
            SL + +  ++  F D FV KYQ  +PQLL++++G++ + ELG   E+  G KQL
Sbjct: 356 LSLGAFLRYTESKFLDRFVIKYQNHIPQLLNLYKGEVGVVELGFASEEIGGIKQL 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436753|ref|XP_002269809.1| PREDICTED: uncharacterized protein LOC100257975 [Vitis vinifera]

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 237/358 (66%), Gaps = 6/358 (1%)

Query: 58  QNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVK 117
           Q ++HSFT++YL+  CGLP   A S S+ V+FE+ E PD VL+ L+ HGFSD  I+KL+ 
Sbjct: 47  QQQQHSFTVSYLVNKCGLPLKTATSASQMVHFESSEGPDSVLAFLKNHGFSDTQIAKLIT 106

Query: 118 KCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSL 177
           + P L+    ++TLLPK+EFF S+GI G     +L+ NP I  RS+KK++ P Y F+KS+
Sbjct: 107 RRPRLVCSDPEETLLPKIEFFNSIGIRGPDFTRILTQNPNIWFRSVKKRLAPCYDFIKSV 166

Query: 178 LSDDAKIVGALKRA--AYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNK 235
           +  + K V  LK A    + D++  I+PNI+ LR  GV++S +  LV   P +L  TS K
Sbjct: 167 VLSEDKAVTTLKGAPRMLMCDMQTSIAPNIALLRKFGVSQSTLLFLVTGFPNLLLRTSAK 226

Query: 236 FDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYP 295
           F++ V+ V+ MGF P    FVHAL   +  +  + ++K+AVYS +GWS +E     K +P
Sbjct: 227 FEKHVREVLDMGFDPKKSEFVHALRVFAGISKLSRERKMAVYSRFGWSDHEILSVLKTHP 286

Query: 296 RCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIK 355
            C+ LS + I   +DF +N+MGWQ  AVARV  VL YSL +R+IPRC+V++VLQ + L+K
Sbjct: 287 MCLMLSEKKIMDGLDFLMNKMGWQRKAVARVPLVLCYSLNKRVIPRCAVVQVLQSEGLLK 346

Query: 356 E-NFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL 412
           E +F LSSV+I S++ F   FV KY+EQVPQLL++++GK+ L ELG   E   G KQL
Sbjct: 347 EADFYLSSVLIPSEKVFLARFVIKYEEQVPQLLNVYKGKLGLPELGFGSE---GMKQL 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438045|ref|XP_002271737.1| PREDICTED: uncharacterized protein LOC100256578 [Vitis vinifera]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/392 (42%), Positives = 256/392 (65%), Gaps = 18/392 (4%)

Query: 8   CNRLLLVRVPNARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTIT 67
           C RL L+      +  +STT L F+ +    P + + FS+           + +HSFT++
Sbjct: 68  CERLGLI---PKWWQADSTTQLHFLRNTT--PFIIRLFSA-----------SNQHSFTVS 111

Query: 68  YLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRA 127
           YL+KSCGL P+ A S S+K++FE P+ PD VL++LR+ G ++ HI+K+V K P LL+   
Sbjct: 112 YLVKSCGLSPETAISASEKIHFENPKNPDSVLALLRDSGCTNTHIAKIVTKLPSLLLVNP 171

Query: 128 DKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGA 187
           +KTLLPKLEFF S+G+S   LA +LSS P+IL +SL+K +IP + FLKS+  ++   +  
Sbjct: 172 EKTLLPKLEFFRSMGLSSADLASILSSEPSILNKSLEKVLIPKHNFLKSVHVNNEGAMKI 231

Query: 188 LKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMG 247
           LKR+++     K I+ NI+ LR+IGV  S IS LV+     +C+ S+KF E+VK+V+ MG
Sbjct: 232 LKRSSW-SSSGKTIAANIAVLREIGVPISHISFLVVRY-HTICQKSDKFSENVKKVVEMG 289

Query: 248 FSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINA 307
           F+P    FV+AL A    T+ T +QK+ +Y  WGWS++E   AF+  P+CM LS + +  
Sbjct: 290 FNPLKFTFVNALQAFCQMTESTRQQKMEMYRRWGWSEDEIVSAFRSRPQCMQLSEKKVTK 349

Query: 308 KMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISS 367
            +DF +N+MGWQP+ VAR    +  + ++R++PRCSV++VL LK L+K++  L   +  +
Sbjct: 350 VLDFLVNKMGWQPAVVARAPVAICLNFEKRVVPRCSVVKVLLLKGLVKKDLRLDHFLSLT 409

Query: 368 DEYFTDAFVTKYQEQVPQLLDIFRGKIELSEL 399
           +  F D +V KY++ +PQLLD+++GK++  EL
Sbjct: 410 EGNFLDKYVIKYEDDIPQLLDLYQGKLKAEEL 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559288|ref|XP_002520664.1| conserved hypothetical protein [Ricinus communis] gi|223540049|gb|EEF41626.1| conserved hypothetical protein [Ricinus communis]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/343 (47%), Positives = 230/343 (67%), Gaps = 3/343 (0%)

Query: 59  NKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKK 118
            KE+SFTI YL+++CGL  + A S S+K++ E+P++ D VL++LR+ GFS   IS LVKK
Sbjct: 58  TKENSFTIDYLVRACGLSLEAAVSASQKIHLESPKRADAVLALLRDRGFSKTQISSLVKK 117

Query: 119 CPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLL 178
            P LL+     TLLPKLEFF S+G S +ALA  LSS+P +L RSL+ QIIPSY FLKS+L
Sbjct: 118 RPFLLLAHPQNTLLPKLEFFYSIGASNSALARALSSDPTLLTRSLENQIIPSYNFLKSIL 177

Query: 179 SDDAKIVGALKRAA--YLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKF 236
             D KIV ALKR    +L D  K + PNI  LR+ GV  SCIS L+   P  L +  +KF
Sbjct: 178 LSDEKIVSALKRTTWIFLEDHSKNLIPNIELLREAGVLHSCISLLLTHFPEALMQRHDKF 237

Query: 237 DESVKRVIHMGFSPSSGVFVHALVAVSTTTDQT-WKQKVAVYSSWGWSQNEFWLAFKKYP 295
            + VK V  M F P    FV A+ A+S   +++ W +   VY  WGWS+++ + AFKK+P
Sbjct: 238 SKIVKEVREMEFDPKKSTFVLAVHAISGKGNKSIWNKCFEVYMRWGWSKDDIFAAFKKHP 297

Query: 296 RCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIK 355
            CM LS + I   MDF++N+MG+    +A+   VL +SL++RI+PRC VIRVL  K L+K
Sbjct: 298 HCMMLSEKKIMKAMDFFVNKMGFPSKVIAQCPVVLFFSLEKRIVPRCRVIRVLMNKRLVK 357

Query: 356 ENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSE 398
           E+ SL+SV++  ++ F D FVT++ E++P+LL ++ GK ++ E
Sbjct: 358 EDVSLASVLLPVEQCFLDRFVTRFAEEIPRLLSVYEGKRDVEE 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817761|emb|CAN68939.1| hypothetical protein VITISV_028994 [Vitis vinifera]

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 237/358 (66%), Gaps = 6/358 (1%)

Query: 58   QNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVK 117
            Q ++HSFT++YL+  CGLP   A S S+ V+FE+ E PD VL+ L+ HGFSD  I+KL+ 
Sbjct: 1221 QQQQHSFTVSYLVNKCGLPLKTATSASQMVHFESSEGPDSVLAFLKNHGFSDTQIAKLIT 1280

Query: 118  KCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSL 177
            + P L+    ++TLLPK+EFF S+GI G     +L+ NP I  RS+KK++ P Y F++S+
Sbjct: 1281 RRPRLVCSDPEETLLPKIEFFNSIGIRGPDFTRILTQNPNIWFRSVKKRLAPCYDFIRSV 1340

Query: 178  LSDDAKIVGALKRA--AYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNK 235
            +  + K V  LK A    + D++  I+PNI+ LR  GV++S +  LV   P +L  TS K
Sbjct: 1341 VLSEDKAVTTLKGAPRMLMCDMQTSIAPNIALLRKFGVSQSTLLFLVTGFPNLLLRTSAK 1400

Query: 236  FDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYP 295
            F++ V+ V+ MGF P    FVHAL   +  +  + ++K+AVYS +GWS +E     K +P
Sbjct: 1401 FEKHVREVLDMGFDPKKSEFVHALRVFAGISKLSRERKMAVYSRFGWSDHEILSVLKTHP 1460

Query: 296  RCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIK 355
             C+ LS + I   +DF +N+MGWQ  AVARV  VL YSL +R+IPRC+V++VLQ + L+K
Sbjct: 1461 MCLMLSEKKIMDGLDFLMNKMGWQRKAVARVPLVLCYSLNKRVIPRCAVVQVLQSEGLLK 1520

Query: 356  E-NFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIELSELGIEFEQNSGEKQL 412
            E +F LSSV+I S++ F   FV KY+EQVPQLL++++GK+ L ELG   E   G KQL
Sbjct: 1521 EADFYLSSVLIPSEKVFLARFVIKYEEQVPQLLNVYKGKLGLPELGFGSE---GMKQL 1575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.861	0.876	0.416	2.4e-76
TAIR|locus:2036868	418	AT1G61980 "AT1G61980" [Arabido	0.662	0.653	0.375	8.8e-57
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.834	0.882	0.349	1.6e-54
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.623	0.571	0.359	1.6e-40
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.677	0.667	0.333	5.3e-40
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.766	0.808	0.276	1.1e-39
TAIR|locus:2172798	457	AT5G23930 "AT5G23930" [Arabido	0.648	0.584	0.358	1.4e-39
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.643	0.606	0.343	2.3e-39
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.674	0.601	0.355	7.8e-39
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.623	0.557	0.393	1.6e-38

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 149/358 (41%), Positives = 236/358 (65%)

Query:    42 AKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSI 101
             + P +++ +   ++++Q ++ SFT+ YLI SCGL PD A   S+K+  ++PE+P+ VL++
Sbjct:    48 SSPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNL 107

Query:   102 LREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGR 161
             LR+HGF+   IS LVKK P LL+  A+  LLPKL FF S+G+S + LA  L+S+P IL R
Sbjct:   108 LRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTR 167

Query:   162 SLKKQIIPSYKFLKSLLSDDAKIVGALKRAA--YLHDVEKYISPNISALRDIGVTKSCIS 219
             SL  Q+IPSY FLKS+L  D KIV AL+R    +L D  K + PNI+ + + GV + CI 
Sbjct:   168 SLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIK 227

Query:   220 SLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQT-WKQKVAVYS 278
              L+   P  + + +++F    K+   MGF+P    FV A+ A+S   +++ W +   VY 
Sbjct:   228 LLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQ 287

Query:   279 SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRI 338
              WGWS+++   AFKK+P CM LS   IN  M++++N+M   P ++A+   VL +SL++RI
Sbjct:   288 RWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRI 347

Query:   339 IPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIEL 396
             IPRCSV +VL    L+KE++SL+S+++  ++ F +  V KY+E++P+L++++ G  +L
Sbjct:   348 IPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLGCTKL 405

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2036868 AT1G61980 "AT1G61980" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 104/277 (37%), Positives = 153/277 (55%)

Query:    29 LRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVN 88
             LR ++   + PL +  FSS  A         K  SFT++YL+ S GLP  +A S+S+KV+
Sbjct:    20 LRVLVQKAS-PL-SNSFSSASAARLSPRVGRKGKSFTVSYLVDSLGLPKKLAESVSRKVS 77

Query:    89 FETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTAL 148
             FE  + PD VL++LR HGF+D  IS +V   P LLV  A+K+L PKL+F  S G S + L
Sbjct:    78 FEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLVADAEKSLAPKLQFLQSRGASSSEL 137

Query:   149 ADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISAL 208
              +++S+ P ILG+   K I   Y F+K  L D +       +     ++E  I  N+S L
Sbjct:   138 TEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSKSEKSCQPFPQGNLENKIR-NLSVL 196

Query:   209 RDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQ 268
             R++G+    +  L+IS   V      KF+ES+K+V+ MGF PS+  FV AL  V   +D+
Sbjct:   197 RELGMPHKLLFPLLISCD-VPVFGKEKFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDK 255

Query:   269 TWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENI 305
               + KV  Y   G+     W  FK++P  +T S + I
Sbjct:   256 NIEDKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKI 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 122/349 (34%), Positives = 201/349 (57%)

Query:    47 SIVAVTCEN-EKQNK-EHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104
             S+  V  EN EKQ     SFT++YL+ SCGL  + A S S+ V   + +KPD VL++ ++
Sbjct:    38 SVSQVKSENLEKQKPCLESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKD 97

Query:   105 HGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLK 164
             HGF++  I+ ++K  P +L    +  + PKL FF+S+G S +  A ++SS+P +L  SL 
Sbjct:    98 HGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLH 157

Query:   165 KQIIPSYKFLKSLLSDDAKIVGALKRA--AYLHDVEKYISPNISALRDIGVTKSCISSLV 222
             K++IP Y  LKS+L ++  +V  LKR    +   +   +S  +S  R++GV    I  LV
Sbjct:   158 KRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLV 217

Query:   223 ISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGW 282
              ++P        +F+E + RV   GF P    FVHA+VA   T++   ++K  ++  +GW
Sbjct:   218 QASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGW 277

Query:   283 SQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRC 342
             S+ +F  A  ++P C+T+S E I   +++ +N +G Q   +     VL+ S+++RI PR 
Sbjct:   278 SKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRN 337

Query:   343 SVIRVLQLKDLIK-ENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIF 390
              VI +L  K L+K E+ +  +++      F D FV KYQ+++PQL+  F
Sbjct:   338 QVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPF 386

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 96/267 (35%), Positives = 154/267 (57%)

Query:    39 PLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLV 98
             P   K FSS +A     +   K  +FT++YL++S GL   +A ++SKKV FE    PD V
Sbjct:    32 PFTTKSFSSTIA----KDSSPKGSTFTVSYLVESLGLTKKLAETISKKVTFEDKVNPDSV 87

Query:    99 LSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAI 158
             L++LR +GF D  IS++++  P LLV  A+K+L PKL+F  S G S + + +++S+ P I
Sbjct:    88 LNLLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTI 147

Query:   159 LGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCI 218
             L +  ++ +   Y F+K ++ D   +  +       + +      NIS LR++GV +  +
Sbjct:   148 LDKKGEESVSLYYDFVKDIMQDGKSLCISCPEGKKGNRIR-----NISVLRELGVPQKLL 202

Query:   219 SSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS 278
              SL+IS    +C    KF+ES+K+V+ MGF P+   FV AL  V   +++T ++KV VY 
Sbjct:   203 FSLLISRYQPVCG-KEKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYK 261

Query:   279 SWGWSQNEFWLAFKKYPRCMTLSVENI 305
               G+S+ E W  FKK+P  +  S + I
Sbjct:   262 RLGFSEAEIWAIFKKWPYFLKFSEKKI 288

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 94/282 (33%), Positives = 162/282 (57%)

Query:    45 FSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104
             FSS  A         K ++FT++YL+ S GL   +A S+S+KV+FE    PD VL++L  
Sbjct:    34 FSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTS 93

Query:   105 HGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLK 164
             HGF+   IS +++  P LL+  A+K+L PKL+F  S G S + + +++SS P ILG+   
Sbjct:    94 HGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGH 153

Query:   165 KQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVIS 224
             K I   Y F+K  L + +     L  +    ++E  I  N+S LR++G+    + SL+IS
Sbjct:   154 KTISVYYDFIKDTLLEKSSKNEKLCHSLPQGNLENKIR-NVSVLRELGMPHKLLFSLLIS 212

Query:   225 NPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQ 284
             +   +C    KF+E++K+V+ MGF P++  FV AL  +    ++T ++KV +Y S G+  
Sbjct:   213 DSQPVCG-KEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDV 271

Query:   285 NEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARV 326
              + W +FKK+P  + +S + +   ++ ++  +G+     A++
Sbjct:   272 GDVWSSFKKWPISLRVSEKKMLDSIETFLG-LGFSRDEFAKM 312

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 91/329 (27%), Positives = 192/329 (58%)

Query:    70 IKSCGLPPDVAASLSKKV-NFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRAD 128
             ++  G    +A +++ +  N ++ E+P  V+ +L+ + FSD  I K ++  P ++    +
Sbjct:    45 LRDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQKSIRVHPRMMFYNVE 104

Query:   129 KTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLS---DDAKIV 185
             K L PKL FF  +G +G+ L   +S N +++G SL K++IP+ + LKS+++   +D  ++
Sbjct:   105 KILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVI 164

Query:   186 GALKRAAYL---HDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKR 242
               L R  +L    D   ++ PNIS L   G+  S ++SL+   P +   +  K    V R
Sbjct:   165 --LSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSR 222

Query:   243 VIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSV 302
              + +GF+ +S + VHA++++S+ +++T+ +KV ++ + G+S++E     ++ P  +  S 
Sbjct:   223 ALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSE 282

Query:   303 ENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLI----KENF 358
             + +    +FY+ +MG +  A+A+   VL+Y+L++R+IPR  V+++L+ K L+    K+  
Sbjct:   283 DKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKK 342

Query:   359 SLSSVVISSDEYFTDAFVTKYQEQVPQLL 387
             ++  +V  ++E F + +V ++ +++ + L
Sbjct:   343 NMVGIVEMTEEAFLEKYVVRFGDEIAEEL 371

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172798 AT5G23930 "AT5G23930" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 99/276 (35%), Positives = 147/276 (53%)

Query:    37 NRPLVAKPFSSIVAVTCEN--EKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEK 94
             N     + FSS+V  T +   E + K  +FT++YLI S GL   +A S+S K NF+    
Sbjct:    27 NSSAFTESFSSVVTTTKDLSLEDERKRKTFTVSYLIDSLGLTTKLAESISMKANFDEKGN 86

Query:    95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSS 154
             PD VL +LR +GF D  IS ++   P  L+   +KTL  KL F    G S + L +++S 
Sbjct:    87 PDSVLKLLRSYGFKDSQISSIISTYPRFLIENPEKTLRAKLHFLKLNGASSSELTEIVSK 146

Query:   155 NPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVT 214
              P ILG+   K I   Y ++K +L D      + KR       +   + N+S LR +GV 
Sbjct:   147 VPKILGKRGGKWISHYYDYVKEILQDQDSSSSSSKRK------QTNRNRNVSVLRKLGVP 200

Query:   215 KSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKV 274
             +  + +L+IS    +C    +F+ESVK+++ MGF P S  FV+AL      +D+T ++KV
Sbjct:   201 QRLLLNLLISRAKPVCG-KERFEESVKKIVEMGFDPKSPKFVNALYVFYELSDKTIEEKV 259

Query:   275 AVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMD 310
               Y   G S NE W  FKK+P  +  S +NI  K +
Sbjct:   260 NAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFE 295

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 93/271 (34%), Positives = 154/271 (56%)

Query:    46 SSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREH 105
             SS +A    +    K H+FT++YL+ S GL   VA S+S KV+F+    PD VLS+LR H
Sbjct:    39 SSAIAADVSSRDGRKGHNFTVSYLVDSLGLATKVAESISMKVSFDNKGNPDSVLSLLRSH 98

Query:   106 GFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKK 165
             GF+D  IS +++  P LL+  A+K+L PKL+F  S+G S + L + +S+ P ILG+   K
Sbjct:    99 GFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGK 158

Query:   166 QIIPSYKFLKSLLSDDAKIVGALKRAAY-LHDVEKYISP--NISALRDIGVTKSCISSLV 222
              +   Y F+K ++  D      L++  + L +  K  +   N+  LR++GV +  + SL+
Sbjct:   159 SLSRYYDFVKVIIEADKS--SKLEKLCHSLPEGSKQENKIRNLLVLREMGVPQRLLFSLL 216

Query:   223 ISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGW 282
             IS+ G +C    KF ES+K+ + +GF P++  FV AL  +   +D+  + K       G 
Sbjct:   217 ISDAGDVCG-KEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNACKRLGL 275

Query:   283 SQNEFWLAFKKYPRCMTLSVENINAKMDFYI 313
             + ++ W  FKK+P  +T S + I   ++ ++
Sbjct:   276 AVDDVWAMFKKWPNILTKSEKKIENSVETFL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 101/284 (35%), Positives = 158/284 (55%)

Query:    29 LRFVLHNVNRPLVAKPFSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVN 88
             LRFV+ N +    +  +SS  A    +    K  +FT++YL+ S GL   +A S+SKKV+
Sbjct:    20 LRFVVQNGSA--FSNSYSSASATDLSSRDGRKVKNFTVSYLVDSLGLATKLAESISKKVS 77

Query:    89 FETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTAL 148
             F     PDLVLS+ R +GF++  IS ++   P LL+  A+K+L  KL+F  S G S   L
Sbjct:    78 FVNKGNPDLVLSLFRSYGFTNSQISSIITDYPRLLLIDAEKSLDIKLQFLESRGASSPEL 137

Query:   149 ADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDD--AKIVGALKRAAYLHDVEKYISPNIS 206
               ++S+ P ILG    K +   Y F+K ++  D  +K     +     +     I  N+S
Sbjct:   138 TQIVSTVPKILGMKEGKSLGRYYDFVKEIIEADKSSKYETLCQPLPEANRQGNKIR-NVS 196

Query:   207 ALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTT 266
              LRD+GV +  + SL+IS+   +C   N F+ES+K+V+ MGF P++  FV AL AV   T
Sbjct:   197 VLRDLGVPQKLLFSLLISDAQPVCGKEN-FEESLKKVVEMGFDPTTSKFVQALRAVYRFT 255

Query:   267 DQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMD 310
             D+T +++V VY  +G++  + W  FKK P  +  S + I   ++
Sbjct:   256 DKTIEERVNVYKGFGFAVEDVWAMFKKCPYFLNSSEKKIGQTIE 299

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 103/262 (39%), Positives = 146/262 (55%)

Query:    45 FSSIVAVTCENEKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILRE 104
             FS   A         K  SF+++YL+ S GLP  VA S+SKKV+FE    PD VLS+LR 
Sbjct:    37 FSYANATDASLRAGRKGLSFSVSYLVDSLGLPKKVAESISKKVSFEDKGNPDSVLSLLRS 96

Query:   105 HGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLK 164
             HGF+D  IS ++   P LLV  A+K++ PKL+F  S G S + L  ++S+ P ILG+   
Sbjct:    97 HGFTDSQISSIITDYPQLLVADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGD 156

Query:   165 KQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISP--NISALRDIGVTKSCISSLV 222
             K I   Y F+K ++  D K     K    L +  K  +   N+  LR++GV +  +  L+
Sbjct:   157 KTISIYYDFVKEIIEAD-KSSKFEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLL 215

Query:   223 ISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGW 282
             IS+   +C   N F+ES+K+V+ MGF P++  FV AL  V    D+T + KV V  S G+
Sbjct:   216 ISDHQPVCGKEN-FEESLKKVVEMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGF 274

Query:   283 SQNEFWLAFKKYPRCMTLSVEN 304
             S  + W  FKK P  +  S EN
Sbjct:   275 SVGDVWAMFKKCPSFLNFS-EN 295

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023571001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (398 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
pfam02536	345	pfam02536, mTERF, mTERF	6e-32
pfam02536	345	pfam02536, mTERF, mTERF	6e-28
pfam02536	345	pfam02536, mTERF, mTERF	5e-10
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-07

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  123 bits (311), Expect = 6e-32
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 5/211 (2%)

Query: 99  LSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAI 158
           LS+LR  GF+D  IS +++  P LL   A+K L PKL+F  S G S + L  ++S+ P I
Sbjct: 1   LSLLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKI 60

Query: 159 LGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRA--AYLHDVEKYISPNISALRDIGVTKS 216
           LG+   K I   Y FLK ++  D      L++   +           N+S LR++GV   
Sbjct: 61  LGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPK 120

Query: 217 CISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHAL--VAVSTTTDQTWKQKV 274
            + SL+IS P  +C     F+ES+K+V+ MGF P++   V A     +  ++D+T K  V
Sbjct: 121 LLFSLLISRPRPVCGKEV-FEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNV 179

Query: 275 AVYSSWGWSQNEFWLAFKKYPRCMTLSVENI 305
               S G+S  + W   KK P  +  S +  
Sbjct: 180 EFLKSLGFSVEDVWAILKKCPELLGSSEKKK 210

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  112 bits (282), Expect = 6e-28
 Identities = 62/277 (22%), Positives = 123/277 (44%), Gaps = 8/277 (2%)

Query: 98  VLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTAL-ADVLSSNP 156
           V   L++   +D   S  ++K P+ L +  +   +  +     +G+    L + ++S   
Sbjct: 72  VYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPR 131

Query: 157 AILGRSLKKQIIPSYKFLKSLLSD--DAKIVGALKRAAYLHDVEKYISPNISALRDIGVT 214
            + G+ + +    S K +  +  D    K V A +    L+  +K I PN+  L+ +G +
Sbjct: 132 PVCGKEVFE---ESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFS 188

Query: 215 KSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKV 274
              + +++   P +L  +S K     + ++           +  +    + ++Q    K+
Sbjct: 189 VEDVWAILKKCPELL-GSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKI 247

Query: 275 AVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSL 334
                 G+S+ E     K+ P+ + LSVE +  K +F + +M W    +     V  YSL
Sbjct: 248 EFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELVEFPQVFGYSL 307

Query: 335 KRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYF 371
           ++RI PRC+V++ L  K       SLSS++  +DE F
Sbjct: 308 EKRIKPRCNVVKALMSKGKSIL-PSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 56  EKQNKEHSFTITYLIKSCGLPPDVAASL--SKKVNFETPEKPDLVLSILREHGFSDKHIS 113
           +  N      ++ L +  G+PP +  SL  S+       E  +  L  + E GF      
Sbjct: 99  QGNNGNKIRNVSVL-RELGVPPKLLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFK 157

Query: 114 KLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKF 173
           +++ K P LL+  +DKT+ P +EF  S+G S   +  +L   P +LG S KK++      
Sbjct: 158 RVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEIL 217

Query: 174 LKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSLVISNPGVLC 230
               L +   ++   K   ++   E+ I   I  L  +G ++  I+ +V   P +L 
Sbjct: 218 KTCGLLEFLSVIK--KMPQFVSYSEQKILNKIEFLLGLGFSREEIAKMVKRCPQLLG 272

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 27/287 (9%)

Query: 98  VLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPA 157
           V+  L+      + I +++++ P+LL  + + T+   + +  S+G++   +  +L+  P 
Sbjct: 163 VVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPE 222

Query: 158 ILGRSLKKQIIPSYKFLKSL---LSDDAKIVGALKRAAYL-HDVEKYISPNISALRDIGV 213
           ILG  +   I P   +L+SL       A+I+   KR   L  D+E+ + PN+  L + GV
Sbjct: 223 ILGMRVGNNIKPKVDYLESLGLPRLAVARILE--KRPYILGFDLEETVKPNVECLLEFGV 280

Query: 214 TKSCISSLVISNPGVL-------CETSNKFDESVKRVIHMGFSPSS--GVFVHALVAVST 264
            K  + S++   P +L             +  S      +   P     V       VS 
Sbjct: 281 RKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSK-----LKIDPEDFGRVIEKLPQIVSL 335

Query: 265 TTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVA 324
             +   K  V      G+S  +      + P+ + L++E +   ++F+  +M      + 
Sbjct: 336 NRNVALK-HVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELV 394

Query: 325 RVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYF 371
                  Y L+ RI PR      +  K +     SL+  +  SD+ F
Sbjct: 395 EFPAYFTYGLESRIKPR---YERVAKKGI---KCSLAWFLNCSDDKF 435

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.66
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.13
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.87
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	91.51
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	86.97
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	86.13

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=6.8e-57  Score=463.53  Aligned_cols=333  Identities=18%  Similarity=0.288  Sum_probs=290.4

Q ss_pred             hHHHhHHhcCCCHHHHHhhhcccccCCC-CChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCC
Q 015151           65 TITYLIKSCGLPPDVAASLSKKVNFETP-EKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGI  143 (412)
Q Consensus        65 ~v~yL~~s~Gls~~~a~~~~~~l~l~~~-~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGl  143 (412)
                      .++|| .++||+.+++.+ .+.+...++ +++.++++||+++|+++++|+++|.++|++|.++++++|.|+++||+++|+
T Consensus        95 ~l~~L-~s~G~~~~~i~~-~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGv  172 (487)
T PLN03196         95 RVEFL-HKLGLTIEDINE-YPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDV  172 (487)
T ss_pred             HHHHH-HHcCCChHHhcc-CcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCC
Confidence            45788 799999999973 455544444 679999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHHHcCCChhhhhhh
Q 015151          144 SGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVTKSCISSL  221 (412)
Q Consensus       144 s~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~~~~i~~l  221 (412)
                      +.++|++++.++|++|+++++++|.|+++||.++|++.+++.+++.++|++  ++++++++|+++||+++|++.++|.++
T Consensus       173 s~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~i  252 (487)
T PLN03196        173 KRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARI  252 (487)
T ss_pred             CHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998  889889999999999999999999999


Q ss_pred             cccCCcceeeccc-chHHHHHHHHHcCCCCCchhH--------------------------------------HHHHHHH
Q 015151          222 VISNPGVLCETSN-KFDESVKRVIHMGFSPSSGVF--------------------------------------VHALVAV  262 (412)
Q Consensus       222 l~~~P~il~~s~~-~~~~~v~~l~~lG~~~~~~~~--------------------------------------~~a~~~l  262 (412)
                      +.++|++|+++.+ ++++++++++++|++++...+                                      +.+.+.+
T Consensus       253 l~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~i  332 (487)
T PLN03196        253 LEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQI  332 (487)
T ss_pred             HHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchh
Confidence            9999999999976 789999999999887654221                                      1122345


Q ss_pred             HhCChHHHHHHHHHHHhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhH
Q 015151          263 STTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRC  342 (412)
Q Consensus       263 ~~~s~~~l~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~  342 (412)
                      ...++++|++|++||+++||+.+||..||+++|++|++|+++|++|++||+++||++.++|+++|++|+||||+||+|||
T Consensus       333 l~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        333 VSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             hcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccCCcCccchhccchhHHHHHhcccCCC-ChhHHHHHHHhccccccccceecc
Q 015151          343 SVIRVLQLKDLIKENFSLSSVVISSDEYFTDAFVTKYQE-QVPQLLDIFRGKIELSELGIEFEQ  405 (412)
Q Consensus       343 ~~l~~L~~kGl~~~~~~l~~~l~~sd~~F~~~~v~~~~e-~~p~l~~~y~~~~~~~~~~~~~~~  405 (412)
                      ++   |+++|+   ++++.+++++||++|+++||.+|.| +..+-.-...|+....+-.-++|+
T Consensus       413 ~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~  470 (487)
T PLN03196        413 ER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDE  470 (487)
T ss_pred             HH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhcccccccCCCcccCCcccCCCCccccCc
Confidence            86   569999   7899999999999999999999986 334444456666665554444443

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=2.1e-47  Score=380.18  Aligned_cols=303  Identities=27%  Similarity=0.448  Sum_probs=168.3

Q ss_pred             HHHhHHhcCCCHHHHHhhh---cccccCC-CCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhC
Q 015151           66 ITYLIKSCGLPPDVAASLS---KKVNFET-PEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASV  141 (412)
Q Consensus        66 v~yL~~s~Gls~~~a~~~~---~~l~l~~-~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~l  141 (412)
                      +.|| .+.|+|..++.++.   +.+...+ .+++.++++||+++|.+++|+.+++.++|++|..+.+.++.|.++||.++
T Consensus        37 ~~fl-~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~l  115 (345)
T PF02536_consen   37 LEFL-RSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSL  115 (345)
T ss_dssp             HHHH-HHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHT
T ss_pred             HHHH-HHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhc
Confidence            3444 34455544444431   2222222 23444444555554544444444444455444444443444455555555


Q ss_pred             CCCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHHHcCCChhhhh
Q 015151          142 GISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVTKSCIS  219 (412)
Q Consensus       142 Gls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~~~~i~  219 (412)
                      |++.+.+.+++...|.++...  +++.+.++++.++|++++++.+++.++|++  .+.++.++|++++|+++|++.+++.
T Consensus       116 Gv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~  193 (345)
T PF02536_consen  116 GVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIG  193 (345)
T ss_dssp             T--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHH
T ss_pred             CCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhcccccccchhhccccHHHHHHHHHHHHhhcccchhhh
Confidence            554444444444444433332  344455555555555555555555555532  4444445555555555555555555


Q ss_pred             hhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHHhcCCCHHHHHHHHHhCCcccc
Q 015151          220 SLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMT  299 (412)
Q Consensus       220 ~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~~lG~s~eev~~~i~~~P~iL~  299 (412)
                      +++.++|+++..+.+++.+.+.++.+.|...++ .++...+.++..+.+++.+++++|+++|||++||.+|+.++|++|+
T Consensus       194 ~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~-~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~  272 (345)
T PF02536_consen  194 KLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE-RVIKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILS  272 (345)
T ss_dssp             HHHHHTTTGGGCGCHC----------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGG
T ss_pred             HHhhcccceeccccccccccccccccccccccc-ccccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhh
Confidence            555555555555554433333333333322222 3333344455566889999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhHHHHHHHHHcCCccCCcCccchhccchhHHHH
Q 015151          300 LSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEYFTD  373 (412)
Q Consensus       300 ~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~~~l~~~l~~sd~~F~~  373 (412)
                      +|+++|++|++||.++||++.++|+++|++|+||+|+||+|||+++++|+++|+ +.++++.+++.+||++|++
T Consensus       273 ~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  273 YSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             S-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             cchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            999999999999999999999999999999999999999999999999999997 6789999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.4e-43  Score=362.00  Aligned_cols=299  Identities=17%  Similarity=0.290  Sum_probs=251.7

Q ss_pred             hHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCC
Q 015151           65 TITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGIS  144 (412)
Q Consensus        65 ~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls  144 (412)
                      .++|| +++|++..++.+...   -.+.+.+.++++||+++||+++||.    ++|.+|.+++++++.|+++||+++|++
T Consensus        66 ~~~~L-~~lgi~~~~l~~~~~---p~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s  137 (487)
T PLN03196         66 VLDFL-RGIGIDPDELDGLEL---PSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVT  137 (487)
T ss_pred             HHHHH-HHcCCCchhhhccCC---CccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCC
Confidence            44999 699999999977431   1344678899999999999999987    799999999999999999999999999


Q ss_pred             chhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHHHcCCChhhhhhhc
Q 015151          145 GTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVTKSCISSLV  222 (412)
Q Consensus       145 ~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~~~~i~~ll  222 (412)
                      +++|+++|.++|.+|.++++++|.|+++||+++|++++++.+++.++|++  +++++++.|+++||+++|++.++|.+++
T Consensus       138 ~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il  217 (487)
T PLN03196        138 RSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPML  217 (487)
T ss_pred             HHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998  8999999999999999999999999999


Q ss_pred             ccCCcceeeccc-chHHHHHHHHHcCCCCCch--hHHHHHHHHH-----------------------------------h
Q 015151          223 ISNPGVLCETSN-KFDESVKRVIHMGFSPSSG--VFVHALVAVS-----------------------------------T  264 (412)
Q Consensus       223 ~~~P~il~~s~~-~~~~~v~~l~~lG~~~~~~--~~~~a~~~l~-----------------------------------~  264 (412)
                      .++|++|+++.+ ++.++++|++++|++.++.  .+...+..++                                   +
T Consensus       218 ~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~  297 (487)
T PLN03196        218 TRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILG  297 (487)
T ss_pred             HhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeE
Confidence            999999999976 6899999999999987642  1222211111                                   1


Q ss_pred             C-ChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHH----hhcccccccCCCCce
Q 015151          265 T-TDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAV----ARVATVLAYSLKRRI  338 (412)
Q Consensus       265 ~-s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I----~~~P~lL~~Sle~ri  338 (412)
                      . .+++++++++|+. ++||+.+++..++.++|+++++|++++++|++||.+ +||+.++|    .++|.+|+||.+ .|
T Consensus       298 ~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~l  375 (487)
T PLN03196        298 LDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-IM  375 (487)
T ss_pred             ecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-HH
Confidence            1 1345666777775 788888888888888888888888889999999987 99998887    589999999995 89


Q ss_pred             ehhHHHHHHHHHcCCccCC-cCccchhccc-hhHHHHHh
Q 015151          339 IPRCSVIRVLQLKDLIKEN-FSLSSVVISS-DEYFTDAF  375 (412)
Q Consensus       339 ~pR~~~l~~L~~kGl~~~~-~~l~~~l~~s-d~~F~~~~  375 (412)
                      +++..++.  .++|.-..+ +..+.+|.+| |++-..||
T Consensus       376 ~~k~dFlv--neMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        376 KPSLEFFK--KEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             HHHHHHHH--HHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            99888643  446663322 3567888888 66777776

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3e-38  Score=314.40  Aligned_cols=271  Identities=35%  Similarity=0.583  Sum_probs=217.5

Q ss_pred             HHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhc
Q 015151           99 LSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLL  178 (412)
Q Consensus        99 l~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg  178 (412)
                      .++|+++||+++||.++++++|.+|.+++++++.|+++||.++|++.+||+++++++|.+|..+++++|.|.++||+++|
T Consensus         1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHcccc--ccccccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhH-
Q 015151          179 SDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVF-  255 (412)
Q Consensus       179 ~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~-  255 (412)
                      ++++++.+++.++|++  .+.+.++.+++.+|+++|++.+.+..++...|..+... +++++.++++.++|+++++..+ 
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhhccc
Confidence            9999999999999998  66666899999999999999998888888888877766 8999999999999999998654 


Q ss_pred             -HHHHHHHHhCChHHHHHHHHHHHhcCCCHHHHHHHHHhCCcccccCHH-------------------------------
Q 015151          256 -VHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVE-------------------------------  303 (412)
Q Consensus       256 -~~a~~~l~~~s~~~l~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~-------------------------------  303 (412)
                       ...+..+...+++.|+++++||+++||+.+++.+++.++|+++..|.+                               
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~  239 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLS  239 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THH
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccc
Confidence             444558888899999999999999999999999999999999998865                               


Q ss_pred             --HHHHHHHHHHHhhCCChHHH----hhcccccccCCCCceehhHHHHHHHHHcCCccCC-cCccchhccc-hhHHHHH
Q 015151          304 --NINAKMDFYINQMGWQPSAV----ARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKEN-FSLSSVVISS-DEYFTDA  374 (412)
Q Consensus       304 --~L~~k~~fL~~~mg~~~~~I----~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~-~~l~~~l~~s-d~~F~~~  374 (412)
                        +++++++||.+ +|++.++|    .++|++|++|.|+ ++|+..++.  .+.|+...+ +..+.+|.+| |++-..|
T Consensus       240 ~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~--~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  240 EEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLV--KEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHH--HCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             hHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHH--HHhCcCHHHHhhCCceeEechhhhhhhH
Confidence              48999999998 99999886    4799999999995 999988643  346664332 3567888888 4566666

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.97  E-value=3.9e-30  Score=262.06  Aligned_cols=281  Identities=29%  Similarity=0.485  Sum_probs=247.9

Q ss_pred             ccCCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHH
Q 015151           58 QNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEF  137 (412)
Q Consensus        58 ~~~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~f  137 (412)
                      ..++.+|++.|+++++|++...|..+++.+......++++++++|+++|+++.++.+++..+|+++..+.++.+.|++.+
T Consensus        54 ~~~~~~f~~s~~~~s~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~  133 (413)
T KOG1267|consen   54 ELKGSNFESSYLVDSLGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRL  133 (413)
T ss_pred             cccCCCcceeeeccccccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhh
Confidence            44555899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhc--CChHHHHHHHHHccccccccccccchHHHHHHcCCCh
Q 015151          138 FASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLL--SDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTK  215 (412)
Q Consensus       138 L~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg--~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~lGv~~  215 (412)
                      |.+.|++.+++++++...|.+|..+.+.++.+.++|+++++  .....+.+.+...|.....+..+. ++++++++|+.+
T Consensus       134 l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~-~~~~~~~lg~~~  212 (413)
T KOG1267|consen  134 LDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVE-RLDIRRELGVKP  212 (413)
T ss_pred             hhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccc-cchhhHHhCCCH
Confidence            99999999999999999999999888889999999999985  666677777777775422222355 999999999999


Q ss_pred             hhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHHhcCCCHHHHHHHHHhCC
Q 015151          216 SCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYP  295 (412)
Q Consensus       216 ~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~~lG~s~eev~~~i~~~P  295 (412)
                      ..+..++...|..+.... .+...+.++.++|++|.+.+++.|+..+...+++++++|+++|+++||+.+||..|+.++|
T Consensus       213 ~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P  291 (413)
T KOG1267|consen  213 RLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCP  291 (413)
T ss_pred             HHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence            999999999999998765 7888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCHHH----------------------------HHHHHHHHHHhhCCChHHHh----hcccccccCCCCceehhH
Q 015151          296 RCMTLSVEN----------------------------INAKMDFYINQMGWQPSAVA----RVATVLAYSLKRRIIPRC  342 (412)
Q Consensus       296 ~iL~~S~~~----------------------------L~~k~~fL~~~mg~~~~~I~----~~P~lL~~Sle~ri~pR~  342 (412)
                      +++++|+++                            ++++++|+.. .|++..+++    ++|++++||+++ +.++.
T Consensus       292 ~~l~~s~~~~~~~~~~~~~~~~~~~k~p~~l~~s~~~l~~~ie~l~~-~g~~~~q~~~~~~~~Pq~l~~s~~~-~~~~~  368 (413)
T KOG1267|consen  292 QILGYSVKKNLKTTEYLLKNPKHILKFPQLLRSSEDKLKPRIEFLLS-LGFSDVQILEMVKRFPQYLSFSLEK-ILKRK  368 (413)
T ss_pred             hheEeehhhhhHHHHHHHhcchhhhhhhhhhhccchhhhhhHHHHHH-cCCcHHHHHHHHhhccHHhhhhHHh-hhhhh
Confidence            999999874                            7788888887 687766654    468888888886 44444

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.66  E-value=3.7e-16  Score=159.47  Aligned_cols=282  Identities=19%  Similarity=0.338  Sum_probs=231.4

Q ss_pred             CCCchHHHhHHhcCCCHHHHHhhh---cccccCCC-CChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHH
Q 015151           61 EHSFTITYLIKSCGLPPDVAASLS---KKVNFETP-EKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLE  136 (412)
Q Consensus        61 ~~~~~v~yL~~s~Gls~~~a~~~~---~~l~l~~~-~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~  136 (412)
                      ..+..+--++++.|++..++.++.   +++...++ .-+.+.+.+|+..|++..++.++++..|.+|...-+.++.+.++
T Consensus        89 ~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~  168 (413)
T KOG1267|consen   89 VNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIE  168 (413)
T ss_pred             cCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHH
Confidence            344566334489999999999974   34433333 44677788999999999999999999999998877789999999


Q ss_pred             HHHhCC--CCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHc-----------------------
Q 015151          137 FFASVG--ISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRA-----------------------  191 (412)
Q Consensus       137 fL~~lG--ls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~-----------------------  191 (412)
                      |+++++  ...+.+.++....|.....  ++.+. ++++++++|...+.+...+..+                       
T Consensus       169 ~l~~~~~~~~~s~~~~~~~~~~~~~~~--~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~~l~~~~~~i~~~g~~  245 (413)
T KOG1267|consen  169 FLKSIPPELLSSVVERLLTPVPSFLLN--ENSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYLKLKARLPFLLTLGFD  245 (413)
T ss_pred             HhhccchhhhhhHHHHhcccccccccc--ccccc-cchhhHHhCCCHHHHHHHHhcCccceeeehhhhhhhhhHHHhccC
Confidence            999974  7888888877777643322  12233 7777777777776666433333                       


Q ss_pred             ---------ccc--ccccccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHH
Q 015151          192 ---------AYL--HDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALV  260 (412)
Q Consensus       192 ---------P~l--~s~e~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~  260 (412)
                               |.+  ++.++++++++++|+++|++.++|..++.++|++++++.+++...++++.+.  .++    +...+
T Consensus       246 p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~----~~k~p  319 (413)
T KOG1267|consen  246 PKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH----ILKFP  319 (413)
T ss_pred             CchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh----hhhhh
Confidence                     333  3588899999999999999999999999999999999999999999998776  222    44445


Q ss_pred             HHHhCChHHHHHHHHHHHhcCCCHHHHHHHHHhCCcccccCHH-HHHHHHHHHHHhhCCChHHHhhcccccccCCCCcee
Q 015151          261 AVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVE-NINAKMDFYINQMGWQPSAVARVATVLAYSLKRRII  339 (412)
Q Consensus       261 ~l~~~s~~~l~~kv~~l~~lG~s~eev~~~i~~~P~iL~~S~~-~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~  339 (412)
                      .+...++..+.++++++..+|++.+|+..|++++|+++.+|.+ .++.+.+|+.+.|+++.++++.+|.++.|++|+|+.
T Consensus       320 ~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~  399 (413)
T KOG1267|consen  320 QLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIR  399 (413)
T ss_pred             hhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcch
Confidence            5568899999999999999999999999999999999999988 899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHc
Q 015151          340 PRCSVIRVLQLK  351 (412)
Q Consensus       340 pR~~~l~~L~~k  351 (412)
                      ||+.++..+..+
T Consensus       400 pr~~~~~~~~~~  411 (413)
T KOG1267|consen  400 PRFNVIKKLGVK  411 (413)
T ss_pred             hHHHHHHHHhcc
Confidence            999998866543

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.13  E-value=0.00042  Score=42.99  Aligned_cols=30  Identities=23%  Similarity=0.598  Sum_probs=26.7

Q ss_pred             HHHHhCCcccccCHHHHHHHHHHHHHhhCCC
Q 015151          289 LAFKKYPRCMTLSVENINAKMDFYINQMGWQ  319 (412)
Q Consensus       289 ~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~  319 (412)
                      .++.++|+++++|+++|+++++||. .+|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4688999999999999999999999 58874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.87  E-value=0.0007  Score=41.95  Aligned_cols=28  Identities=39%  Similarity=0.744  Sum_probs=17.7

Q ss_pred             HHHhCCcccccCccccHHHHHHHHHhCCC
Q 015151          115 LVKKCPDLLVRRADKTLLPKLEFFASVGI  143 (412)
Q Consensus       115 iv~~~P~lL~~~~~~~L~p~l~fL~~lGl  143 (412)
                      ++.++|.+|..+ ++++.|+++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            456666666666 4456666666666665

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=91.51  E-value=1.2  Score=44.42  Aligned_cols=222  Identities=14%  Similarity=0.161  Sum_probs=118.8

Q ss_pred             HhCCCCHHHHHHHHHhCCcccccCc-------cccHHHHHHHHHh--CCCCchhHHHHhhhCCcccccccccch-hhHHH
Q 015151          103 REHGFSDKHISKLVKKCPDLLVRRA-------DKTLLPKLEFFAS--VGISGTALADVLSSNPAILGRSLKKQI-IPSYK  172 (412)
Q Consensus       103 ~~~G~s~~~i~~iv~~~P~lL~~~~-------~~~L~p~l~fL~~--lGls~~~I~~il~~~P~lL~~sle~~L-~p~v~  172 (412)
                      ..+|+..-.+...+.+||.++....       -=.+-|...-|.+  ..+-.+.-..++.+--.+|-.+.++.| ..++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            4799977889999999999985432       1123333333321  111111113334444456777766543 23566


Q ss_pred             HHH-HhcCChHHHHHHHHHccccccc-c----ccccchHHHHHHcCCChhhhhhhc-------------ccCC----cce
Q 015151          173 FLK-SLLSDDAKIVGALKRAAYLHDV-E----KYISPNISALRDIGVTKSCISSLV-------------ISNP----GVL  229 (412)
Q Consensus       173 fL~-~lg~s~~~i~~~l~~~P~l~s~-e----~~l~~~v~~L~~lGv~~~~i~~ll-------------~~~P----~il  229 (412)
                      .++ ++|++++-...++.+||..+.+ +    ...-.-+.|=.++.++.-+-....             -.+|    .-+
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~  204 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGF  204 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCc
Confidence            666 5999999988999999977111 1    111122222112334332222211             0122    211


Q ss_pred             eecccchHHHHHHHHHc----------CCCCCchh-HHHH---HHHHHhCChHH--HHHHHHHHH-hcCCCHHHHHHHHH
Q 015151          230 CETSNKFDESVKRVIHM----------GFSPSSGV-FVHA---LVAVSTTTDQT--WKQKVAVYS-SWGWSQNEFWLAFK  292 (412)
Q Consensus       230 ~~s~~~~~~~v~~l~~l----------G~~~~~~~-~~~a---~~~l~~~s~~~--l~~kv~~l~-~lG~s~eev~~~i~  292 (412)
                      .. ..+..++++.++++          |+++++.. =.+|   ++-++.++.++  ...++..|+ ++|++ ..+..++.
T Consensus       205 ~l-~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~  282 (335)
T PF11955_consen  205 RL-KKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLL  282 (335)
T ss_pred             cc-cHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHH
Confidence            11 12566777777766          44555432 2223   34445444333  456777887 79998 46888999


Q ss_pred             hCCcccccCHHHHHHHHHHHHHhhCCChHH-Hhhcccc
Q 015151          293 KYPRCMTLSVENINAKMDFYINQMGWQPSA-VARVATV  329 (412)
Q Consensus       293 ~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~-I~~~P~l  329 (412)
                      ++|.|+..|.. -+.-.-||.+  ++...+ |-++|.+
T Consensus       283 rHPgIFYvS~k-g~~~TVfLrE--AY~~~~Liek~Pl~  317 (335)
T PF11955_consen  283 RHPGIFYVSLK-GKRHTVFLRE--AYDGGELIEKHPLV  317 (335)
T ss_pred             hCCCeEEEecc-CCceEEEEee--ccCCCCCCCCCchH
Confidence            99999999865 1222334444  233223 4456655

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=86.97  E-value=2.1  Score=38.43  Aligned_cols=47  Identities=11%  Similarity=0.047  Sum_probs=27.9

Q ss_pred             HHHHHHHHHcCCCCCch-hHHHHHHHHHhCChHHHHHHHHHHHhcCCCHHHHHH
Q 015151          237 DESVKRVIHMGFSPSSG-VFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWL  289 (412)
Q Consensus       237 ~~~v~~l~~lG~~~~~~-~~~~a~~~l~~~s~~~l~~kv~~l~~lG~s~eev~~  289 (412)
                      ...++.++.+|+++++. .....+.   .   ..=..-.+||.++|++++++..
T Consensus       119 ~~w~~l~~~~g~~~~~m~~wh~~fe---~---~~p~~h~~~l~~~g~~~~~~~~  166 (172)
T cd04790         119 EKWVAILKAAGMDEADMRRWHIEFE---K---MEPEAHQEFLQSLGIPEDEIER  166 (172)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHH---H---hCcHHHHHHHHHcCCCHHHHHH
Confidence            45566667777776642 1211111   0   1123456899999999999864

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=86.13  E-value=2.7  Score=37.67  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh----CCCCchhHHHHhhhCCcccccccccchhhHHH
Q 015151           97 LVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFAS----VGISGTALADVLSSNPAILGRSLKKQIIPSYK  172 (412)
Q Consensus        97 ~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~----lGls~~~I~~il~~~P~lL~~sle~~L~p~v~  172 (412)
                      ..+..|+++||+-++|..++.....    +....+..+++.+..    +.-....|..++...+..-....- +...-++
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V-~~~~w~~  123 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLV-TKEKWVA  123 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CHHHHHH
Confidence            4467788999999999998875432    111123333332221    111223344444333322111111 1233445


Q ss_pred             HHHHhcCChHHHHHHHHHccccccccccccchHHHHHHcCCChhhhhhh
Q 015151          173 FLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVTKSCISSL  221 (412)
Q Consensus       173 fL~~lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~lGv~~~~i~~l  221 (412)
                      -++..|+++++..+.=..+-.     ..-..-.+||..+|++.++|..+
T Consensus       124 l~~~~g~~~~~m~~wh~~fe~-----~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         124 ILKAAGMDEADMRRWHIEFEK-----MEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHcCCChHHHHHHHHHHHH-----hCcHHHHHHHHHcCCCHHHHHHH
Confidence            566677777665332222211     11234557888888888877654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	5e-56
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	9e-10
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  184 bits (469), Expect = 5e-56
 Identities = 47/299 (15%), Positives = 90/299 (30%), Gaps = 42/299 (14%)

Query: 95  PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSS 154
               L  L   G     I K  +    LL    +K +   L F   VGI    L   L+ 
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 155 NPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRDIGVT 214
           N AI    L+                                    +   ++ L     +
Sbjct: 65  NHAIFSEDLEN-----------------------------------LKTRVAYLHSKNFS 89

Query: 215 KSCISSLVISNPGVLCETSNKFDESV---KRVIHMGFSPSSGVFVHALVAVSTTTDQTWK 271
           K+ ++ +V   P +L  +  + D  +   ++ + +    +  + V     ++ + +   +
Sbjct: 90  KADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKE 149

Query: 272 QKVAVYSSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLA 331
                    G+  NE      + P+ +T +   +    DF  N M      + +   V  
Sbjct: 150 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209

Query: 332 YSLKRRIIPRCSVIRVL---QLKDLIKENFSLSSVVISSDEYFTDAFVTKYQEQVPQLL 387
             L  ++  R   +  L   Q         SL  +V   DE F +       +   + L
Sbjct: 210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL 267

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 40/217 (18%), Positives = 81/217 (37%), Gaps = 16/217 (7%)

Query: 21  YAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCEN-EKQNKEHSFTITYLIKSCGLPPDV 79
           Y  +S T  + VL  V+   + K   +   +   + EK  K+    + +L K  G+  + 
Sbjct: 2   YVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQM---LLFL-KDVGIEDNQ 57

Query: 80  AASLSKKVNF---ETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLE 136
             +   K +    E  E     ++ L    FS   ++++V+K P LL    ++ L  +L 
Sbjct: 58  LGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLG 116

Query: 137 FFASV-GISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYLH 195
           FF     +S     D++   P +L  SL+        +   L     +I   + R   + 
Sbjct: 117 FFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKML 176

Query: 196 DV-EKYISPNISALRD-IGVTKSCISSLVISNPGVLC 230
              +  ++     + + + +    I    +  P V  
Sbjct: 177 TANKMKLTETFDFVHNVMSIPHHII----VKFPQVFN 209

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  139 bits (352), Expect = 4e-38
 Identities = 49/331 (14%), Positives = 117/331 (35%), Gaps = 24/331 (7%)

Query: 56  EKQNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKL 115
           + +  ++   +  L+ + G+  D+A      V          +   L   G S + I+ +
Sbjct: 13  DSEPLKNEDLLKNLL-TMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASI 71

Query: 116 VKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRS-LKKQIIPSYKFL 174
           + + P  + R  +  L  + + +  +  S   + ++L  +P    RS     +  + KFL
Sbjct: 72  ISRYPRAITRTPEN-LSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFL 130

Query: 175 KSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVT------KSCISSLVISNP 226
            S+      +   L  A     + ++      +  L+  G++         +  ++  NP
Sbjct: 131 YSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPADFVRKIIFKNP 189

Query: 227 GVLCETSNKFDESVKRVIHMGFSPSSGVFV-------HALVAVSTTTDQTWKQKVAVYSS 279
            +L +++ +   +++ +       S  + V         L   +    +++        S
Sbjct: 190 FILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS 249

Query: 280 WGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRII 339
            G ++ E       YP  + L+ +  N K+D  +       S +     VL  S+   + 
Sbjct: 250 LGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLK 307

Query: 340 PRCSVIRVLQLKDLIKENFSLSSVVISSDEY 370
            R   I+ L          +++ +  S   Y
Sbjct: 308 SR---IKELVNAGCNLSTLNITLLSWSKKRY 335

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 76/504 (15%), Positives = 135/504 (26%), Gaps = 180/504 (35%)

Query: 26  TTPLRFVLHNVNRPLVAKPF--------------------------SSIVAVTCENEKQN 59
                F  +NV+R    +P+                          + +    C + K  
Sbjct: 121 NDNQVFAKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 60  KEHSFTITYL-IKSCGLP---------------------PDVAASLSKKVNFETPEKPDL 97
            +  F I +L +K+C  P                      D ++++  +++    E   L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 98  V--------LSILREHGFSD-KHISKLVKKCPDLLVRR----AD---------------- 128
           +        L +L      + K  +     C  LL  R     D                
Sbjct: 238 LKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 129 KTLLPK--LEFFAS-VGISGTAL-ADVLSSNP---AILGRSLK----------------- 164
            TL P          +      L  +VL++NP   +I+  S++                 
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 165 KQII-PSYKFLK-----------SLLSDDAKI-VGALKRAAYLHDVEKYISPNISALRDI 211
             II  S   L+           S+    A I    L       DV K     +      
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKSDVMVV------ 407

Query: 212 GVTKSCISSLV--------ISNPGVLCETSNKFDESV---KRVI-----HMGFSPSSGVF 255
            V K    SLV        IS P +  E   K +      + ++        F     + 
Sbjct: 408 -VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 256 VHALVAVSTTTDQTWKQKVAVYSSWGWSQNEFWLAFKK-YPRCMTLSVENINAKMDFYIN 314
            +         DQ +   +  +        E    F+  +     L    +  K    I 
Sbjct: 467 PYL--------DQYFYSHIG-HHLKNIEHPERMTLFRMVF-----LDFRFLEQK----IR 508

Query: 315 QMGWQPSAVARVATVLA----YSLKRRIIPRCSVIRVLQLKDLIKENFSLSSVVISSDEY 370
                 +A   +   L     Y  K  I         L +  ++     +   +I S   
Sbjct: 509 HDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERL-VNAILDFLPKIEENLICSK-- 563

Query: 371 FTD----AFVTK----YQEQVPQL 386
           +TD    A + +    ++E   Q+
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 54/376 (14%), Positives = 114/376 (30%), Gaps = 131/376 (34%)

Query: 87  VNFETPEKP----DLVLSILREHGFSDKHISKL-VKKCPDLLVRRADKTLLPKLEFFASV 141
           ++FET E      D++        F D  +     K   D+      K++L K E    +
Sbjct: 7   MDFETGEHQYQYKDIL------SVFEDAFVDNFDCKDVQDMP-----KSILSKEEIDHII 55

Query: 142 G----ISGT-ALADVLSSNPA-ILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAY-- 193
                +SGT  L   L S    ++ + +++ +  +YKFL S +  + +   ++    Y  
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIE 114

Query: 194 ----LH-DVEKYISPNIS------ALRD----------------IGVTKSCISSLVISNP 226
               L+ D + +   N+S       LR                 +G  K+ ++  V  + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 227 GVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYSSWGWSQNE 286
            V C               M F     +                                
Sbjct: 175 KVQC--------------KMDF----KI-------------------------------- 184

Query: 287 FWLAFKKY--PRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRII----- 339
           FWL  K    P  +   ++ +  ++D          S + ++      +  RR++     
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPY 243

Query: 340 PRCSVIRVLQLKDL----IKENFSLSS--VVISSDEYFTDAFVTKYQEQVP--------- 384
             C ++    L ++        F+LS   ++ +  +  TD         +          
Sbjct: 244 ENCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 385 --QLLDIFRGKIELSE 398
             ++  +    ++   
Sbjct: 300 PDEVKSLLLKYLDCRP 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 40/279 (14%), Positives = 84/279 (30%), Gaps = 74/279 (26%)

Query: 19  ARYAGNSTTPLRFVLHNVNRPLVAKPFSSIVAVTCENEK---QNKEHSFT--ITYLIKSC 73
            +Y       L   +   N P       SI+A +  +      N +H     +T +I+S 
Sbjct: 308 LKYLDCRPQDLPREVLTTN-PRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 74  --GLPPDVAASLSKKVNFET----PEK---PDLVLSIL---REHGFSDKHISKLVKKCPD 121
              L P        +  F+     P     P ++LS++            ++KL K    
Sbjct: 363 LNVLEPAEY-----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-- 415

Query: 122 LLVRRADKTL--LPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLS 179
           L+ ++  ++   +P +              ++          +L + I+  Y   K+  S
Sbjct: 416 LVEKQPKESTISIPSIYL------------ELKVKLENE--YALHRSIVDHYNIPKTFDS 461

Query: 180 DDAKIVGA-----------LKRAAYLHDVEKYISPNI--------SALRDIGVTKSCISS 220
           DD                 LK   +   +  +    +          +R      +   S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 221 L------VISNPGVLCETSNKFDESVKRVIHMGFSPSSG 253
           +      +      +C+   K++  V  ++   F P   
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIE 556

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.25
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	97.96
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	90.47
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	89.62
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	87.27
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	85.76
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	83.46
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	80.53

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=5.1e-55  Score=433.40  Aligned_cols=309  Identities=15%  Similarity=0.210  Sum_probs=275.4

Q ss_pred             ccCCCCchHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHH
Q 015151           58 QNKEHSFTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEF  137 (412)
Q Consensus        58 ~~~~~~~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~f  137 (412)
                      ++.++..+|+|| ++||++.++|.++++++++.++++++++++||+++|++++||++++.++|.+|.++++ +|.|+++|
T Consensus        15 ~~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~f   92 (343)
T 3mva_O           15 EPLKNEDLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDL   92 (343)
T ss_dssp             -----CCHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHH
T ss_pred             CccccHHHHHHH-HHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHH
Confidence            445667888999 7999999999999999999999999999999999999999999999999999999976 79999999


Q ss_pred             HHhCCCCchhHHHHhhhCCcccccccc-cchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHHHcCCC
Q 015151          138 FASVGISGTALADVLSSNPAILGRSLK-KQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALRDIGVT  214 (412)
Q Consensus       138 L~~lGls~~~I~~il~~~P~lL~~sle-~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~~lGv~  214 (412)
                      |+++|+++++|+++|.++|++|..+.+ ++++|+++||+++|++.+++.+++.++|++  .++++. ++++++|+++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~  171 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLS  171 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCC
Confidence            999999999999999999995555555 489999999999999999999999999999  888765 9999999988774


Q ss_pred             ------hhhhhhhcccCCcceeecccchHHHHHHHH-HcCCCCCchh--HHHHHHHHHhCChHHHHHHHHHHH----hcC
Q 015151          215 ------KSCISSLVISNPGVLCETSNKFDESVKRVI-HMGFSPSSGV--FVHALVAVSTTTDQTWKQKVAVYS----SWG  281 (412)
Q Consensus       215 ------~~~i~~ll~~~P~il~~s~~~~~~~v~~l~-~lG~~~~~~~--~~~a~~~l~~~s~~~l~~kv~~l~----~lG  281 (412)
                            .+.|.+++.++|.+++.+.+++++++++++ ++|+++++..  +..-.+.+...+.+.|++++.++.    ++|
T Consensus       172 ~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG  251 (343)
T 3mva_O          172 LGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG  251 (343)
T ss_dssp             TTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred             cCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence                  789999999999999999889999999999 5999996532  111122345567788999987666    799


Q ss_pred             CCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhHHHHHHHHHcCCccCCcCcc
Q 015151          282 WSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKENFSLS  361 (412)
Q Consensus       282 ~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~~~l~  361 (412)
                      |+++||..|+.++|++|++|+++|++|++||++ ||++.++|+++|++|+||+| ||+|||.   +|.++|+   ++++.
T Consensus       252 ~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~~~~~  323 (343)
T 3mva_O          252 CTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---NLSTL  323 (343)
T ss_dssp             CCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---CSSSS
T ss_pred             CCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---CCCCC
Confidence            999999999999999999999999999999999 99999999999999999999 9999995   6779998   66666


Q ss_pred             --chhccchhHHHHHhcc
Q 015151          362 --SVVISSDEYFTDAFVT  377 (412)
Q Consensus       362 --~~l~~sd~~F~~~~v~  377 (412)
                        +++++||++|.++|.+
T Consensus       324 ~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          324 NITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             CGGGGGSCHHHHHHHHHH
T ss_pred             cchhhcCCHHHHHHHHhc
Confidence              9999999999999864

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=1.6e-48  Score=374.56  Aligned_cols=255  Identities=20%  Similarity=0.301  Sum_probs=237.2

Q ss_pred             hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHH
Q 015151           95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL  174 (412)
Q Consensus        95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL  174 (412)
                      -.+++++|.++|++.++|.+....+|.+|.+++++++.|+++||.++|+++++|++++.++|.+|.+++++ ++|+++||
T Consensus         5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            35889999999999999987777777779999999999999999999999999999999999999999997 99999999


Q ss_pred             HHhcCChHHHHHHHHHcccc--ccccccccchHHHH-HHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCC
Q 015151          175 KSLLSDDAKIVGALKRAAYL--HDVEKYISPNISAL-RDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPS  251 (412)
Q Consensus       175 ~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L-~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~  251 (412)
                      +++|++++++.+++.++|++  .++++ +++++++| +++|++.+++.+++.++|++++.+.+                 
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-----------------  145 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-----------------  145 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-----------------
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-----------------
Confidence            99999999999999999999  88875 99999999 47999999999999999999998754                 


Q ss_pred             chhHHHHHHHHHhCChHHHHHHHHHH-HhcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhccccc
Q 015151          252 SGVFVHALVAVSTTTDQTWKQKVAVY-SSWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVL  330 (412)
Q Consensus       252 ~~~~~~a~~~l~~~s~~~l~~kv~~l-~~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL  330 (412)
                                       +++++++++ +++||+.+||.+|+.++|+++++|+++|++|++||+++||++.++|+++|.+|
T Consensus       146 -----------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l  208 (270)
T 3m66_A          146 -----------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVF  208 (270)
T ss_dssp             -----------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGG
T ss_pred             -----------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHh
Confidence                             467788876 48999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceehhHHHHHHHHHcCCccCC---cCccchhccchhHHHHHhcccCCCChhHH
Q 015151          331 AYSLKRRIIPRCSVIRVLQLKDLIKEN---FSLSSVVISSDEYFTDAFVTKYQEQVPQL  386 (412)
Q Consensus       331 ~~Sle~ri~pR~~~l~~L~~kGl~~~~---~~l~~~l~~sd~~F~~~~v~~~~e~~p~l  386 (412)
                      +||+| ||+|||.++++|.++|+.+++   +++.+++.+||++|+++|++.+.|+....
T Consensus       209 ~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f  266 (270)
T 3m66_A          209 NTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKF  266 (270)
T ss_dssp             GSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHH
T ss_pred             hCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHH
Confidence            99999 999999999999999998765   67778999999999999999998775444

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=8e-36  Score=292.51  Aligned_cols=220  Identities=14%  Similarity=0.177  Sum_probs=164.5

Q ss_pred             HHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHHHHhcCChHHHHHHHHHcccc--ccccccccchHHHHH
Q 015151          132 LPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFLKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALR  209 (412)
Q Consensus       132 ~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~  209 (412)
                      ...+.+|.++|+++++|+++++.+|.++..    ++.+.+.||..+|++.++|.++|.++|++  .+++ +++++++||+
T Consensus        47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~  121 (335)
T 4fp9_B           47 ERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQ  121 (335)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHH
Confidence            334444444444444444444444444432    23444445555555555555555555544  4443 3777777777


Q ss_pred             HcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHH
Q 015151          210 DIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFW  288 (412)
Q Consensus       210 ~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~  288 (412)
                      ++|++..+|.+++.++|++++++.+                                  .+++++.+|. ++|||.+||.
T Consensus       122 ~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS~~ev~  167 (335)
T 4fp9_B          122 KLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFTVQQVT  167 (335)
T ss_dssp             HTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCCHHHHH
T ss_pred             HcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCCHHHHH
Confidence            7788888888888888888877643                                  4567777776 8999999999


Q ss_pred             HHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhcccccccCCCCceehhHHHHHHHHHcCCc----------cCCc
Q 015151          289 LAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAVARVATVLAYSLKRRIIPRCSVIRVLQLKDLI----------KENF  358 (412)
Q Consensus       289 ~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~----------~~~~  358 (412)
                      .||.++|+||++|.++|++|++||+++||++..+|++ |.+|+||++ ||+|||.+|+.   .|..          .+++
T Consensus       168 ~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~---lG~~q~~~~k~~~~~~np  242 (335)
T 4fp9_B          168 KILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLER---LGRYQTPDKKGQTQIPNP  242 (335)
T ss_dssp             HHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHH---HTSCCCCCSSSCCSSCCC
T ss_pred             HHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHH---cCCccCCCcccccCCCCc
Confidence            9999999999999999999999999999999999998 999999999 99999987664   4543          2467


Q ss_pred             CccchhccchhHHHHHhcccCCCChhHHHHHHHhccc
Q 015151          359 SLSSVVISSDEYFTDAFVTKYQEQVPQLLDIFRGKIE  395 (412)
Q Consensus       359 ~l~~~l~~sd~~F~~~~v~~~~e~~p~l~~~y~~~~~  395 (412)
                      +|.+++..||++|+.++++...|+.....+.+..+..
T Consensus       243 sL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~~e~~  279 (335)
T 4fp9_B          243 LLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEE  279 (335)
T ss_dssp             CHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHHhhhh
Confidence            8999999999999999999999998888888876554

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.9e-35  Score=291.52  Aligned_cols=276  Identities=16%  Similarity=0.225  Sum_probs=234.6

Q ss_pred             CCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhH
Q 015151           91 TPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPS  170 (412)
Q Consensus        91 ~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~  170 (412)
                      +|...++++++|.++|++.++   +++++|.++..+++ +..+.++||+++|++.++|++++.++|.+|.++.+ +|.|+
T Consensus        15 ~~~~~~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~   89 (343)
T 3mva_O           15 EPLKNEDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKR   89 (343)
T ss_dssp             -----CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHH
T ss_pred             CccccHHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHH
Confidence            346688999999999999665   57789999999987 68999999999999999999999999999999965 89999


Q ss_pred             HHHHHHhcCChHHHHHHHHHccc-c-cccc-ccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcC
Q 015151          171 YKFLKSLLSDDAKIVGALKRAAY-L-HDVE-KYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMG  247 (412)
Q Consensus       171 v~fL~~lg~s~~~i~~~l~~~P~-l-~s~e-~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG  247 (412)
                      ++||+++|++++++.+++.++|+ + .+.+ +++.|+++||+++|++.++|.+++.++|++++.+.+++++++++++++|
T Consensus        90 l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lg  169 (343)
T 3mva_O           90 WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAG  169 (343)
T ss_dssp             HHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhC
Confidence            99999999999999999999999 5 5555 4899999999999999999999999999999999999999999999887


Q ss_pred             CCCCc---hhHH----HHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCC-cccccCHHHHHHHHHHHHH---h
Q 015151          248 FSPSS---GVFV----HALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYP-RCMTLSVENINAKMDFYIN---Q  315 (412)
Q Consensus       248 ~~~~~---~~~~----~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P-~iL~~S~~~L~~k~~fL~~---~  315 (412)
                      ++.+.   ..++    ...+.+++.++++++++++||+ ++|++.+++..++.+.| .++.++.+.++++++|+.+   .
T Consensus       170 v~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~  249 (343)
T 3mva_O          170 LSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFS  249 (343)
T ss_dssp             HHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHT
T ss_pred             CCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHH
Confidence            75221   1122    2223456677999999999999 59999999999999865 7999999999999999987   6


Q ss_pred             hCCChHHH----hhcccccccCCCCceehhHHHHHHHHHcCCccCC-cCccchhccchhHHHHHh
Q 015151          316 MGWQPSAV----ARVATVLAYSLKRRIIPRCSVIRVLQLKDLIKEN-FSLSSVVISSDEYFTDAF  375 (412)
Q Consensus       316 mg~~~~~I----~~~P~lL~~Sle~ri~pR~~~l~~L~~kGl~~~~-~~l~~~l~~sd~~F~~~~  375 (412)
                      +||+.++|    .++|.+|.+|.| +|++++.++   ...|+...+ ...+.+|.+|-++-..|+
T Consensus       250 lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl---~~mg~~~~~i~~~P~~l~~sleri~~R~  310 (343)
T 3mva_O          250 LGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCL---MEENISISQIIENPRVLDSSISTLKSRI  310 (343)
T ss_dssp             TTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHH---HTTTCCHHHHHHSGGGGGSCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHH---HHcCCCHHHHHhCCHHHhcCHHHHHHHH
Confidence            89998876    689999999999 499998754   457885433 346788888877777776

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=9.4e-33  Score=264.72  Aligned_cols=210  Identities=15%  Similarity=0.245  Sum_probs=190.0

Q ss_pred             CchHHHhHHhcCCCHHHHHhhh---ccc-ccCCCCChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHH
Q 015151           63 SFTITYLIKSCGLPPDVAASLS---KKV-NFETPEKPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFF  138 (412)
Q Consensus        63 ~~~v~yL~~s~Gls~~~a~~~~---~~l-~l~~~~~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL  138 (412)
                      +.+|+||. ++|++++++.+.-   +.+ .....+++.++++||+++|+++++|++++.++|.+|.+++++ +.|+++||
T Consensus         6 s~~l~~L~-~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHH-HTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHHH-HcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            47899995 9999999997762   223 444346899999999999999999999999999999999997 99999999


Q ss_pred             HhCCCCchhHHHHhhhCCcccccccccchhhHHHHH-HHhcCChHHHHHHHHHcccc--ccccccccchHHHH-HHcCCC
Q 015151          139 ASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL-KSLLSDDAKIVGALKRAAYL--HDVEKYISPNISAL-RDIGVT  214 (412)
Q Consensus       139 ~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL-~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L-~~lGv~  214 (412)
                      +++|++.++|++++.++|++|+++++ +++|+++|| .++|++++++.+++.++|.+  .+.+ +++++++++ +++|++
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK  161 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999 599999999 57999999999999999999  6665 599999976 579999


Q ss_pred             hhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHh
Q 015151          215 KSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKK  293 (412)
Q Consensus       215 ~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~  293 (412)
                      .++|..++.++|.+++.+.                                  +++++|++||. ++|++.++|.    +
T Consensus       162 ~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~i~----~  203 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHIIV----K  203 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHHHH----H
T ss_pred             HHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHHHH----h
Confidence            9999999999999998874                                  46788999996 7999999876    9


Q ss_pred             CCcccccCHHHHHHHHHHHHH
Q 015151          294 YPRCMTLSVENINAKMDFYIN  314 (412)
Q Consensus       294 ~P~iL~~S~~~L~~k~~fL~~  314 (412)
                      +|++|++|.++|++|+.|+..
T Consensus       204 ~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          204 FPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             CGGGGGSCHHHHHHHHHHHHH
T ss_pred             CchHhhCCHHHHHHHHHHHHH
Confidence            999999998899999999976

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=218.14  Aligned_cols=179  Identities=20%  Similarity=0.271  Sum_probs=165.1

Q ss_pred             ChhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHH
Q 015151           94 KPDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKF  173 (412)
Q Consensus        94 ~~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~f  173 (412)
                      +++.++..|.++||++++|++++.++|.++.    .++.+++.||.++|++.++|+++|.++|++|..+++ +|+|+++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            5788999999999999999999999999974    358899999999999999999999999999999997 79999999


Q ss_pred             HHHhcCChHHHHHHHHHcccc--ccccccccchHHHHH-HcCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCC
Q 015151          174 LKSLLSDDAKIVGALKRAAYL--HDVEKYISPNISALR-DIGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSP  250 (412)
Q Consensus       174 L~~lg~s~~~i~~~l~~~P~l--~s~e~~l~~~v~~L~-~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~  250 (412)
                      |+++|++.+++.+++.++|.+  ++.+ .+..++.+|+ ++|++.++|..|+.++|.+|+++.                 
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-----------------  181 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-----------------  181 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-----------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-----------------
Confidence            999999999999999999999  7776 5999999997 699999999999999999999874                 


Q ss_pred             CchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 015151          251 SSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGW  318 (412)
Q Consensus       251 ~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~  318 (412)
                                       +++++|++||. +||++.++|.    + |++|++|.++|++|..||.. +|.
T Consensus       182 -----------------e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          182 -----------------GQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             -----------------HHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             -----------------HHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                             46888999998 8999999986    3 99999999999999999987 786

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.25  E-value=6.2e-11  Score=100.13  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=144.2

Q ss_pred             chhhHHHHHHHhcCChHHHHHHHHHcccc-ccccccccchHHHHHHcCCChhhhhhhcccCCcceeecccchHHHHHHHH
Q 015151          166 QIIPSYKFLKSLLSDDAKIVGALKRAAYL-HDVEKYISPNISALRDIGVTKSCISSLVISNPGVLCETSNKFDESVKRVI  244 (412)
Q Consensus       166 ~L~p~v~fL~~lg~s~~~i~~~l~~~P~l-~s~e~~l~~~v~~L~~lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~  244 (412)
                      ++...+.-+.-+|++++-++-++++.|.+ .-.--.+..+-.+|+.+|+.+..+.+++.-+|.++++...          
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq----------  101 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ----------  101 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH----------
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh----------
Confidence            44445555566777777777777777777 2221246777778888888888888888788888777543          


Q ss_pred             HcCCCCCchhHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHH
Q 015151          245 HMGFSPSSGVFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGWQPSAV  323 (412)
Q Consensus       245 ~lG~~~~~~~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~~~~~I  323 (412)
                                              .+...+..++ ++=|+..+|.+++..||.++.-....+.-|+.|-.-.||+...+|
T Consensus       102 ------------------------dindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdi  157 (239)
T 4fzv_B          102 ------------------------DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDI  157 (239)
T ss_dssp             ------------------------HHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHH
T ss_pred             ------------------------hHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcch
Confidence                                    3556666777 788999999999999999999999999999999988999999999


Q ss_pred             hhcccccccCCCCceehhHHHHHHHHHc------CCc-cCCcCccchhccchhHHHHHhcccCCCChhHHHHHH
Q 015151          324 ARVATVLAYSLKRRIIPRCSVIRVLQLK------DLI-KENFSLSSVVISSDEYFTDAFVTKYQEQVPQLLDIF  390 (412)
Q Consensus       324 ~~~P~lL~~Sle~ri~pR~~~l~~L~~k------Gl~-~~~~~l~~~l~~sd~~F~~~~v~~~~e~~p~l~~~y  390 (412)
                      ++ ..+|.||+. .|+.||-+++.|-+-      |-. .+++-+.+++..|+.+|+.+-.....|+..-+-++.
T Consensus       158 vk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsveefqvfkkll  229 (239)
T 4fzv_B          158 VK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLL  229 (239)
T ss_dssp             HH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHHH
Confidence            98 589999998 799999987755321      221 135668999999999999999888766654444433

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=97.96  E-value=5.6e-05  Score=63.88  Aligned_cols=148  Identities=18%  Similarity=0.249  Sum_probs=95.9

Q ss_pred             hhHHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhhCCcccccccccchhhHHHHH
Q 015151           95 PDLVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSSNPAILGRSLKKQIIPSYKFL  174 (412)
Q Consensus        95 ~~~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~~P~lL~~sle~~L~p~v~fL  174 (412)
                      +-..+.-|--+|++++-+.-++++.|++|....- .+..+-.||+.+|+....+.+++.++|.|+++.            
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmr------------   99 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMR------------   99 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSC------------
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHH------------
Confidence            3344444445666666666666666666655544 455556666666666666666666666665553            


Q ss_pred             HHhcCChHHHHHHHHHccccccccccccchHHHHHH-cCCChhhhhhhcccCCcceeecccchHHHHHHHHHcCCCCCch
Q 015151          175 KSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRD-IGVTKSCISSLVISNPGVLCETSNKFDESVKRVIHMGFSPSSG  253 (412)
Q Consensus       175 ~~lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~-lGv~~~~i~~ll~~~P~il~~s~~~~~~~v~~l~~lG~~~~~~  253 (412)
                                             +..+...+..|++ +-++..++.+++..+|.++......+                 
T Consensus       100 -----------------------qqdindtvrllkekclftvqqvtkilhscpsvlredlgql-----------------  139 (239)
T 4fzv_B          100 -----------------------QQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQL-----------------  139 (239)
T ss_dssp             -----------------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHH-----------------
T ss_pred             -----------------------HhhHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhh-----------------
Confidence                                   2346777778875 78888899999999998887664433                 


Q ss_pred             hHHHHHHHHHhCChHHHHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 015151          254 VFVHALVAVSTTTDQTWKQKVAVYS-SWGWSQNEFWLAFKKYPRCMTLSVENINAKMDFYINQMGW  318 (412)
Q Consensus       254 ~~~~a~~~l~~~s~~~l~~kv~~l~-~lG~s~eev~~~i~~~P~iL~~S~~~L~~k~~fL~~~mg~  318 (412)
                                       +-|+.+-- ++|+..-||.     -...+.+|..+|+.+--||.. +|.
T Consensus       140 -----------------eykfqyayfrmgikhpdiv-----kseylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          140 -----------------EYKFQYAYFRMGIKHPDIV-----KSEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             -----------------HHHHHHHHHTSCCCHHHHH-----HTTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             -----------------hhhHhHHHHHccCCCcchh-----HHHHHHHHHHHHHHHHhHHHH-hcc
Confidence                             33444333 6777766654     135678898899999888876 664

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=90.47  E-value=1.2  Score=36.19  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=46.2

Q ss_pred             chHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHH------hCCCCHHHHHHHHHhCCcccccCccc--cHHHHH
Q 015151           64 FTITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILR------EHGFSDKHISKLVKKCPDLLVRRADK--TLLPKL  135 (412)
Q Consensus        64 ~~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~------~~G~s~~~i~~iv~~~P~lL~~~~~~--~L~p~l  135 (412)
                      ..|..|+ ++||+...+.++.+..   . ++++..++||.      +.|++..++...+..+..    +..+  .-...+
T Consensus        10 ~~v~~l~-~MGFp~~~~~kAl~~~---g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~----~~~~~~~~~~~v   80 (118)
T 4ae4_A           10 QCVETVV-NMGYSYECVLRAMKAA---G-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQC----SEEKMMEFLQLM   80 (118)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHH---C-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSS----CHHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHH---C-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccC----CccccccCHHHH
Confidence            5677775 8999999888874333   2 26788888875      346666666655543211    1000  001234


Q ss_pred             HHHHhCCCCchhHHHHhhhC
Q 015151          136 EFFASVGISGTALADVLSSN  155 (412)
Q Consensus       136 ~fL~~lGls~~~I~~il~~~  155 (412)
                      .-|.++|++...+.+.+..+
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~  100 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLH  100 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHc
Confidence            45555555555555554433

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=89.62  E-value=0.52  Score=46.16  Aligned_cols=25  Identities=8%  Similarity=0.301  Sum_probs=14.2

Q ss_pred             CChhHHHHHHHhCCCCHHHHHHHHH
Q 015151           93 EKPDLVLSILREHGFSDKHISKLVK  117 (412)
Q Consensus        93 ~~~~~vl~~L~~~G~s~~~i~~iv~  117 (412)
                      +..+..++-|.++||+..++.+.++
T Consensus       166 ~~~~~~i~~l~~MGf~~~~~~~AL~  190 (368)
T 1oqy_A          166 SEYETMLTEIMSMGYERERVVAALR  190 (368)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHH
Confidence            3445555666666666666555554

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=87.27  E-value=1.2  Score=30.90  Aligned_cols=34  Identities=9%  Similarity=0.169  Sum_probs=22.7

Q ss_pred             HhCCcccccCccccHHHHHHHHHhCCCCchhHHHHhhh
Q 015151          117 KKCPDLLVRRADKTLLPKLEFFASVGISGTALADVLSS  154 (412)
Q Consensus       117 ~~~P~lL~~~~~~~L~p~l~fL~~lGls~~~I~~il~~  154 (412)
                      ..+|.+-...    +..+++||++.|++.++|...+.+
T Consensus        20 L~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           20 LQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3566664433    556778888888888887776654

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=85.76  E-value=0.59  Score=45.81  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             hHHHhHHhcCCCHHHHHhhhcccccCCCCChhHHHHHHH
Q 015151           65 TITYLIKSCGLPPDVAASLSKKVNFETPEKPDLVLSILR  103 (412)
Q Consensus        65 ~v~yL~~s~Gls~~~a~~~~~~l~l~~~~~~~~vl~~L~  103 (412)
                      +|.-|+ ++||+++++.++.+    .+..|++.-++||-
T Consensus       171 ~i~~l~-~MGf~~~~~~~AL~----a~~nn~~~A~e~L~  204 (368)
T 1oqy_A          171 MLTEIM-SMGYERERVVAALR----ASYNNPHRAVEYLL  204 (368)
T ss_dssp             HHHHHH-TTTCCSHHHHHHHH----HSCSSTTHHHHTTT
T ss_pred             HHHHHH-HcCCCHHHHHHHHH----HcCCCHHHHHHHHH
Confidence            678885 89999999988733    22346777777774

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=83.46  E-value=9.4  Score=30.89  Aligned_cols=98  Identities=10%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHhCCcccccCccccHHHHHHHHH------hCCCCchhHHHHhhhCCcccccccccchhhH
Q 015151           97 LVLSILREHGFSDKHISKLVKKCPDLLVRRADKTLLPKLEFFA------SVGISGTALADVLSSNPAILGRSLKKQIIPS  170 (412)
Q Consensus        97 ~vl~~L~~~G~s~~~i~~iv~~~P~lL~~~~~~~L~p~l~fL~------~lGls~~~I~~il~~~P~lL~~sle~~L~p~  170 (412)
                      ..++-|.++||+...+.+.+.+.-        ++....++||.      +.|++..++...+..+..--....  .-...
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~--~~~~~   79 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM--EFLQL   79 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHH--HHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccc--cCHHH
Confidence            457888899999999988876531        24566677765      567888777777654321100000  11235


Q ss_pred             HHHHHHhcCChHHHHHHHHHccccccccccccchHHHHHH
Q 015151          171 YKFLKSLLSDDAKIVGALKRAAYLHDVEKYISPNISALRD  210 (412)
Q Consensus       171 v~fL~~lg~s~~~i~~~l~~~P~l~s~e~~l~~~v~~L~~  210 (412)
                      +.-|.++|++.+.+.++|..+..      ++.+-++||..
T Consensus        80 v~~L~eMGF~~~~a~~AL~~~~n------d~erAlewL~~  113 (118)
T 4ae4_A           80 MSKFKEMGFELKDIKEVLLLHNN------DQDNALEDLMA  113 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHTTT------CHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCC------CHHHHHHHHHH
Confidence            77888899999999888887753      47777788764

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=80.53  E-value=0.86  Score=47.74  Aligned_cols=16  Identities=31%  Similarity=0.644  Sum_probs=11.9

Q ss_pred             hHHhcCCCHHHHHhhh
Q 015151           69 LIKSCGLPPDVAASLS   84 (412)
Q Consensus        69 L~~s~Gls~~~a~~~~   84 (412)
                      |...+|||++++.+|+
T Consensus       351 L~~~~gls~~qvVaIA  366 (1047)
T 3ugm_A          351 LCQAHGLTPDQVVAIA  366 (1047)
T ss_dssp             HHTTSCCCHHHHHHHH
T ss_pred             hhhhccCCHHHhhhhh
Confidence            3446888888888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	80.22

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.22  E-value=0.57  Score=29.11  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhC
Q 015151          269 TWKQKVAVYSSWGWSQNEFWLAFKKY  294 (412)
Q Consensus       269 ~l~~kv~~l~~lG~s~eev~~~i~~~  294 (412)
                      ..+.+|+-|.++||+++++.++++++
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~   28 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRAS   28 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            35678888889999999988888765