Citrus Sinensis ID: 015154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEccEEEEccccccccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccccHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEccccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
MATLFLSSsfllplsshklwqwhpprkhlsfticcasssssnksssssssssrssrkvksnEELYNDLREFLSTvglseshvpsmkelsahgrddLANIVRRRGYKFIRQLLKsstkpgfngfvaekslagqdekvanEVEDVSLSVEVssvrdcfpkslsdpsfvgevspnlnghyekaDMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFatvnhplsedhlgtgvegadfdssEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVagsfngwhhrikmdplpsssiiepirsrkSRLWSTVLWLYPGTYEIKFIVdgqwkvdpqresvtkggicnnilrvi
Flexible Loop (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMkelsahgrddlaNIVRRRGYKFIRQLlksstkpgfnGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPkslsdpsfvgevSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALsvlqtkavteinkaeklisdkdeELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHrikmdplpsssiiepirsrksrlwSTVLWLYPGTYEIKFIVDGQWKVDpqresvtkggicnnilrvi
Low Complexity Region (SEG)
MATlflsssfllplssHKLWQWHPPRKHLSFTICCAsssssnksssssssssrssrkvksnEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANevedvslsvevssvRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDplpsssiiepirsrksrLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered region (IsUnstruct)
***LFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCA**********************************************************DLANIVRRRGYKFIRQLLKSSTKPGFNGFVA**********************************************************EKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLS**HLGTGV*********VEVIARR*ENQLEIDHLKFMLH*****************LALSVLQTKAVTEINKAEKLI******LIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILR**
Disordered Region (DISOPRED)
*******SSFLLPLSSHKLWQWHPPRKHLSFTICCAS**************************LYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFI******************************************************************************************************************************************************************************************************************GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSS***PIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISEMBL)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTIC***************************EELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Disordered Region (DISPRO)
**TLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCAS**********************SNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKS************************************************YEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMD*LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLFLSSSFLLPLSSHKLWQWHPPRKHLSFTICCASSSSSNKSSSSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGYKFIRQLLKSSTKPGFNGFVAEKSLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDRAMILNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVTExxxxxxxxxxxxxxxxxxxxxLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q9R078	270	5'-AMP-activated protein	yes	no	0.25	0.381	0.296	8e-05
P80386	270	5'-AMP-activated protein	yes	no	0.25	0.381	0.304	0.0001
P78789	298	Uncharacterized protein C	yes	no	0.126	0.174	0.363	0.0002
O43741	272	5'-AMP-activated protein	yes	no	0.179	0.272	0.340	0.0005
Q9QZH4	271	5'-AMP-activated protein	no	no	0.179	0.273	0.340	0.0006
Q6PAM0	271	5'-AMP-activated protein	no	no	0.179	0.273	0.340	0.0006
Q5R801	270	5'-AMP-activated protein	yes	no	0.177	0.270	0.340	0.0006
P80387	122	5'-AMP-activated protein	no	no	0.177	0.598	0.340	0.0006
Q9Y478	270	5'-AMP-activated protein	no	no	0.177	0.270	0.340	0.0006
Q5BIS9	270	5'-AMP-activated protein	no	no	0.177	0.270	0.329	0.0006

>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)

Query: 295 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 347
           +I  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHSEEIKAPEKEEFLAWQHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 348 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 406
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 407 NILRV 411
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).
Mus musculus (taxid: 10090)

>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 22/125 (17%)

Query: 295 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 347
           +I   E++ + + EE +A +  L   E    Q       ++G G+ V ++GSFN W    
Sbjct: 45  DIFHTEEMKAPEKEEFLAWQHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL- 103

Query: 348 KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT-KGGICN 406
              PL          +R    +  +L L  G ++ KF VDGQW  DP    VT + G  N
Sbjct: 104 ---PL----------TRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVN 150

Query: 407 NILRV 411
           NI++V
Sbjct: 151 NIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 14/66 (21%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
           I++ G GE+V V GSF+ W  +I++               KS  ++ +L L PGT   KF
Sbjct: 103 IRWRGGGEVVYVTGSFSRWKKKIQL--------------LKSEDYTVLLQLRPGTQRFKF 148

Query: 385 IVDGQW 390
           +VDG W
Sbjct: 149 LVDGIW 154

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 81  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 127

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NN++ V
Sbjct: 128 FVDGQWVHDPSEPVVTSQLGTINNLIHV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Rattus norvegicus (taxid: 10116)

>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
           I++S  G+ V ++GSFN W  +I +           I+S     +  +L L  G ++ KF
Sbjct: 80  IRWSEGGKEVFISGSFNNWSTKIPL-----------IKSHND--FVAILDLPEGEHQYKF 126

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NN++ V
Sbjct: 127 FVDGQWVHDPSEPVVTSQLGTINNLIHV 154

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Mus musculus (taxid: 10090)

>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Pongo abelii (taxid: 9601)

>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 15/88 (17%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
            +++G G+ V ++GSFN W            S +   RS  + +   +L L  G ++ KF
Sbjct: 47  FRWTGGGKEVYLSGSFNNW------------SKLPLTRSHNNFV--AILDLPEGEHQYKF 92

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
           +VDGQW  DP    VT + G  NNI++V
Sbjct: 93  LVDGQWTHDPSEPVVTSQLGTVNNIIQV 120

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Sus scrofa (taxid: 9823)

>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NNI++V
Sbjct: 128 FVDGQWTHDPSEPIVTSQLGTVNNIIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Homo sapiens (taxid: 9606)

>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 325 IQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKF 384
            +++G G+ V ++GSFN W       PL          +R    +  +L L  G ++ KF
Sbjct: 82  FRWTGGGKEVYLSGSFNNWSKL----PL----------TRSHNNFVAILDLPEGEHQYKF 127

Query: 385 IVDGQWKVDPQRESVT-KGGICNNILRV 411
            VDGQW  DP    VT + G  NN+++V
Sbjct: 128 FVDGQWTHDPSEPVVTSQLGTVNNVIQV 155

Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
297739960	471	unnamed protein product [Vitis vinifera]	0.883	0.772	0.536	1e-111
255556890	612	hypothetical protein RCOM_1354150 [Ricin	0.696	0.468	0.511	7e-78
224068793	626	predicted protein [Populus trichocarpa]	0.667	0.439	0.506	2e-76
356545991	622	PREDICTED: uncharacterized protein LOC10	0.672	0.445	0.541	8e-74
449451223	649	PREDICTED: uncharacterized protein LOC10	0.679	0.431	0.478	9e-69
186519755	598	5'-AMP-activated protein kinase-like pro	0.536	0.369	0.517	3e-58
297806299	636	hypothetical protein ARALYDRAFT_487117 [	0.536	0.347	0.496	3e-58
7378624	583	putative protein [Arabidopsis thaliana]	0.398	0.281	0.454	6e-30
168029298	548	predicted protein [Physcomitrella patens	0.393	0.295	0.395	2e-24
297790768	334	hypothetical protein ARALYDRAFT_359028 [	0.172	0.212	0.708	3e-16

>gi|297739960|emb|CBI30142.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/425 (53%), Positives = 274/425 (64%), Gaps = 61/425 (14%)

Query: 46  SSSSSSSRSSRKVKSNEELYNDLREFLSTVGLSESHVPSMKELSAHGRDDLANIVRRRGY 105
           +SS    R+ RKVKS++EL ND+REF+S VGL E H+PSMKELS HGR DLANIVRRRGY
Sbjct: 47  ASSIKKPRARRKVKSDQELCNDIREFVSAVGLPEGHLPSMKELSQHGRTDLANIVRRRGY 106

Query: 106 KFIRQLLKSSTKPGFNGFVAEKSL--------------AGQDEKVANEVEDVSLSVEVSS 151
           K I+ LL S+TK   N F   +SL               GQDEK  + VEDV LS + S 
Sbjct: 107 KHIKDLLSSATKTDTNEFDVGESLTENQDATSDYEDESTGQDEKAKDLVEDVPLSSKGSI 166

Query: 152 VRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLDIIEDR---------- 201
           +      +  DPSF  +    +      +  +EKVA FIQNG+LD IED           
Sbjct: 167 MESGVTNANIDPSFNNDEQSCIRESSTHSSFQEKVAKFIQNGELDTIEDNDYGILSGAAA 226

Query: 202 ----------------------------------AMILNGSALTSKQIASFATVNHPLSE 227
                                             A ILNGS L S QI    T N PL +
Sbjct: 227 EEGKGVIDSENTIELESRPLAELHVEHASSGSNAAKILNGSTLFSDQIVPPVTRNDPLGD 286

Query: 228 DHLGT-GVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALS 286
           D   + G+  ADFD+  +E      ENQ+E++HLK MLHQKE+ELS+LK+QIEKEKLAL+
Sbjct: 287 DRFSSEGLISADFDNLGIET--NEGENQVEVNHLKLMLHQKELELSQLKKQIEKEKLALT 344

Query: 287 VLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHR 346
           +LQTKA TEI+KA+K++ +KD EL AAEESLSGL+ V+IQYSGDGEIVEVAGSFNGWHHR
Sbjct: 345 ILQTKAETEISKAQKIVLEKDAELNAAEESLSGLKEVQIQYSGDGEIVEVAGSFNGWHHR 404

Query: 347 IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICN 406
           IKMDP PSSS  EP+ SRKSRLWSTVLWLYPG YEIKF++DGQW++DPQ E+VT+G I N
Sbjct: 405 IKMDPQPSSSSKEPVGSRKSRLWSTVLWLYPGLYEIKFVIDGQWRIDPQSETVTRGTIDN 464

Query: 407 NILRV 411
           NILRV
Sbjct: 465 NILRV 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556890|ref|XP_002519478.1| hypothetical protein RCOM_1354150 [Ricinus communis] gi|223541341|gb|EEF42892.1| hypothetical protein RCOM_1354150 [Ricinus communis]

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 176/344 (51%), Positives = 214/344 (62%), Gaps = 57/344 (16%)

Query: 121 NGFVAEKSL---AGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFV-GEVSPNLNGH 176
           N  + EK+L     QDEKV +  E +SL  EVS++   +P +  D S V G    N N  
Sbjct: 273 NASLEEKALNIAIDQDEKVNSMAEVISLRSEVSNLE--YPAN--DGSMVLGLNYSNRNSM 328

Query: 177 ----YEKADMEEKVANFIQNGDLDIIEDRA------------------------------ 202
                  + +E+KVA FIQ+GDLD IED                                
Sbjct: 329 PVDPAANSLLEDKVAKFIQSGDLDAIEDNVYAILDETAEESKGSSEPENETEIQSETPTS 388

Query: 203 -------------MILNGSALTSKQIASFATVNHPLSEDHL-GTGVEGADFDSSEVEVIA 248
                        + LNGS   SK ++     NHP+  D L   G+   + D  +++V  
Sbjct: 389 ENDKHADNGSNAPLALNGSISISKDVSPPMRANHPVRNDELPAEGLASFNVDK-DLDVEI 447

Query: 249 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDE 308
            +REN +EI+HLKFMLHQKE+ELS LKEQIEKEK+ALS LQ KA  EI KA+KLIS+KD 
Sbjct: 448 SKRENHVEINHLKFMLHQKELELSHLKEQIEKEKIALSDLQNKAEMEIKKAQKLISEKDA 507

Query: 309 ELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRL 368
           EL+AAEESLSGL  V+IQY+GDGEIVEVAGSFNGWHHRIKMDP PSSS+ +P  SRKS+L
Sbjct: 508 ELLAAEESLSGLMEVKIQYNGDGEIVEVAGSFNGWHHRIKMDPQPSSSVRDPAASRKSKL 567

Query: 369 WSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRVI 412
           WS +LWLYPG YEIKFIVDG W +DPQ E VT+GGICNN+LRVI
Sbjct: 568 WSIMLWLYPGVYEIKFIVDGHWTIDPQGEMVTRGGICNNVLRVI 611

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068793|ref|XP_002326201.1| predicted protein [Populus trichocarpa] gi|222833394|gb|EEE71871.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/324 (50%), Positives = 206/324 (63%), Gaps = 49/324 (15%)

Query: 132 QDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQ 191
           QDEKV    E++SLS  VS  +  +  ++ + S  G +  N +     + + EKVA FIQ
Sbjct: 306 QDEKVGIGAEEMSLSSGVSDTQ--YYANVKNIS--GLIDNNNSCMPANSSLVEKVAKFIQ 361

Query: 192 NGDLDIIEDR--------------------------------------------AMILNG 207
           NGDLD IED                                             A  LN 
Sbjct: 362 NGDLDTIEDNVYGLSNGSGSGESKGFREPENMTEDHSKISSEENFENAVGESDTASTLNE 421

Query: 208 SALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQK 267
           +  TS Q+    TV+  L  +    G+ GAD D  ++++   +++NQ+EI+HLKF+LHQK
Sbjct: 422 NLSTSMQVVPSVTVSRALRNESPAEGLAGADVDQ-DLDIETNKKDNQIEINHLKFILHQK 480

Query: 268 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 327
           E+ELS+LKEQIEKEKLALS LQTKA  EI+KA+KLIS+KD EL+ AEESLSGL  VE+ Y
Sbjct: 481 ELELSQLKEQIEKEKLALSALQTKAEREISKAQKLISEKDAELLVAEESLSGLVEVEVAY 540

Query: 328 SGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 387
            G+GE+VEVAGSFNGWHH +++DP PSSSI +   SRKSRLWS +LWLYPG YEIKFIVD
Sbjct: 541 CGNGEMVEVAGSFNGWHHPVRLDPQPSSSIKDHFGSRKSRLWSAMLWLYPGVYEIKFIVD 600

Query: 388 GQWKVDPQRESVTKGGICNNILRV 411
           G W+VDPQ ESVTKGGICNN+LRV
Sbjct: 601 GHWRVDPQMESVTKGGICNNVLRV 624

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545991|ref|XP_003541416.1| PREDICTED: uncharacterized protein LOC100805984 [Glycine max]

 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 22/299 (7%)

Query: 128 SLAGQDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEV-------SPNLNGHYEKA 180
           +L G D+   +  EDV+ + EVS VR    ++LSD + +  +       S NL+      
Sbjct: 329 ALEGLDDSKDDIAEDVATTSEVS-VR----ENLSDDNRLNSIVHSADSSSTNLDT-LANL 382

Query: 181 DMEEKVANFIQNGDLDIIE------DRAMILNGSALTSKQIASFATVN--HPLSEDHLGT 232
            + EKVANFIQNGDLD +E      D  ++ +G++LTS Q+     ++    L +DHL  
Sbjct: 383 SLREKVANFIQNGDLDPVEGTHLPEDNNVMAHGNSLTSNQVVPSGALDLDQSLWDDHLPH 442

Query: 233 GVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKA 292
                DF+  +++  A + +N+ EI+HLKFML+QKE+ELSRLKEQIEKEKLALSVLQTKA
Sbjct: 443 EDLTTDFNK-DLDTEAPKVQNESEINHLKFMLYQKELELSRLKEQIEKEKLALSVLQTKA 501

Query: 293 VTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPL 352
             EI+KA KLIS+KD EL  AEESLSGL+ V+I++ GDG++VEVAGSFNGWHHRI+MD  
Sbjct: 502 EAEISKARKLISEKDAELHVAEESLSGLKEVQIEFCGDGDVVEVAGSFNGWHHRIEMDLQ 561

Query: 353 PSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 411
            S+S I+   SR SR WST+LWLYPG YEIKF+VDG+W  DPQRESVT+G ICNNILRV
Sbjct: 562 QSTSAIDLDGSRSSRCWSTMLWLYPGVYEIKFVVDGKWITDPQRESVTRGHICNNILRV 620

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451223|ref|XP_004143361.1| PREDICTED: uncharacterized protein LOC101203013 [Cucumis sativus] gi|449482584|ref|XP_004156334.1| PREDICTED: uncharacterized protein LOC101225132 [Cucumis sativus]

 Score =  267 bits (682), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 155/324 (47%), Positives = 199/324 (61%), Gaps = 44/324 (13%)

Query: 132 QDEKVANEVEDVSLSVEVSSVRDCFPKSLSDPSFVGEVSPN-LNGHYEKADMEEKVANFI 190
           Q EK  N V+ VSLS E++ + D       D +   E S + L  + E+  + EKVA FI
Sbjct: 324 QVEKEDNCVDGVSLSAEMTIIDDRSSGLNIDRALAHEDSSDKLVKYSEELSLAEKVARFI 383

Query: 191 QNGDLDIIEDRAMILNGSALTSKQIASFATVN----------HPLSEDH-------LGTG 233
           QNGDLDI++D        +   K   S A  N             SED        + + 
Sbjct: 384 QNGDLDIVDDNFDATLSESGAGKGNGSVAATNAEESEINFHVEAFSEDTTASRGSLMASN 443

Query: 234 VEGADFD----------------------SSEVEVIA----RRRENQLEIDHLKFMLHQK 267
              ++FD                      + ++E ++    +  ENQ+EID LKFMLHQK
Sbjct: 444 GSASEFDDKVSTTTVGQLIRDNQPSTEALNGQIEKVSGAEIKVSENQVEIDRLKFMLHQK 503

Query: 268 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQY 327
           E+ELS+LKEQIE++KLALS  Q+KA  EI+ A+KLI ++D EL+AAEE L GLE V+I Y
Sbjct: 504 ELELSQLKEQIERDKLALSASQSKAEAEISLAQKLILERDSELVAAEECLYGLEEVQIHY 563

Query: 328 SGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD 387
           SG+GEIVEVAGSFNGWHH+IKMDP PSS+ ++ + S+K R WSTVLWLYPG YEIKF+VD
Sbjct: 564 SGEGEIVEVAGSFNGWHHKIKMDPQPSSNHLDSVNSKKHRHWSTVLWLYPGVYEIKFVVD 623

Query: 388 GQWKVDPQRESVTKGGICNNILRV 411
           G WK+DP RES+TKG I NNILRV
Sbjct: 624 GHWKIDPHRESLTKGAISNNILRV 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186519755|ref|NP_195962.2| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gi|332003218|gb|AED90601.1| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/263 (51%), Positives = 158/263 (60%), Gaps = 42/263 (15%)

Query: 182 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 208
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 209 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKE 268
           AL  K+I     VN          G  G D D        R+RENQ+EID L+FML QKE
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHE---TRKRENQVEIDRLRFMLDQKE 458

Query: 269 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 328
           +ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y 
Sbjct: 459 LELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYC 518

Query: 329 GDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG 388
           GDG  VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFIVDG
Sbjct: 519 GDGNAVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFIVDG 572

Query: 389 QWKVDPQRESVTKGGICNNILRV 411
           QW  DPQ++SVT+G I NNIL+V
Sbjct: 573 QWITDPQKDSVTRGHISNNILKV 595

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806299|ref|XP_002871033.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata] gi|297316870|gb|EFH47292.1| hypothetical protein ARALYDRAFT_487117 [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/266 (49%), Positives = 161/266 (60%), Gaps = 45/266 (16%)

Query: 182 MEEKVANFIQNGDLDIIEDR------------------------------------AMIL 205
           +EEK   FIQNG LD ++D                                     +M  
Sbjct: 378 IEEKTTRFIQNGYLDTVDDDENGIPNESCPEDTKEGVETTKGGAYIGDSYGGQRSISMPP 437

Query: 206 NGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLH 265
           NGSAL  +++     +N          G    D DS +  +   +RENQ+EID L+FMLH
Sbjct: 438 NGSALALEEVTHAKELNSSDRNSDQRDGSADLDTDSHDETM---KRENQVEIDRLRFMLH 494

Query: 266 QKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEI 325
           QKE+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V I
Sbjct: 495 QKELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELRDAEESLSGLQEVVI 554

Query: 326 QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFI 385
           +Y GDG +VEV GSFNGW HR+ M+   S SI       K + WST+LWLYPGTYEIKFI
Sbjct: 555 EYCGDGNVVEVTGSFNGWQHRVGMELQASKSI------GKQKCWSTLLWLYPGTYEIKFI 608

Query: 386 VDGQWKVDPQRESVTKGGICNNILRV 411
           VDGQW  DPQ++SVT+G I NNIL V
Sbjct: 609 VDGQWITDPQKDSVTRGHITNNILIV 634

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7378624|emb|CAB83300.1| putative protein [Arabidopsis thaliana]

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 109/209 (52%), Gaps = 45/209 (21%)

Query: 182 MEEKVANFIQNGDLDII-EDRAMI--------------------------------LNGS 208
           +EEK   FIQNG LD +  D   I                                LNGS
Sbjct: 342 IEEKTTRFIQNGYLDTVGADENDIPNESCPEESSETTKGGEYIGDSLGGPRIMSTPLNGS 401

Query: 209 ALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKE 268
           AL  K+I     VN          G  G D D        R+RENQ+EID L+FML QKE
Sbjct: 402 ALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHE---TRKRENQVEIDRLRFMLDQKE 458

Query: 269 MELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYS 328
           +ELSRLKEQIEKEK         A TEI KA+ LIS+K+ EL  AEESLSGL+ V I+Y 
Sbjct: 459 LELSRLKEQIEKEK---------AETEIQKAQMLISEKEVELQEAEESLSGLQEVVIEYC 509

Query: 329 GDGEIVEVAGSFNGWHHRIKMDPLPSSSI 357
           GDG  VEV GSFNGW HR+ M+   S SI
Sbjct: 510 GDGNAVEVTGSFNGWQHRVGMELQASKSI 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168029298|ref|XP_001767163.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681659|gb|EDQ68084.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 5/167 (2%)

Query: 248 ARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD 307
           A R +++ E+  L  +LH +EME  ++  ++E+ K  L++++ K   E+ +A+ +  +KD
Sbjct: 382 AGRTDSEAEVARLLALLHAREMENLKVLRELEETKAMLALVRAKHSAEMAQAKLVAVEKD 441

Query: 308 EELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPS-SSIIEPIR--SR 364
             L  AE++L  L++ ++ + G+G  VE+ GSFNGW H I++  LP  SS   P+R  + 
Sbjct: 442 LRLQVAEQALQSLKLTQVDWWGEGSRVELGGSFNGWEHHIQL--LPDLSSKSSPVRPGTP 499

Query: 365 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 411
              LW   LWLYPG YEIKFIVDG+W +D +RE V      NN+L V
Sbjct: 500 SPLLWRIELWLYPGVYEIKFIVDGKWVLDNRREIVQGHMGQNNLLHV 546

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790768|ref|XP_002863269.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata] gi|297309103|gb|EFH39528.1| hypothetical protein ARALYDRAFT_359028 [Arabidopsis lyrata subsp. lyrata]

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 59/72 (81%)

Query: 250 RRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEE 309
           +RENQ+EI  L+FML QKE ELSRLKEQIEKEKL+LSVLQ +A  EI KA+ L+S KD E
Sbjct: 246 KRENQVEITRLRFMLRQKEQELSRLKEQIEKEKLSLSVLQRQAENEILKAQMLVSVKDVE 305

Query: 310 LIAAEESLSGLE 321
           L  AEESLSGL+
Sbjct: 306 LQEAEESLSGLQ 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2142669	598	AT5G03420 "AT5G03420" [Arabido	0.480	0.331	0.579	9.7e-72
TAIR|locus:2167067	273	AT5G39790 "AT5G39790" [Arabido	0.366	0.553	0.295	1.2e-08
UNIPROTKB|P80387	122	PRKAB1 "5'-AMP-activated prote	0.25	0.844	0.272	0.00031

TAIR|locus:2142669 AT5G03420 "AT5G03420" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
 Identities = 120/207 (57%), Positives = 139/207 (67%)

Query:   205 LNGSALTSKQIASFATVNHPLSEDHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFML 264
             LNGSAL  K+I     VN          G  G D D        R+RENQ+EID L+FML
Sbjct:   398 LNGSALALKEIIHATEVNSSDRNSDQRDGSVGLDTDPHHE---TRKRENQVEIDRLRFML 454

Query:   265 HQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVE 324
              QKE+ELSRLKEQIEKEKL+LSVLQ +A TEI KA+ LIS+K+ EL  AEESLSGL+ V 
Sbjct:   455 DQKELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVV 514

Query:   325 IQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKF 384
             I+Y GDG  VEV GSFNGW HR+ M+                  WST+LWLYPGTYEIKF
Sbjct:   515 IEYCGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQK------CWSTLLWLYPGTYEIKF 568

Query:   385 IVDGQWKVDPQRESVTKGGICNNILRV 411
             IVDGQW  DPQ++SVT+G I NNIL+V
Sbjct:   569 IVDGQWITDPQKDSVTRGHISNNILKV 595

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2167067 AT5G39790 "AT5G39790" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:   249 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ-TKAVTEINKAEKLISDKD 307
             +R+E+  EI ++K  L   E+E+  L +  E E   L + Q ++ ++       L+S  D
Sbjct:   116 KRQEH--EITNIKTELALMELEVQALVKLAE-EIANLGIPQGSRKISGKYIQSHLLSRLD 172

Query:   308 EELIAAEESLSGLEV-----VEIQYSGDGEIVEVAGSFNGWHHRIKMDXXXXXXXXXXXX 362
                   +E + G+E      V + + G  E V+V GSF+GW  R  +             
Sbjct:   173 AVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK--- 229

Query:   363 XXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKGGICNNILRV 411
                   +ST L+L PG YE+KF+VDG+W++ P+  +  +G + NN+L V
Sbjct:   230 ------FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLMENNVLVV 272

GO:0009507 "chloroplast" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

UNIPROTKB|P80387 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 0.00031, P = 0.00031
 Identities = 34/125 (27%), Positives = 57/125 (45%)

Query:   295 EINKAEKLISDKDEELIAAEESLSGLEVVEIQ-------YSGDGEIVEVAGSFNGWHHRI 347
             ++  +E++ + + EE +A +  L   +    Q       ++G G+ V ++GSFN W    
Sbjct:    10 DLYHSEEIKAPEKEEFLAWQHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNWS--- 66

Query:   348 KMDXXXXXXXXXXXXXXXXXLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICN 406
             K+                   +  +L L  G ++ KF+VDGQW  DP    VT   G  N
Sbjct:    67 KLPLTRSHNN-----------FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115

Query:   407 NILRV 411
             NI++V
Sbjct:   116 NIIQV 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      412       343   0.00096  116 3  11 22  0.43    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.80u 0.13s 33.93t   Elapsed:  00:00:01
  Total cpu time:  33.80u 0.13s 33.93t   Elapsed:  00:00:01
  Start:  Fri May 10 07:17:45 2013   End:  Fri May 10 07:17:46 2013

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00280219 hypothetical protein (626 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	4e-23
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	2e-04
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	4e-04
cd02688	82	cd02688, E_set, Early set domain associated with t	9e-04
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	0.002

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 91.9 bits (229), Expect = 4e-23
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 323 VEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 381
           V  ++ G  G+ V V GSF+ W   I ++                  +S  + L PG YE
Sbjct: 2   VTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDGE------------FSATVELPPGRYE 49

Query: 382 IKFIVDGQWKVDPQRESVT-KGGICNNILRV 411
            KFIVDG+W  DP   +VT + G  NN+L V
Sbjct: 50  YKFIVDGEWVHDPDLPTVTDEFGNLNNVLEV 80

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 334 VEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-WK 391
           V + G FN W      DP        P++  K+  +S  L L  G  Y+ ++++DG+ W 
Sbjct: 16  VSLVGDFNDW------DPQA-----TPMKKLKNGTFSATLDLPAGREYQFRYLIDGERWV 64

Query: 392 VDPQ 395
            DP+
Sbjct: 65  NDPE 68

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 41/135 (30%)

Query: 229 HLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 288
           HLG    G DFD   ++ +    + +  ID     L + +M L RLKE  EK K+ LS +
Sbjct: 220 HLG----GDDFDQRIIDWLVEEFKKEEGID-----LRKDKMALQRLKEAAEKAKIELSSV 270

Query: 289 QTKAVTEIN---------------------KAEKLISDKDEELIA-AEESLS--GLEVVE 324
                TEIN                     K E+L  D  E  I   +++L    L   +
Sbjct: 271 TE---TEINLPFITADATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSD 327

Query: 325 IQYSGDGEIVEVAGS 339
           I      E++ V GS
Sbjct: 328 ID-----EVILVGGS 337

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 327 YSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 386
           ++   + V + GSFNGW     +          P+      +WS  + L  GTYE K+++
Sbjct: 7   FAPGAKSVYLIGSFNGWWQAQAL----------PMTKNGGGVWSATIPLPLGTYEYKYVI 56

Query: 387 DGQWKVDP 394
           DG   V P
Sbjct: 57  DGGKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 12/70 (17%)

Query: 228 DHLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSV 287
           +HLG    G DFD+  V+ +    + Q  ID     L Q +M L RL+E  EK K+ LS 
Sbjct: 219 NHLG----GDDFDNCIVDWLVENFQQQEGID-----LSQDKMALQRLREAAEKAKIELSS 269

Query: 288 LQTKAVTEIN 297
           + T   T IN
Sbjct: 270 MLT---TSIN 276

Length = 653

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.9
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.76
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.6
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.23
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.87
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.39
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.32
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.79
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.73
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.49
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.43
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.37
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.25
PRK12313	633	glycogen branching enzyme; Provisional	97.16
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.14
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.12
PRK12568	730	glycogen branching enzyme; Provisional	97.1
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.02
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	96.98
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	96.98
PRK14706	639	glycogen branching enzyme; Provisional	96.83
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.81
PRK14705	1224	glycogen branching enzyme; Provisional	96.81
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.75
PLN02447	758	1,4-alpha-glucan-branching enzyme	96.73
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.7
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.65
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.64
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.61
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	96.61
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.57
PRK05402	726	glycogen branching enzyme; Provisional	96.57
PLN02316	1036	synthase/transferase	96.43
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	95.97
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.95
PRK05402	726	glycogen branching enzyme; Provisional	95.74
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.03
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.17
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	93.88
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	93.68
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.71
PLN02316	1036	synthase/transferase	92.52
PLN02950	909	4-alpha-glucanotransferase	92.32
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	90.17
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	90.1
PLN02950	909	4-alpha-glucanotransferase	89.21
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	87.15
PRK03705	658	glycogen debranching enzyme; Provisional	86.16
PLN02960	897	alpha-amylase	84.74
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	83.64
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	80.92

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.90  E-value=7.5e-24  Score=169.44  Aligned_cols=78  Identities=35%  Similarity=0.699  Sum_probs=71.6

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCcc
Q 015154          320 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  399 (412)
Q Consensus       320 L~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtV  399 (412)
                      .++|+|+|.++|++|+|+|+|+||++.++|.+.            ..+ |++++.||||.|+|||+|||+|.+||+.|++
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~   67 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE   67 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence            368999999999999999999999988999985            334 9999999999999999999999999999999


Q ss_pred             cC-CCccceEEE
Q 015154          400 TK-GGICNNILR  410 (412)
Q Consensus       400 tD-~G~vNNVL~  410 (412)
                      .+ .|+.||+|.
T Consensus        68 ~d~~G~~NN~i~   79 (79)
T cd02859          68 TDDEGNVNNVID   79 (79)
T ss_pred             CCCCCcEeeeEC
Confidence            87 699999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.76  E-value=1.7e-18  Score=138.10  Aligned_cols=77  Identities=39%  Similarity=0.689  Sum_probs=68.1

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeee-cCCCCCc
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES  398 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~-~DPd~Pt  398 (412)
                      ++|+|+|.++ ++.|+|+|+||+|+ .++|.++            .+|.|++++.|+||.|+|||+|||.|. +||.++.
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~   68 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA   68 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence            4799999998 69999999999998 5789874            569999999999999999999999999 9999997


Q ss_pred             ccC--CCccceEEE
Q 015154          399 VTK--GGICNNILR  410 (412)
Q Consensus       399 VtD--~G~vNNVL~  410 (412)
                      ..+  .|+.|+||.
T Consensus        69 ~~~~~~g~~n~v~~   82 (82)
T cd02861          69 YVDDGFGGKNAVFV   82 (82)
T ss_pred             eecCCCCccceEcC
Confidence            664  388899873

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.2e-15  Score=148.88  Aligned_cols=83  Identities=39%  Similarity=0.567  Sum_probs=75.5

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCcc
Q 015154          320 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV  399 (412)
Q Consensus       320 L~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtV  399 (412)
                      -.+|+|+|.++++.|+|+|+|++|...++|.+..          +..|.|++++.|++|.|+|||+|||+|++|++.|++
T Consensus        79 ~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta  148 (289)
T KOG1616|consen   79 GRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTA  148 (289)
T ss_pred             CCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCccc
Confidence            4689999999999999999999999999998742          345559999999999999999999999999999999


Q ss_pred             cC-CCccceEEEeC
Q 015154          400 TK-GGICNNILRVI  412 (412)
Q Consensus       400 tD-~G~vNNVL~V~  412 (412)
                      ++ .|+.||+|.|.
T Consensus       149 ~d~~Gn~~N~i~v~  162 (289)
T KOG1616|consen  149 EDSLGNLNNILEVQ  162 (289)
T ss_pred             ccccCCcccceEec
Confidence            98 69999999984

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.23  E-value=4.5e-11  Score=96.74  Aligned_cols=77  Identities=25%  Similarity=0.371  Sum_probs=64.6

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECCeeecCCCCC
Q 015154          320 LEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDGQWKVDPQRE  397 (412)
Q Consensus       320 L~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL-~LPPG~YEYKFIVDGeW~~DPd~P  397 (412)
                      ...|+|+..++ |++|.|.|+|++|.. .+|+++            ++|.|++++ .|.+|.|.|+|+|||.|+.||..+
T Consensus         5 ~~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~   71 (85)
T cd02858           5 DRTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNP   71 (85)
T ss_pred             CCcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCC
Confidence            35789987776 999999999998864 789885            689999998 488899999999999999999999


Q ss_pred             cccC-CCccceEE
Q 015154          398 SVTK-GGICNNIL  409 (412)
Q Consensus       398 tVtD-~G~vNNVL  409 (412)
                      .... .+..-|++
T Consensus        72 ~~~~~~~~~~~~~   84 (85)
T cd02858          72 TTKPGRQVDTSGV   84 (85)
T ss_pred             ceeecccccceee
Confidence            9884 46555543

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.87  E-value=1e-08  Score=78.14  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=60.5

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eeEEEEEEECCeeecCCCCCc
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES  398 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPP-G~YEYKFIVDGeW~~DPd~Pt  398 (412)
                      ..|+|++.++ ++.|.|.+.|++|...++|.+.            ..|.|.+.+.+.. |.|.|+|.|||.|.+++.++.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~   71 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK   71 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence            4689998876 8999999999997667889874            5699999999887 999999999999999998877


Q ss_pred             ccCC
Q 015154          399 VTKG  402 (412)
Q Consensus       399 VtD~  402 (412)
                      ..+.
T Consensus        72 ~~~~   75 (83)
T cd02688          72 ADEG   75 (83)
T ss_pred             hhcC
Confidence            6654

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.39  E-value=1.1e-06  Score=73.93  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=51.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-eEEEEEEE-CC
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG  388 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~L--------PPG-~YEYKFIV-DG  388 (412)
                      ..++|+..+| |+.|+|.|+||+|+.. ++|.+.            +.|+|++++..        +.| .|.|.+.. ||
T Consensus         5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G   72 (99)
T cd02854           5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG   72 (99)
T ss_pred             CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence            4688987666 9999999999999863 679874            68999999864        456 56666666 78


Q ss_pred             ee--ecCCCCCccc
Q 015154          389 QW--KVDPQRESVT  400 (412)
Q Consensus       389 eW--~~DPd~PtVt  400 (412)
                      +|  +.||-...+.
T Consensus        73 ~~~~~~DPyA~~~~   86 (99)
T cd02854          73 EWIDRIPAWIKYVT   86 (99)
T ss_pred             CEEEEcCcceeEEE
Confidence            76  4677766554

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.32  E-value=6.1e-07  Score=70.67  Aligned_cols=59  Identities=27%  Similarity=0.435  Sum_probs=46.6

Q ss_pred             eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeeEEEEEEECCee
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW  390 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNN-W~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~--LPPG~YEYKFIVDGeW  390 (412)
                      ..++|+..++ |+.|.|.+.|++ |... ++|.+.           ...|+|++++.  +++|.+.|+|.|||..
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            5789986665 999999999999 8653 789831           37899999998  8889888888887653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.79  E-value=8.8e-05  Score=61.05  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-----
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----  389 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~-----~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe-----  389 (412)
                      .++|+..++ |++|.|.. |++|.     ..++|.+.            ..|+|++.+. +.+|.+ |+|.|+|.     
T Consensus         9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~   74 (100)
T cd02860           9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRG------------ENGVWSVTLDGDLEGYY-YLYEVKVYKGETN   74 (100)
T ss_pred             CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecC------------CCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence            478976666 99999988 88886     34678763            6899999986 566754 88888875     


Q ss_pred             eecCCCCCcccCCC
Q 015154          390 WKVDPQRESVTKGG  403 (412)
Q Consensus       390 W~~DPd~PtVtD~G  403 (412)
                      ...||-...+..+|
T Consensus        75 ~~~DPyA~~~~~~~   88 (100)
T cd02860          75 EVVDPYAKALSANG   88 (100)
T ss_pred             EEcCcccEeEeeCC
Confidence            78899888777544

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.73  E-value=0.00017  Score=58.30  Aligned_cols=66  Identities=26%  Similarity=0.536  Sum_probs=48.4

Q ss_pred             EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC-
Q 015154          322 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-  388 (412)
Q Consensus       322 ~VTFtW~g---~AkeV~LaGS---FNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG-  388 (412)
                      +|+|....   .|+.|+|+|+   +.+|++.  ++|...            ..+.|++.+.||+| .++|||++   +| 
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~   69 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT   69 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence            46666543   4899999996   6899863  578753            56789999999987 79999996   24 


Q ss_pred             -eeecCCCCCcc
Q 015154          389 -QWKVDPQRESV  399 (412)
Q Consensus       389 -eW~~DPd~PtV  399 (412)
                       .|...++.-..
T Consensus        70 ~~WE~~~nr~~~   81 (95)
T cd05808          70 VTWESGPNRTAT   81 (95)
T ss_pred             EEEecCCCEEEE
Confidence             47776644333

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.49  E-value=0.00064  Score=55.20  Aligned_cols=77  Identities=26%  Similarity=0.352  Sum_probs=50.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-Cee--ecCC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP  394 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVD-GeW--~~DP  394 (412)
                      .++|+...+ |+.|.|.++|++|.. .++|.++           ...|.|.+.+. +++| .|.|++..+ |.|  ..||
T Consensus        22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP   90 (106)
T cd02855          22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP   90 (106)
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence            478876555 999999999999964 3578764           24899998885 6666 444444444 333  4466


Q ss_pred             CCCcccCCCccceEE
Q 015154          395 QRESVTKGGICNNIL  409 (412)
Q Consensus       395 d~PtVtD~G~vNNVL  409 (412)
                      -..-++.....++|+
T Consensus        91 Ya~~~~~~~~~~~~~  105 (106)
T cd02855          91 YAFYSELRPGTASIV  105 (106)
T ss_pred             CceeeEeCCCCeEEe
Confidence            665555444455543

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.43  E-value=0.0004  Score=56.91  Aligned_cols=58  Identities=22%  Similarity=0.427  Sum_probs=45.2

Q ss_pred             eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154          321 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  386 (412)
Q Consensus       321 ~~VTFtW~g---~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV  386 (412)
                      +.|+|....   .++.|+|+|+..   +|+.  .++|....        .......|++++.||.| .++|||+|
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            467887744   489999999996   8996  46787531        01246799999999998 79999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.0003  Score=76.26  Aligned_cols=67  Identities=25%  Similarity=0.459  Sum_probs=51.6

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-----e
Q 015154          319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W  390 (412)
Q Consensus       319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe-----W  390 (412)
                      |...|+|+..+| ++.|.|.|+||+|... .+|...           ++.|.|.++++ +++| +.|||.|++.     +
T Consensus        34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~  101 (628)
T COG0296          34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL  101 (628)
T ss_pred             CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence            556899986665 9999999999999862 344432           36799999998 9999 9999999754     3


Q ss_pred             ecCCCCC
Q 015154          391 KVDPQRE  397 (412)
Q Consensus       391 ~~DPd~P  397 (412)
                      +.||-.-
T Consensus       102 ~~DP~a~  108 (628)
T COG0296         102 KADPYAR  108 (628)
T ss_pred             ccCchhh
Confidence            6666543

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.25  E-value=0.0016  Score=53.72  Aligned_cols=67  Identities=27%  Similarity=0.447  Sum_probs=49.9

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC--
Q 015154          321 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG--  388 (412)
Q Consensus       321 ~~VTFtW~g---~AkeV~LaGSF---NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG--  388 (412)
                      ..|+|+...   .|+.|+|+|+-   .+|++..+|..             ..+.|.+.+.+|+| .++|||++   ||  
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v   68 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV   68 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence            356666544   38999999988   59997777764             24569999999988 79999999   44  


Q ss_pred             eeecCCCCCccc
Q 015154          389 QWKVDPQRESVT  400 (412)
Q Consensus       389 eW~~DPd~PtVt  400 (412)
                      .|...++.-...
T Consensus        69 ~WE~g~Nr~~~~   80 (92)
T cd05818          69 IWEGGNNRVLEL   80 (92)
T ss_pred             EEEeCCCEEEEc
Confidence            487766654433

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.16  E-value=0.0013  Score=70.50  Aligned_cols=67  Identities=22%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEE-CCee--ecC
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD  393 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIV-DGeW--~~D  393 (412)
                      ..|+|+..+| |+.|+|.|+||+|... .+|.+.            ..|+|++++. +.+| .|.|++.+ ||.|  ..|
T Consensus        38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  105 (633)
T PRK12313         38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID  105 (633)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence            4789987776 9999999999999864 678873            6799999997 4555 67666654 5765  456


Q ss_pred             CCCCcc
Q 015154          394 PQRESV  399 (412)
Q Consensus       394 Pd~PtV  399 (412)
                      |-...+
T Consensus       106 Pya~~~  111 (633)
T PRK12313        106 PFAFYF  111 (633)
T ss_pred             CceEEE
Confidence            655443

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.14  E-value=0.0034  Score=52.74  Aligned_cols=70  Identities=23%  Similarity=0.333  Sum_probs=52.0

Q ss_pred             ceEEEEEEec-----CCceEEEEeeeC---CCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEE
Q 015154          320 LEVVEIQYSG-----DGEIVEVAGSFN---GWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI  385 (412)
Q Consensus       320 L~~VTFtW~g-----~AkeV~LaGSFN---NW~~~I-----pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFI  385 (412)
                      .++|+|....     .|+.|+|+|+-.   +|+...     +|..            .....|.+.+.||.| ..+|||+
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v   69 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL   69 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence            3688998863     389999999874   998632     5543            245689999999999 7999999


Q ss_pred             E---CCe--eecCCCCCcccC
Q 015154          386 V---DGQ--WKVDPQRESVTK  401 (412)
Q Consensus       386 V---DGe--W~~DPd~PtVtD  401 (412)
                      +   ||.  |...++.-....
T Consensus        70 ~~~~~g~v~WE~g~Nr~~~~p   90 (103)
T cd05820          70 KAPADGTGTWEGGSNHAYTTP   90 (103)
T ss_pred             EECCCCCEEEEeCCCEeEECC
Confidence            9   553  877777655444

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.12  E-value=0.003  Score=52.56  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=49.6

Q ss_pred             ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 015154          320 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  387 (412)
Q Consensus       320 L~~VTFtW~g----~AkeV~LaG---SFNNW~~~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---D  387 (412)
                      .++|+|....    .|+.|+|+|   .+.+|+... +|..-.         ....+.|++.+.||+| .++|||++   |
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~   72 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD   72 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence            4688898743    389999999   567998631 232210         0245789999999999 79999999   4


Q ss_pred             C---eeecCCCCCccc
Q 015154          388 G---QWKVDPQRESVT  400 (412)
Q Consensus       388 G---eW~~DPd~PtVt  400 (412)
                      |   .|...++.-...
T Consensus        73 ~~~~~WE~g~nr~~~~   88 (99)
T cd05809          73 GTNKSWQGGQQSWYPV   88 (99)
T ss_pred             CCeeEEecCCCeeEEC
Confidence            4   287666654333

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.10  E-value=0.0017  Score=71.62  Aligned_cols=69  Identities=26%  Similarity=0.431  Sum_probs=51.9

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCeee-
Q 015154          319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK-  391 (412)
Q Consensus       319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIV---DGeW~-  391 (412)
                      |..-|+|+..++ |+.|.|+|+||+|... .+|.+.            ..|+|++.+. +.+| ..|||.|   ||.+. 
T Consensus       136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~------------~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~  202 (730)
T PRK12568        136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR------------IGGFWELFLPRVEAG-ARYKYAITAADGRVLL  202 (730)
T ss_pred             CCCcEEEEEECCCCCEEEEEEecCCCCccceecccC------------CCCEEEEEECCCCCC-CEEEEEEEcCCCeEee
Confidence            345689987666 9999999999999864 678763            6899999984 7777 3577777   78764 


Q ss_pred             -cCCCCCccc
Q 015154          392 -VDPQRESVT  400 (412)
Q Consensus       392 -~DPd~PtVt  400 (412)
                       .||-...+.
T Consensus       203 k~DPYA~~~e  212 (730)
T PRK12568        203 KADPVARQTE  212 (730)
T ss_pred             cCCCcceEee
Confidence             677655443

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.02  E-value=0.0026  Score=52.89  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEECC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG  388 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL-~LPPG~YEYKFIVDG  388 (412)
                      .++|+..++ |+.|.|.. |++|.  ..++|+++            ..|+|.+.+ .+.+|. .|+|.|||
T Consensus        10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g   66 (103)
T cd02856          10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG   66 (103)
T ss_pred             CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence            478876666 99999998 66664  34688764            579999998 466775 79999999

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.98  E-value=0.0068  Score=50.38  Aligned_cols=74  Identities=28%  Similarity=0.561  Sum_probs=50.8

Q ss_pred             ceEEEEEEec---CCceEEEEeee---CCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 015154          320 LEVVEIQYSG---DGEIVEVAGSF---NGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  387 (412)
Q Consensus       320 L~~VTFtW~g---~AkeV~LaGSF---NNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---D  387 (412)
                      .+.|+|....   .|+.|+|+|+-   .+|+.  .++|....        .+...+.|.+.+.||+| .++|||+|   |
T Consensus         6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~   77 (106)
T cd05811           6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD   77 (106)
T ss_pred             EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence            3567787654   38999999987   48986  35675420        01235789999999988 69999996   2


Q ss_pred             C--eeecCCCCCcccC
Q 015154          388 G--QWKVDPQRESVTK  401 (412)
Q Consensus       388 G--eW~~DPd~PtVtD  401 (412)
                      |  .|...++.-....
T Consensus        78 ~~~~WE~~~nr~~~~~   93 (106)
T cd05811          78 GSVTWESDPNRSYTVP   93 (106)
T ss_pred             CcEEEecCCCeEEECC
Confidence            3  3877765444333

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.98  E-value=0.0028  Score=54.44  Aligned_cols=55  Identities=24%  Similarity=0.558  Sum_probs=42.9

Q ss_pred             EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154          322 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  386 (412)
Q Consensus       322 ~VTFtW~g----~AkeV~LaGS---FNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV  386 (412)
                      .|+|....    .++.|+|+|+   +.+|+..  ++|....          ...+.|++.+.||++ .++|||++
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~   66 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV   66 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence            35666544    3899999999   8999853  5787530          145789999999998 89999999

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.83  E-value=0.0033  Score=68.28  Aligned_cols=67  Identities=31%  Similarity=0.451  Sum_probs=49.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC---ee--ec
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--KV  392 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDG---eW--~~  392 (412)
                      ..|+|+..++ |+.|.|.|+||+|... .+|.+.            ..|+|++.+. +.+| ..|||.|+|   .+  +.
T Consensus        38 ~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~  104 (639)
T PRK14706         38 EGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKM  104 (639)
T ss_pred             ccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCC-CEEEEEEECCCCCEEecc
Confidence            3588986666 9999999999999864 688874            5699999986 4555 468888864   43  56


Q ss_pred             CCCCCccc
Q 015154          393 DPQRESVT  400 (412)
Q Consensus       393 DPd~PtVt  400 (412)
                      ||-...+.
T Consensus       105 DPYa~~~~  112 (639)
T PRK14706        105 DPYGSFFE  112 (639)
T ss_pred             CcceEEEe
Confidence            77665444

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.81  E-value=0.0041  Score=52.69  Aligned_cols=59  Identities=25%  Similarity=0.427  Sum_probs=43.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCeee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWK  391 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~---~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW~  391 (412)
                      .++|+..++ |+.|.|.. |++|.   +  .++|.++.         .+..|+|.+.+. +.+|. .|+|.|+|.|.
T Consensus         8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~   73 (119)
T cd02852           8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE   73 (119)
T ss_pred             CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence            478976665 99999998 88886   2  35676531         124699999884 77886 69999998543

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.81  E-value=0.0041  Score=72.02  Aligned_cols=66  Identities=33%  Similarity=0.602  Sum_probs=49.1

Q ss_pred             CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---Cee--
Q 015154          319 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW--  390 (412)
Q Consensus       319 gL~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD---GeW--  390 (412)
                      +...|.|+..+| |+.|.|.|+||+|... .+|.+.           ...|+|++.++ +.+|. .|||.|+   |.|  
T Consensus       636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~  703 (1224)
T PRK14705        636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE  703 (1224)
T ss_pred             CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence            345688976665 9999999999999864 568763           35799999885 78885 5888884   555  


Q ss_pred             ecCCCC
Q 015154          391 KVDPQR  396 (412)
Q Consensus       391 ~~DPd~  396 (412)
                      +.||-.
T Consensus       704 k~DPyA  709 (1224)
T PRK14705        704 KADPLA  709 (1224)
T ss_pred             cCCccc
Confidence            456654

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.75  E-value=0.0081  Score=48.31  Aligned_cols=73  Identities=14%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC-CeeecCCCCCc
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD-GQWKVDPQRES  398 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVD-GeW~~DPd~Pt  398 (412)
                      ..++|+..++ |++|.|....  |. .++|.++            ..|.|++++..-+|. .|+|.|+ |..+.||....
T Consensus         8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~   71 (85)
T cd02853           8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF   71 (85)
T ss_pred             CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence            3588987666 9999999643  53 4789874            689999988533775 4777776 56888999887


Q ss_pred             ccCCCccceEE
Q 015154          399 VTKGGICNNIL  409 (412)
Q Consensus       399 VtD~G~vNNVL  409 (412)
                      ...+.+-+++|
T Consensus        72 ~~~~~~~~s~v   82 (85)
T cd02853          72 QPEGVHGPSQV   82 (85)
T ss_pred             CCCCCCCCeEe
Confidence            55432223443

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=96.73  E-value=0.0074  Score=67.02  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=65.1

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccchHHHHHHHhhCCCceEEEEEEecC-CceEEEEee
Q 015154          261 KFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSGD-GEIVEVAGS  339 (412)
Q Consensus       261 ~~m~~qkele~~~~k~q~e~~K~aLa~l~~k~~~~i~~Aq~ll~eK~~~LdaAe~aLsgL~~VTFtW~g~-AkeV~LaGS  339 (412)
                      +.-+.++...+.+.+++|++..-.|.-  --.+|+..=|+..-                 ..++|+..+| |+.|+|+|+
T Consensus        73 ~~~~~~r~~~~~~~~~~i~~~~~~l~~--f~~~y~~lGa~~~~-----------------~g~~FrvWAP~A~~V~LvGd  133 (758)
T PLN02447         73 EDHLRYRYSRYRRRREEIEKNEGGLEA--FSRGYEKFGFNRSE-----------------GGITYREWAPGAKAAALIGD  133 (758)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHH--HHHHHHhceeEEec-----------------CCEEEEEECCCCCEEEEEEe
Confidence            334445555666677777754443322  22234444444320                 2578876565 999999999


Q ss_pred             eCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEC---Ce--eecCCCC
Q 015154          340 FNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ--WKVDPQR  396 (412)
Q Consensus       340 FNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-------LPPG~YEYKFIVD---Ge--W~~DPd~  396 (412)
                      ||+|+.. .+|++.            ..|+|++.++       ++.|. .|||.|.   |.  .+.||-.
T Consensus       134 FN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya  190 (758)
T PLN02447        134 FNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWI  190 (758)
T ss_pred             cCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchH
Confidence            9999864 579874            6899999986       34453 6777774   54  4556644

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.70  E-value=0.014  Score=47.02  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=37.3

Q ss_pred             CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCC--e-eEEEEEEE
Q 015154          330 DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV  386 (412)
Q Consensus       330 ~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPP--G-~YEYKFIV  386 (412)
                      .|+.|+|+|+..   +|+.  .++|...           ...+.|.+.+.+|+  | .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence            489999999984   8985  3678653           12678999999999  7 79999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.65  E-value=0.019  Score=47.68  Aligned_cols=66  Identities=26%  Similarity=0.561  Sum_probs=47.7

Q ss_pred             EEEEEec----CCceEEEEeee---CCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE--C--
Q 015154          323 VEIQYSG----DGEIVEVAGSF---NGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D--  387 (412)
Q Consensus       323 VTFtW~g----~AkeV~LaGSF---NNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG--~YEYKFIV--D--  387 (412)
                      |+|+...    .++.|+|+|+-   .+|+.  .++|...            ....|++.+.+|++  .++|||++  +  
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~   69 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS   69 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence            5666543    48999999996   58985  3578652            46789999999986  59999998  2  


Q ss_pred             C--eeecCCCCCccc
Q 015154          388 G--QWKVDPQRESVT  400 (412)
Q Consensus       388 G--eW~~DPd~PtVt  400 (412)
                      |  .|..-++.-...
T Consensus        70 ~~~~WE~g~nr~~~~   84 (99)
T cd05816          70 GVVSWENGPNRELSA   84 (99)
T ss_pred             CcEEEEcCCCeEEEC
Confidence            3  277766655434

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.64  E-value=0.0071  Score=50.39  Aligned_cols=45  Identities=24%  Similarity=0.428  Sum_probs=36.7

Q ss_pred             CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154          330 DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  386 (412)
Q Consensus       330 ~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV  386 (412)
                      .|+.|+|+|+-   .+|+..  ++|...            ....|++.+.||+| .++|||+|
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~------------~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN------------EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC------------CCCCEEEEEEECCCCcEEEEEEE
Confidence            38999999995   689853  567642            45689999999988 69999999

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.61  E-value=0.015  Score=48.40  Aligned_cols=74  Identities=22%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             ceEEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 015154          320 LEVVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  386 (412)
Q Consensus       320 L~~VTFtW~-g---~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---  386 (412)
                      .++|+|... .   .|+.|+|+|+-.   +|+..  +.|...        ........|.+.+.||.| .++|||++   
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~   73 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG   73 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence            467888874 2   389999999874   99864  222110        001245689999999999 79999999   


Q ss_pred             CCe--eecCCCCCcccC
Q 015154          387 DGQ--WKVDPQRESVTK  401 (412)
Q Consensus       387 DGe--W~~DPd~PtVtD  401 (412)
                      ||.  |...++.-....
T Consensus        74 ~~~~~WE~g~nr~~~~p   90 (101)
T cd05807          74 DNTVTWESGSNHTYTAP   90 (101)
T ss_pred             CCCEEEEeCCCEEEeCC
Confidence            453  877666544433

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.61  E-value=0.0085  Score=49.11  Aligned_cols=53  Identities=28%  Similarity=0.511  Sum_probs=41.3

Q ss_pred             EEEEEEec----CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE
Q 015154          322 VVEIQYSG----DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV  386 (412)
Q Consensus       322 ~VTFtW~g----~AkeV~LaGSF---NNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV  386 (412)
                      +|+|+...    +++.|+|+|+-   .+|+...+|...            ..+.|.+.+.||+| .++|||++
T Consensus         2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence            56676543    35778899987   489887788652            45789999999998 59999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.57  E-value=0.0057  Score=64.92  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=52.6

Q ss_pred             EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC-eeecCCCCCcc
Q 015154          323 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV  399 (412)
Q Consensus       323 VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDG-eW~~DPd~PtV  399 (412)
                      |+|+..++ |++|.|.+   ++ ..++|.+.            ..|+|++++. +.+| +.|+|.||| .-+.||.....
T Consensus         1 v~FrlwAP~A~~V~L~l---~~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~   63 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRL---NG-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ   63 (542)
T ss_pred             CEEEEECCCCCEEEEEe---CC-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence            57876666 99999997   23 35789874            6799999996 7788 789999999 68889998876


Q ss_pred             cCCCccceEE
Q 015154          400 TKGGICNNIL  409 (412)
Q Consensus       400 tD~G~vNNVL  409 (412)
                      ..+.+..++|
T Consensus        64 ~~~~~~~S~V   73 (542)
T TIGR02402        64 PDGVHGPSQV   73 (542)
T ss_pred             ccCCCCCeEE
Confidence            5432223444

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.57  E-value=0.0076  Score=65.97  Aligned_cols=67  Identities=28%  Similarity=0.466  Sum_probs=48.7

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEEC-Cee--ecC
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD  393 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVD-GeW--~~D  393 (412)
                      ..|+|+..++ |++|.|.|+||+|... .+|.+.           ...|.|++.+. +++| .|.|++..+ |.|  ..|
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D  199 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD  199 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence            3589987776 9999999999999753 578764           26799999885 6777 677777664 454  445


Q ss_pred             CCCCc
Q 015154          394 PQRES  398 (412)
Q Consensus       394 Pd~Pt  398 (412)
                      |-.-.
T Consensus       200 PYa~~  204 (726)
T PRK05402        200 PYAFA  204 (726)
T ss_pred             CceEE
Confidence            54443

>PLN02316 synthase/transferase

Probab=96.43  E-value=0.034  Score=63.76  Aligned_cols=63  Identities=13%  Similarity=0.343  Sum_probs=45.3

Q ss_pred             CceEEEEEEec------CCceEEEEeeeCCCccccc--cCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC
Q 015154          319 GLEVVEIQYSG------DGEIVEVAGSFNGWHHRIK--MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG  388 (412)
Q Consensus       319 gL~~VTFtW~g------~AkeV~LaGSFNNW~~~Ip--M~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV-DG  388 (412)
                      .-.+|++.|+.      +..+|+|.|.||+|.+...  +..       .+...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus       327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~-------~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg  398 (1036)
T PLN02316        327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKL-------VKSEEKDGDWWYAEVVVPERALVLDWVFADG  398 (1036)
T ss_pred             CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCccccee-------ecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence            33689999973      3689999999999987421  111       0111234557889999999999999997 66

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.97  E-value=0.04  Score=46.07  Aligned_cols=67  Identities=27%  Similarity=0.446  Sum_probs=47.6

Q ss_pred             EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 015154          322 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  388 (412)
Q Consensus       322 ~VTFtW~-g---~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG  388 (412)
                      +|+|... +   .++.|+|+|+-.   +|+..  ++|...            ....|.+.+.||.| ..+|||++   +|
T Consensus         2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~   69 (97)
T cd05810           2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN   69 (97)
T ss_pred             eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence            4666632 2   489999999885   99853  556542            45689999999999 79999998   22


Q ss_pred             -----eeecCCCCCccc
Q 015154          389 -----QWKVDPQRESVT  400 (412)
Q Consensus       389 -----eW~~DPd~PtVt  400 (412)
                           .|...++.-+.+
T Consensus        70 ~~~~v~WE~g~Nr~~~~   86 (97)
T cd05810          70 PTAGVQWQGGGNNQLTT   86 (97)
T ss_pred             CcceEEEeeCCCEEEeC
Confidence                 477766654433

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.95  E-value=0.022  Score=61.22  Aligned_cols=68  Identities=24%  Similarity=0.324  Sum_probs=49.8

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC---Ce--eec
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV  392 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD---Ge--W~~  392 (412)
                      ..++|+..+| |+.|.|.|+||+|... .+|.+.           ...|+|++.+. +.+|. .|+|.|+   |.  ++.
T Consensus        28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~   95 (613)
T TIGR01515        28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA   95 (613)
T ss_pred             CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence            3678986666 9999999999999754 478763           24799999885 45665 5888884   54  467


Q ss_pred             CCCCCccc
Q 015154          393 DPQRESVT  400 (412)
Q Consensus       393 DPd~PtVt  400 (412)
                      ||-.-.+.
T Consensus        96 DPYA~~~~  103 (613)
T TIGR01515        96 DPYAFYAE  103 (613)
T ss_pred             CCCEeeec
Confidence            88765444

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PRK05402 glycogen branching enzyme; Provisional

Probab=95.74  E-value=0.02  Score=62.80  Aligned_cols=63  Identities=21%  Similarity=0.077  Sum_probs=45.3

Q ss_pred             EEEEEEec-CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE--CCe--eecCCCC
Q 015154          322 VVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR  396 (412)
Q Consensus       322 ~VTFtW~g-~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV--DGe--W~~DPd~  396 (412)
                      -++|+..+ .|++|.|.|+||+ ....+|.+.           ...|+|++.+++..|.. |||.|  ||+  .+.||-.
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            56786555 5999999999996 344688863           36799999999777733 55555  886  5557665


Q ss_pred             C
Q 015154          397 E  397 (412)
Q Consensus       397 P  397 (412)
                      -
T Consensus        96 f   96 (726)
T PRK05402         96 F   96 (726)
T ss_pred             c
Confidence            3

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.03  E-value=0.083  Score=43.75  Aligned_cols=65  Identities=20%  Similarity=0.453  Sum_probs=43.8

Q ss_pred             EEEE--EecC-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CCe-
Q 015154          323 VEIQ--YSGD-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ-  389 (412)
Q Consensus       323 VTFt--W~g~-AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DGe-  389 (412)
                      |+|.  +... |+.|+|+|+-   .+|+..  ++|...         .......|++.+.+|++ .++|||+|   ||. 
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~   72 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV   72 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence            4454  4433 8999999987   589753  567531         01234589999999988 69999999   342 


Q ss_pred             --eecCCCC
Q 015154          390 --WKVDPQR  396 (412)
Q Consensus       390 --W~~DPd~  396 (412)
                        |-..++.
T Consensus        73 ~~wE~g~nr   81 (101)
T cd05815          73 LRSESGEKR   81 (101)
T ss_pred             EEeecCCCE
Confidence              6555543

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.17  E-value=0.14  Score=54.98  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-eEEEEEEECCe--ee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK  391 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~-----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-~YEYKFIVDGe--W~  391 (412)
                      .|+|+..++ |+.|.|.+ |++|..     .++|.+.            ..|+|++.+. +.+| .|.|++-.+|.  +.
T Consensus        20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~   86 (605)
T TIGR02104        20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET   86 (605)
T ss_pred             eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence            489986666 99999997 888853     4678763            5799999986 5666 44444444565  48


Q ss_pred             cCCCCCccc
Q 015154          392 VDPQRESVT  400 (412)
Q Consensus       392 ~DPd~PtVt  400 (412)
                      .||-...+.
T Consensus        87 ~DPya~~~~   95 (605)
T TIGR02104        87 VDPYAKAVT   95 (605)
T ss_pred             cCCCcceec
Confidence            898776544

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=93.88  E-value=0.14  Score=42.37  Aligned_cols=63  Identities=24%  Similarity=0.550  Sum_probs=38.4

Q ss_pred             EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE-CC--ee
Q 015154          322 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW  390 (412)
Q Consensus       322 ~VTFtW~g------~AkeV~LaGSFNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV-DG--eW  390 (412)
                      +|+|.|..      ++..|.+.+.|++|+..  +.|.+..        .....+.|++++.+|..-|...|+. ||  .|
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~--------~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w   74 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMC--------VPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW   74 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEES--------S---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceee--------eeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence            67888843      37889999999999874  4565421        0123789999999999999999988 65  56


Q ss_pred             ec
Q 015154          391 KV  392 (412)
Q Consensus       391 ~~  392 (412)
                      -.
T Consensus        75 DN   76 (87)
T PF03423_consen   75 DN   76 (87)
T ss_dssp             ES
T ss_pred             eC
Confidence            43

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=93.68  E-value=0.5  Score=41.37  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=37.8

Q ss_pred             EecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----eEEEEEEE
Q 015154          327 YSGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV  386 (412)
Q Consensus       327 W~g~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG----~YEYKFIV  386 (412)
                      +-.++++|+|+|+-   .+|+..  ++|....-    + ........|.+.+.||+|    ..+|||+.
T Consensus        11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y----t-~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARK----A-LSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             ecCCCCEEEEEECchhcCCCCcccccccccccc----c-ccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            44568999999986   599854  45654200    0 000234579999999986    69999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.71  E-value=0.55  Score=48.54  Aligned_cols=81  Identities=20%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             CCceEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEE
Q 015154          318 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEI  382 (412)
Q Consensus       318 sgL~~VTFtW~g~-A-------keV~LaGSFNNW~~------~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEY  382 (412)
                      .+.+.|||-|+++ +       +.|+|.+  |+...      +..|.+-+           ...+|..++.||.. +-.|
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~--n~~tdh~~~~~~~~l~rl~-----------~tDvW~~~~~~p~~~r~sY  102 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYI--NGVTDHHQNSQPQSLQRIA-----------GTDVWQWSTELSANWRGSY  102 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEeC--CCCCCcCccCCcchhhccC-----------CCceEEEEEEECcccEEEE
Confidence            4568999999985 3       2588743  34432      33687753           67899999999999 8999


Q ss_pred             EEEEC---C-------------------------eeecCCCCCcccCC--CccceEEEe
Q 015154          383 KFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV  411 (412)
Q Consensus       383 KFIVD---G-------------------------eW~~DPd~PtVtD~--G~vNNVL~V  411 (412)
                      +|+++   .                         .-+.||.||....+  |...|+|.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l  161 (411)
T PRK10439        103 CFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM  161 (411)
T ss_pred             EEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence            99993   1                         11479999986542  444577654

>PLN02316 synthase/transferase

Probab=92.52  E-value=1.1  Score=51.87  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=43.5

Q ss_pred             ceEEEEEEecC------CceEEEEeeeCCCcccc------ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 015154          320 LEVVEIQYSGD------GEIVEVAGSFNGWHHRI------KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  386 (412)
Q Consensus       320 L~~VTFtW~g~------AkeV~LaGSFNNW~~~I------pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV  386 (412)
                      -.+|++.|+..      ..+|++.|+||.|.+..      .|.+.           ...+.|.+++.+|..-|-.-|+-
T Consensus       490 G~~v~v~Yn~~~t~l~~~~ev~~~g~~NrWth~~~~~~~~~m~~~-----------~~g~~~~a~v~vP~da~~mdfvF  557 (1036)
T PLN02316        490 GTTVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMVPA-----------DNGSHLKATVKVPLDAYMMDFVF  557 (1036)
T ss_pred             CCEEEEEECCCCCcCCCCceEEEEccccCcCCCCCCCCceeeeec-----------CCCceEEEEEEccccceEEEEEE
Confidence            35899999752      58899999999999752      25443           23345689999999999999987

>PLN02950 4-alpha-glucanotransferase

Probab=92.32  E-value=0.76  Score=52.46  Aligned_cols=71  Identities=20%  Similarity=0.373  Sum_probs=52.7

Q ss_pred             CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--eEEEEEEE-
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV-  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG--~YEYKFIV-  386 (412)
                      ..++|+|+...    .|+.|+|+|+-   .+|+..  ++|..            .....|++.+.+|.+  ..+|||++ 
T Consensus       151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~  218 (909)
T PLN02950        151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ  218 (909)
T ss_pred             CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence            34788888644    38999999987   499864  45654            246789999999988  59999998 


Q ss_pred             --CCe--eecCCCCCcccC
Q 015154          387 --DGQ--WKVDPQRESVTK  401 (412)
Q Consensus       387 --DGe--W~~DPd~PtVtD  401 (412)
                        +|.  |...++.-...+
T Consensus       219 ~~~g~v~WE~g~NR~~~~p  237 (909)
T PLN02950        219 TAEGLVSLELGVNRELSLD  237 (909)
T ss_pred             cCCCceEEeeCCCceeecC
Confidence              443  877777655544

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=90.17  E-value=0.72  Score=50.93  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=41.3

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  390 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW  390 (412)
                      .|+|+..++ |+.|.|. -|++|..    .++|.+.            ..|+|.+.+. +.+|.| |+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPER------------TDDIWHGYLPGAQPGQL-YGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccC------------CCCEEEEEECCCCCCCE-EEEEEeeee
Confidence            488986666 9999996 6666542    3578763            5799999995 778874 999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=90.10  E-value=0.96  Score=39.71  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             eEEEEEEe----cCCceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECCe-
Q 015154          321 EVVEIQYS----GDGEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ-  389 (412)
Q Consensus       321 ~~VTFtW~----g~AkeV~LaGSFNNW~~~-----IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIVDGe-  389 (412)
                      ..|||-|.    +....|.|-|..|++..+     ..|.+-           .+..+|..++.||.+ +=.|.|+.+-. 
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~   70 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD   70 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence            47999999    346789999999999654     346654           356799999999998 89999997532 


Q ss_pred             ---------------eecCCCCCccc-C----CCccceEEE
Q 015154          390 ---------------WKVDPQRESVT-K----GGICNNILR  410 (412)
Q Consensus       390 ---------------W~~DPd~PtVt-D----~G~vNNVL~  410 (412)
                                     -+.||-||... .    .|..-++++
T Consensus        71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~  111 (122)
T PF11806_consen   71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE  111 (122)
T ss_dssp             -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred             cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence                           35699999754 2    267777765

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PLN02950 4-alpha-glucanotransferase

Probab=89.21  E-value=1.9  Score=49.35  Aligned_cols=67  Identities=18%  Similarity=0.440  Sum_probs=46.7

Q ss_pred             eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 015154          321 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  388 (412)
Q Consensus       321 ~~VTFtW~g---~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG  388 (412)
                      +.|+|..+.   -|++|+|+|+-   .+|+..  ++|...         .......|++++.||.| ..+|||++   ||
T Consensus         9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g   79 (909)
T PLN02950          9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK   79 (909)
T ss_pred             EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence            556666543   38999999998   489753  567542         01234589999999988 69999995   44


Q ss_pred             e---eecCCCC
Q 015154          389 Q---WKVDPQR  396 (412)
Q Consensus       389 e---W~~DPd~  396 (412)
                      .   |...++.
T Consensus        80 ~vi~WE~g~NR   90 (909)
T PLN02950         80 NVLRWEAGKKR   90 (909)
T ss_pred             ceeeeecCCCe
Confidence            3   7666644

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=87.15  E-value=1.5  Score=51.19  Aligned_cols=66  Identities=15%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----eEEEEEEECC--
Q 015154          322 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG--  388 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGS-FNNW~~---~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG-----~YEYKFIVDG--  388 (412)
                      .++|+..++ |+.|.|.+- +++|..   .++|.+.            ..|+|++.+. +.+|     -|.|+|.|+|  
T Consensus       328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~  395 (1111)
T TIGR02102       328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG  395 (1111)
T ss_pred             CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence            378986666 999999984 455653   4688873            6899999986 4443     3688888876  


Q ss_pred             --eeecCCCCCcc
Q 015154          389 --QWKVDPQRESV  399 (412)
Q Consensus       389 --eW~~DPd~PtV  399 (412)
                        ....||-...+
T Consensus       396 ~~~~~~DPYA~al  408 (1111)
T TIGR02102       396 DKVLALDPYAKSL  408 (1111)
T ss_pred             ceEEEeChhheEE
Confidence              35678765543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=86.16  E-value=1.5  Score=48.38  Aligned_cols=55  Identities=25%  Similarity=0.441  Sum_probs=40.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  390 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW  390 (412)
                      .|.|+..++ |+.|.|.. |+++.  ..++|.+            ...|+|.+.+. +.+|. .|+|.|+|.|
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            488986665 99999997 77653  2467865            35789999985 66775 5999999854

>PLN02960 alpha-amylase

Probab=84.74  E-value=3.1  Score=47.71  Aligned_cols=59  Identities=19%  Similarity=0.357  Sum_probs=41.8

Q ss_pred             EEEEE-EecCCceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEE--EeCCee-------EEEEEEEC
Q 015154          322 VVEIQ-YSGDGEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGT-------YEIKFIVD  387 (412)
Q Consensus       322 ~VTFt-W~g~AkeV~LaGSFNNW~~~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL--~LPPG~-------YEYKFIVD  387 (412)
                      -|.|. |.-+|..+.|.|+||||.+.. .|.+-       -.++.+-|.|.+++  .|.+|.       -||.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREG-------YFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhcc-------cccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            56664 666699999999999999864 34310       13345789999998  488772       36777775

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=83.64  E-value=4  Score=46.89  Aligned_cols=68  Identities=19%  Similarity=0.236  Sum_probs=47.5

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------Ce-
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ-  389 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD------Ge-  389 (412)
                      ..++|+..+| |+.|.|.+-+++|.  ..++|.++           ...|+|++.+. ...|.| |+|.|+      |. 
T Consensus       135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v  202 (898)
T TIGR02103       135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV  202 (898)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence            3688987666 99999997776664  23678764           25799999985 456643 777775      54 


Q ss_pred             ---eecCCCCCccc
Q 015154          390 ---WKVDPQRESVT  400 (412)
Q Consensus       390 ---W~~DPd~PtVt  400 (412)
                         ...||-...+.
T Consensus       203 ~~~~v~DPYA~als  216 (898)
T TIGR02103       203 ETYLVTDPYSVSLS  216 (898)
T ss_pred             CCeEEeCcCcceEc
Confidence               36788776554

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=80.92  E-value=8.4  Score=31.57  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=37.3

Q ss_pred             eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE
Q 015154          321 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV  386 (412)
Q Consensus       321 ~~VTFtW~g---~AkeV~LaGSFNN--W~-~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV  386 (412)
                      .+|+|+...   +...|.|.-.-+.  |. ..++|.+..+        +.....|++++.++.|++.|.|.|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence            455555533   3678888765443  22 2478877521        112235999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	9e-19
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	1e-18
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	5e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-05
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	6e-04
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	9e-04

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 84.3 bits (207), Expect = 9e-19
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 323 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 382
           VEI++   G  V V GSF  W   I + P              +  +   L L PGT+  
Sbjct: 6   VEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRF 55

Query: 383 KFIVDGQWKVDPQRESVT-KGGICNNILRV 411
           +FIVD + +V     + T + G   N + V
Sbjct: 56  RFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 312 AAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWST 371
             E++ +       +++G G+ V ++GSFN W  ++ M              R    +  
Sbjct: 2   VNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMT-------------RSQNNFVA 47

Query: 372 VLWLYPGTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 411
           +L L  G ++ KF VDGQW  DP    VT   G  NNI++V
Sbjct: 48  ILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 88

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 324 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 383
                     VE++G   GW  RI +              + +  W     L  G +E K
Sbjct: 174 LTLKDKGFSRVEISGLDIGWGQRIPL-----------TLGKGTGFWILKRELPEGQFEYK 222

Query: 384 FIVDGQWKVDPQRESVT--KGGICNNILRVI 412
           +I+DG+W  +     +   K G  NN  +V+
Sbjct: 223 YIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 66/381 (17%), Positives = 124/381 (32%), Gaps = 110/381 (28%)

Query: 62  EELYNDLREFLSTVGLSESHVPSMK-ELSAHGRDDLAN---------IVRRRGYKFIRQL 111
           EE+     +FL +   +E   PSM   +    RD L N         + R + Y  +RQ 
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 112 LKSSTKP-------GFNGFVAEKS-LAG---QDEKVANEVED----VSLSVEVSSVRDCF 156
           L    +P       G  G    K+ +A       KV  +++     ++L    +S     
Sbjct: 144 LLE-LRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 157 PK--SLS---DPSFVGEVSPNLNGHYEKADMEEKVANFIQNGD----LDIIED------- 200
                L    DP++      + N       ++ ++   +++      L ++ +       
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 201 RAM-----ILNGSALTS--KQIASF---ATVNHPLSEDHLGTGVEGADFDSSEVEVIARR 250
            A      IL    LT+  KQ+  F   AT  H   + H  T          EV+ +   
Sbjct: 260 NAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEVKSLL-- 307

Query: 251 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEK-LALSVLQTKAVTEINKAE---KLISDK 306
                    LK++    +     L  ++       LS++       +   +    +  DK
Sbjct: 308 ---------LKYL----DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 307 DEELIAAEESLSGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKS 366
              +I  E SL+ LE  E +                     ++   P S+ I        
Sbjct: 355 LTTII--ESSLNVLEPAEYR-----------------KMFDRLSVFPPSAHIPT-----I 390

Query: 367 RLWSTVLWLYPGTYEIKFIVD 387
            L  +++W      ++  +V+
Sbjct: 391 LL--SLIWFDVIKSDVMVVVN 409

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 14/80 (17%)

Query: 323 VEIQYSGDGEIVEVAGSFNGWH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYE 381
               +    + + + G F   +   +K+              +        L L+PG Y 
Sbjct: 22  FTRHWPQYAKNIYLIGEFTSLYPGFVKL-------------RKIEEQGIVYLKLWPGEYG 68

Query: 382 IKFIVDGQWKVDPQRESVTK 401
             F +D  ++     ++  K
Sbjct: 69  YGFQIDNDFENVLDPDNEEK 88

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 229 HLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 288
           HLG    G DFDS  +  +    +    ID     L    + + RLKE  EK K+ LS  
Sbjct: 226 HLG----GEDFDSRLINYLVEEFKKDQGID-----LRNDPLAMQRLKEAAEKAKIELSSA 276

Query: 289 QTKAVTEIN 297
           Q    T++N
Sbjct: 277 QQ---TDVN 282

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 21/93 (22%)

Query: 234 VEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAV 293
           +  AD  + E E I + RE Q +                RL+E     K+     + KA 
Sbjct: 74  IAQADRLTQEPESIRKWREEQRK----------------RLQELDAASKVMEQEWREKAK 117

Query: 294 TEI-----NKAEKLISDKDEELIAAEESLSGLE 321
            ++      ++E++  +K    IA +      +
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 229 HLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 288
           HLG    G DFD   ++ +  + + +  ID     L + +M L RLK+  EK K  LS +
Sbjct: 195 HLG----GDDFDQVIIDYLVNQFKQEHGID-----LSKDKMALQRLKDAAEKAKKELSGV 245

Query: 289 QTKAVTEIN 297
                T+I+
Sbjct: 246 TQ---TQIS 251

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 229 HLGTGVEGADFDSSEVEVIARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 288
           HLG    G DFDS  +  +    +    ID     L    + + RLKE  EK K+ LS  
Sbjct: 226 HLG----GEDFDSRLINYLVEEFKKDQGID-----LRNDPLAMQRLKEAAEKAKIELSSA 276

Query: 289 QTKAVTEIN 297
           Q    T++N
Sbjct: 277 QQ---TDVN 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.89
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.87
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.87
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.48
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.17
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.21
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.16
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	97.85
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.44
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.24
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.08
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.05
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.95
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	95.95
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.73
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.69
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.54
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.32
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.3
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	95.12
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.07
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.02
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	94.91
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	93.97
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	93.27
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	92.74
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	92.55
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	91.47
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	91.43
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	91.12
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	90.81
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	90.72
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	90.54
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	87.21
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	85.96
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	85.15
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	81.78
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	80.7

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.89  E-value=1.3e-23  Score=200.70  Aligned_cols=119  Identities=24%  Similarity=0.373  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhhhccccccccccchH------HHHHHHhh-C--CCceEEEEEEec-CCceEEEEeeeCCCccccccCCC
Q 015154          283 LALSVLQTKAVTEINKAEKLISDKDE------ELIAAEES-L--SGLEVVEIQYSG-DGEIVEVAGSFNGWHHRIKMDPL  352 (412)
Q Consensus       283 ~aLa~l~~k~~~~i~~Aq~ll~eK~~------~LdaAe~a-L--sgL~~VTFtW~g-~AkeV~LaGSFNNW~~~IpM~kd  352 (412)
                      .++|||-.+.++.+.+|-..+.++++      .+..|... +  -..++|+|+|.+ +|++|+|+||||||...++|.++
T Consensus       123 vv~ayLm~~~g~s~~~A~~~v~~~Rp~~Pn~~~l~~~~~~~L~~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~  202 (294)
T 3nme_A          123 VALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLG  202 (294)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEEC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhCCCCCChhhhhHHHHHhhhccccccceeeeccCCCCEEEEEEeccCCCCcccceEc
Confidence            67899999989999999888877665      22222222 3  334899999999 59999999999999988999986


Q ss_pred             CCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCcc-cC-CCccceEEEeC
Q 015154          353 PSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV-TK-GGICNNILRVI  412 (412)
Q Consensus       353 ~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtV-tD-~G~vNNVL~V~  412 (412)
                                 ...|.|++++.||||+|+|||+|||+|++||++|.+ .+ .|+.||+|.|.
T Consensus       203 -----------~~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~  253 (294)
T 3nme_A          203 -----------KGTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVV  253 (294)
T ss_dssp             -----------TTTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEEC
T ss_pred             -----------CCCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEEC
Confidence                       247999999999999999999999999999999987 45 69999999984

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.87  E-value=1.9e-22  Score=165.61  Aligned_cols=81  Identities=35%  Similarity=0.593  Sum_probs=73.5

Q ss_pred             CCceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCC
Q 015154          318 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  397 (412)
Q Consensus       318 sgL~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~P  397 (412)
                      ...++|+|+|..+|++|+|+|+||+|+ .++|.++             .|.|++++.|+||.|+|||+|||+|++||..|
T Consensus         8 ~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~-------------~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~   73 (96)
T 1z0n_A            8 AQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS-------------QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEP   73 (96)
T ss_dssp             --CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE-------------TTEEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC-------------CCEEEEEEEccCCCEEEEEEECCeEEcCCCCC
Confidence            456899999998899999999999999 7899862             48999999999999999999999999999999


Q ss_pred             cccC-CCccceEEEeC
Q 015154          398 SVTK-GGICNNILRVI  412 (412)
Q Consensus       398 tVtD-~G~vNNVL~V~  412 (412)
                      ++.+ .|+.||+|.|.
T Consensus        74 ~~~d~~G~~Nnvi~V~   89 (96)
T 1z0n_A           74 IVTSQLGTVNNIIQVK   89 (96)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             eEECCCCCEeEEEEEc
Confidence            9887 69999999984

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.87  E-value=3.3e-22  Score=189.87  Aligned_cols=84  Identities=31%  Similarity=0.438  Sum_probs=77.1

Q ss_pred             CceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCc
Q 015154          319 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  398 (412)
Q Consensus       319 gL~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~Pt  398 (412)
                      .+++|+|+|.++|++|+|+|+|++|.+.++|.+..          .++|.|++++.|+||+|+|||+|||+|++||++|+
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~----------~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~   71 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPT   71 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceecc----------CCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCE
Confidence            56899999999999999999999999888998731          35789999999999999999999999999999999


Q ss_pred             ccC-CCccceEEEeC
Q 015154          399 VTK-GGICNNILRVI  412 (412)
Q Consensus       399 VtD-~G~vNNVL~V~  412 (412)
                      +.+ .|+.||+|.|.
T Consensus        72 ~~d~~G~~nNvi~V~   86 (252)
T 2qlv_B           72 ATDQMGNFVNYIEVR   86 (252)
T ss_dssp             EBCSSCCCEEEEEEC
T ss_pred             EecCCCcCcceeecc
Confidence            887 69999999984

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.48  E-value=3.4e-14  Score=148.49  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CceEEEEEEec--CCceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeee--cC
Q 015154          319 GLEVVEIQYSG--DGEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK--VD  393 (412)
Q Consensus       319 gL~~VTFtW~g--~AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~--~D  393 (412)
                      +..+|+|++..  +|++|+|+||||+|++ ..+|.+             .+|.|++++.||||+|+|||+|||+|.  +|
T Consensus        16 ~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~-------------~~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d   82 (696)
T 4aee_A           16 GRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRK-------------IEEQGIVYLKLWPGEYGYGFQIDNDFENVLD   82 (696)
T ss_dssp             EEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEE-------------ETTEEEEEEEECSEEEEEEEEETTCCSCCCC
T ss_pred             CcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEe-------------cCCeEEEEEEcCCceEEEEEEECCEEeecCC
Confidence            56789999877  5999999999999975 367875             489999999999999999999999999  88


Q ss_pred             CCCCccc---C-CCccceEE
Q 015154          394 PQRESVT---K-GGICNNIL  409 (412)
Q Consensus       394 Pd~PtVt---D-~G~vNNVL  409 (412)
                      |++|...   + .|..|+|.
T Consensus        83 ~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           83 PDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             TTCCCEEEEECSSCTTSEEE
T ss_pred             CCCCcccccccCCcccccee
Confidence            9988744   3 48899885

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.17  E-value=3.2e-11  Score=124.54  Aligned_cols=68  Identities=22%  Similarity=0.510  Sum_probs=59.9

Q ss_pred             ceEEEEEEecCCceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCc
Q 015154          320 LEVVEIQYSGDGEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES  398 (412)
Q Consensus       320 L~~VTFtW~g~AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~Pt  398 (412)
                      +..|.|.++..|+.|+|.|+||+|.+. .+|++             .+|.|.+++.||||.|+|||+|||+|..||.+|.
T Consensus        16 ~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~-------------~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~   82 (645)
T 4aef_A           16 VAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ-------------EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPE   82 (645)
T ss_dssp             EEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE-------------CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCC
T ss_pred             EEEEEEecCCCCeEEEEEEcCCCCCCCcccceE-------------cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCC
Confidence            357888899989999999999999863 56765             4689999999999999999999999999999986


Q ss_pred             cc
Q 015154          399 VT  400 (412)
Q Consensus       399 Vt  400 (412)
                      ..
T Consensus        83 ~~   84 (645)
T 4aef_A           83 RR   84 (645)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.21  E-value=3e-06  Score=82.71  Aligned_cols=81  Identities=21%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             CCceEEEEEEecC-C-------ceEEEEeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeE-EE
Q 015154          318 SGLEVVEIQYSGD-G-------EIVEVAGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTY-EI  382 (412)
Q Consensus       318 sgL~~VTFtW~g~-A-------keV~LaGSFNNW~~------~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~Y-EY  382 (412)
                      .+.+.|||.|.++ |       ++|+|.  +++|..      +.+|++.           ...|+|+.++.|++|.| .|
T Consensus        28 ~~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r~-----------~~~~~W~~t~~l~~~~~~~Y   94 (403)
T 3c8d_A           28 DEMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQRI-----------AGTDVWQWTTQLNANWRGSY   94 (403)
T ss_dssp             SSEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEEC-----------TTSSEEEEEEEEETTCEEEE
T ss_pred             CCcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCccccccC-----------CCCCeEEEEEEECCCcEEEE
Confidence            3568999999987 5       799998  344432      2468774           26899999999999999 99


Q ss_pred             EEEEC------------------------CeeecCCCCCcccC-C-CccceEEEe
Q 015154          383 KFIVD------------------------GQWKVDPQRESVTK-G-GICNNILRV  411 (412)
Q Consensus       383 KFIVD------------------------GeW~~DPd~PtVtD-~-G~vNNVL~V  411 (412)
                      .|+||                        |..+.||.+|.... . |...|+|+|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~  149 (403)
T 3c8d_A           95 CFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  149 (403)
T ss_dssp             EEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             EEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC
Confidence            99999                        78889999998764 4 777888875

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.16  E-value=8.6e-06  Score=70.11  Aligned_cols=71  Identities=24%  Similarity=0.573  Sum_probs=53.8

Q ss_pred             CceEEEEEEecC---CceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 015154          319 GLEVVEIQYSGD---GEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  386 (412)
Q Consensus       319 gL~~VTFtW~g~---AkeV~LaGS---FNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---  386 (412)
                      ....|+|+....   ++.|+|+|+   +.+|++.  ++|....        -+.....|++++.||.| .+||||+|   
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyvi~~~   78 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPEN--------DTGESMLWKATIVLSRGVSVQYRYFKGYF   78 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECC--------TTCCSSEEEEEEEECTTCCEEEEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccc--------cCCCCCeEEEEEEcCCCCcEEEEEEEEee
Confidence            457889988763   899999999   8999973  6787631        01257899999999998 69999999   


Q ss_pred             -----C-C-------eeecCCCCC
Q 015154          387 -----D-G-------QWKVDPQRE  397 (412)
Q Consensus       387 -----D-G-------eW~~DPd~P  397 (412)
                           + |       .|...+++.
T Consensus        79 ~~~~~~~g~~~v~~~~WE~g~~NR  102 (131)
T 2z0b_A           79 LEPKTIGGPCQVIVHKWETHLQPR  102 (131)
T ss_dssp             ECCCC----CEEEEEEECCSSCCE
T ss_pred             cCccccCCccccceeeECCCCCCc
Confidence                 5 3       688887443

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=97.85  E-value=1e-05  Score=66.66  Aligned_cols=75  Identities=27%  Similarity=0.505  Sum_probs=55.7

Q ss_pred             CceEEEEEEecC---CceEEEEeee---CCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEC--
Q 015154          319 GLEVVEIQYSGD---GEIVEVAGSF---NGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  387 (412)
Q Consensus       319 gL~~VTFtW~g~---AkeV~LaGSF---NNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIVD--  387 (412)
                      +.+.|+|.....   |+.|+|+|+.   .+|++  .++|....        -+.+.+.|++++.||+| .+||||+|.  
T Consensus         5 ~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~v~~~   76 (108)
T 1ac0_A            5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             CCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSS--------SSSSCSSCEEEECCCSSSCEECCCEECCS
T ss_pred             CeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccc--------cCCcCCeEEEEEEeCCCCeEEEEEEEEcC
Confidence            446788887653   8999999986   59986  36787631        00145799999999999 599999993  


Q ss_pred             -C--eeecCCCCCcccC
Q 015154          388 -G--QWKVDPQRESVTK  401 (412)
Q Consensus       388 -G--eW~~DPd~PtVtD  401 (412)
                       |  .|..+|+.-....
T Consensus        77 ~g~~~WE~g~nR~~~~p   93 (108)
T 1ac0_A           77 DDSVEWESDPNREYTVP   93 (108)
T ss_dssp             SSCCCCCCSSCCEECCC
T ss_pred             CCCEEeccCCCEEEECC
Confidence             4  4888887766554

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.44  E-value=0.00035  Score=72.37  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCee--ec
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--KV  392 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIV---DGeW--~~  392 (412)
                      ..|+|+..++ |+.|.|.|+|++|.. .++|.+.           ...|+|++++. +.+|.+ |+|.|   ||.+  ..
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-----------~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~   92 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKS   92 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEEC
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-----------CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEec
Confidence            5789976555 999999999999975 4789863           25799999987 788874 99999   6775  56


Q ss_pred             CCCCCccc
Q 015154          393 DPQRESVT  400 (412)
Q Consensus       393 DPd~PtVt  400 (412)
                      ||-...+.
T Consensus        93 DPya~~~~  100 (617)
T 1m7x_A           93 DPYAFEAQ  100 (617)
T ss_dssp             CTTCSSEE
T ss_pred             Cccceeec
Confidence            87665443

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.24  E-value=0.00046  Score=73.92  Aligned_cols=69  Identities=26%  Similarity=0.342  Sum_probs=52.8

Q ss_pred             ceEEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE---CCee--e
Q 015154          320 LEVVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQW--K  391 (412)
Q Consensus       320 L~~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIV---DGeW--~  391 (412)
                      ..-|+|+..++ |+.|.|.|+||+|+. ..+|.+.           ...|+|++.+. +.+|. .|||.|   ||+|  +
T Consensus       135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~  202 (722)
T 3k1d_A          135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-----------GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDR  202 (722)
T ss_dssp             EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-----------GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEc-----------CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEe
Confidence            44689976665 999999999999986 4688764           24699999986 88885 588888   5764  6


Q ss_pred             cCCCCCccc
Q 015154          392 VDPQRESVT  400 (412)
Q Consensus       392 ~DPd~PtVt  400 (412)
                      .||-...+.
T Consensus       203 ~DPya~~~~  211 (722)
T 3k1d_A          203 ADPFAFGTE  211 (722)
T ss_dssp             CCTTCSSBC
T ss_pred             ecccceeec
Confidence            788776554

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.08  E-value=0.00065  Score=72.86  Aligned_cols=64  Identities=20%  Similarity=0.401  Sum_probs=48.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-------eCCeeEEEEEEEC---Ce
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ  389 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-------LPPG~YEYKFIVD---Ge  389 (412)
                      .|+|+..++ |+.|.|.|+||+|.. .++|.+.            ..|+|++.+.       +++|.+ |||.|+   |.
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~------------~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~  132 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD------------KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGA  132 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC------------TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCC
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeC------------CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCc
Confidence            588975555 999999999999975 4788863            5799999998       788865 888886   45


Q ss_pred             e--ecCCCCCc
Q 015154          390 W--KVDPQRES  398 (412)
Q Consensus       390 W--~~DPd~Pt  398 (412)
                      |  +.||-...
T Consensus       133 ~~~~~dpya~~  143 (755)
T 3aml_A          133 WVDRIPAWIRY  143 (755)
T ss_dssp             CEEECCTTCSC
T ss_pred             EEecCCcchhe
Confidence            5  34664443

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.05  E-value=0.017  Score=60.53  Aligned_cols=71  Identities=21%  Similarity=0.382  Sum_probs=53.7

Q ss_pred             CceEEEEEEec-----CCceEEEEeeeC---CCcc--------cc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eE
Q 015154          319 GLEVVEIQYSG-----DGEIVEVAGSFN---GWHH--------RI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TY  380 (412)
Q Consensus       319 gL~~VTFtW~g-----~AkeV~LaGSFN---NW~~--------~I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~Y  380 (412)
                      +.+.|+|+...     .|+.|+|+|+-.   +|++        .+ +|..            .....|++++.||+| .+
T Consensus       580 ~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~------------~~~~~W~~~v~l~~~~~~  647 (686)
T 1qho_A          580 TQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLA------------PNYPDWFYVFSVPAGKTI  647 (686)
T ss_dssp             SEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBC------------TTTTSEEEEEEEETTCEE
T ss_pred             CeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhccccc------------CCCCcEEEEEEeCCCCeE
Confidence            35678888764     478999999984   8987        23 5543            256789999999998 69


Q ss_pred             EEEEEE---CC--eeecCCCCCcccC
Q 015154          381 EIKFIV---DG--QWKVDPQRESVTK  401 (412)
Q Consensus       381 EYKFIV---DG--eW~~DPd~PtVtD  401 (412)
                      ||||+|   +|  +|...|+.-....
T Consensus       648 eyKy~~~~~~~~~~We~~~nr~~~~~  673 (686)
T 1qho_A          648 QFKFFIKRADGTIQWENGSNHVATTP  673 (686)
T ss_dssp             EEEEEEECTTSCEEECCSSCEEEECC
T ss_pred             EEEEEEEcCCCCEEeCCCCCeeEECC
Confidence            999998   34  4888877766554

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.95  E-value=0.026  Score=59.06  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=55.2

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSFN---NW~~~--I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV-  386 (412)
                      +.+.|+|+...    .|+.|+|+|+-.   +|++.  + +|....         ......|++++.||.| .+||||++ 
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~v~~  648 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV---------VYSYPTWYIDVSVPEGKTIEFKFIKK  648 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEESSCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            45788998865    389999999875   99864  5 666410         0256799999999988 79999998 


Q ss_pred             --CC--eeecCCCCCcccC
Q 015154          387 --DG--QWKVDPQRESVTK  401 (412)
Q Consensus       387 --DG--eW~~DPd~PtVtD  401 (412)
                        +|  .|...++.-....
T Consensus       649 ~~~~~~~WE~g~Nr~~~~~  667 (680)
T 1cyg_A          649 DSQGNVTWESGSNHVYTTP  667 (680)
T ss_dssp             CTTSCEEECCSSCEEEECC
T ss_pred             eCCCCeEeCCCCCeeEECC
Confidence              34  4888877665554

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=95.95  E-value=0.015  Score=49.01  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             eEEEEEEecCCceEEEEeeeC--CCccc--cccCCCCCCCccccccccCCCcE-EEEEEeCCe-eEEEEEEECCe--eec
Q 015154          321 EVVEIQYSGDGEIVEVAGSFN--GWHHR--IKMDPLPSSSIIEPIRSRKSRLW-STVLWLYPG-TYEIKFIVDGQ--WKV  392 (412)
Q Consensus       321 ~~VTFtW~g~AkeV~LaGSFN--NW~~~--IpM~kd~ss~~~a~~~sk~~G~F-s~tL~LPPG-~YEYKFIVDGe--W~~  392 (412)
                      ..|+|.|..+.+.|+|...+.  +|...  ++|.+.           .-++ | .+++.|+.| .++|+|. ||.  |-.
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~-----------~~~g-w~~~TI~l~~g~~~~~~F~-dG~~~WDN   71 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA-----------EISG-YAKITVDIGSASQLEAAFN-DGNNNWDS   71 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE-----------TTTT-EEEEEEECTTCSCEEEEEE-CSSSCEES
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc-----------cCCC-eEEEEEECCCCCEEEEEEe-CCCCcCcC
Confidence            578999998899999999984  89864  578753           1134 6 699999976 8999995 874  998


Q ss_pred             CCCCCc
Q 015154          393 DPQRES  398 (412)
Q Consensus       393 DPd~Pt  398 (412)
                      ++....
T Consensus        72 n~g~Ny   77 (104)
T 2laa_A           72 NNTKNY   77 (104)
T ss_dssp             TTTSCE
T ss_pred             CCCccE
Confidence            877654

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.73  E-value=0.024  Score=59.47  Aligned_cols=73  Identities=27%  Similarity=0.517  Sum_probs=53.1

Q ss_pred             eEEEEEEecC---CceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---CC
Q 015154          321 EVVEIQYSGD---GEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG  388 (412)
Q Consensus       321 ~~VTFtW~g~---AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---DG  388 (412)
                      +.|+|+....   |+.|+|+|+-.   +|++  .++|....        -+..+..|++++.||+| .+||||+|   +|
T Consensus       497 v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~--------~t~~~~~W~~~v~lp~~~~~eYKyvv~~~~g  568 (599)
T 2vn4_A          497 VAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVN--------YADNHPLWIGTVNLEAGDVVEYKYINVGQDG  568 (599)
T ss_dssp             EEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTT--------CBTTBCEEEEEEEEETTCEEEEEEEEECTTC
T ss_pred             EEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeeccccc--------CCCCCCcEEEEEEcCCCCcEEEEEEEECCCC
Confidence            5688887653   89999999884   8986  36787631        00124789999999998 69999998   34


Q ss_pred             --eeecCCCCCcccC
Q 015154          389 --QWKVDPQRESVTK  401 (412)
Q Consensus       389 --eW~~DPd~PtVtD  401 (412)
                        .|...|+.-....
T Consensus       569 ~~~WE~g~NR~~~~p  583 (599)
T 2vn4_A          569 SVTWESDPNHTYTVP  583 (599)
T ss_dssp             CEEECCSSCEEEECC
T ss_pred             ceEeCCCCCEEEecC
Confidence              3877777655444

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.69  E-value=0.011  Score=63.08  Aligned_cols=56  Identities=9%  Similarity=0.094  Sum_probs=43.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eC------CeeEEEEEEECC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LY------PGTYEIKFIVDG  388 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~-----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LP------PG~YEYKFIVDG  388 (412)
                      .|+|+..++ |+.|.|.+ |++|..     .++|.+.            ..|+|++.+. +.      +|.|.|+|.|+|
T Consensus        17 ~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g   83 (750)
T 1bf2_A           17 NITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA------------GSGVWAVTVPVSSIKAAGITGAVYYGYRAWG   83 (750)
T ss_dssp             EEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC------------STTEEEEEEEHHHHHHTTCCSCCEEEEEEEB
T ss_pred             EEEEEEECCCCCEEEEEE-EccCCCCccceEEecccC------------CCCEEEEEECCcccccccCCCCEEEEEEEEe
Confidence            388875555 99999998 987653     4678753            5699999986 66      899999999998


Q ss_pred             ee
Q 015154          389 QW  390 (412)
Q Consensus       389 eW  390 (412)
                      .|
T Consensus        84 ~~   85 (750)
T 1bf2_A           84 PN   85 (750)
T ss_dssp             TT
T ss_pred             ee
Confidence            53

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.54  E-value=0.0071  Score=61.97  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=49.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-eecCCCCCc
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  398 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe-W~~DPd~Pt  398 (412)
                      .|+|+..++ |+.|.|.|.|+   ..++|.+.            ..|+|++.+. +.+|. .|+|.|||. ...||-...
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~------------~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERD------------EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEEC------------TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccC------------CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            578876665 99999999987   56899874            5799999996 88895 699999997 788987653

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.32  E-value=0.019  Score=60.09  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=42.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ  389 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~--~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe  389 (412)
                      .|+|+..++ |+.|.|.+ |+++.  ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGH------------SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE------------ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC------------CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            588975555 99999999 98765  35789753            5699999885 788987 99999984

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.30  E-value=0.037  Score=57.90  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=53.8

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSFN---NW~~~--I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV-  386 (412)
                      +.+.|+|+...    .|+.|+|+|+-.   +|++.  + +|....         +.....|++++.||.| .+||||++ 
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~  652 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQV---------VYQYPTWYYDVSVPAGTTIQFKFIKK  652 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSS---------SSCTTSEEEEEEEETTCEEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccC---------CCCCCcEEEEEEeCCCCcEEEEEEEE
Confidence            35788998866    389999999885   99863  5 676410         0246799999999988 79999997 


Q ss_pred             CC---eeecCCCCCcccC
Q 015154          387 DG---QWKVDPQRESVTK  401 (412)
Q Consensus       387 DG---eW~~DPd~PtVtD  401 (412)
                      |+   .|...|+.-....
T Consensus       653 ~~~~~~WE~g~Nr~~~~~  670 (683)
T 3bmv_A          653 NGNTITWEGGSNHTYTVP  670 (683)
T ss_dssp             SSSCCEECCSSCEEEECC
T ss_pred             cCCceEecCCCCeeEECC
Confidence            32   4777766555444

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=95.12  E-value=0.046  Score=56.49  Aligned_cols=72  Identities=19%  Similarity=0.279  Sum_probs=52.6

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc---cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR---IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSFN---NW~~~---IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV-  386 (412)
                      ..+.|+|+...    .|+.|+|+|+-.   +|+..   ++|...           ..++.|++++.||.| ..||||+| 
T Consensus       418 ~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-----------~~p~~W~~~v~lp~~~~~eYKyv~~  486 (516)
T 1vem_A          418 TPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-----------SHSNDWRGNVVLPAERNIEFKAFIK  486 (516)
T ss_dssp             CEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-----------TTTTEEEEEEEEETTCCEEEEEEEE
T ss_pred             CccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-----------CCCCEEEEEEEECCCCcEEEEEEEE
Confidence            35789998764    389999999884   89874   356431           234599999999988 59999998 


Q ss_pred             C--C---eeecCCCCCcccC
Q 015154          387 D--G---QWKVDPQRESVTK  401 (412)
Q Consensus       387 D--G---eW~~DPd~PtVtD  401 (412)
                      |  |   +|...++.-....
T Consensus       487 ~~~g~v~~WE~g~NR~~~~p  506 (516)
T 1vem_A          487 SKDGTVKSWQTIQQSWNPVP  506 (516)
T ss_dssp             CTTSCEEEECSSCEEESSCC
T ss_pred             eCCCCeeEEeCCCCEEEecC
Confidence            3  3   4777766554444

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.07  E-value=0.016  Score=60.22  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCccc
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  400 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtVt  400 (412)
                      .|+|+..++ |+.|.|.|.   + ..++|.+.            ..|+|++.+.+.+|.+ |+|.|||....||-...+.
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~------------~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeC------------CCcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            688875555 999999994   2 45889873            4689999999889986 9999999767788766543

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.02  E-value=0.05  Score=56.91  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             CceEEEEEEec----CCceEEEEeeeC---CCccc--c-ccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSFN---GWHHR--I-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSFN---NW~~~--I-pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV-  386 (412)
                      ..+.|+|+...    .|+.|+|+|+-.   +|++.  + +|....         +.....|++++.||.| .+||||++ 
T Consensus       585 ~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~---------~~~~~~W~~~v~lp~~~~~eyK~~~~  655 (686)
T 1d3c_A          585 DQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQV---------VYQYPNWYYDVSVPAGKTIEFKFLKK  655 (686)
T ss_dssp             SEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSS---------SSCTTCEEEEEEEETTCEEEEEEEEE
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccc---------CCCCCeEEEEEEeCCCCcEEEEEEEE
Confidence            35788898865    389999999885   99864  5 565410         0246799999999988 79999997 


Q ss_pred             C-C--eeecCCCCCcccC
Q 015154          387 D-G--QWKVDPQRESVTK  401 (412)
Q Consensus       387 D-G--eW~~DPd~PtVtD  401 (412)
                      | +  .|...++.-....
T Consensus       656 ~~~~~~WE~g~Nr~~~~~  673 (686)
T 1d3c_A          656 QGSTVTWEGGSNHTFTAP  673 (686)
T ss_dssp             ETTEEEECCSSCEEEECC
T ss_pred             cCCceEecCCCCeEEECC
Confidence            2 2  3776666554443

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=94.91  E-value=0.037  Score=58.74  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=42.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW  390 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~-----~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGeW  390 (412)
                      .|+|+..++ |+.|.|.+ |+.+.     ..++|.+.            ..|+|.+.+. +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~------------~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK------------TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE------------SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC------------CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            588875555 99999999 87544     24778763            5799999885 789987 999999854

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=93.97  E-value=0.067  Score=54.83  Aligned_cols=60  Identities=12%  Similarity=0.034  Sum_probs=43.1

Q ss_pred             ceEEEEE-EecCCceEEE-EeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC
Q 015154          320 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  387 (412)
Q Consensus       320 L~~VTFt-W~g~AkeV~L-aGSFNNW~~----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVD  387 (412)
                      ...++|+ |...++.|.| .|.|++|+.    .++|.+..        .+...|+|++.+......+.|||.|.
T Consensus        22 ~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           22 QLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAG--------SDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             EEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEE--------ECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEee--------cCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            3455554 4456999999 899999964    47888641        01124579999998777889999885

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=93.27  E-value=0.16  Score=53.79  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC--Cee--ecCC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD--GQW--KVDP  394 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD--GeW--~~DP  394 (412)
                      .|+|+..++ |+.|.|.+.|++|.. .++|.+.            ..|+|++.+. +.+|. .|+|.|+  |.|  ..||
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~------------~~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DP  180 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL------------EKGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQ  180 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEEC------------GGGEEEEEEESCCTTC-EEEEEEEETTEEEEECCT
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccC------------CCCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCC
Confidence            588976555 999999999998864 4789874            4689999887 55673 4666664  764  5688


Q ss_pred             CCCccc
Q 015154          395 QRESVT  400 (412)
Q Consensus       395 d~PtVt  400 (412)
                      -...+.
T Consensus       181 ya~~~~  186 (718)
T 2e8y_A          181 YAKAVT  186 (718)
T ss_dssp             TCSSBC
T ss_pred             cccccc
Confidence            766543

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=92.74  E-value=0.1  Score=58.49  Aligned_cols=67  Identities=18%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             EEEEEEecC-CceEEEEe-eeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEEC------Ce--
Q 015154          322 VVEIQYSGD-GEIVEVAG-SFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ--  389 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaG-SFNNW~~-~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVD------Ge--  389 (412)
                      .|+|+..++ |+.|.|.+ .|++|.. .++|.+.           ...|+|++.+. +.+|.| |+|.|+      |.  
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-----------~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~  372 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE  372 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeEC-----------CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccc
Confidence            588986555 99999999 8899975 4788753           25689999885 788865 778775      43  


Q ss_pred             --eecCCCCCccc
Q 015154          390 --WKVDPQRESVT  400 (412)
Q Consensus       390 --W~~DPd~PtVt  400 (412)
                        ...||-...+.
T Consensus       373 ~~~~~DPYa~~~~  385 (1083)
T 2fhf_A          373 QYEVTDPYAHSLS  385 (1083)
T ss_dssp             EEEECCTTCSCBC
T ss_pred             cceecCCccceec
Confidence              46787765543

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=92.55  E-value=0.092  Score=53.88  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CceEEEEE-EecCCceEEE-EeeeCCCcc------ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC
Q 015154          319 GLEVVEIQ-YSGDGEIVEV-AGSFNGWHH------RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  387 (412)
Q Consensus       319 gL~~VTFt-W~g~AkeV~L-aGSFNNW~~------~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVD  387 (412)
                      ....++|+ |...++.|.| .|.|++|+.      .++|.+..+        +...|.|++.+......+.|+|.|+
T Consensus        21 ~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~--------~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           21 ETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGS--------DELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEE--------CSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeec--------CCCeEEEEEEEECCCcEEEEEEEEE
Confidence            34566675 4456999999 799999964      478986410        1124579999988777788999885

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=91.47  E-value=0.035  Score=56.18  Aligned_cols=70  Identities=20%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             ceEEEEEE-ec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE-C-
Q 015154          320 LEVVEIQY-SG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV-D-  387 (412)
Q Consensus       320 L~~VTFtW-~g---~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV-D-  387 (412)
                      .+.|+|+. ..   .|+.|+|+|+-.   +|++  .++|...           .....|++++.||+| .+||||+| | 
T Consensus       430 ~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-----------~~~~~W~~~v~lp~~~~~eyKy~~~~~  498 (527)
T 1gcy_A          430 LVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-----------SGYPTWKGSIALPAGQNEEWKCLIRNE  498 (527)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-----------CCCCeEEEEEEeCCCCcEEEEEEEEeC
Confidence            35677775 33   389999999885   8987  4678631           145789999999999 69999996 3 


Q ss_pred             -C-----eeecCCCCCccc
Q 015154          388 -G-----QWKVDPQRESVT  400 (412)
Q Consensus       388 -G-----eW~~DPd~PtVt  400 (412)
                       |     +|...|+.-...
T Consensus       499 ~~~~~~~~We~g~nr~~~~  517 (527)
T 1gcy_A          499 ANATQVRQWQGGANNSLTP  517 (527)
T ss_dssp             -------------------
T ss_pred             CCCcceeEecCCCCeeEEC
Confidence             3     377666665443

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=91.43  E-value=0.22  Score=54.51  Aligned_cols=63  Identities=16%  Similarity=0.243  Sum_probs=45.7

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCc----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEE--CCe--ee
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWH----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV--DGQ--WK  391 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~----~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIV--DGe--W~  391 (412)
                      .|+|+..++ |+.|.|.+ |++|.    ..++|.+.            ..|+|++.+. +.+|.+ |+|.|  +|.  ..
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~g~~-Y~y~v~~~g~~~~~  391 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKS------------DNGTWKLQVSGNLENWY-YLYQVTVNGTTQTA  391 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEEC------------GGGEEEEEEESCCTTCE-EEEEEECSSCEEEE
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeC------------CCCEEEEEEccCCCCCE-EEEEEEeCCeEEEe
Confidence            588876665 99999997 99994    35789874            4689999886 567753 66666  565  45


Q ss_pred             cCCCCCc
Q 015154          392 VDPQRES  398 (412)
Q Consensus       392 ~DPd~Pt  398 (412)
                      .||-...
T Consensus       392 ~DPya~~  398 (921)
T 2wan_A          392 VDPYARA  398 (921)
T ss_dssp             CCTTCSS
T ss_pred             cCCccee
Confidence            6876554

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=91.12  E-value=0.32  Score=50.89  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=46.5

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeeEEEEEEEC-CeeecCCCCCc
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVD-GQWKVDPQRES  398 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL-~LPPG~YEYKFIVD-GeW~~DPd~Pt  398 (412)
                      .|+|+..++ |+.|.|.+   +|. .++|.+.            ..|.|.+.+ .+.+|. .|+|.|+ |....||-...
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~------------~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~  105 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGK-DQEMQAN------------GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRA  105 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTE-EEECEEC------------STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSC
T ss_pred             cEEEEEECCCCCEEEEEE---CCC-cccCeec------------CCEEEEEEeCCCCCCC-EEEEEEeCCeEecccccee
Confidence            578976655 99999998   354 4789874            568999887 477886 5889995 56888987665


Q ss_pred             cc
Q 015154          399 VT  400 (412)
Q Consensus       399 Vt  400 (412)
                      ..
T Consensus       106 ~~  107 (618)
T 3m07_A          106 QK  107 (618)
T ss_dssp             BS
T ss_pred             ee
Confidence            43

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=90.81  E-value=0.12  Score=56.55  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             EEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCee-----EEEEEEECC--e-
Q 015154          323 VEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGT-----YEIKFIVDG--Q-  389 (412)
Q Consensus       323 VTFtW~g~-AkeV~LaG-SFNNW~~---~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~-----YEYKFIVDG--e-  389 (412)
                      |.|+..++ |+.|.|.+ .+++|..   .++|.+.            ..|+|++.+.+.||.     +.|+|.|++  . 
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~  213 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN------------NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDK  213 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC------------TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC------------CCCEEEEEECCCCCCccCCCeEEEEEEeeCCce
Confidence            88986555 99999998 6778853   5789763            679999999776662     678888863  3 


Q ss_pred             -eecCCCCCcc
Q 015154          390 -WKVDPQRESV  399 (412)
Q Consensus       390 -W~~DPd~PtV  399 (412)
                       ...||-...+
T Consensus       214 ~~~~DPYA~~~  224 (877)
T 3faw_A          214 VKILDPYAKSL  224 (877)
T ss_dssp             EEECCTTCSCB
T ss_pred             eEecCccceec
Confidence             5668876543

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=90.72  E-value=0.18  Score=52.81  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=38.3

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcccc--ccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRI--KMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG  388 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~I--pM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDG  388 (412)
                      -|+|+..++ |+.|.|.+-+++|....  .|.+            ...|+|++.+. +.+|.| |+|.|+|
T Consensus       137 g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~------------~~~g~W~~~~~~~~~g~~-Y~y~v~~  194 (884)
T 4aio_A          137 SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLK------------ESNGVWSVTGPREWENRY-YLYEVDV  194 (884)
T ss_dssp             EEEEEEECTTCSEEEEEEESTTTSCEEEEEECE------------EETTEEEEEEEGGGTTCE-EEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeec------------CCCCEEEEEECCCCCCCE-EEEEEeC
Confidence            489985555 99999999555565432  2322            35799999986 667754 8888875

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=90.54  E-value=0.26  Score=52.05  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             EEEEEEecC-CceEEEEe-eeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEe--CCe-----eEEEEEEEC--
Q 015154          322 VVEIQYSGD-GEIVEVAG-SFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWL--YPG-----TYEIKFIVD--  387 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaG-SFNNW~~---~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~L--PPG-----~YEYKFIVD--  387 (412)
                      .|.|+..++ |+.|.|.+ .|++|..   .++|.+.            ..|+|++.+.-  .+|     -+.|+|.|+  
T Consensus        25 gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~------------~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~   92 (714)
T 2ya0_A           25 QVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG------------ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQ   92 (714)
T ss_dssp             EEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC------------GGGEEEEEECTTCSSSCSCCTTCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC------------CCCEEEEEECCccCCCccccCCcEEEEEEEeC
Confidence            388975555 99999999 7888864   5788763            56899998863  134     267888886  


Q ss_pred             Ce--eecCCCCCc
Q 015154          388 GQ--WKVDPQRES  398 (412)
Q Consensus       388 Ge--W~~DPd~Pt  398 (412)
                      |.  -..||-...
T Consensus        93 ~~~~~~~DPya~~  105 (714)
T 2ya0_A           93 GKTVLALDPYAKS  105 (714)
T ss_dssp             TEEEEECCTTCSE
T ss_pred             CceEEecCCceee
Confidence            64  357886543

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=87.21  E-value=0.64  Score=50.94  Aligned_cols=51  Identities=22%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             cCCceEEEEeee-------CCCcccc---ccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeee
Q 015154          329 GDGEIVEVAGSF-------NGWHHRI---KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK  391 (412)
Q Consensus       329 g~AkeV~LaGSF-------NNW~~~I---pM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~  391 (412)
                      ..+..+.+.|+|       .+|.+.-   -|..            ..+|.|+.+-.||+|.||||+.++|.|.
T Consensus       161 ~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~------------~~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          161 ANPVTAVLVGDLQQALGAANNWSPDDDHTLLKK------------INPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             CCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEE------------EETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             ccccccccccchhhhccccccCCCCCCcceeec------------cCCcceeeeeccCCcceeEEEeecCccc
Confidence            345678888876       4676532   1322            2468999999999999999999998884

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=85.96  E-value=0.18  Score=51.72  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=42.0

Q ss_pred             ceEEEEE-EecCCceEEE-EeeeCCCcc---ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEEC
Q 015154          320 LEVVEIQ-YSGDGEIVEV-AGSFNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVD  387 (412)
Q Consensus       320 L~~VTFt-W~g~AkeV~L-aGSFNNW~~---~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVD  387 (412)
                      ...++|+ |...++.|.| .|.|++|..   .++|.+..        .+...|.|++.+......+.|||.|.
T Consensus        22 ~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~--------~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           22 TVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLA--------TDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             CEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEE--------ECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             EEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEe--------ccCCeEEEEEEEECCCceEEEEEEEE
Confidence            3455564 4445999999 799999965   47898741        01124579999987777778888773

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=85.15  E-value=0.41  Score=49.58  Aligned_cols=60  Identities=10%  Similarity=0.108  Sum_probs=40.7

Q ss_pred             eEEEEEEe----cC-CceEEEEeeeCCCccccccCC--CCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECC
Q 015154          321 EVVEIQYS----GD-GEIVEVAGSFNGWHHRIKMDP--LPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDG  388 (412)
Q Consensus       321 ~~VTFtW~----g~-AkeV~LaGSFNNW~~~IpM~k--d~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDG  388 (412)
                      ..|+|+..    ++ ++.|.|.+.|++=...++|.+  ..        .+...|+|++.+........|+|.|+|
T Consensus        30 ~~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~--------~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           30 QSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSND--------PTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEEC--------TTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             CEEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeecc--------ccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            35777644    44 899999999875112478876  21        012347999999866566679999975

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=81.78  E-value=0.9  Score=41.26  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             CCceEEEEeeeCCCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeee
Q 015154          330 DGEIVEVAGSFNGWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK  391 (412)
Q Consensus       330 ~AkeV~LaGSFNNW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~  391 (412)
                      ..+++||+|++++|.-  ..+|.+..          ...|.|..++.|+-|. +|||.-+..|-
T Consensus        11 ~p~~lY~vG~~~gW~~~~~~~m~~~~----------~~~g~y~~~~yl~ag~-~fKf~~~~~~~   63 (221)
T 4fch_A           11 PPKTMFIVGSMLDTDWKVWKPMAGVY----------GMDGQFYSMIYFDANS-EFKFGTKENEY   63 (221)
T ss_dssp             CCSCCEEEETTTCTTSCCEEECEECT----------TCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred             CcceEEEEecCCCCCCCccceeeecc----------CCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence            3788999999998853  36776642          3578999999998764 89999876553

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=80.70  E-value=2.9  Score=35.03  Aligned_cols=65  Identities=17%  Similarity=0.292  Sum_probs=47.3

Q ss_pred             eEEEEEEecCCceEEEEeeeC--CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEECC--eeecC
Q 015154          321 EVVEIQYSGDGEIVEVAGSFN--GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDG--QWKVD  393 (412)
Q Consensus       321 ~~VTFtW~g~AkeV~LaGSFN--NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIVDG--eW~~D  393 (412)
                      ..|++.|..+...|+|-=.+.  +|..  .++|.+.           .-.|.|..++.|+.+ .++|.| -||  .|-.+
T Consensus        10 ~~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-----------~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN   77 (102)
T 2c3v_A           10 TDITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-----------EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNN   77 (102)
T ss_dssp             CSEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-----------SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECG
T ss_pred             CEEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-----------ccCCceEEEEecCCCceEEEEE-eCCCcccccC
Confidence            457788877789998886675  4876  3779763           136788999999975 899999 665  59765


Q ss_pred             CCCC
Q 015154          394 PQRE  397 (412)
Q Consensus       394 Pd~P  397 (412)
                      ....
T Consensus        78 ~g~N   81 (102)
T 2c3v_A           78 QGRD   81 (102)
T ss_dssp             GGTC
T ss_pred             CCcc
Confidence            5444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	6e-18
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-15

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 6e-18
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 323 VEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEI 382
              +++G G+ V ++GSFN W               +   +R    +  +L L  G ++ 
Sbjct: 4   TVFRWTGGGKEVYLSGSFNNWS--------------KLPMTRSQNNFVAILDLPEGEHQY 49

Query: 383 KFIVDGQWKVDPQRESVTKG-GICNNILRV 411
           KF VDGQW  DP    VT   G  NNI++V
Sbjct: 50  KFFVDGQWTHDPSEPIVTSQLGTVNNIIQV 79

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 69.0 bits (168), Expect = 2e-15
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 318 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP 377
           S +  VEI++   G  V V GSF  W   I + P   ++            +   L L P
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGS----------FHVKLRLLP 50

Query: 378 GTYEIKFIVDGQWKVDPQRESVTKG-GICNNILRV 411
           GT+  +FIVD + +V     + T   G   N + V
Sbjct: 51  GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEV 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.93
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.91
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.24
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.2
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.84
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.74
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.73
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.68
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.42
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.16
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	95.04
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	94.19

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=1.7e-26  Score=183.74  Aligned_cols=85  Identities=32%  Similarity=0.441  Sum_probs=76.5

Q ss_pred             CCceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCC
Q 015154          318 SGLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRE  397 (412)
Q Consensus       318 sgL~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~P  397 (412)
                      +.++||+|+|+++|++|+|+|+||+|++.++|.+..          ..+|.|.+++.|+||.|+|||+|||+|++||++|
T Consensus         1 s~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~----------~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p   70 (87)
T d2qlvb1           1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDS----------DNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLP   70 (87)
T ss_dssp             CCCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECS----------SSTTCEEEEEEECSEEEEEEEEETTEEECCTTSC
T ss_pred             CeEEEEEEEECCCCeEEEEEEEecCcCccccccccc----------CCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCC
Confidence            357899999999999999999999999877765532          3578999999999999999999999999999999


Q ss_pred             cccC-CCccceEEEeC
Q 015154          398 SVTK-GGICNNILRVI  412 (412)
Q Consensus       398 tVtD-~G~vNNVL~V~  412 (412)
                      ++.+ .|+.||+|.|.
T Consensus        71 ~~~d~~G~~nnvi~V~   86 (87)
T d2qlvb1          71 TATDQMGNFVNYIEVR   86 (87)
T ss_dssp             EEBCSSCCCEEEEEEC
T ss_pred             eeECCCCCEeEEEEEE
Confidence            9887 69999999985

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.91  E-value=2.3e-25  Score=178.18  Aligned_cols=78  Identities=36%  Similarity=0.621  Sum_probs=72.0

Q ss_pred             eEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCccc
Q 015154          321 EVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  400 (412)
Q Consensus       321 ~~VTFtW~g~AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtVt  400 (412)
                      +||+|+|+++|++|+|+||||+|++ .+|.+             .+|.|++++.||||.|+|||+|||+|++||+.|++.
T Consensus         2 ~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~-------------~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~   67 (87)
T d1z0na1           2 RPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR-------------SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVT   67 (87)
T ss_dssp             EEEEEEECSCCSCEEEEEGGGTTCC-EECEE-------------ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEE
T ss_pred             CCEEEEEcCCCEEEEEEEEeCCCCc-ccccc-------------CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeE
Confidence            6999999999999999999999985 66754             578999999999999999999999999999999988


Q ss_pred             C-CCccceEEEeC
Q 015154          401 K-GGICNNILRVI  412 (412)
Q Consensus       401 D-~G~vNNVL~V~  412 (412)
                      + .|+.||+|.|+
T Consensus        68 d~~G~~Nnvi~V~   80 (87)
T d1z0na1          68 SQLGTVNNIIQVK   80 (87)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEEEC
Confidence            7 69999999985

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.24  E-value=3.8e-07  Score=73.36  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEECCeeecCCCCCccc
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESVT  400 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIVDGeW~~DPd~PtVt  400 (412)
                      .|+|+..++ |++|.|.+.++    .++|.++            ..|.|.+++.+.+|.+ |+|.|||.|+.||......
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~----~~~m~~~------------~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~   84 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGT----EHVMTSL------------GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   84 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTE----EEECEEE------------ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEeEEEeeCC----ccCCEEc------------cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCC
Confidence            589987666 99999999643    3689874            6799999999999986 9999999999999875543

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.8e-06  Score=69.94  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEeCCeeEEEEEEE---CCeee--cC
Q 015154          321 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV---DGQWK--VD  393 (412)
Q Consensus       321 ~~VTFtW~g~-AkeV~LaGSFNNW~~~-IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG~YEYKFIV---DGeW~--~D  393 (412)
                      .-|+|+..++ |+.|+|.|+||+|... .+|.+.           ...|.|++.+.....-..|||.|   ||+|.  .|
T Consensus        20 ~Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-----------~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~D   88 (110)
T d1m7xa1          20 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-----------KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSD   88 (110)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-----------TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECC
T ss_pred             ceEEEEEECCCCCEEEEEEECCCCCCceEEeEEe-----------cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcC
Confidence            4588975555 9999999999999754 577653           36789999998665566788877   78866  47


Q ss_pred             CCCCcc
Q 015154          394 PQRESV  399 (412)
Q Consensus       394 Pd~PtV  399 (412)
                      |-.-..
T Consensus        89 PYA~~~   94 (110)
T d1m7xa1          89 PYAFEA   94 (110)
T ss_dssp             TTCSSE
T ss_pred             hhhccc
Confidence            776543

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.84  E-value=7e-05  Score=60.27  Aligned_cols=74  Identities=19%  Similarity=0.397  Sum_probs=50.4

Q ss_pred             eEEEEEEec-----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 015154          321 EVVEIQYSG-----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  386 (412)
Q Consensus       321 ~~VTFtW~g-----~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---  386 (412)
                      ..|+|++..     .|+.|+|+|+..   +|++.  ++|....     ...-....+.|++++.||+| .+||||+|   
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~-----~~~~~~~~~~W~~~v~lp~~~~~eYKyvi~~~   80 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQ-----GPLLAPNYPDWFYVFSVPAGKTIQFKFFIKRA   80 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCB-----CCCBCTTTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhcccccccc-----CccccccCCeEEEEEEECCCCEEEEEEEEEcC
Confidence            578888754     389999999975   89874  5676421     00011245689999999999 69999986   


Q ss_pred             CCe--eecCCCCCcc
Q 015154          387 DGQ--WKVDPQRESV  399 (412)
Q Consensus       387 DGe--W~~DPd~PtV  399 (412)
                      ||.  |.-.|+.-..
T Consensus        81 ~g~~~WE~g~NR~~~   95 (110)
T d1qhoa2          81 DGTIQWENGSNHVAT   95 (110)
T ss_dssp             TSCEEECCSSCEEEE
T ss_pred             CCCEEEcCCCCEEEE
Confidence            453  6655544433

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.74  E-value=9.4e-05  Score=59.24  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=52.0

Q ss_pred             ceEEEEEEec----CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEEC--
Q 015154          320 LEVVEIQYSG----DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVD--  387 (412)
Q Consensus       320 L~~VTFtW~g----~AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIVD--  387 (412)
                      .+.|+|....    .|+.|+|+|+..   +|++  .++|....        .....+.|++++.||+| .+||||++.  
T Consensus         5 ~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKyv~~~~   76 (105)
T d3bmva2           5 QICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQ--------VVYQYPTWYYDVSVPAGTTIQFKFIKKNG   76 (105)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCS--------SSSCTTSEEEEEEEETTCEEEEEEEEESS
T ss_pred             EEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCccccccc--------ccCCCCeEEEEEEECCCCeEEEEEEEEcC
Confidence            4788998763    389999999964   9975  36787531        11245789999999999 599999983  


Q ss_pred             C--eeecCCCCCcc
Q 015154          388 G--QWKVDPQRESV  399 (412)
Q Consensus       388 G--eW~~DPd~PtV  399 (412)
                      |  .|...|+.-..
T Consensus        77 ~~~~WE~g~NR~~~   90 (105)
T d3bmva2          77 NTITWEGGSNHTYT   90 (105)
T ss_dssp             SCCEECCSSCEEEE
T ss_pred             CeEEEcCCCCEEEE
Confidence            3  37766655443

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.73  E-value=2.4e-05  Score=62.81  Aligned_cols=74  Identities=28%  Similarity=0.548  Sum_probs=53.9

Q ss_pred             CceEEEEEEecC---CceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---
Q 015154          319 GLEVVEIQYSGD---GEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---  386 (412)
Q Consensus       319 gL~~VTFtW~g~---AkeV~LaGSFN---NW~~--~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---  386 (412)
                      ..+.|+|.....   |+.|+|+|+..   +|+.  .++|....        .....+.|...+.||+| .+||||+|   
T Consensus         5 ~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~--------~~~~~~~w~~~v~~~~~~~~eYKyvi~~~   76 (108)
T d1kula_           5 TAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADK--------YTSSDPLWYVTVTLPAGESFEYKFIRIES   76 (108)
T ss_dssp             TCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTT--------CSSSSCCCBCEECCCSCCEECCEEEEECS
T ss_pred             CEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEcc--------ccCCCCCEEEEEEeCCCCeEEEEEEEECC
Confidence            456788887653   89999999974   9976  36786531        01245689999999999 69999998   


Q ss_pred             CCe--eecCCCCCccc
Q 015154          387 DGQ--WKVDPQRESVT  400 (412)
Q Consensus       387 DGe--W~~DPd~PtVt  400 (412)
                      ||.  |...++.-...
T Consensus        77 ~g~~~WE~g~NR~~~~   92 (108)
T d1kula_          77 DDSVEWESDPNREYTV   92 (108)
T ss_dssp             SSCEEECCSSCCCEEC
T ss_pred             CCCEEEccCCCEEEEe
Confidence            463  77766655444

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=0.00014  Score=58.14  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=53.6

Q ss_pred             CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE--
Q 015154          319 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--  386 (412)
Q Consensus       319 gL~~VTFtW~g----~AkeV~LaGSF---NNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV--  386 (412)
                      ..++|+|....    .|+.|+|+|+.   .+|+..  ++|.....        ....+.|.+++.+|.| .++|||+|  
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~--------~~~~~~w~~~v~~~~~~~~eYKyvi~~   75 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQV--------VYSYPTWYIDVSVPEGKTIEFKFIKKD   75 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSS--------SSCTTCEEEEEEEESSCEEEEEEEEEC
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccC--------cCCCCeEEEEEEeCCCCeEEEEEEEEc
Confidence            45789998853    48999999996   699754  67875311        1235679999999999 79999998  


Q ss_pred             -CCe--eecCCCCCccc
Q 015154          387 -DGQ--WKVDPQRESVT  400 (412)
Q Consensus       387 -DGe--W~~DPd~PtVt  400 (412)
                       ||.  |...|+.-...
T Consensus        76 ~~g~~~WE~g~NR~~~~   92 (106)
T d1cyga2          76 SQGNVTWESGSNHVYTT   92 (106)
T ss_dssp             TTSCEEECCSSCEEEEC
T ss_pred             CCCCEEEcCCCCEEEEe
Confidence             564  76666554433

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.42  E-value=1.6e-05  Score=62.56  Aligned_cols=61  Identities=15%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe-eecCCCCCc
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-WKVDPQRES  398 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe-W~~DPd~Pt  398 (412)
                      .|+|+..++ |+.|.|.|.+.+|   ++|.++            ..|.|++++. +.+| +.|+|.|||. .+.||-...
T Consensus        10 gv~FrvwAP~A~~V~l~~~~~~~---~~m~~~------------~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          10 EVIFTLWAPYQKSVKLKVLEKGL---YEMERD------------EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             CEECCEECTTCSCCBCCCSSSCC---CCCCCC------------TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             CEEEEEECCCCCEEEEEeecCCc---ccceeC------------CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            378987776 9999999865443   688874            6899999984 8888 5699999875 677887654

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.16  E-value=0.00046  Score=54.72  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=47.7

Q ss_pred             eEEEEEEec----CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-eEEEEEEE---C
Q 015154          321 EVVEIQYSG----DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D  387 (412)
Q Consensus       321 ~~VTFtW~g----~AkeV~LaGSFN---NW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~LPPG-~YEYKFIV---D  387 (412)
                      +.++|...+    .|+.|+|+|+..   +|+..  +.|...          ....+.|++.+.||+| .+||||+|   |
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~----------~~~~~~W~~~v~lp~~~~~eYKyvi~~~~   72 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYY----------DSHSNDWRGNVVLPAERNIEFKAFIKSKD   72 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEE----------ETTTTEEEEEEEEETTCCEEEEEEEECTT
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeec----------cCCCCCEEEEEEEcCCCcEEEEEEEEeCC
Confidence            345665543    399999999986   99863  222111          1245689999999999 69999998   5


Q ss_pred             Ce---eecCCCCCcccC
Q 015154          388 GQ---WKVDPQRESVTK  401 (412)
Q Consensus       388 Ge---W~~DPd~PtVtD  401 (412)
                      |.   |...++.-...+
T Consensus        73 g~~~~WE~g~Nr~~~~p   89 (99)
T d1vema1          73 GTVKSWQTIQQSWNPVP   89 (99)
T ss_dssp             SCEEEECSSCEEESSCC
T ss_pred             CCEEEecCCCCEEEECC
Confidence            63   666555444433

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.04  E-value=0.014  Score=46.49  Aligned_cols=70  Identities=16%  Similarity=0.054  Sum_probs=44.8

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEE-eCCeeEEEEEEECCe--------
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ--------  389 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~~--IpM~kd~ss~~~a~~~sk~~G~Fs~tL~-LPPG~YEYKFIVDGe--------  389 (412)
                      .|.|+..++ |+.|.|.--..++...  ..|..+           ...|+|++.+. +.+|.+ |+|.|+|.        
T Consensus        18 g~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-----------~~~GvW~~~i~~~~~G~~-Y~y~v~~~~~~~~~~~   85 (115)
T d2fhfa1          18 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-----------SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVE   85 (115)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-----------TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEEECCCCCccceeeeeEc-----------CCCCEEEEEECCCCCCCE-EEEEEEcccccccCCc
Confidence            488986666 9999998444433321  234332           35789999985 788975 77777653        


Q ss_pred             --eecCCCCCcccCCC
Q 015154          390 --WKVDPQRESVTKGG  403 (412)
Q Consensus       390 --W~~DPd~PtVtD~G  403 (412)
                        ...||-..-+..+|
T Consensus        86 ~~~~~DPYA~a~~~~~  101 (115)
T d2fhfa1          86 QYEVTDPYAHSLSTNS  101 (115)
T ss_dssp             EEEECCTTCSCBCGGG
T ss_pred             ceEecceeeEEEccCC
Confidence              34577766554333

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=94.19  E-value=0.032  Score=46.70  Aligned_cols=57  Identities=11%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE--------eCCeeEEEEEEECC
Q 015154          322 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW--------LYPGTYEIKFIVDG  388 (412)
Q Consensus       322 ~VTFtW~g~-AkeV~LaGSFNNW~~----~IpM~kd~ss~~~a~~~sk~~G~Fs~tL~--------LPPG~YEYKFIVDG  388 (412)
                      .|+|+..++ |+.|.|.--.++|..    .++|.+            ...|+|.+.+.        +.+|.| |.|.|||
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~------------~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~G   83 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP------------AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWG   83 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE------------CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEB
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc------------ccccEEEEEecccccccccCCCCcE-EEEEEcc
Confidence            478975555 999999986666653    255665            36799999986        778865 7889998


Q ss_pred             eee
Q 015154          389 QWK  391 (412)
Q Consensus       389 eW~  391 (412)
                      -|.
T Consensus        84 p~~   86 (162)
T d1bf2a1          84 PNW   86 (162)
T ss_dssp             TTB
T ss_pred             ccC
Confidence            653