Citrus Sinensis ID: 015159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcc
mesrvlsrattttttisslrrsplenhqnvsfislkpigavgeggnviwgrqlrpalllessnapaglfagkkEILRPilatasspaegsdsageaapvrffdrypalvTGFFFFMWYFLNVIFNILNkriynyfpyPYFVSVIHLLVGVVYCLVSWAvglpkrapidskLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYskkamtdmdstNIYAYISIIALFvcippaiivegpqlIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFgnkistqtgIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
mesrvlsrattttttisslrrsplenhqnvsFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATasspaegsdsaGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
MESRVLSRAttttttISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQtgigtviaiagvaaYSYIKAQMEEEKRQMKAA
*****************************VSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPIL*****************PVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK*************
**********************************************************************************************************ALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS****************
****************SSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILAT*************AAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM**********
***************************************************************************************************RFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q9ZSR7410 Triose phosphate/phosphat yes no 0.983 0.987 0.788 0.0
P21727402 Triose phosphate/phosphat N/A no 0.966 0.990 0.788 0.0
P49131408 Triose phosphate/phosphat N/A no 0.985 0.995 0.765 0.0
P11869404 Triose phosphate/phosphat N/A no 0.968 0.987 0.763 0.0
P49132407 Triose phosphate/phosphat N/A no 0.983 0.995 0.753 1e-179
P52177407 Triose phosphate/phosphat N/A no 0.970 0.982 0.773 1e-177
Q9FTT3417 Triose phosphate/phosphat yes no 0.873 0.863 0.776 1e-169
P29463414 Triose phosphate/phosphat N/A no 0.975 0.971 0.726 1e-169
P49133409 Triose phosphate/phosphat N/A no 0.898 0.904 0.767 1e-160
Q9M5A9388 Glucose-6-phosphate/phosp no no 0.699 0.742 0.437 2e-62
>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=2 SV=1 Back     alignment and function desciption
 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/417 (78%), Positives = 358/417 (85%), Gaps = 12/417 (2%)

Query: 1   MESRVLSRATTTTTTISSLRRSPLENHQNVSFIS-----LKPIGAVGEGGNVIWGRQLRP 55
           MESRVL RAT     I  LRR     H+  S  S     +KPIG +GEG N+I GRQLRP
Sbjct: 1   MESRVLLRATANVVGIPKLRRPIGAIHRQFSTASSSSFSVKPIGGIGEGANLISGRQLRP 60

Query: 56  ALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFF 115
            LLL+SS    G    K+EIL+P+ A A   AEG D+AG+A  V F  +YP LVTGFFFF
Sbjct: 61  ILLLDSSAINGG---EKREILKPVKAAA---AEGGDTAGDAK-VGFLAKYPWLVTGFFFF 113

Query: 116 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 175
           MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL+SW+VGLPKRAPIDS LLK+L
Sbjct: 114 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVL 173

Query: 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPV 235
           IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFI+GQ +P+TLWLSLAPV
Sbjct: 174 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWLSLAPV 233

Query: 236 VIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVC 295
           V+GV+MASLTELSFNW GFISAMISNISFTYRSI+SKKAMTDMDSTN+YAYISIIALFVC
Sbjct: 234 VLGVAMASLTELSFNWLGFISAMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVC 293

Query: 296 IPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHA 355
           IPPAIIVEGP+L+ HG +DAI+KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHA
Sbjct: 294 IPPAIIVEGPKLLNHGFADAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHA 353

Query: 356 VGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA 412
           VGNVLKRVFVIGFSI+ FGNKISTQTGIGT IAIAGVA YS IKA++EEEKRQ K A
Sbjct: 354 VGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVAMYSIIKAKIEEEKRQGKKA 410
Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light.
Arabidopsis thaliana (taxid: 3702)
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P49131|TPT_FLAPR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|P49132|TPT_FLATR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P52177|TPT1_BRAOB Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|Q9FTT3|TPT_ORYSJ Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P29463|TPT_SOLTU Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P49133|TPT_MAIZE Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1 Back     alignment and function description
>sp|Q9M5A9|GPT1_ARATH Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
255536723406 Triose phosphate/phosphate translocator, 0.983 0.997 0.845 0.0
224077056408 predicted protein [Populus trichocarpa] 0.980 0.990 0.836 0.0
224125582408 predicted protein [Populus trichocarpa] 0.985 0.995 0.838 0.0
225443598406 PREDICTED: triose phosphate/phosphate tr 0.983 0.997 0.837 0.0
147834373443 hypothetical protein VITISV_028555 [Viti 0.970 0.902 0.840 0.0
356521410429 PREDICTED: LOW QUALITY PROTEIN: triose p 0.980 0.941 0.806 0.0
356548666406 PREDICTED: triose phosphate/phosphate tr 0.975 0.990 0.814 0.0
449433798411 PREDICTED: triose phosphate/phosphate tr 0.983 0.985 0.796 0.0
9295273404 triose phosphate/phosphate translocator 0.963 0.982 0.785 0.0
21593093410 phosphate/triose-phosphate translocator 0.983 0.987 0.791 0.0
>gi|255536723|ref|XP_002509428.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] gi|223549327|gb|EEF50815.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/413 (84%), Positives = 376/413 (91%), Gaps = 8/413 (1%)

Query: 1   MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLE 60
           MESRVLSRATTT +++  LRR P+      SF+S+KPIG VGEGGN+IWGRQLRP+LLLE
Sbjct: 1   MESRVLSRATTTLSSLPHLRR-PMRESNTTSFVSMKPIGTVGEGGNLIWGRQLRPSLLLE 59

Query: 61  SSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE-AAPVRFFDRYPALVTGFFFFMWYF 119
           SS A       K+E LRP +A ASSPAEGSDS+G+  APV FF++YPALVTGFFFFMWYF
Sbjct: 60  SSPAT------KRENLRPTMAAASSPAEGSDSSGDKVAPVGFFEKYPALVTGFFFFMWYF 113

Query: 120 LNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVA 179
           LNVIFNILNK+IYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDS LLKLLIPVA
Sbjct: 114 LNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSNLLKLLIPVA 173

Query: 180 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGV 239
           VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQ +P+TLWLSLAPVVIGV
Sbjct: 174 VCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGV 233

Query: 240 SMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA 299
           SMASLTELSFNW GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA
Sbjct: 234 SMASLTELSFNWIGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA 293

Query: 300 IIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV 359
           II EGPQL+K+G +DAI+KVG  KFI+DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV
Sbjct: 294 IIFEGPQLMKYGFNDAIAKVGTTKFITDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNV 353

Query: 360 LKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA 412
           LKRVFVIGFSI+ FGNKISTQTGIGT IAIAGVA YS++KA++EEEKRQ K A
Sbjct: 354 LKRVFVIGFSIVVFGNKISTQTGIGTCIAIAGVAMYSFLKAKIEEEKRQGKTA 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077056|ref|XP_002305112.1| predicted protein [Populus trichocarpa] gi|222848076|gb|EEE85623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125582|ref|XP_002329840.1| predicted protein [Populus trichocarpa] gi|222870902|gb|EEF08033.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443598|ref|XP_002278829.1| PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic [Vitis vinifera] gi|297740430|emb|CBI30612.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147834373|emb|CAN65381.1| hypothetical protein VITISV_028555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521410|ref|XP_003529349.1| PREDICTED: LOW QUALITY PROTEIN: triose phosphate/phosphate translocator, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356548666|ref|XP_003542721.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic [Glycine max] Back     alignment and taxonomy information
>gi|449433798|ref|XP_004134684.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|9295273|gb|AAF86906.1|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|21593093|gb|AAM65042.1| phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2161423415 APE2 "ACCLIMATION OF PHOTOSYNT 0.970 0.963 0.759 9.6e-160
TAIR|locus:2160175388 GPT1 "glucose 6-phosphate/phos 0.759 0.806 0.407 1.5e-60
TAIR|locus:2036778388 GPT2 "glucose-6-phosphate/phos 0.699 0.742 0.420 6.4e-60
TAIR|locus:2151381417 AT5G17630 "AT5G17630" [Arabido 0.832 0.822 0.378 1.2e-58
UNIPROTKB|Q84QU8407 PPT2 "Phosphoenolpyruvate/phos 0.699 0.707 0.402 3.8e-53
UNIPROTKB|Q69VR7408 PPT1 "Phosphoenolpyruvate/phos 0.742 0.75 0.368 4e-51
TAIR|locus:2084203383 PPT2 "phosphoenolpyruvate (pep 0.708 0.762 0.385 4.1e-49
TAIR|locus:2145944408 CUE1 "CAB UNDEREXPRESSED 1" [A 0.898 0.906 0.317 6.9e-47
UNIPROTKB|Q5VQL3393 PPT3 "Phosphoenolpyruvate/phos 0.851 0.893 0.336 2.1e-45
GENEDB_PFALCIPARUM|PFE0410w342 PFE0410w "triose or hexose pho 0.662 0.798 0.345 2e-40
TAIR|locus:2161423 APE2 "ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
 Identities = 313/412 (75%), Positives = 342/412 (83%)

Query:     1 MESRVLSRAXXXXXXISSLRRSPLENHQNVSF-----ISLKPIGAVGEGGNVIWGRQLRP 55
             MESRVL RA      I  LRR     H+  S       S+KPIG +GEG N+I GRQLRP
Sbjct:     1 MESRVLLRATANVVGIPKLRRPIGAIHRQFSTASSSSFSVKPIGGIGEGANLISGRQLRP 60

Query:    56 ALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFF 115
              LLL+SS    G    K+EIL+P+ A A   AEG D+AG+A  V F  +YP LVTGFFFF
Sbjct:    61 ILLLDSSAINGG---EKREILKPVKAAA---AEGGDTAGDAK-VGFLAKYPWLVTGFFFF 113

Query:   116 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 175
             MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL+SW+VGLPKRAPIDS LLK+L
Sbjct:   114 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVL 173

Query:   176 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPV 235
             IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFI+GQ +P+TLWLSLAPV
Sbjct:   174 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWLSLAPV 233

Query:   236 VIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVC 295
             V+GV+MASLTELSFNW GFISAMISNISFTYRSI+SKKAMTDMDSTN+YAYISIIALFVC
Sbjct:   234 VLGVAMASLTELSFNWLGFISAMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVC 293

Query:   296 IPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHA 355
             IPPAIIVEGP+L+ HG +DAI+KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHA
Sbjct:   294 IPPAIIVEGPKLLNHGFADAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHA 353

Query:   356 VGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKR 407
             VGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR
Sbjct:   354 VGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVAMYSIIKAKIEEEKR 405
GO:0005215 "transporter activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0015297 "antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA
GO:0015713 "phosphoglycerate transport" evidence=IDA
GO:0015717 "triose phosphate transport" evidence=IMP
GO:0035436 "triose phosphate transmembrane transport" evidence=IDA
GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IMP;IDA
GO:0009643 "photosynthetic acclimation" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
TAIR|locus:2160175 GPT1 "glucose 6-phosphate/phosphate translocator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036778 GPT2 "glucose-6-phosphate/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151381 AT5G17630 "AT5G17630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QU8 PPT2 "Phosphoenolpyruvate/phosphate translocator 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VR7 PPT1 "Phosphoenolpyruvate/phosphate translocator 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2084203 PPT2 "phosphoenolpyruvate (pep)/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145944 CUE1 "CAB UNDEREXPRESSED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VQL3 PPT3 "Phosphoenolpyruvate/phosphate translocator 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE0410w PFE0410w "triose or hexose phosphate / phosphate translocator, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11869TPT_SPIOLNo assigned EC number0.76380.96840.9876N/Ano
Q9ZSR7TPT_ARATHNo assigned EC number0.78890.98300.9878yesno
P29463TPT_SOLTUNo assigned EC number0.72640.97570.9710N/Ano
P52177TPT1_BRAOBNo assigned EC number0.77320.97080.9828N/Ano
P21727TPT_PEANo assigned EC number0.78840.96600.9900N/Ano
P49131TPT_FLAPRNo assigned EC number0.76570.98540.9950N/Ano
P49133TPT_MAIZENo assigned EC number0.76710.89800.9046N/Ano
P49132TPT_FLATRNo assigned EC number0.75360.98300.9950N/Ano
Q9FTT3TPT_ORYSJNo assigned EC number0.77650.87370.8633yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0046015202
hypothetical protein (408 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
TIGR00817302 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate 1e-148
PTZ00343350 PTZ00343, PTZ00343, triose or hexose phosphate/pho 1e-70
pfam03151149 pfam03151, TPT, Triose-phosphate Transporter famil 1e-34
COG0697292 COG0697, RhaT, Permeases of the drug/metabolite tr 3e-07
TIGR00950260 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran 3e-04
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
 Score =  422 bits (1087), Expect = e-148
 Identities = 182/302 (60%), Positives = 219/302 (72%), Gaps = 3/302 (0%)

Query: 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI 167
           L TG  F +WYFLNV FNI NK++ N FPYPYF ++I L VG +YCL+SW+ GLPKR  I
Sbjct: 1   LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI 60

Query: 168 DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLT 227
            S LLKLL+PVA+ H +GHVTSNVS + VAVSFTHTIKA+EPFF+   S F LGQ+ P T
Sbjct: 61  SSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST 120

Query: 228 LWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYA 285
           LWLSL P+V GV++AS TELSFNW GF+SAMISNI+F  R+I+SKKAMT   +D TN+YA
Sbjct: 121 LWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYA 180

Query: 286 YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATN 344
           YISI++LF+  PPA I EGP  + HG   AIS V + K  +      M F+H Y Q+A  
Sbjct: 181 YISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFM 240

Query: 345 TLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 404
            L RV+PLTH+VGN +KRV VI  SIL FG KIS Q   GT IAIAGV  YS +KAQ  +
Sbjct: 241 LLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300

Query: 405 EK 406
            K
Sbjct: 301 PK 302

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family Back     alignment and domain information
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 100.0
PTZ00343350 triose or hexose phosphate/phosphate translocator; 100.0
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 100.0
PLN00411358 nodulin MtN21 family protein; Provisional 99.97
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 99.97
PRK11689295 aromatic amino acid exporter; Provisional 99.96
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 99.96
PRK11272292 putative DMT superfamily transporter inner membran 99.95
KOG1443349 consensus Predicted integral membrane protein [Fun 99.94
PRK10532293 threonine and homoserine efflux system; Provisiona 99.94
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 99.94
KOG1581327 consensus UDP-galactose transporter related protei 99.94
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.94
PRK15430296 putative chloramphenical resistance permease RarD; 99.94
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 99.94
KOG4510346 consensus Permease of the drug/metabolite transpor 99.92
KOG1580337 consensus UDP-galactose transporter related protei 99.91
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 99.9
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.9
COG0697292 RhaT Permeases of the drug/metabolite transporter 99.87
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.86
KOG1582367 consensus UDP-galactose transporter related protei 99.86
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 99.85
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 99.81
KOG3912372 consensus Predicted integral membrane protein [Gen 99.79
KOG1583330 consensus UDP-N-acetylglucosamine transporter [Car 99.78
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 99.76
COG2962293 RarD Predicted permeases [General function predict 99.72
PF04142244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 99.72
KOG2765416 consensus Predicted membrane protein [Function unk 99.72
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 99.72
KOG2234345 consensus Predicted UDP-galactose transporter [Car 99.66
KOG2766336 consensus Predicted membrane protein [Function unk 99.46
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 99.3
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.27
COG2510140 Predicted membrane protein [Function unknown] 99.24
KOG4314290 consensus Predicted carbohydrate/phosphate translo 99.23
COG2510140 Predicted membrane protein [Function unknown] 99.21
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.11
PF13536113 EmrE: Multidrug resistance efflux transporter 99.04
PF06800269 Sugar_transport: Sugar transport protein; InterPro 98.97
PRK15430 296 putative chloramphenical resistance permease RarD; 98.91
TIGR00688256 rarD rarD protein. This uncharacterized protein is 98.85
TIGR03340 281 phn_DUF6 phosphonate utilization associated putati 98.73
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 98.72
PLN00411 358 nodulin MtN21 family protein; Provisional 98.52
PRK10532293 threonine and homoserine efflux system; Provisiona 98.51
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.44
PF05653300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 98.44
PRK11272292 putative DMT superfamily transporter inner membran 98.43
PRK11689295 aromatic amino acid exporter; Provisional 98.43
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.39
COG2962 293 RarD Predicted permeases [General function predict 98.33
PTZ00343 350 triose or hexose phosphate/phosphate translocator; 98.31
PRK13499345 rhamnose-proton symporter; Provisional 98.29
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 98.28
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 98.17
TIGR00817 302 tpt Tpt phosphate/phosphoenolpyruvate translocator 98.11
PF13536113 EmrE: Multidrug resistance efflux transporter 97.96
COG0697292 RhaT Permeases of the drug/metabolite transporter 97.86
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.81
TIGR00776 290 RhaT RhaT L-rhamnose-proton symporter family prote 97.81
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.78
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.67
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.59
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 97.59
PRK09541110 emrE multidrug efflux protein; Reviewed 97.58
KOG2922335 consensus Uncharacterized conserved protein [Funct 97.51
COG2076106 EmrE Membrane transporters of cations and cationic 97.48
PRK11431105 multidrug efflux system protein; Provisional 97.48
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 97.47
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 97.34
PF06027 334 DUF914: Eukaryotic protein of unknown function (DU 97.3
PRK13499 345 rhamnose-proton symporter; Provisional 97.23
PF06800269 Sugar_transport: Sugar transport protein; InterPro 97.2
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 97.18
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.14
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.04
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 96.95
PF04142 244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 96.92
PRK09541110 emrE multidrug efflux protein; Reviewed 96.76
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 96.56
KOG1581327 consensus UDP-galactose transporter related protei 96.48
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 96.41
PF07857 254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 96.39
PRK11431105 multidrug efflux system protein; Provisional 96.39
KOG4510346 consensus Permease of the drug/metabolite transpor 96.35
COG2076106 EmrE Membrane transporters of cations and cationic 96.24
PF05653 300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 96.07
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 95.7
COG3238150 Uncharacterized protein conserved in bacteria [Fun 95.63
KOG2234 345 consensus Predicted UDP-galactose transporter [Car 95.62
COG3238150 Uncharacterized protein conserved in bacteria [Fun 95.58
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 95.51
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 95.28
PF06379 344 RhaT: L-rhamnose-proton symport protein (RhaT); In 95.17
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 93.35
KOG2765 416 consensus Predicted membrane protein [Function unk 91.4
KOG1580337 consensus UDP-galactose transporter related protei 90.68
KOG4314 290 consensus Predicted carbohydrate/phosphate translo 89.1
COG4975 288 GlcU Putative glucose uptake permease [Carbohydrat 87.94
PF04342108 DUF486: Protein of unknown function, DUF486; Inter 84.06
COG3169116 Uncharacterized protein conserved in bacteria [Fun 83.83
KOG1582367 consensus UDP-galactose transporter related protei 81.86
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 81.52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
Probab=100.00  E-value=1.2e-39  Score=313.81  Aligned_cols=293  Identities=61%  Similarity=0.998  Sum_probs=249.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015159          109 VTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVT  188 (412)
Q Consensus       109 ~~~~~~~~w~~~~~~~~~~~K~~~~~f~~P~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  188 (412)
                      .+...+..||.+|.+.+++||++++++++|.+++++|+.++.+.+.+.+..+.+++.+.++++++.+++.|+++.+++.+
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   81 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVT   81 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999887766654444555667889999999999999999999


Q ss_pred             HHhhhhccchHHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHHHH
Q 015159          189 SNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRS  268 (412)
Q Consensus       189 ~~~al~~~s~s~~~ii~~~~Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~l~~a~~~  268 (412)
                      .|++++|++++++++++++.|+++++++++++|||++++++++++++++|+.+...+|.++++.|++++++++++|++++
T Consensus        82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~  161 (302)
T TIGR00817        82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRN  161 (302)
T ss_pred             HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877777788899999999999999999


Q ss_pred             HHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhHhhhchHHHHHHHHHHHH-HHHHHHHHHHHH
Q 015159          269 IYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATNT  345 (412)
Q Consensus       269 v~~kk~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~  345 (412)
                      ++.||..+  ++|+.+++.|+++++.+.++|+....|++.....++.+..........+...+..+. +...+|...+.+
T Consensus       162 v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (302)
T TIGR00817       162 IFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFML  241 (302)
T ss_pred             HHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987  899999999999999999999988777544322212111001111122332333333 555667788899


Q ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 015159          346 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ  401 (412)
Q Consensus       346 l~~~sa~~~sv~~~l~~v~~ii~s~~~fge~~t~~~~iG~~lvl~Gv~l~~~~~~~  401 (412)
                      ++++||.++++.++++|++++++|++++||++|+.+++|.+++++|+++|++.|.+
T Consensus       242 l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       242 LGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999976543

specificities overlap.
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function Back     alignment and domain information
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 66/477 (13%), Positives = 131/477 (27%), Gaps = 147/477 (30%)

Query: 16  ISSLRRSPLENHQNVSFISLKPIGAVGEG-------------------GNVIW---GRQL 53
              LR++ L   +    + +   G +G G                     + W       
Sbjct: 137 YLKLRQA-LLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 54  RPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFF 113
            P  +LE              +L+ +L                  +R       L     
Sbjct: 194 SPETVLE--------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--L 237

Query: 114 FFMWYFLN---VIFNILNKRIYNYF---------------------PYPYFVSVIHLLVG 149
                + N   V+ N+ N + +N F                          +S+ H  + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 150 -----VVYCLVSW----AVGLPKRA----PIDSKLLKLLIPVAVCHA--LGHVTSNVSFA 194
                V   L+ +       LP+      P    ++   I   +       HV  +    
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 195 AVAVSFTHTIKALEP-----FFNAAASQFILGQQLPLT------LWLSLAPVVIGVSMAS 243
            +  S    +  LEP      F+  +   +      +       +W  +    + V +  
Sbjct: 358 IIESS----LNVLEPAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 244 LTELSFNWTGFISAMISNISFTYR--SIYSKKAMTDMDSTNIYAYISIIALFVCIPPAII 301
           L + S                T    SIY +  +   +   ++                I
Sbjct: 411 LHKYSL-------VEKQPKESTISIPSIYLELKVKLENEYALHR--------------SI 449

Query: 302 VEGPQLIKHGLSDAISKVGMVKFISDLFW-VGMFYHLYNQLATNTLERVAPLTHAVGNVL 360
           V+   + K   SD +    + ++    +  +G  +HL N       ER+         + 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYF---YSHIG--HHLKN---IEHPERM--------TLF 493

Query: 361 KRVFVIGFSILAFGNKI----STQTGIGTVIA-IAGVAAY-SYIKAQMEEEKRQMKA 411
           + VF+  F  L    KI    +     G+++  +  +  Y  YI     + +R + A
Sbjct: 494 RMVFL-DFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 98.43
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.36
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.36
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 97.91
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
Probab=98.43  E-value=2e-06  Score=68.69  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccchHHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcCc
Q 015159          175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE  246 (412)
Q Consensus       175 ~~~~~l~~~~~~~~~~~al~~~s~s~~~ii-~~~~Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~~  246 (412)
                      .+...+++.++..+...++++.|.+.+..+ ..+.|+++++++++++||+++..+++|++++++|++++...+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344455677888999999999999999888 899999999999999999999999999999999999887644
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00