Citrus Sinensis ID: 015161
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | 2.2.26 [Sep-21-2011] | |||||||
| O34508 | 366 | L-Ala-D/L-Glu epimerase O | yes | no | 0.837 | 0.942 | 0.368 | 1e-49 | |
| Q9WXM1 | 345 | L-Ala-D/L-Glu epimerase O | yes | no | 0.75 | 0.895 | 0.363 | 3e-46 | |
| Q97MK4 | 358 | L-Ala-D/L-Glu epimerase O | yes | no | 0.800 | 0.921 | 0.336 | 2e-38 | |
| O33949 | 385 | Muconate cycloisomerase 1 | N/A | no | 0.849 | 0.909 | 0.268 | 2e-19 | |
| Q43931 | 370 | Muconate cycloisomerase 1 | yes | no | 0.75 | 0.835 | 0.247 | 2e-18 | |
| P51981 | 321 | L-Ala-D/L-Glu epimerase O | N/A | no | 0.713 | 0.915 | 0.295 | 3e-17 | |
| O34514 | 371 | o-succinylbenzoate syntha | no | no | 0.706 | 0.784 | 0.232 | 4e-14 | |
| P42428 | 372 | Chloromuconate cycloisome | no | no | 0.706 | 0.782 | 0.266 | 4e-13 | |
| P95608 | 373 | Muconate cycloisomerase 1 | no | no | 0.759 | 0.839 | 0.263 | 1e-12 | |
| P27099 | 370 | Chloromuconate cycloisome | N/A | no | 0.538 | 0.6 | 0.273 | 2e-12 |
| >sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 | Back alignment and function desciption |
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Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 186/358 (51%), Gaps = 13/358 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
S VLK PA+ S+ G A L H + +AAVEMAL D A+ +PL
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPL 119
Query: 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 227
+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR
Sbjct: 120 YQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIR 179
Query: 228 A-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ D
Sbjct: 180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT----D 235
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
+ ADES + ++++ AD+INIKL K G+ GA +I + A G+ M+G
Sbjct: 236 ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 295
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 296 SMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipeptides L-Ala-L-Asp, L-Ala-L-Leu, L-Ala-L-Met, and L-Ala-L-Ser. Is not able to epimerize other L-Ala-X dipeptides. Is also active with L-Ser-L-Glu and, oddly, L-Pro-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1 |
| >sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1 | Back alignment and function description |
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Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 10/319 (3%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD 182
+F + L F S ++AAV+ A +DA+++ + + L GG + I TD
Sbjct: 79 VRNYARIFEITDRLFG---FPS---LKAAVQFATLDALSQELGTQVCYLLGGKRDEIETD 132
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG 242
T+ I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN G
Sbjct: 133 KTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMG 192
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302
Y +EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+
Sbjct: 193 YTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKF 248
Query: 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362
DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H +
Sbjct: 249 DVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFAL 308
Query: 363 GLGCFKFIDLDTPLLLSED 381
G G F+F DLD+ L+L E+
Sbjct: 309 GTGAFEFHDLDSHLMLKEE 327
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other dipeptides; is most efficient with L-Ala-D/L-Phe, L-Ala-D/L-Tyr, and L-Ala-D/L-His. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0192 PE=1 SV=1 | Back alignment and function description |
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Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 15/345 (4%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
L+VPL PF A ++ V +V ++I G VG+G A VT + ++ ++ +
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITES--IEGAINN 68
Query: 116 EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175
+ + M + ++ L + +AAV++AL D + PL++L GG
Sbjct: 69 YIKRSIVGMDIEDFEAILIKL--DNCIVGNTSAKAAVDIALYDLYGQRYGAPLYKLLGGF 126
Query: 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 234
N + TDITI + SP E + + K G+ TLK+KVGKN K DI+ +R IR A+ + +
Sbjct: 127 RNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVN 186
Query: 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294
+DAN+G++P+EA+ L ++ G+ L EQPV + EGL V+ D + V A
Sbjct: 187 LRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMA 242
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 353
DES S D ++++ D+INIKL K G+ AL+I + G+ M+G M+E +++
Sbjct: 243 DESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVS 302
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398
+ A HL+A IDLD P+L S D V V GA+Y +N
Sbjct: 303 VTAAVHLAAAKRIITKIDLDGPVLCSRDDV-----VGGAMYDNSN 342
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the epimerization of L-Ala-D-Asp. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2 | Back alignment and function description |
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Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 30/380 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V ++ E ++VP I P ++ + ++ V +RI ++G VG GE + + ++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 106 TAMVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
+K + +LK A G+ + GL G++FA R+AVE AL DA A+
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA-----RSAVETALFDAQAQ 120
Query: 163 SVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K 214
+ +PL LFGG V+ T+ + T + AE A ++R KLK+G +
Sbjct: 121 RLGVPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSR 175
Query: 215 NLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
L +D+ + AI +A+ +D N+ + EA+ ++ + V L EQP+ ++
Sbjct: 176 ALADDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAEN 233
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEII 332
GL ++ +A+ V + ADE+ D + ADV +K+A+ G L GA +
Sbjct: 234 RAGLKRLTDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVA 289
Query: 333 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 391
+ A+ ++L G M+E + + L + G K+ +L PLLL+E+ + +
Sbjct: 290 AIALAANIDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYEN 349
Query: 392 AVYKFTNARGHGGFLHWDNI 411
V G G L WD I
Sbjct: 350 FVLHLPQGPGLGITLDWDKI 369
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Catalyzes a syn cycloisomerization. Acinetobacter lwoffii (taxid: 28090) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1) GN=catB PE=3 SV=2 | Back alignment and function description |
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Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+++P I P ++ + + V I+I +G VGWGEA + + ++ VKA+
Sbjct: 10 VDIPTIRPHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDT 69
Query: 116 E----VLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
+L + + ++ + G++FA + A++ AL++ AK +++P+ L
Sbjct: 70 YFKPLLLSIKAPLNVAQTLKLIRKSINGNRFA-----KCAIQTALLEIQAKRLNVPVSEL 124
Query: 172 FGGVSNTITTDITIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVL 223
GG +P++ + + AE + T KLK+G N L+ D++ +
Sbjct: 125 LGGRIRD-----RLPVLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHV 179
Query: 224 RAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
AI +A+ P+ S +D N + E V+ +++L + G+ L EQP ++ + L ++
Sbjct: 180 IAIKKALGPEISVRVDVNRAWSELECVKGIQQLQDGGID--LIEQPCAIENTDALARLTA 237
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 341
+F V++ ADE D +I K + ADV +K+ + G++ A E+ ++ R +G++
Sbjct: 238 ----RFDVAIMADEVLTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGIS 293
Query: 342 LMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSE 380
L G M+E + + H + +F +L PLLL++
Sbjct: 294 LYGGTMLEGPVGSIASAHAFSTFETLEFGTELFGPLLLTQ 333
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Catalyzes a syn cycloisomerization. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG PE=1 SV=2 | Back alignment and function description |
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Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 145/325 (44%), Gaps = 31/325 (9%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GVSN 177
P + G + +LP R A++ AL D A+ L L G +
Sbjct: 64 SVVPQLEKGLTREELQKILPAG------AARNALDCALWDLAARRQQQSLADLIGITLPE 117
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+ T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+
Sbjct: 118 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIV 175
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++GV + EQP+ D L + H + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADES 227
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + ++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+
Sbjct: 228 CHTRSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 285
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSED 381
A L + F DLD P L+ D
Sbjct: 286 ALPLVPQVS---FADLDGPTWLAVD 307
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala-L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Escherichia coli (strain K12) (taxid: 83333) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168) GN=menC PE=1 SV=1 | Back alignment and function description |
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Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 151/314 (48%), Gaps = 23/314 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTAMVKASEACEVLKES--PAMALGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAV 160
T + +LK+ P + +G F + + ++ +A +E A+ D
Sbjct: 62 IGTCL-------HMLKDFFIPNV-VGREFNHPSEVPDSLARYKGNRMAKAGLESAVWDIY 113
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI 220
AK + L GG + + + + + + + Y+K+G+ +K+K+ +D+
Sbjct: 114 AKKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDV 171
Query: 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
E+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD H+
Sbjct: 172 ELVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDIVDHRHL 228
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 339
K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ +
Sbjct: 229 QKHLK----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHH 284
Query: 340 LNLMIGGMVETRLA 353
+ + GGM+ET ++
Sbjct: 285 MQVWCGGMLETGIS 298
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Converts SHCHC to OSB. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 3 |
| >sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 28/319 (8%)
Query: 76 NVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKASEACEVLKESPAMALGSVFG 131
+V IR+ G VG GE+ P P + + + A + A V+ E PA+ +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAIQATINHYLAPLVVGE-PALDASRIMA 81
Query: 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPA 191
+ G + G+ FA +A +EMAL+DAV K V P+ L GG + P+ +
Sbjct: 82 KLHGRVAGNAFA-----KAGIEMALLDAVGKIVDAPIHVLLGGRFRD-RLSVAWPLATGD 135
Query: 192 EAAELASKYR-----KQGFTTLKLKVGK-NLKEDIEVLRAI-RAVHPDSSFILDANEGYK 244
E+ +R K G KLK+G L +D+ AI + + +S +D NE +
Sbjct: 136 VNQEVDEAFRMLEAGKAG--AFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWD 193
Query: 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304
+ L L GV + EQPV R + + + + A+ + DE +SL D
Sbjct: 194 EPTTMRALAPLEAAGVE--IIEQPVARWNLDAMARIHRQARSMLLI----DEGVQSLHDA 247
Query: 305 KKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363
++VK A ++++K+ K G + A + ++ A G+++ +G +ET + L+A
Sbjct: 248 SEVVKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAAS 307
Query: 364 LGCFKF-IDLDTPLLLSED 381
+ + ++ PLL+ ED
Sbjct: 308 IESLPYGGEVIGPLLIEED 326
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Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|P95608|CATB_RHOOP Muconate cycloisomerase 1 OS=Rhodococcus opacus GN=catB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 32/345 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQTAMV 109
E L+VPL+ P AT+ + + + + + G G+GE P P E +T
Sbjct: 10 ETTILDVPLVRPHKFATTSMTAQPLLLVAVTTAGGVTGYGEGVVPGGPWWGGESVETMQA 69
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQ--FASQLKVRAAVEMALIDAVAKSVSMP 167
V + + LG + G++P + A+ +AAV++AL DA A+S+ +P
Sbjct: 70 I------VERYIVPVLLGRGVDEITGIMPDIERVVANARFAKAAVDVALHDAWARSLGVP 123
Query: 168 LWRLFGGVSNTITTDITIPI-VSPA-----EAAELASKYRKQGFTTLKLKVGKNLKEDIE 221
+ L GG + D+T + +PA EA +L R F KLK+G L ++
Sbjct: 124 VHTLLGGAFRK-SVDVTWALGAAPAEEIIEEALDLVESKRHFSF---KLKMGA-LDPAVD 178
Query: 222 VLRAI---RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
R + +A+ + +D N + A++ + +L E GV L EQP + E L
Sbjct: 179 TARVVQIAQALQGKAGVRIDVNARWDRLTALKYVPRLVEGGVE--LIEQPTPGEQLEVLA 236
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRA 337
++ + V V ADES ++ D ++ + ADVI +K K G L + E++ + +A
Sbjct: 237 ELNRLVP----VPVMADESVQTPHDALEVARRGAADVIALKTTKCGGLQKSREVVAIAKA 292
Query: 338 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 381
+G+ +E + + H + F +L PLL SE+
Sbjct: 293 AGIACHGATSIEGPIGTAASIHFACAEPGIDFGTELFGPLLFSEE 337
|
Rhodococcus opacus (taxid: 37919) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P27099|TCBD_PSESQ Chloromuconate cycloisomerase OS=Pseudomonas sp. (strain P51) GN=tcbD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 27/249 (10%)
Query: 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----- 188
A +L L +AA+++AL D A+++++ + L GG T +IPI
Sbjct: 86 ARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLAS 140
Query: 189 -----SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANE 241
A E+ R F K+K+G + +D+E +R+I +AV +S +D N+
Sbjct: 141 GDTARDIDSALEMIETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQ 197
Query: 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 301
G+ Q A + +L E GV L EQPV R ++ L ++ ++ GV++ ADES SL
Sbjct: 198 GWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSL 251
Query: 302 DDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ + + D ++KL + G+ L++ V A+G++ G M+++ + A H+
Sbjct: 252 SSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311
Query: 361 SAGLGCFKF 369
A L +
Sbjct: 312 YATLPSLPY 320
|
Pseudomonas sp. (strain P51) (taxid: 65067) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| 225456012 | 420 | PREDICTED: l-Ala-D/L-Glu epimerase [Viti | 0.992 | 0.973 | 0.770 | 0.0 | |
| 297734245 | 401 | unnamed protein product [Vitis vinifera] | 0.924 | 0.950 | 0.815 | 0.0 | |
| 224118774 | 387 | predicted protein [Populus trichocarpa] | 0.934 | 0.994 | 0.794 | 0.0 | |
| 356512290 | 387 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.939 | 1.0 | 0.785 | 1e-172 | |
| 356525058 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.939 | 0.875 | 0.780 | 1e-171 | |
| 449439093 | 432 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.927 | 0.884 | 0.760 | 1e-167 | |
| 255567834 | 375 | muconate cycloisomerase, putative [Ricin | 0.851 | 0.936 | 0.810 | 1e-165 | |
| 357133316 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.907 | 0.846 | 0.705 | 1e-154 | |
| 242052167 | 439 | hypothetical protein SORBIDRAFT_03g00667 | 0.912 | 0.856 | 0.696 | 1e-152 | |
| 18401824 | 410 | cytochrome P450, family 77, subfamily A, | 0.951 | 0.956 | 0.679 | 1e-152 |
| >gi|225456012|ref|XP_002277056.1| PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/423 (77%), Positives = 359/423 (84%), Gaps = 14/423 (3%)
Query: 1 MLSVGFYL--PFNNIKPQ--KPICQMASSPP-------AAAAPTSFSFKNLTQTFTVDVQ 49
M +GF L F KP+ KP SSP A A PT+F FKNL +TFTVDVQ
Sbjct: 1 MALIGFSLHSQFLCSKPRTSKPRRIGPSSPSGSAVVKMAVATPTTFGFKNLIETFTVDVQ 60
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
RAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGCVGWGE P+LP VTAE+Q TAM
Sbjct: 61 RAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGEGPILPFVTAENQATAMA 120
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
KA+E CEVL+ PAM LG + G + LPGH+FAS VRA VEMALIDAVA S+ +PLW
Sbjct: 121 KAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFAS---VRAGVEMALIDAVANSMGIPLW 177
Query: 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
RLFGGVSN ITTDITIPIVSPA+AAELA+KYRKQGF TLKLKVGKNL DIEVL+AIR
Sbjct: 178 RLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKNLNADIEVLQAIRVA 237
Query: 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289
HPD FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQPVHRDDWEGLGHVS +A+DK+G
Sbjct: 238 HPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWEGLGHVSKVARDKYG 297
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVE 349
VSVAADESCRSL DVKKIV+GNLA+VINIKLAKVGVLGALEII+ RA+GL+LMIGGMVE
Sbjct: 298 VSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAARAAGLDLMIGGMVE 357
Query: 350 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409
TRLAMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY+VSGAVYKFTNARGHGGFLHWD
Sbjct: 358 TRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYKFTNARGHGGFLHWD 417
Query: 410 NIA 412
NIA
Sbjct: 418 NIA 420
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734245|emb|CBI15492.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/384 (81%), Positives = 344/384 (89%), Gaps = 3/384 (0%)
Query: 28 AAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC 87
A A PT+F FKNL +TFTVDVQRAE RPLNVPLIAPFTIA+SRL++VENVAIRIEL NGC
Sbjct: 2 AVATPTTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGC 61
Query: 88 VGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLK 147
VGWGE P+LP VTAE+Q TAM KA+E CEVL+ PAM LG + G + LPGH+FAS
Sbjct: 62 VGWGEGPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFAS--- 118
Query: 148 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 207
VRA VEMALIDAVA S+ +PLWRLFGGVSN ITTDITIPIVSPA+AAELA+KYRKQGF T
Sbjct: 119 VRAGVEMALIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKT 178
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
LKLKVGKNL DIEVL+AIR HPD FILDANEGY P+EA+EVLEKL+EMGVTPVLFEQ
Sbjct: 179 LKLKVGKNLNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQ 238
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
PVHRDDWEGLGHVS +A+DK+GVSVAADESCRSL DVKKIV+GNLA+VINIKLAKVGVLG
Sbjct: 239 PVHRDDWEGLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLG 298
Query: 328 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGY 387
ALEII+ RA+GL+LMIGGMVETRLAMGFAGHL+AGLGCFKFIDLDTPLLLSEDPV +GY
Sbjct: 299 ALEIIDAARAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGY 358
Query: 388 EVSGAVYKFTNARGHGGFLHWDNI 411
+VSGAVYKFTNARGHGGFLHWDNI
Sbjct: 359 DVSGAVYKFTNARGHGGFLHWDNI 382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118774|ref|XP_002317902.1| predicted protein [Populus trichocarpa] gi|222858575|gb|EEE96122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/390 (79%), Positives = 349/390 (89%), Gaps = 5/390 (1%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MA S P ++F F++L +TF VDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRI
Sbjct: 1 MAGSNPKQV--STFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRI 58
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELS+GCVGWGEAP+LP VTAEDQ TAM+KA EACE+LK S +M LG V V+ +LPGH+
Sbjct: 59 ELSDGCVGWGEAPILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHE 118
Query: 142 FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYR 201
FAS VRA VEMALIDAVAKS+++PLW LFGG S++ITTDITIPIVS AEAAELASKYR
Sbjct: 119 FAS---VRAGVEMALIDAVAKSINVPLWILFGGASDSITTDITIPIVSSAEAAELASKYR 175
Query: 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261
KQGF TLKLKVGKNLKEDIEVL+AIRAVHPD FILDANEGYKP+EA+EVLE+L++MGVT
Sbjct: 176 KQGFQTLKLKVGKNLKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVT 235
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321
P+LFEQPVHRDDWEGLGHV+HIAK K+GVSVAADESCRSL D K+I+KGNLADVINIKLA
Sbjct: 236 PILFEQPVHRDDWEGLGHVTHIAKGKYGVSVAADESCRSLVDAKRIIKGNLADVINIKLA 295
Query: 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
KVGV+G LEIIE R SGL+LMIGGMVETRLAMGFAGHL+AG GCFKFIDLDTPLLLSED
Sbjct: 296 KVGVVGGLEIIEEARTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSED 355
Query: 382 PVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411
PVL+GYEVSGAVYKFT+A+GH GFL WDN+
Sbjct: 356 PVLEGYEVSGAVYKFTDAQGHAGFLDWDNV 385
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512290|ref|XP_003524853.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 307/391 (78%), Positives = 347/391 (88%), Gaps = 4/391 (1%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AAA T F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRLD+VENVAIR+
Sbjct: 1 MASATPTAAAIT-FGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRV 59
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAMVKASEAC L++ PA+ LGS+ G +AG+LPGHQ
Sbjct: 60 ELSNGAVGWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQ 119
Query: 142 FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYR 201
FAS RA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY
Sbjct: 120 FAS---ARAGIEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYY 176
Query: 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261
K+GF TLKLKVGKNL DIEVL+AIR HP FILDANEGY +EAV+VLEKL++MG+T
Sbjct: 177 KEGFKTLKLKVGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLT 236
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321
PVLFEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLA
Sbjct: 237 PVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLA 296
Query: 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
KVGV+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+D
Sbjct: 297 KVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDD 356
Query: 382 PVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
PVL+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 357 PVLEGYEVSGATYKFTNARGHGGFLHWDNLA 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525058|ref|XP_003531144.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/391 (78%), Positives = 345/391 (88%), Gaps = 4/391 (1%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRI 81
MAS+ P AA P +F FKNL +TFTVDV RAENRPLNVPLIAPFTIATSRL +VENVAIR+
Sbjct: 56 MASATPTAA-PITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVAIRV 114
Query: 82 ELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ 141
ELSNG VGWGEAP+LP VTAEDQ TAM KASEAC L+ PA+ LGS+ G +AG+LPGHQ
Sbjct: 115 ELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILPGHQ 174
Query: 142 FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYR 201
FAS VRA +EMA+IDAVA S+ +PLWRLFGG SNTITTDITIPIVSPAEAAELASKY
Sbjct: 175 FAS---VRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYY 231
Query: 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261
K+GF TLKLKVGKNL DIEVL+AIR HP+ FILDANEGY +EAVEVLEKL++M +T
Sbjct: 232 KEGFKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLT 291
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321
PVLFEQPVHRDDW+GL +V +IA++++GVSVAADESCRS+ DV KIV+GN+ DVINIKLA
Sbjct: 292 PVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLA 351
Query: 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
KVGV+GALEIIE +A+GL+LMIGGMVETRLAMGFAG L+AGLGCFKFIDLDTPLLLS+D
Sbjct: 352 KVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDD 411
Query: 382 PVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
PVL+GYEVSGA YKFTNARGHGGFLHWDN+A
Sbjct: 412 PVLEGYEVSGATYKFTNARGHGGFLHWDNLA 442
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439093|ref|XP_004137322.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] gi|449497562|ref|XP_004160436.1| PREDICTED: LOW QUALITY PROTEIN: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 296/389 (76%), Positives = 341/389 (87%), Gaps = 7/389 (1%)
Query: 28 AAAAP----TSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIEL 83
AAAAP S FKNL +TFTV+VQRAENR LNVPLI PFTIA+SRL+ VENVAIRIEL
Sbjct: 46 AAAAPADSRNSLGFKNLMETFTVNVQRAENRTLNVPLIEPFTIASSRLEMVENVAIRIEL 105
Query: 84 SNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFA 143
SNGCVGWGEAP+LP VTAEDQ TAM KA E CE+L++ P LGS ++ LPGH+FA
Sbjct: 106 SNGCVGWGEAPILPFVTAEDQSTAMAKAEEVCELLRQRPPSTLGSAMMQISETLPGHEFA 165
Query: 144 SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ 203
S VRA VEMALIDAVA S+++PLW+LFGGVS++ITTDITIPI S + AA+LA+KYR Q
Sbjct: 166 S---VRAGVEMALIDAVANSINIPLWKLFGGVSDSITTDITIPITSASNAAKLAAKYRDQ 222
Query: 204 GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263
GF TLKLKVGK+LK DIEVL++IR VHPD FILDANEGY +EA++VLEKL+E+GVTP
Sbjct: 223 GFKTLKLKVGKDLKSDIEVLKSIRMVHPDCEFILDANEGYDTEEAIQVLEKLHELGVTPT 282
Query: 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323
LFEQPVHRD+WEGLG+VS +A+DK+GVSVAADESCRS+DDVK+IV+G+LADVINIKLAKV
Sbjct: 283 LFEQPVHRDNWEGLGNVSRVARDKYGVSVAADESCRSVDDVKRIVEGDLADVINIKLAKV 342
Query: 324 GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 383
GVLGA+EIIEV R SGL+LMIGGMVETRLAMGF+GHL+AGLGCFK+IDLDTPLLLSEDPV
Sbjct: 343 GVLGAIEIIEVARGSGLSLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDTPLLLSEDPV 402
Query: 384 LDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
GYEVSGAVYKFTN++GHGG+LHWDNIA
Sbjct: 403 HGGYEVSGAVYKFTNSQGHGGYLHWDNIA 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567834|ref|XP_002524895.1| muconate cycloisomerase, putative [Ricinus communis] gi|223535858|gb|EEF37519.1| muconate cycloisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/354 (81%), Positives = 317/354 (89%), Gaps = 3/354 (0%)
Query: 35 FSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP 94
F F++L +T TVDV+RAENRPLNVPLIAPFTIA+SRLD+VENVAIRIELSNGC GWGE P
Sbjct: 16 FGFRDLMETLTVDVERAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSNGCAGWGETP 75
Query: 95 VLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEM 154
+LP VTAEDQ TAMVKA EACE+LK SP M LGS+ + +LPGHQFAS VRA VEM
Sbjct: 76 ILPFVTAEDQPTAMVKAREACELLKSSPPMTLGSLLEKIGAILPGHQFAS---VRAGVEM 132
Query: 155 ALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
ALIDAVA S+ +PLWRLFGGVS++ITTDITIPIVSP EAAELASKYRKQGF TLKLKVGK
Sbjct: 133 ALIDAVANSIGIPLWRLFGGVSDSITTDITIPIVSPTEAAELASKYRKQGFKTLKLKVGK 192
Query: 215 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274
NLK DIEVL+AIRAV+PD FILDANEGYKP+EA+EVLEKL+EM VTP+LFEQPVHRDDW
Sbjct: 193 NLKADIEVLQAIRAVYPDCLFILDANEGYKPKEAIEVLEKLHEMQVTPILFEQPVHRDDW 252
Query: 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 334
EGLGHV+ IAK K+GVSVAADESCR L DVKKIV+GNLADVINIKLAKVGV+ ALEIIE+
Sbjct: 253 EGLGHVTSIAKGKYGVSVAADESCRGLIDVKKIVEGNLADVINIKLAKVGVVEALEIIEL 312
Query: 335 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYE 388
RAS L+LMIGGMVETRLAMGFAGHL+AGLGCFKF+DLDTPLLL+EDPV GYE
Sbjct: 313 ARASRLDLMIGGMVETRLAMGFAGHLAAGLGCFKFVDLDTPLLLAEDPVHGGYE 366
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133316|ref|XP_003568272.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/377 (70%), Positives = 307/377 (81%), Gaps = 3/377 (0%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
+F F+ L +TF+VDV AE RPL+VPL APFTIA+SRL+ V NVA+R+ELS+G VGWGEA
Sbjct: 64 TFGFEALKETFSVDVSAAEARPLDVPLAAPFTIASSRLESVSNVAVRVELSSGAVGWGEA 123
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVE 153
PVLP VTAEDQ A+ AC L +P+ LG+V VA LPGH FAS RA VE
Sbjct: 124 PVLPSVTAEDQPAALAAVGRACAKLAGAPSAPLGAVLEDVAAALPGHAFAS---ARAGVE 180
Query: 154 MALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213
MA+IDAVA S+ +PLWRLFGG SN++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVG
Sbjct: 181 MAVIDAVANSIRVPLWRLFGGASNSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVG 240
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
KNL DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDD
Sbjct: 241 KNLNSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDD 300
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 333
WEGL VS A +K+ V+VAADESCR L D +KI+ GNL+ VINIKLAK+GVLGALE+I+
Sbjct: 301 WEGLRDVSTAAMEKYRVAVAADESCRGLLDAQKIINGNLSHVINIKLAKLGVLGALEVID 360
Query: 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAV 393
R +G+ LMIGGMVETR+AMGFAGHL+AGLGCF FIDLDTPLLLSEDPV GYE SG +
Sbjct: 361 AARKAGIALMIGGMVETRIAMGFAGHLAAGLGCFSFIDLDTPLLLSEDPVYGGYEASGPL 420
Query: 394 YKFTNARGHGGFLHWDN 410
YKFTNARGHGGFLH DN
Sbjct: 421 YKFTNARGHGGFLHLDN 437
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052167|ref|XP_002455229.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] gi|241927204|gb|EES00349.1| hypothetical protein SORBIDRAFT_03g006670 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/379 (69%), Positives = 310/379 (81%), Gaps = 3/379 (0%)
Query: 34 SFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA 93
SF F L +TF+VDV A+ RPL+VPL APFTIA+SRL V NVA+R+EL +G VGWGEA
Sbjct: 62 SFGFDALKETFSVDVAAADARPLDVPLAAPFTIASSRLVAVSNVAVRVELRSGAVGWGEA 121
Query: 94 PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVE 153
PVLP VTAEDQ A+ A AC L+++ A LG++ VA +LPGH FAS RA VE
Sbjct: 122 PVLPSVTAEDQPAALDAAGRACAALEDASAAPLGALLQDVASVLPGHAFAS---ARAGVE 178
Query: 154 MALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213
MALIDAVA S+ +PLWRLFGG S+++TTDITIPIV+P EAA+LA+KYR QGF TLKLKVG
Sbjct: 179 MALIDAVANSIRIPLWRLFGGASDSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVG 238
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
KNL DIEVL+AIR VHPD SFILDANEGY +A+EVL++L EMGVTPVLFEQPVHRDD
Sbjct: 239 KNLNSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDD 298
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 333
W+GL VS +A +K+ V+VAADESCRSL D +KI++GNLA VINIKLAK+G+LGALEII+
Sbjct: 299 WDGLRDVSSVAMEKYKVAVAADESCRSLLDAQKIIQGNLAHVINIKLAKLGILGALEIID 358
Query: 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAV 393
R + ++LMIGGMVETR+AMGFAGHL+AGLGCF F+DLDTPLLLSEDPV GYE G +
Sbjct: 359 AARKANISLMIGGMVETRIAMGFAGHLAAGLGCFSFVDLDTPLLLSEDPVYGGYEAFGPL 418
Query: 394 YKFTNARGHGGFLHWDNIA 412
YKFTNARGHGGFLH DN A
Sbjct: 419 YKFTNARGHGGFLHLDNDA 437
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401824|ref|NP_566605.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] gi|13878121|gb|AAK44138.1|AF370323_1 unknown protein [Arabidopsis thaliana] gi|17104793|gb|AAL34285.1| unknown protein [Arabidopsis thaliana] gi|332642553|gb|AEE76074.1| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/405 (67%), Positives = 329/405 (81%), Gaps = 13/405 (3%)
Query: 8 LPFNNIKPQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIA 67
L F N P+ PI M+ + FK LT+ FTV V +AENR LNV L++PFTIA
Sbjct: 18 LNFQN-SPKSPITVMSKTS---------KFKTLTENFTVRVLKAENRELNVALLSPFTIA 67
Query: 68 TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALG 127
+SRLD V NVAIRIEL++G VGWGEAP+LP VTAEDQ AMVKA EA E L+E P M LG
Sbjct: 68 SSRLDSVSNVAIRIELNDGFVGWGEAPILPSVTAEDQIMAMVKAREASEFLRELPEMKLG 127
Query: 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 187
+V + LPGHQFAS VRA +EMA+IDA AKSV +PLW+LFGG S+TITTDITIPI
Sbjct: 128 NVLQEIGRFLPGHQFAS---VRAGMEMAMIDAAAKSVRVPLWKLFGGASSTITTDITIPI 184
Query: 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247
VSPAEA+ LASKYRK+GF TLKLKVGKNLK DIEVL+AIRAVHP SFILDANEGY+ +E
Sbjct: 185 VSPAEASVLASKYRKRGFETLKLKVGKNLKADIEVLQAIRAVHPTCSFILDANEGYQTEE 244
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307
AV+VLE L+EM VTPVLFEQPVHRD+WEGL HV+ AK++FGVS+AADESCR L D+KKI
Sbjct: 245 AVKVLETLHEMKVTPVLFEQPVHRDNWEGLSHVTRTAKNRFGVSIAADESCRGLTDLKKI 304
Query: 308 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367
++GN+ DV+NIKLAK G+L +LE+IE+ R+SG+ LMIGGMVETRLAMGF+GHL+AGLGCF
Sbjct: 305 IEGNIVDVVNIKLAKTGILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAGLGCF 364
Query: 368 KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
+FIDLDTPLLL++DPV GY+ GAVY+F + GHGG+L W+++A
Sbjct: 365 RFIDLDTPLLLADDPVQGGYKACGAVYEFKDEGGHGGYLQWNDVA 409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| UNIPROTKB|Q81PF7 | 350 | BAS2659 "Mandelate racemase/mu | 0.781 | 0.92 | 0.342 | 1.9e-42 | |
| TIGR_CMR|BA_2850 | 350 | BA_2850 "mandelate racemase/mu | 0.781 | 0.92 | 0.342 | 1.9e-42 | |
| TIGR_CMR|BA_0339 | 369 | BA_0339 "mandelate racemase/mu | 0.762 | 0.850 | 0.259 | 2.3e-30 | |
| UNIPROTKB|Q71WQ8 | 374 | LMOf2365_2493 "N-acylamino aci | 0.665 | 0.732 | 0.296 | 7.6e-25 | |
| UNIPROTKB|P51981 | 321 | ycjG "L-Ala-D/L-Glu epimerase" | 0.713 | 0.915 | 0.298 | 1.1e-21 | |
| TIGR_CMR|SPO_3606 | 321 | SPO_3606 "mandelate racemase/m | 0.524 | 0.672 | 0.353 | 6.1e-20 | |
| TIGR_CMR|SPO_1594 | 368 | SPO_1594 "mandelate racemase/m | 0.708 | 0.793 | 0.254 | 3.5e-18 | |
| UNIPROTKB|Q81K98 | 368 | BAS4746 "N-acylamino acid race | 0.703 | 0.788 | 0.263 | 8e-17 | |
| TIGR_CMR|BA_5107 | 368 | BA_5107 "N-acylamino acid race | 0.703 | 0.788 | 0.263 | 8e-17 | |
| UNIPROTKB|O34514 | 371 | menC "o-succinylbenzoate synth | 0.706 | 0.784 | 0.235 | 1.5e-16 |
| UNIPROTKB|Q81PF7 BAS2659 "Mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 116/339 (34%), Positives = 180/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA--SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175
L + +G LL Q + +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 234
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 353
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 392
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_2850 BA_2850 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 116/339 (34%), Positives = 180/339 (53%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF A + ++E++ + I G VG G P +T D + +A +
Sbjct: 13 VNLHTPFKTALRTVTEIESIDVYIHTDEGIVGKGAGAATPVITG-DFANGIEEA-----I 66
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFA--SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175
L + +G LL Q + +AAV++AL D + ++PL+ L GG
Sbjct: 67 LGPMRSSLIGQDIIQFQQLLQHIQMSCIGNPSAKAAVDIALYDVYCQYHNIPLYALLGG- 125
Query: 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 234
I TDIT+ + P A+ A ++ ++GF TLK+KVGK+ D+E + AIR +V +++
Sbjct: 126 KKEIHTDITLSVDEPFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTT 185
Query: 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294
LDAN+G+ P+EAV +++++ + EQPVH DW+GL +V KD + A
Sbjct: 186 LRLDANQGWNPKEAVSIIKEMENRNLNIEFIEQPVHAKDWDGLKYV----KDHVQTPIMA 241
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 353
DES S D KIV+G D+INIKL K G+ A I ++ A+G+ M+G M+E+ L+
Sbjct: 242 DESIFSASDALKIVQGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLS 301
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGA 392
+ HL+A + DLD PL L E+P +G SG+
Sbjct: 302 VSAVAHLAAAHPNIHYFDLDAPLWLMEEP--EGMTYSGS 338
|
|
| TIGR_CMR|BA_0339 BA_0339 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 86/332 (25%), Positives = 169/332 (50%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA--MVKASE 113
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++ ++K +
Sbjct: 11 IRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTL 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
A ++ ++P M + + ++ + G A +AA+++A D + K ++ P+++L G
Sbjct: 71 APALIGQNP-MNIEKIHDMMDNTIYGVPTA-----KAAIDIACFDIMGKKLNQPVYQLIG 124
Query: 174 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHP 231
G + I P E AE A+ ++G+ + K+KVG N+KED++ + A+R V
Sbjct: 125 GRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGN 184
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFGV 290
D + +D N+G+K + L L +G + EQPV DD + + H+ + K +
Sbjct: 185 DIAIRVDVNQGWK--NSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDL 238
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 349
+ DE + ++++I+ + AD +NIKL K G + A+++ +G+ +G MVE
Sbjct: 239 PLMIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVE 298
Query: 350 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
+ +A H++ ++L PL ++D
Sbjct: 299 SSVASSAGFHVAFSKKIITSVELTGPLKFTKD 330
|
|
| UNIPROTKB|Q71WQ8 LMOf2365_2493 "N-acylamino acid racemase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 89/300 (29%), Positives = 151/300 (50%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM-VKASEA 114
+PLIAPF + L+ + I + G G+GE LP T E TA+ +
Sbjct: 13 LPLIAPFKTSYGELNSKDFYIIELVNEEGIRGYGELEAFPLPDYTEETLGTAISIIKQHL 72
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174
+L + V + + G++ A +AAVE+A+ DA AK+ + L ++ G
Sbjct: 73 LPILAQKEIRTPEEV-NQMFSWIQGNEMA-----KAAVELAVWDAFAKNEKLSLAKMIGA 126
Query: 175 VSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 233
++I ++I + AEA +L S+Y +G+ +KLK+ K+DI+ ++A+R P+
Sbjct: 127 KKDSIAVGVSIGVQHSAEALVQLVSQYMDEGYERVKLKIAP--KKDIQFVKAVREKFPNL 184
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI-AKDKFGVSV 292
S + DAN Y ++ + +L++L + + EQP D+ V H + K +
Sbjct: 185 SLMADANSAYNREDFL-LLKELDHFNLE--MIEQPFGTKDF-----VEHAWLQKKLKTRI 236
Query: 293 AADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR-ASGLNLMI--GGMVE 349
DE+ RSLDD+K+ +N+KLA+VG G E +++ R S NL++ GGM+E
Sbjct: 237 CLDENIRSLDDLKQAHMLGSCQAVNLKLARVG--GMSEALKIARYCSDNNLLVWCGGMLE 294
|
|
| UNIPROTKB|P51981 ycjG "L-Ala-D/L-Glu epimerase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 97/325 (29%), Positives = 147/325 (45%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GVSN 177
P + G + +LP R A++ AL D A+ L L G +
Sbjct: 64 SVVPQLEKGLTREELQKILPAGA------ARNALDCALWDLAARRQQQSLADLIGITLPE 117
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+ T T+ I +P + A AS + G LK+K+ +L + V AIR PD++ I+
Sbjct: 118 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMV--AIRTAVPDATLIV 175
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++GV + EQP+ D L + H + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGVA--MLEQPLPAQDDAALENFIH------PLPICADES 227
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + ++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+
Sbjct: 228 CHTRSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 285
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSED 381
A L + F DLD P L+ D
Sbjct: 286 ALPLVPQVS---FADLDGPTWLAVD 307
|
|
| TIGR_CMR|SPO_3606 SPO_3606 "mandelate racemase/muconate lactonizing enzyme family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 6.1e-20, P = 6.1e-20
Identities = 83/235 (35%), Positives = 116/235 (49%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFG-GVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 207
R AV+ AL D +K W L G T T+ + +P A+K +
Sbjct: 83 RNAVDCALWDLESKRAGKRAWDLAGLPAPGPEITAYTLSLDTPDAMQAQAAKNAHRPL-- 140
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
LK+K+G +D+ L A+RA PD+ I+DANEG+ + ++ L +GV L EQ
Sbjct: 141 LKIKLGT--PDDMPRLEAVRAGAPDAKIIIDANEGWSAEVYADLAPHLVRLGVA--LVEQ 196
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ E L I ++ V V ADESC + + KG DV+NIKL K G L
Sbjct: 197 PLPAGQDEAL-----IGMER-PVPVCADESCHDRASLAAL-KGKY-DVVNIKLDKTGGLT 248
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
ALE+ A G ++M+G MV + LAM A ++ G DLD PLLL+ED
Sbjct: 249 EALELRRAALAEGYDIMVGCMVGSSLAMAPATLVAQGA---LVTDLDGPLLLAED 300
|
|
| TIGR_CMR|SPO_1594 SPO_1594 "mandelate racemase/muconate lactonizing enzyme, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 80/314 (25%), Positives = 145/314 (46%)
Query: 56 LNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+++PL P+ ++ RL + ++ +++E G GWGE H + E
Sbjct: 11 VDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIE 70
Query: 114 ACE--VLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
VL P L V + LPGH +A ++ ++MA D ++ +P+ L
Sbjct: 71 TMAPFVLGLDPRRLL-DVERAMDIALPGHLYA-----KSPIDMACWDIAGQAAGLPIADL 124
Query: 172 FGGVSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 230
GG S T + + S E + +YR++G+ +K+G +++ DI +R + +
Sbjct: 125 MGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIR 184
Query: 231 PDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289
+L D N G+ Q+A+ V+ ++ V +FEQP E L ++ I +
Sbjct: 185 KPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQP-----GETLDDIAAI-RPLHS 235
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMV 348
V+ DE +L D ++ + LA+V IKL +VG L A + ++ A G+++ +
Sbjct: 236 APVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATG 295
Query: 349 ETRLAMGFAGHLSA 362
+ LA A HL+A
Sbjct: 296 GSVLADAEALHLAA 309
|
|
| UNIPROTKB|Q81K98 BAS4746 "N-acylamino acid racemase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 81/307 (26%), Positives = 141/307 (45%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKS 163
+TA+ + L A S V L H +++ +A +E A+ D AK
Sbjct: 61 VKTALHVLQD---FLLPDLLKAEISHPNEVPSLFQ-HIKRNRM-AKAGIEGAVWDLYAKR 115
Query: 164 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
L L GG + I + I I + + KY ++G+ K+K+ D E+L
Sbjct: 116 QKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYELL 173
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H + +
Sbjct: 174 KEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQL 227
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNL 342
K K + DES SL+D + + ++NIK +VG L +++I + +
Sbjct: 228 QK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPV 286
Query: 343 MIGGMVE 349
GGMVE
Sbjct: 287 WCGGMVE 293
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| TIGR_CMR|BA_5107 BA_5107 "N-acylamino acid racemase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 228 (85.3 bits), Expect = 8.0e-17, P = 8.0e-17
Identities = 81/307 (26%), Positives = 141/307 (45%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++A +PL+ PF + ++ E++ I +E +G +G+GE P T E
Sbjct: 1 MEIKKATLHITEMPLVIPFAASYGTYEKRESIVIELEDEDGYIGFGEVVAFSEPWYTEET 60
Query: 104 QQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKS 163
+TA+ + L A S V L H +++ +A +E A+ D AK
Sbjct: 61 VKTALHVLQD---FLLPDLLKAEISHPNEVPSLFQ-HIKRNRM-AKAGIEGAVWDLYAKR 115
Query: 164 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
L L GG + I + I I + + KY ++G+ K+K+ D E+L
Sbjct: 116 QKKSLATLLGGTKSEIEVGVVIGINTIPVMLKQIEKYAEEGYERFKVKIKPG--HDYELL 173
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+ IR P + DAN Y + E L++L E + ++ EQP+ D++ L H + +
Sbjct: 174 KEIRKEFPHIPLMADANSAYTLADT-ESLKRLDEFQL--MMIEQPLA--DYDFLDH-AQL 227
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNL 342
K K + DES SL+D + + ++NIK +VG L +++I + +
Sbjct: 228 QK-KIETPICLDESIHSLEDARVAITLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPV 286
Query: 343 MIGGMVE 349
GGMVE
Sbjct: 287 WCGGMVE 293
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| UNIPROTKB|O34514 menC "o-succinylbenzoate synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 74/314 (23%), Positives = 153/314 (48%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTAMVKASEACEVLKES--PAMALGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAV 160
T + +LK+ P + +G F + + ++ +A +E A+ D
Sbjct: 62 IGTCL-------HMLKDFFIPNV-VGREFNHPSEVPDSLARYKGNRMAKAGLESAVWDIY 113
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI 220
AK + L GG + + + + + + + Y+K+G+ +K+K+ +D+
Sbjct: 114 AKKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDV 171
Query: 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
E+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD + H
Sbjct: 172 ELVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDI--VDH- 225
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 339
H+ K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ +
Sbjct: 226 RHLQKH-LKTAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHH 284
Query: 340 LNLMIGGMVETRLA 353
+ + GGM+ET ++
Sbjct: 285 MQVWCGGMLETGIS 298
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q97MK4 | AEEP_CLOAB | 5, ., 1, ., 1, ., n, 1 | 0.3362 | 0.8009 | 0.9217 | yes | no |
| O34508 | AEEP_BACSU | 5, ., 1, ., 1, ., n, 1 | 0.3687 | 0.8373 | 0.9426 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 5.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00017730001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (420 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00025552001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (647 aa) | • | 0.481 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 412 | |||
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 1e-118 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 2e-60 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 2e-47 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 6e-43 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 2e-39 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 5e-35 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 4e-29 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 2e-28 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 4e-25 | |
| PRK15129 | 321 | PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provi | 2e-24 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 1e-23 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 2e-21 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 7e-16 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 3e-15 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 4e-15 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 8e-14 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 4e-13 | |
| pfam13378 | 111 | pfam13378, MR_MLE_C, Enolase C-terminal domain-lik | 1e-12 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 2e-12 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 2e-11 | |
| cd03327 | 341 | cd03327, MR_like_2, Mandelate racemase (MR)-like s | 2e-10 | |
| cd03329 | 368 | cd03329, MR_like_4, Mandelate racemase (MR)-like s | 1e-09 | |
| cd03325 | 352 | cd03325, D-galactonate_dehydratase, D-galactonate | 1e-07 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 2e-06 | |
| COG0148 | 423 | COG0148, Eno, Enolase [Carbohydrate transport and | 1e-05 | |
| pfam02746 | 117 | pfam02746, MR_MLE_N, Mandelate racemase / muconate | 7e-05 | |
| cd03322 | 361 | cd03322, rpsA, The starvation sensing protein RpsA | 3e-04 | |
| cd03326 | 385 | cd03326, MR_like_1, Mandelate racemase (MR)-like s | 0.001 | |
| cd03323 | 395 | cd03323, D-glucarate_dehydratase, D-Glucarate dehy | 0.002 | |
| PRK14017 | 382 | PRK14017, PRK14017, galactonate dehydratase; Provi | 0.003 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-118
Identities = 136/331 (41%), Positives = 191/331 (57%), Gaps = 17/331 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ RP +PL PFTIA + ENV + IEL G G+GEA P VT E ++ +
Sbjct: 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLA 59
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
L L + + LLPG+ A RAAV++AL D AK + +PL+
Sbjct: 60 ALKSVRPALIGGDPR-LEKLLEALQELLPGNGAA-----RAAVDIALWDLEAKLLGLPLY 113
Query: 170 RLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 228
+L+GG + + TD TI I +P A A K K+GF LK+K+G +L++DIE +RAIR
Sbjct: 114 QLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIRE 173
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
PD+ +DAN+G+ P+EAVE+L +L E+GV L EQPV D +GL ++ +DK
Sbjct: 174 AAPDARLRVDANQGWTPEEAVELLRELAELGVE--LIEQPVPAGDDDGLAYL----RDKS 227
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 347
+ + ADESC S D ++ G D INIKL K G+ AL I ++ RA+GL +M+G M
Sbjct: 228 PLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCM 287
Query: 348 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLL 378
VE+ L++ A HL+A F+DLD PLLL
Sbjct: 288 VESSLSIAAAAHLAA--AKADFVDLDGPLLL 316
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The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-60
Identities = 102/363 (28%), Positives = 160/363 (44%), Gaps = 29/363 (7%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P+ VPL PF + + V + I +G VGWGEA +A
Sbjct: 9 IPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY----GEEAEAVL 64
Query: 114 ACEVLKESPAMALGSVFGVV--AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
+L + ++ + AG +AV++AL D K++ +P+++L
Sbjct: 65 LAPLLIGRDPFDIERIWQKLYRAGFARRGGITMA--AISAVDIALWDLAGKALGVPVYKL 122
Query: 172 FGGVSNTITTDITIPI---VSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR 227
GG AAE A + GF LKLKVG ED+E +RA+R
Sbjct: 123 LGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALR 182
Query: 228 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
AV D ++DAN G+ +EA+ + L E G+ E+P+ DD EGL +
Sbjct: 183 EAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLE--WIEEPLPPDDLEGLRELRA---- 236
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
+AA ES + D +++++ D++ LA+V G+ AL+I A G +M+G
Sbjct: 237 ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAA--LAEGFGVMVG 294
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDP-----VLDGYEVSGAVYKFTNAR 400
VE +++ A HL+A L F DL+ PL L++D V + V G + +
Sbjct: 295 PHVEGPISLAAALHLAAALP--NFGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGP 352
Query: 401 GHG 403
G G
Sbjct: 353 GLG 355
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Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-47
Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 8/224 (3%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208
+AAV+MAL D K + +P++ L GG + + + + PAE AE A + + GF T
Sbjct: 45 KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTF 104
Query: 209 KLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
KLKVG++ D+ V+ A+R AV D+ +DAN G+ P++A+ L L ++G+ EQ
Sbjct: 105 KLKVGRDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLD--YVEQ 162
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL- 326
P+ DD EG ++ + ADES + D + + AD +NIK AK G L
Sbjct: 163 PLPADDLEGRAALA----RATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218
Query: 327 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 370
A ++ V A GL +M+G M+E+ L HL+A L
Sbjct: 219 KAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRAVTLP 262
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Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 6e-43
Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 32/311 (10%)
Query: 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAM 108
E + +PL PF + L++ E + + + G G+GE P T E TA
Sbjct: 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAW 60
Query: 109 VKASEACEVLKESPA-MALGSVFG---VVAGLL---PGHQFASQLKVRAAVEMALIDAVA 161
+LK+ + LG F V+ L G+ A +A +EMA+ D A
Sbjct: 61 -------HILKDYLLPLLLGREFSHPEEVSERLAPIKGNNMA-----KAGLEMAVWDLYA 108
Query: 162 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDI 220
K+ L + GG ++I ++I I E + +Y ++G+ +KLK+ D+
Sbjct: 109 KAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIKPGW--DV 166
Query: 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
E L+A+R PD + DAN Y + +L++L E G+ ++ EQP+ DD + H
Sbjct: 167 EPLKAVRERFPDIPLMADANSAYTLADI-PLLKRLDEYGL--LMIEQPLAADDL--IDH- 220
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 339
+ + K + DES +S +D +K ++ +INIK +VG L AL+I ++ + G
Sbjct: 221 AELQK-LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHG 279
Query: 340 LNLMIGGMVET 350
+ + GGM+E+
Sbjct: 280 IPVWCGGMLES 290
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NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-39
Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 30/342 (8%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKA 111
+++P P A + + V +R+ S+G VG GEA P P E +T A++
Sbjct: 10 VDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDR 69
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
A +L A +G+ ++ + G+ FA +AA+EMAL+DA + + +P+ L
Sbjct: 70 YLA-PLLIGRDATNIGAAMALLDRAVAGNLFA-----KAAIEMALLDAQGRRLGLPVSEL 123
Query: 172 FGGVSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLR 224
GG + + + S AEA E+ R + F KLK+G +D+ +
Sbjct: 124 LGGRVRD-SLPVAWTLASGDTERDIAEAEEMLEAGRHRRF---KLKMGARPPADDLAHVE 179
Query: 225 AIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
AI D S +D N+ + A+ L +L GV L EQPV R++ +GL +
Sbjct: 180 AIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLR-- 235
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ V + ADES D ++ + ADV ++K+AK G+ A ++ + A+G+ L
Sbjct: 236 --SRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIAL 293
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
G M+E+ + + HL A L F +L PLLL+ED +
Sbjct: 294 YGGTMLESSIGTAASAHLFATLPSLPFGCELFGPLLLAEDLL 335
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This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-35
Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 28/378 (7%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q E ++VP I P +AT+ + + V +RI +G +G+GE + + +
Sbjct: 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPE 60
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
+KA + VL A + ++ + ++ G++FA +AAV+ AL DA A+ +
Sbjct: 61 TIKANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRFA-----KAAVDTALHDAQARRL 115
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSP------AEAAELASKYRKQGFTTLKLKVGKN-LK 217
+P+ L GG + D+T + S AEA E + R + F KLK+G
Sbjct: 116 GVPVSELLGGRVRD-SVDVTWTLASGDTDRDIAEAEERIEEKRHRSF---KLKIGARDPA 171
Query: 218 EDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276
+D+ + AI +A+ +S +D N + + A+ L +L + GV L EQP ++ E
Sbjct: 172 DDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVE--LIEQPTPAENREA 229
Query: 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 335
L ++ +F V + ADES D I K + ADV +K K G+L + +I +
Sbjct: 230 LARLT----RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIA 285
Query: 336 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVY 394
A+G+ L G M+E + + H A F +L PLLL ++ + + +
Sbjct: 286 EAAGIALYGGTMLEGPIGTIASAHFFATFPALSFGTELFGPLLLKDEILTEPLQYEDFQL 345
Query: 395 KFTNARGHGGFLHWDNIA 412
G G + D +
Sbjct: 346 HLPQGPGLGVEVDEDKVN 363
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-29
Identities = 76/314 (24%), Positives = 131/314 (41%), Gaps = 26/314 (8%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQTAM--VKA 111
++ P +PF + L+ + + I + G G+GE A P T E T ++
Sbjct: 3 VSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIED 62
Query: 112 SEACEVLKE--SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ KE P+ AL V L G A +A +EMAL D K S L
Sbjct: 63 FFEPNINKEFEHPSEALELVRS-----LKGTPMA-----KAGLEMALWDMYHKLPSFSLA 112
Query: 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
G + + + + + + + G+ +KLK+ + ++++ R
Sbjct: 113 YGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKITPQI--MHQLVKLRRLR 170
Query: 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289
P ++DANE Y Q+ L++L + + E+P DD L +
Sbjct: 171 FPQIPLVIDANESYDLQD-FPRLKELDRYQL--LYIEEPFKIDDISMLDEL----AKGTI 223
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMV 348
+ DES SLDD + +++ VINIK ++G L + I+ + G + IGGM+
Sbjct: 224 TPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIDTCKEHGAKVWIGGML 283
Query: 349 ETRLAMGFAGHLSA 362
ET ++ F L++
Sbjct: 284 ETGISRAFNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 91/364 (25%), Positives = 156/364 (42%), Gaps = 36/364 (9%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
L P + V +R+ +G GWGEA A ++ A ++
Sbjct: 9 VLRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEAYP---GGRPSAVAAAIEDLLAPLLI 65
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLFGGVS 176
P + ++ + L + + + A AV++AL D K+ +P+++L GG
Sbjct: 66 GRDPL-DIERLWEKLYRRL-FWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKV 123
Query: 177 --------NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEV 222
+ D + P E AE A + +GFT +KLKVG ++L+ED+
Sbjct: 124 RDRVRVYASGGGYDDS-----PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLAR 178
Query: 223 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281
+RA+R AV PD ++DAN + EA+ + L E FE+PV DD EGL +
Sbjct: 179 VRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD--LFWFEEPVPPDDLEGLARL- 235
Query: 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 340
+ V +AA E+ + + + +++ D+I + KV G+ A +I + A G+
Sbjct: 236 ---RQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGV 292
Query: 341 NLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL-LSEDPVLDGYEVSGAVYKFTNA 399
+ G + + + HL+A L F ++ L L ED + E+ +
Sbjct: 293 RVAPHGA-GGPIGLAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDR 351
Query: 400 RGHG 403
G G
Sbjct: 352 PGLG 355
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-25
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 42/227 (18%)
Query: 148 VRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 207
V + ++MAL D AK++ +PL L GG +
Sbjct: 43 VISGIDMALWDLAAKALGVPLAELLGG--------------GSRDRVPAYGS-------- 80
Query: 208 LKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266
IE +RA+R A PD+ +DAN + P+EA+ ++ L + G E
Sbjct: 81 ------------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYG--LAWIE 126
Query: 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 325
+P DD EG + + G+ +AADES ++DD + ++ D++ IK +VG +
Sbjct: 127 EPCAPDDLEGYAALR----RRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGL 182
Query: 326 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL 372
+ ++ A G+ +M+ G +E+ + A HL+A L + I+
Sbjct: 183 TESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIET 229
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 100/325 (30%), Positives = 148/325 (45%), Gaps = 31/325 (9%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + +E G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN- 177
P + G + LLP R AV+ AL D A+ L +L G
Sbjct: 64 SVVPQLEKGLTREALQKLLPAG------AARNAVDCALWDLAARQQQQSLAQLIGITLPE 117
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+TT T+ I +P + A AS + G LK+K+ +L E + AIR+ PD++ I+
Sbjct: 118 TVTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLIS--ERMVAIRSAVPDATLIV 175
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++GV + EQP+ D L + H + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADES 227
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + +K + KG +++NIKL K G L AL + RA G LM+G M+ T A+
Sbjct: 228 CHTRSSLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISA 285
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSED 381
A L + +F DLD P L+ D
Sbjct: 286 ALPLVPQV---RFADLDGPTWLAVD 307
|
Length = 321 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-23
Identities = 83/315 (26%), Positives = 124/315 (39%), Gaps = 68/315 (21%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P ++PL P + RL + + +R+E G VGWGE
Sbjct: 4 YPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEI-------------------- 43
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
+P L + +E AL + A V R
Sbjct: 44 -------AP-----------------------LPLAFGIESALANLEALLVGFTRPR--- 70
Query: 174 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPD 232
N I + +P A E + Y G+ T+KLKVG + +ED+ LRA+R P
Sbjct: 71 ---NRIPVNALLPAGDAAALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPA 126
Query: 233 S-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
LDAN G+ +EA+ LE L + + EQP+ DD L + GV
Sbjct: 127 DAKLRLDANGGWSLEEALAFLEALAAGRIEYI--EQPLPPDDLAEL------RRLAAGVP 178
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350
+A DES R LDD + + +K A +G LE+ E RA G+ ++ +E+
Sbjct: 179 IALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALES 238
Query: 351 RLAMGFAGHLSAGLG 365
+ +G HL+A L
Sbjct: 239 SIGLGALAHLAAALP 253
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-21
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 190 PAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 247
P E AE A + + GF +K+KVG ED+ + A+R AV PD+ ++DAN + +E
Sbjct: 1 PEELAEAARRAVAEAGFRAVKVKVGGGPLEDLARVAAVREAVGPDADLMVDANGAWTAEE 60
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
A+ LE L E+G+ E+PV DD EGL +
Sbjct: 61 AIRALEALDELGLE--WIEEPVPPDDLEGLAELRR 93
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 7e-16
Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 23/241 (9%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG------WGEAPVLPHV 99
V + R +NVP+ P + + V I + G G + A +
Sbjct: 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFTYTPAALKSLK 60
Query: 100 TAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASQLKVRAAVEMALI 157
D A++ E AL F ++ GL A ++MA
Sbjct: 61 QLLDDMAALLVGEPLAPAELER---ALAKRFRLLGYTGL--------VRMAAAGIDMAAW 109
Query: 158 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NL 216
DA+AK +PL +L GG + + + A E A ++GF +K K+G
Sbjct: 110 DALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTA 169
Query: 217 KEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 275
ED+ V+R+IR AV ++D N+ EA+E + L + G+T + E+P + D+E
Sbjct: 170 DEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI--EEPTLQHDYE 227
Query: 276 G 276
G
Sbjct: 228 G 228
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-15
Identities = 78/317 (24%), Positives = 132/317 (41%), Gaps = 51/317 (16%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
V+R E R VP AP T D V + + + G G G T D A
Sbjct: 2 VERVEARAYTVPTDAPEADGTLAWDATTLVLVEVR-AGGRTGLG-------YTYADAAAA 53
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR------------AAVEMA 155
+ V++ A+ + A Q VR +AV++A
Sbjct: 54 ALVDGLLAPVVEGRDALDPPAA-----------WEAMQRAVRNAGRPGVAAMAISAVDIA 102
Query: 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--------SPAEAAELASKYRKQGFTT 207
L D A+ + +PL RL G +++ P+ E S + QG
Sbjct: 103 LWDLKARLLGLPLARLLGRAHDSV------PVYGSGGFTSYDDDRLREQLSGWVAQGIPR 156
Query: 208 LKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266
+K+K+G++ + D + + A R A+ PD+ +DAN Y ++A+ + + GVT FE
Sbjct: 157 VKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVT--WFE 214
Query: 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GV 325
+PV DD GL V + G+ +AA E +L +++++ + DV+ + + GV
Sbjct: 215 EPVSSDDLAGLRLVR--ERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGV 272
Query: 326 LGALEIIEVVRASGLNL 342
G L+ + A ++L
Sbjct: 273 TGFLQAAALAAAHHVDL 289
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 35/221 (15%)
Query: 184 TIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIR-AVHPDSSFILDA 239
T+P V A+ E+ +++ G T K+KV G+ L +D+ + A+R A+ PD +DA
Sbjct: 84 TVPAVDAAQVPEVLARF--PGCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDA 141
Query: 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVSVAADES 297
N G+ EAV L G + EQP V +A + + GV +AADES
Sbjct: 142 NGGWSVDEAVAAARALDADGPLEYV-EQPC--------ATVEELAELRRRVGVPIAADES 192
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357
R +D ++ + ADV +K+A +G G +++ GL +++ ++T + +
Sbjct: 193 IRRAEDPLRVARAGAADVAVLKVAPLG--GVRAALDIAEQIGLPVVVSSALDTSVGIAAG 250
Query: 358 GHLSA---------GLGCFKFI--DLDTPLLLSEDPVLDGY 387
L+A GL D+ PLL PV DG+
Sbjct: 251 LALAAALPELDHACGLATGGLFEEDVADPLL----PV-DGF 286
|
Length = 327 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 55/234 (23%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRL--------------FGGVSNTITTDITIPIVSPAEA- 193
AAV A+ D AK+ PLW+L F +++ +T + + I+ +
Sbjct: 111 TAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTPEEALEILRRGQPG 170
Query: 194 ------------------------------AELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
L + QGFT KLKVG +L++DI
Sbjct: 171 KAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC 230
Query: 224 RAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R R V PD+ ++DAN+ + EA+E +++L E P E+P DD LGH +
Sbjct: 231 RLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFK--PWWIEEPTSPDDI--LGHAA- 285
Query: 283 IAKD--KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 334
I K + VA E C++ K++++ DV+ I ++G G E + V
Sbjct: 286 IRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLG--GVNENLAV 337
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-13
Identities = 72/316 (22%), Positives = 118/316 (37%), Gaps = 39/316 (12%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+P AP L + E + +R+ G GWGE LP E + +A +
Sbjct: 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTET----LAEALD 55
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
C L E + G A + +VA L L
Sbjct: 56 FCRALIEE--------------ITRGDIEAID---------DQLPSVAFGFESALIELES 92
Query: 174 GVSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHP 231
G ++ + ++ + A L + K GF T K KVG L + ++ + P
Sbjct: 93 GDELPPASNYYVALLPAGDPALLLLRSAKAEGFRTFKWKVGVGELAREGMLVNLLLEALP 152
Query: 232 DSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFG 289
D + + LDAN G P EA + L+ L + F E+P+ D +S ++ G
Sbjct: 153 DKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPLPDAD-----EMSAFSEA-TG 206
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGAL-EIIEVVRASGLNLMIGGMV 348
++A DES L + + IK A +G L ++ + GL + +
Sbjct: 207 TAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVF 266
Query: 349 ETRLAMGFAGHLSAGL 364
E+ +A+G L+A L
Sbjct: 267 ESSIALGQLARLAAKL 282
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-12
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 353
ES SL D +++++ D+I + +V G+ AL+I + A G+ + GM E +
Sbjct: 1 GESLYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAPHGM-EGGIG 59
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEV 389
+ + HL+A L F ++ P LL +D + V
Sbjct: 60 LAASLHLAAALPNFDILEYV-PYLLPDDLLTGPPPV 94
|
This domain appears at the C-terminus of many of the proteins that carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746 domains. EC:4.2.1.40. Length = 111 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+ A+R AV PD +DAN + P+EA+ + L G+ E+P+ DD EGL +
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGLL--WIEEPLPPDDLEGLAEL 58
Query: 281 SHIAKDKFGVSVAAD 295
+ + +AA
Sbjct: 59 ----RRATPIPIAAG 69
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 33/257 (12%)
Query: 20 CQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQV--ENV 77
CQ A + +S + F + E + L AP T A+ Q E
Sbjct: 905 CQAAEHALGILSESSCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGF 964
Query: 78 AIRIELSNGCVGWGE-APVLPHVT----AEDQQTAMV------KASEACEVLKESPAMAL 126
+ + L +G VG+GE AP+ H E+Q ++ K S +LK S + +
Sbjct: 965 ILSLSLEDGSVGFGEVAPLEIHEEDLLDVEEQLRFLLHVIKGAKISFMLPLLKGSFSSWI 1024
Query: 127 GSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL---FGGVSNTITTDI 183
S G+ P F S VR +EMA+++A+A L + + N
Sbjct: 1025 WSELGIP----PSSIFPS---VRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSH 1077
Query: 184 TIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKNLK--EDIEVLRAIR-AVHPDS 233
++ I SP E A +A K ++GF+ +KLKVG+ + +D V++ +R AV
Sbjct: 1078 SVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQI 1137
Query: 234 SFILDANEGYKPQEAVE 250
DAN + +EA+E
Sbjct: 1138 ELRADANRNWTYEEAIE 1154
|
Length = 1655 |
| >gnl|CDD|239443 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 151 AVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA-EAAELASKYRKQGFTTL 208
AV++AL D + K P+++L GG + I + + E + A +Y K+G+ +
Sbjct: 80 AVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGM 139
Query: 209 KLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260
K++ G L++++E++RAIR AV D +LD + A+++ L +
Sbjct: 140 KMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYE- 198
Query: 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
E+P+ DD EG + G+ ++ E ++ K++++G D++
Sbjct: 199 -LRWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDIL 249
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 341 |
| >gnl|CDD|239445 cd03329, MR_like_4, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRK 202
V++AL D K + +P+ RL GG ++T+ D + SP A+ A + +
Sbjct: 97 GLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEECKA 156
Query: 203 QGFTTLKLK--VGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
G+ +KL ++ D++ A+R AV PD + D Y +A+ + L E+G
Sbjct: 157 LGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELG 216
Query: 260 VTPVLFEQP 268
+E P
Sbjct: 217 FF--WYEDP 223
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 368 |
| >gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 48/272 (17%)
Query: 77 VAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS-------- 128
+ ++IE G VGWGE V + + V+A+ ++E +G
Sbjct: 15 LFVKIETDEGVVGWGEPTV-------EGKARTVEAA-----VQELEDYLIGKDPMNIEHH 62
Query: 129 -----VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTD 182
G G G S + + ++ AL D K + +P+ +L GG V + +
Sbjct: 63 WQVMYRGGFYRG---GPVLMSAI---SGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVY 116
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLK---------LKVGKNLKEDIEVLRAIR-AVHPD 232
I P++ AE A R+ GFT +K + K + +E + A+R AV PD
Sbjct: 117 SWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPD 176
Query: 233 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292
+D + A ++ ++L + E+PV ++ E L ++ + + +
Sbjct: 177 IDIGVDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIA----ARTTIPI 230
Query: 293 AADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
A E S D K++++ D+I ++ G
Sbjct: 231 ATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 352 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 67/318 (21%), Positives = 121/318 (38%), Gaps = 42/318 (13%)
Query: 53 NRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKA 111
RP PL + R E + +R+ G +GWGE AP LP +E + A+
Sbjct: 11 QRPFRQPLQTAHGLWRIR----EGIILRLTDETGKIGWGEIAP-LPWFGSETLEEAL--- 62
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW-R 170
C+ L +F + L P QF +A+E +++ +
Sbjct: 63 -AFCQQLPGEITPE--QIFSIPDAL-PACQFG----FESALENESGSRSNVTLNPLSYSA 114
Query: 171 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRA-IRA 228
L + A + +QG+ T K K+G L++++++ +
Sbjct: 115 LLP---------------AGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLER 159
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDK 287
+ + LDAN G +EA L+ + F EQP+ D ++ + +S
Sbjct: 160 LPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLS----QD 215
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347
+ +A DES +L +++ + + IK A G L + + L+ + +
Sbjct: 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRLR--QFCQQHPLDAVFSSV 273
Query: 348 VETRLAMGFAGHLSAGLG 365
ET + A L+A L
Sbjct: 274 FETAIGRKAALALAAELS 291
|
Length = 320 |
| >gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 65/254 (25%)
Query: 151 AVEMALIDAVAKSVSMPLWRLFGGVSNTIT-----------------TDITIPIVSPAEA 193
V +A+ A A S+ +PL+R GG++ + DI ++ P A
Sbjct: 112 GVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGA 171
Query: 194 AELASKYRK--QGFTTLK--LK-------VG------KNLKEDIEVL----RAIRAVH-- 230
R + F LK LK VG NLK + E L AI
Sbjct: 172 ESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYE 231
Query: 231 --PDSSFILD--ANEGYK------------PQEAVEVLEKL---YEMGVTPVLFEQPVHR 271
D + LD A+E YK +E +E +L Y + V E P+
Sbjct: 232 PGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI----VSIEDPLSE 287
Query: 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALE 330
DDWEG ++ DK + V D + +KK ++ A+ I IK ++G L LE
Sbjct: 288 DDWEGFAELTKRLGDKVQI-VGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLE 346
Query: 331 IIEVVRASGLNLMI 344
I + + +G +I
Sbjct: 347 AINLAKDAGYTAVI 360
|
Length = 423 |
| >gnl|CDD|217212 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-05
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
+ P +A + Q V +RIE S G VG GEA T+ + +KA +
Sbjct: 10 GWPLRPIQMAFGTVQQQSLVIVRIETSEGVVGIGEA------TSYGGRAETIKA----IL 59
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFASQ-----LKVRAAVEMALIDAVAKSVSMPLWRLF 172
+ +G ++ L Q + + +AA++MAL D AK +++PL L
Sbjct: 60 DDHLAPLLIGRDAANISDLW---QLMYRAALGNMSAKAAIDMALWDLKAKVLNLPLADLL 116
Query: 173 G 173
G
Sbjct: 117 G 117
|
SCOP reports fold similarity with enolase N-terminal domain. Length = 117 |
| >gnl|CDD|239438 cd03322, rpsA, The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTI------TTDITIPIVSPAEAAELASKYRKQ 203
AAV+MAL D K+ MPL++L GG S + IP E E ++ Q
Sbjct: 86 AAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIP-----ELLEAVERHLAQ 140
Query: 204 GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVE 250
G+ +++++ K + A+R +L D + P +A
Sbjct: 141 GYRAIRVQLPK-------LFEAVREKFGFEFHLLHDVHHRLTPNQAAR 181
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. Length = 361 |
| >gnl|CDD|239442 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 38/239 (15%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS------PAE-----AAELAS 198
A++MA+ DAVAK +PL+RL D +P+ + P + E+
Sbjct: 111 GALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDDLGRLRDEMRR 170
Query: 199 KYRKQGFTTLKLKVG-KNLKEDIE-VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLY 256
Y +G+T +K+K+G L ED+ + A+ + + +DAN + + A+ + L
Sbjct: 171 -YLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALA 229
Query: 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK-GNLA-- 313
G+ +E+P D+ ++ D + +A E+ SL D + +++ G +
Sbjct: 230 PYGL--RWYEEPGDPLDYALQAELA----DHYDGPIATGENLFSLQDARNLLRYGGMRPD 283
Query: 314 -DVINIKLA-KVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL-----SAGLG 365
DV+ G+ L +++V+ A G + R GHL +AGLG
Sbjct: 284 RDVLQFDPGLSYGLPEYLRMLDVLEAHGWS--------RRRFFPHGGHLMSLHIAAGLG 334
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 385 |
| >gnl|CDD|239439 cd03323, D-glucarate_dehydratase, D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 51/216 (23%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQT--AMVKASEACEVLKESPAM--ALGSVFGVVA 134
+ + NG G GE+P + A+++A+ + A L SV A
Sbjct: 33 VELTDDNGNTGVGESP-------GGAEALEALLEAARSLVGGDVFGAYLAVLESVRVAFA 85
Query: 135 ------GLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-------------- 174
L + + V A E+AL+D + +++ +P+ L GG
Sbjct: 86 DRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFY 145
Query: 175 VSNTITTDITIP--------------IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED- 219
+ TD+ P +V A AA + GF + KLK G E+
Sbjct: 146 KGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAA-----IDRYGFKSFKLKGGVLPGEEE 200
Query: 220 IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 255
IE ++A+ P + LD N + + A+ + ++L
Sbjct: 201 IEAVKALAEAFPGARLRLDPNGAWSLETAIRLAKEL 236
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 395 |
| >gnl|CDD|184455 PRK14017, PRK14017, galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 74/300 (24%), Positives = 123/300 (41%), Gaps = 68/300 (22%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS--EACEVL-KESPA--------MALG 127
++IE G VGWGE PV+ + + V+A+ E + L + P M G
Sbjct: 18 LKIETDEGIVGWGE-PVV------EGRARTVEAAVHELADYLIGKDPRRIEDHWQVMYRG 70
Query: 128 SVF--GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT 184
+ G + S + A ++ AL D K++ +P+ L GG V + I
Sbjct: 71 GFYRGGPI--------LMSAI---AGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSW 119
Query: 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK---------EDIEVLRAIR-AVHPDSS 234
I PA+ AE A ++GFT +K+ + L+ + + A+R AV P+
Sbjct: 120 IGGDRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIG 179
Query: 235 FILDANEG--YKPQEAV--EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290
+D + G +KP V + LE M + E+PV ++ E L ++ +
Sbjct: 180 IGVDFH-GRVHKPMAKVLAKELEPYRPMFI-----EEPVLPENAEALPEIAAQT----SI 229
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 350
+A E S D K++++ D+I L+ G G I E + I M E
Sbjct: 230 PIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG--G---ITECRK-------IAAMAEA 277
|
Length = 382 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 100.0 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.92 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.9 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.87 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.87 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.87 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.79 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.67 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.66 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.56 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.36 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 99.26 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.06 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.05 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.79 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 98.7 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.65 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.59 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.78 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.56 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.34 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 97.13 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 97.01 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.93 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.92 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.89 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.79 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.78 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.78 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.75 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.74 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 96.56 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 96.47 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.44 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.36 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.12 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 95.92 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.89 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 95.87 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 95.67 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.45 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 95.29 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 95.04 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 94.99 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 94.9 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.52 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.4 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.35 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.94 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.7 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.4 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 93.27 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 92.93 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 92.79 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 92.27 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 92.14 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.66 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 91.63 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 91.52 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 91.52 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 91.23 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.17 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 90.81 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 90.62 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 90.62 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 90.54 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 90.48 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 90.47 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 90.35 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 90.16 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 90.15 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 90.08 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 90.06 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 90.03 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 90.03 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.98 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 89.97 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 89.77 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 89.73 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 89.65 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 89.63 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 89.58 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 89.5 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 89.48 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.98 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 88.95 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 88.87 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 88.82 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 88.58 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 88.43 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 88.02 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 87.82 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 87.8 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 87.8 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 87.31 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 87.31 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 87.24 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 87.24 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 87.1 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 87.03 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 87.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 86.79 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 86.77 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 86.76 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 86.66 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 86.43 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 86.35 | |
| cd06660 | 285 | Aldo_ket_red Aldo-keto reductases (AKRs) are a sup | 86.35 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 86.32 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 86.27 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 86.06 | |
| PLN02591 | 250 | tryptophan synthase | 86.03 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 85.68 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 85.67 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 85.55 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 85.17 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 84.73 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 84.71 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 84.66 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 84.58 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 84.57 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 84.54 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 84.51 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 84.32 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 83.99 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 83.9 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 83.89 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.75 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 83.74 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 83.72 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 83.58 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 83.5 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 83.23 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 82.92 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 82.55 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 82.43 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 82.32 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 82.16 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 82.07 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 81.8 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 81.79 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 81.74 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 81.34 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 81.32 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 81.31 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 81.24 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 80.98 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 80.85 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 80.72 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 80.71 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 80.68 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 80.44 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 80.32 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 80.25 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 80.2 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 80.07 |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=548.51 Aligned_cols=354 Identities=25% Similarity=0.399 Sum_probs=317.4
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHH-HHhHHHcCCCCC
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (412)
|++|+++++++|++.||+++.++...++.++|||+|++|++||||+.+. |.+++++...+...++ .++|.++|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999865 4566666555445554 589999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH-H
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-K 202 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~-~ 202 (412)
+++.+++.+.+.+.++. .+++|||+||||++||.+|+|+|+||||. ++++|+|++++..++++..+.++++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~-----~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
T TIGR02534 81 EIAAIMADLEKVVAGNR-----FAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEE 155 (368)
T ss_pred hHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 99999988877554332 27999999999999999999999999996 67899999888777766556666655 5
Q ss_pred cCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 203 QGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 203 ~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
+||++||+|+| .++++|+++|+++|++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 156 ~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l 233 (368)
T TIGR02534 156 KRHRSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARL 233 (368)
T ss_pred cCcceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHH
Confidence 89999999998 4788999999999997 7899999999999999999999999999987 499999999999999998
Q ss_pred HHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|
T Consensus 234 ~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h 309 (368)
T TIGR02534 234 TR----RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAH 309 (368)
T ss_pred HH----hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHH
Confidence 75 68899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 360 LSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 360 laaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++++++.+ .|+++++.+.++++.++++++||++++|++||||+++|++.++
T Consensus 310 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~ 363 (368)
T TIGR02534 310 FFATFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVN 363 (368)
T ss_pred HHHhCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHH
Confidence 9999999877 5777776666788888899999999999999999999998763
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-70 Score=546.39 Aligned_cols=355 Identities=26% Similarity=0.396 Sum_probs=321.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHH-HHhHHHcCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
||++++++++++|++.||.++.++.+.++.++|||+|++|++||||+.+.+ .+++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998653 455666555555555 47899999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+++.|++...++. .+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.++++++++
T Consensus 81 ~~~~~~~~~l~~~~~~~~-----~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (365)
T cd03318 81 TNIGAAMALLDRAVAGNL-----FAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLE 155 (365)
T ss_pred HHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHh
Confidence 999999999877544432 37899999999999999999999999996 678999998887788888888888999
Q ss_pred cC-CCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 203 QG-FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 203 ~G-f~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+| |++||+|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~G~f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~ 233 (365)
T cd03318 156 AGRHRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLAR 233 (365)
T ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHH
Confidence 99 9999999994 788999999999998 6799999999999999999999999999997 49999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+++++.++++
T Consensus 234 l~~----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~ 309 (365)
T cd03318 234 LRS----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASA 309 (365)
T ss_pred HHh----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHH
Confidence 975 68899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 359 HLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 359 hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
|+++++++..+ .|+++++.+.+|++.++++++||++.+|++||||+++|++.++
T Consensus 310 hlaaa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~ 364 (365)
T cd03318 310 HLFATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVR 364 (365)
T ss_pred HHHHhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhc
Confidence 99999998777 6777776666788888889999999999999999999999875
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=525.28 Aligned_cols=346 Identities=25% Similarity=0.409 Sum_probs=309.0
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCCCCCHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (412)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. +++++|+...+...+++ +.|.++|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5788999999999999999999999999999999999999999864 56777877666666654 78999999999999
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCH-HHHHHHHHHHHHcCCC
Q 015161 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFT 206 (412)
Q Consensus 128 ~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~Gf~ 206 (412)
.+++.+.+ +.++. .+++||||||||++||.+|+|+|+||||.++++|+|.+++..++ +++.+++++++++||+
T Consensus 81 ~~~~~~~~-~~~~~-----~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~ 154 (354)
T cd03317 81 EVSERLAP-IKGNN-----MAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYK 154 (354)
T ss_pred HHHHHHHH-hcCCh-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCc
Confidence 99998876 34432 37999999999999999999999999998889999999887765 8889999999999999
Q ss_pred EEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 207 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 207 ~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
+||+|++. +.|+++|+++|++.+++.|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++
T Consensus 155 ~~KiKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~---- 225 (354)
T cd03317 155 RIKLKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK---- 225 (354)
T ss_pred EEEEecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----
Confidence 99999974 689999999999866999999999999999985 8999999997 49999999999999999975
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++ +++
T Consensus 226 ~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~ 304 (354)
T cd03317 226 LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLP 304 (354)
T ss_pred hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCC
Confidence 68899999999999999999999999999999999998 9999999999999999999999999999999999996 567
Q ss_pred CCcee-cccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 366 CFKFI-DLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 366 ~~~~~-e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+..+. +++... .+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~ 353 (354)
T cd03317 305 NFTYPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALK 353 (354)
T ss_pred CCCCccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhc
Confidence 76553 444322 355788777899999999999999999999999874
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-68 Score=525.89 Aligned_cols=343 Identities=22% Similarity=0.303 Sum_probs=296.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (412)
||++++++.+++|++.||..+..++..++.++|||+| +|++||||+. +.++....+ .+.+.|.|+|+|+.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999997666656678899999997 7999999853 223322222 1357899999999999
Q ss_pred HHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHHHHc
Q 015161 127 GSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 203 (412)
Q Consensus 127 ~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~ 203 (412)
+.+|+.|++...++. ......|++||||||||++||.+|+|||+||||.++++|+|++.+. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 999999977432111 1112358999999999999999999999999998889999988653 3678899999999999
Q ss_pred CCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHH
Q 015161 204 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282 (412)
Q Consensus 204 Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~ 282 (412)
||++||+|+|.++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999997 49999999999999999975
Q ss_pred Hhhcc--cCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 283 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 283 ~~~~~--~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
+ +++||++||++++..+++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999998 99999999999999999999974 358899
Q ss_pred HHccCCCCceecccCCc-ccccCCCCCceeeeCcEEeeCC-CCCcccccCCC
Q 015161 360 LSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWD 409 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~-~pGlG~~ld~~ 409 (412)
+++++||+.+.|+..+. .+.++++.++++++||++.+|+ +||||+++||.
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~~ 352 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRAR 352 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCCC
Confidence 99999998888865432 2335666777889999999987 79999999983
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-68 Score=526.82 Aligned_cols=347 Identities=20% Similarity=0.263 Sum_probs=302.7
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 69999999999999999999999998889999999999999999999643 3455554444445668999999975 5
Q ss_pred HHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHc
Q 015161 126 LGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ 203 (412)
Q Consensus 126 ~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 203 (412)
.+.+++.+.+.. .++.. ....|++||||||||++||.+|+|||+||||..+++|+|.+++..+++++.+++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~ 155 (355)
T cd03321 77 PAELERALAKRFRLLGYTG-LVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEE 155 (355)
T ss_pred hHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHh
Confidence 677776665532 12211 123589999999999999999999999999988899999998888889999999999999
Q ss_pred CCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 204 GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 204 Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
||++||+|+| .++++|+++++++|++ +|++.|++|+|++|++++|++++++|+++++ .|||||++++|+++|++|+
T Consensus 156 Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~ 233 (355)
T cd03321 156 GFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIA 233 (355)
T ss_pred hhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHH
Confidence 9999999998 4788999999999997 7899999999999999999999999999997 4999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ..++|+
T Consensus 234 ~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~------~~~~h~ 303 (355)
T cd03321 234 S----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ------EISAHL 303 (355)
T ss_pred H----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH------HHHHHH
Confidence 5 68899999999999999999999999999999999998 999999999999999999999852 247899
Q ss_pred HccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+++++++.++|+.. +..+++..+++++||++++|++||||+++|+++++
T Consensus 304 ~aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 352 (355)
T cd03321 304 LAVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVR 352 (355)
T ss_pred HHhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHH
Confidence 99999988877421 22345567789999999999999999999998763
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=522.87 Aligned_cols=348 Identities=18% Similarity=0.230 Sum_probs=298.4
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC-CC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (412)
||++|+++++.+|++.||+++.++...++.++|||+|++|++||||++.. .+... .+..++|.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999887767789999999999999999997531 12222 33567888888877 57
Q ss_pred HHHHHHHHHhhcC--CCc--c------hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec--------
Q 015161 126 LGSVFGVVAGLLP--GHQ--F------ASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 186 (412)
Q Consensus 126 ~~~~~~~l~~~~~--g~~--~------~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-------- 186 (412)
.+.+|+.|++... ++. . .....|++||||||||++||.+|+|||+||||. ++++|+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 8889999876532 111 0 112468999999999999999999999999996 77999997642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 015161 187 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 187 -------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|++.|++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 2477888888988875 699999999994 6789999999999987899999999999999999999
Q ss_pred HHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHH
Q 015161 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 330 (412)
Q Consensus 252 ~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~ 330 (412)
+++|++ ++. |||||++ |+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++|
T Consensus 233 ~~~l~~-~l~--~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VLA--YLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CCC--EEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 874 9999998 8999999975 67899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCC
Q 015161 331 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409 (412)
Q Consensus 331 i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~ 409 (412)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.++++++||++++|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999999775 3432232223345557788999999999999999999998
Q ss_pred CC
Q 015161 410 NI 411 (412)
Q Consensus 410 ~~ 411 (412)
.+
T Consensus 384 ~l 385 (395)
T cd03323 384 KL 385 (395)
T ss_pred HH
Confidence 76
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=518.78 Aligned_cols=340 Identities=18% Similarity=0.217 Sum_probs=290.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (412)
|||++|+++.+ .| .++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-----~~---------~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-----CP---------GRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-----CC---------CCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999754 11 135689999999999999998532 1221 122233 4589999999999
Q ss_pred CHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 125 ALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 125 ~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+++.+|+.|++.. .++.. ...|++||||||||++||.+|+|||+||||. ++++++|.+....+++++.+++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~--~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~ 139 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPV--TMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHL 139 (404)
T ss_pred HHHHHHHHHHHhcccCCchH--HHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999997632 11211 2358999999999999999999999999996 67899987654557888889999999
Q ss_pred HcCCCEEeEecCC-C----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 015161 202 KQGFTTLKLKVGK-N----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKP 245 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-~----------------------------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~ 245 (412)
++||++||+|+|. . ++.|+++|+++|++ +|++.|++|+|++|++
T Consensus 140 ~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~ 219 (404)
T PRK15072 140 ELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTP 219 (404)
T ss_pred HcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCH
Confidence 9999999999972 1 13457899999997 7899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++|++++++|+++++. |||||++++|+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++|
T Consensus 220 ~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GG 293 (404)
T PRK15072 220 IEAARLGKSLEPYRLF--WLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGG 293 (404)
T ss_pred HHHHHHHHhccccCCc--EEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCc
Confidence 9999999999999974 9999999999999999975 68899999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG 403 (412)
++++++++++|+++|+++++|++. +|+++.++++|+++++||+.++|+..+..+.++++..++.++||++++|++||||
T Consensus 294 it~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLG 373 (404)
T PRK15072 294 ITHLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLG 373 (404)
T ss_pred HHHHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCC
Confidence 999999999999999999999875 6999999999999999998888876543344677777889999999999999999
Q ss_pred cccCCCCCC
Q 015161 404 GFLHWDNIA 412 (412)
Q Consensus 404 ~~ld~~~~~ 412 (412)
+++|+++++
T Consensus 374 i~~d~~~l~ 382 (404)
T PRK15072 374 VDFDEKLAA 382 (404)
T ss_pred eeECHHHHh
Confidence 999998763
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=511.82 Aligned_cols=343 Identities=20% Similarity=0.261 Sum_probs=295.4
Q ss_pred EEeEEEEEEEEeccccceec----cCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~----a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
||++|+++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . . ......+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~--~~~~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---T--DPALVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---h--HHHHHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 1 11112245899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC-------CCHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAE 195 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-------~~~~~~~~ 195 (412)
+.+++.+|+.|.+.+.+.. ..|++||||||||++||.+|+|||+||||.++++|+|++++. .+++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~----~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~ 149 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT----DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYAD 149 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc----hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHH
Confidence 9999999999987655432 137999999999999999999999999998889999987633 37889999
Q ss_pred HHHHHHHcCCCEEeEecCCC--hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~--~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.+++++++||++||+|+|.+ ++.|+++++++|++ |+++.|++|+|++|+.++|++++++|+++++. |+|||++++
T Consensus 150 ~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~ 227 (368)
T cd03329 150 FAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREA 227 (368)
T ss_pred HHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCch
Confidence 99999999999999998743 68899999999997 79999999999999999999999999999874 999999999
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
|++++++|++ ++++||++||++++ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 228 d~~~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~--- 300 (368)
T cd03329 228 SISSYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN--- 300 (368)
T ss_pred hHHHHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh---
Confidence 9999999874 68899999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHHHHccCCCCceecc--cCCcccccCC-----CCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 351 RLAMGFAGHLSAGLGCFKFIDL--DTPLLLSEDP-----VLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~~~~~e~--~~p~~~~~d~-----~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
.++++|++++++|+.+.|. +.|.....++ ..+++.++||++.+|++||||+++|++.++
T Consensus 301 ---~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 366 (368)
T cd03329 301 ---GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIE 366 (368)
T ss_pred ---HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHh
Confidence 4688999999999988874 3333221111 123455689999999999999999999864
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=511.18 Aligned_cols=336 Identities=19% Similarity=0.245 Sum_probs=285.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++. + ..++|||+|++|++||||+.... +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 799999998762 1 23889999999999999986421 2222 2223456899999999999
Q ss_pred HHHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 126 ~~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
++.+++.|+.. .++... ...|++||||||||++||.+|+|||+||||+ ++++|+|.+++..+++++.++++++++
T Consensus 60 ~~~~~~~l~~~~~~~~~~~--~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~ 137 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPI--LMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVE 137 (382)
T ss_pred HHHHHHHHHHhcccCCchH--HhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHH
Confidence 99999998653 222211 1358999999999999999999999999996 679999988777789999999999999
Q ss_pred cCCCEEeEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 203 QGFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 203 ~Gf~~~KiKvG~---------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
+||++||+|+|. ++++|+++|+++|+. +|++.|++|+|++|+.++|++++++|+++++. |||||++++
T Consensus 138 ~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~ 215 (382)
T PRK14017 138 RGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPE 215 (382)
T ss_pred cCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcC
Confidence 999999999963 357899999999997 78999999999999999999999999999974 999999999
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
|+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +
T Consensus 216 d~~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~ 290 (382)
T PRK14017 216 NAEALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-P 290 (382)
T ss_pred CHHHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-H
Confidence 9999999975 68899999999999999999999999999999999998 9999999999999999999999865 8
Q ss_pred HHHHHHHHHHccCCCCceeccc--CCccccc---CCCC--CceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 352 LAMGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 352 i~~~a~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++++++|++++++++.+.|.. ..+...+ +.+. .+++++||++++|++||||+++|+|+|
T Consensus 291 i~~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 291 IALAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 9999999999999987665532 1111111 1222 467889999999999999999999876
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=500.79 Aligned_cols=343 Identities=26% Similarity=0.375 Sum_probs=301.9
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (412)
||++|+++++++|++.| .++...++.++|||+|++|++||||+.+.+. .++ ....+++ +.|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5556678999999999999999999987542 222 2334454 899999999999
Q ss_pred HHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCC--CHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 201 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~--~~~~~~~~~~~~~ 201 (412)
++.+++.|++...++. ......+++|||+||||++||.+|+|||+||||. ++++|+|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987543321 1112358999999999999999999999999998 7899999987665 6888999999999
Q ss_pred HcCCCEEeEecCCC------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 202 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
++||+.||+|+|.+ ++.|+++|+++|++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|+
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999964 68999999999997 7899999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999975 67899999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccc
Q 015161 354 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 405 (412)
Q Consensus 354 ~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ 405 (412)
.++++|++++++++.++|++.+. .+..+++.+++.++||++.+|++||||++
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999999999987653 23445677788999999999999999985
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-64 Score=501.05 Aligned_cols=339 Identities=20% Similarity=0.257 Sum_probs=284.6
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECC---C--cEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCC
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~---G--~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (412)
++++.+++|+++||.++.+++..++.++|||+||+ | ++||||+.. ++.... ..+ +.+.|.|+|+||.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-----~~~~~~--~~i~~~~~p~LiG~dp~ 75 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-----GRYAQG--GLLRERFIPRLLAAAPD 75 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-----CchhHH--HHHHHHHHHHhcCCChH
Confidence 56778889999999999999999999999999999 9 999999862 112111 123 4488999999998
Q ss_pred ----------CHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CCeeeeceeec
Q 015161 125 ----------ALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP 186 (412)
Q Consensus 125 ----------~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~ 186 (412)
+++.+|+.|+... .++.. ...|+|||||||||++||.+|+|||+||||. ++++|+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~ 153 (385)
T cd03326 76 SLLDDAGGNLDPARAWAAMMRNEKPGGHGE--RAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGG 153 (385)
T ss_pred HhhhcccccCCHHHHHHHHHhcCccCCCCH--HHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecC
Confidence 4499999996632 22221 2358999999999999999999999999985 36899998754
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 187 ----IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 187 ----~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
..+++++.+++++++++||++||+|+|. +++.|+++|+++|++ +|++.|++|+|++|+.++|+++++.|+++++
T Consensus 154 ~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~ 233 (385)
T cd03326 154 YYYPGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL 233 (385)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3467888899999999999999999984 788999999999997 7999999999999999999999999999997
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEecCCCCc-HHHHHHHHHHH
Q 015161 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 261 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~----d~v~ik~~~~G-it~~l~i~~~A 335 (412)
. |||||++++|+++|++|++ ++++||++||+++++.+++++++.+++ |++|+|++|+| +|++++++++|
T Consensus 234 ~--~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA 307 (385)
T cd03326 234 R--WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVL 307 (385)
T ss_pred C--EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHH
Confidence 4 9999999999999999975 688999999999999999999999887 99999999997 99999999999
Q ss_pred HHcCCc---EEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 336 RASGLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 336 ~~~gi~---~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|++ +++|+ +..+++|+++++++ .++|....+.-..+.+.++++++||++.+|++||||+|+|++.+
T Consensus 308 ~a~gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 308 EAHGWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred HHcCCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 999998 77775 34688999999885 23332211110112334667889999999999999999999875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-64 Score=499.59 Aligned_cols=332 Identities=17% Similarity=0.194 Sum_probs=283.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (412)
||++|+++.. . |. ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~----~~---------~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-C----PG---------RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-C----CC---------CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999644 2 21 246899999999999999985321 1222 223344 4899999999999
Q ss_pred HHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 126 ~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
++.+|+.|+... .++. ....|++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~--~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~ 139 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGP--VTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLA 139 (361)
T ss_pred HHHHHHHHHHhcccCCch--HHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999986632 2111 12358999999999999999999999999996 678999977666678888899999999
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
+||++||+|+ +++|+++|++ ++++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|+
T Consensus 140 ~Gf~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~ 210 (361)
T cd03322 140 QGYRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIR 210 (361)
T ss_pred cCCCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHH
Confidence 9999999998 8899999997 78999999999999999999999999999984 999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGH 359 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~h 359 (412)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|
T Consensus 211 ~----~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~ 286 (361)
T cd03322 211 Q----HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALH 286 (361)
T ss_pred h----cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHH
Confidence 5 67899999999999999999999999999999999998 999999999999999999999987 69999999999
Q ss_pred HHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 360 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++++++.+.|+........+++.+++.++||++++|++||||+++|+|+++
T Consensus 287 laa~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~ 339 (361)
T cd03322 287 LDLWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAA 339 (361)
T ss_pred HHhhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHh
Confidence 99999987766653221223466777889999999999999999999999763
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=495.43 Aligned_cols=331 Identities=20% Similarity=0.273 Sum_probs=282.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (412)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|.++|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 246899999999999999997521 22332 2234568999999999999
Q ss_pred HHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHc
Q 015161 127 GSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 203 (412)
Q Consensus 127 ~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 203 (412)
+.+++.|... ..++.. ...+++||||||||++||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~--~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 137 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPV--LMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREA 137 (352)
T ss_pred HHHHHHHHHhcCcCCcch--hhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999998653 222211 1248999999999999999999999999995 6789999888777888888999999999
Q ss_pred CCCEEeEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 204 GFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 204 Gf~~~KiKvG~---------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
||++||+|+|. +++.|+++|+++|++ +|++.||+|+|++|++++|+++++.|+++++. |||||++.+|
T Consensus 138 Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d 215 (352)
T cd03325 138 GFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPEN 215 (352)
T ss_pred CCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccC
Confidence 99999999983 467899999999997 79999999999999999999999999999975 9999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|++
T Consensus 216 ~~~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i 290 (352)
T cd03325 216 VEALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPI 290 (352)
T ss_pred HHHHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChH
Confidence 999999975 68899999999999999999999999999999999998 99999999999999999999997 8999
Q ss_pred HHHHHHHHHccCCCCceeccc--CCccccc----CCCC-CceeeeCcEEeeCCCCCcccccC
Q 015161 353 AMGFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+.++++|++++++++.+.|+. .++...+ +++. .+++++||++.+|++||||+++|
T Consensus 291 ~~~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 291 ALAASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 999999999999987765532 2221111 1333 57889999999999999999987
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-63 Score=488.91 Aligned_cols=321 Identities=19% Similarity=0.275 Sum_probs=273.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (412)
||++|+.+. ..++|||+|++|++||||+.+. . .. ...+ +.+.|.|+|+++.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 688888753 2589999999999999998431 1 11 1223 45899999999999
Q ss_pred HHHHHHHHHhhcC--CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec-CCCHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-IVSPAEAAELASKYR 201 (412)
Q Consensus 126 ~~~~~~~l~~~~~--g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-~~~~~~~~~~~~~~~ 201 (412)
++.+|+.|++... ++.. ....|++||||||||++||.+|+|||+||||. ++++|+|++.. ..+++++.+++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~-~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~ 132 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKG-IAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYL 132 (341)
T ss_pred HHHHHHHHHhhccccCCcc-HHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999976421 2111 12358999999999999999999999999996 56899998753 458888899999999
Q ss_pred HcCCCEEeEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 202 KQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
++||++||+|+|. +++.|+++++++|++ +|++.|++|+|++|++++|++++++|+++++. |||||++++|
T Consensus 133 ~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~d 210 (341)
T cd03327 133 KEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELR--WIEEPLIPDD 210 (341)
T ss_pred HcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCc--cccCCCCccC
Confidence 9999999999973 357899999999997 78999999999999999999999999999974 9999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 211 ~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~----- 281 (341)
T cd03327 211 IEGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS----- 281 (341)
T ss_pred HHHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH-----
Confidence 999999975 68999999999999999999999999999999999998 99999999999999999999973
Q ss_pred HHHHHHHHHccCCCCceecccCCc--c----cccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 353 AMGFAGHLSAGLGCFKFIDLDTPL--L----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~~e~~~p~--~----~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
.++++|++++++|+.+.|+..+. . +.++++.+++.++||++++|++||||+++|
T Consensus 282 -~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 -QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred -HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 45889999999998887754211 0 124566677888999999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=493.94 Aligned_cols=345 Identities=20% Similarity=0.236 Sum_probs=277.5
Q ss_pred eEEeEEEEEEEEeccccceeccCc--eeeeeeEEEEEEEECC-CcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~--~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
+||++|+++.+++|++.|+..+.+ .....+.++|||+||+ |++||||+.+.. +........++.++|.++|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~----~~~~~~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIG----RGNEIVCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCC----CchHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999855433 3334578999999999 999999986421 121212223356899999999
Q ss_pred CCCHHHHHHHHHhhcC--------CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC------------------
Q 015161 123 AMALGSVFGVVAGLLP--------GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS------------------ 176 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~--------g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~------------------ 176 (412)
+.+++.+++.+.+.+. +........|+|||||||||++||.+|+|||+||||..
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988554444433221 11111123589999999999999999999999999932
Q ss_pred ------------------------Ceeeeceee-c--CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh
Q 015161 177 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229 (412)
Q Consensus 177 ------------------------~~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~ 229 (412)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.+++.|+++++++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467777542 2 2477888999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc---CCeEEeCCCCCCHHHHH
Q 015161 230 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 305 (412)
Q Consensus 230 -~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~---~ipIa~dEs~~~~~~~~ 305 (412)
||++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|++ ++ ++||++||++++..+++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~--~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPW--WIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCCC--EEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 79999999999999999999999999999974 9999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc---------CCCCceecccCC
Q 015161 306 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG---------LGCFKFIDLDTP 375 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa---------~~~~~~~e~~~p 375 (412)
++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++. .++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 56666666654332 1221 333211
Q ss_pred cccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 376 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 376 ~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
...+++.++++++||++.+|++||||+++.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 123455677899999999999999999873
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=489.08 Aligned_cols=351 Identities=28% Similarity=0.402 Sum_probs=296.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCcc-CcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHV-TAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~-~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
|+|.+|+.+++.+|+..||.++.++.+.+..++|+++|++|++||||+.+.... +.+. ... ..+.+.++|.++.
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~---~~~--~~~~~~l~g~d~~ 75 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEE---AEA--VLLAPLLIGRDPF 75 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccchhh---hhH--HHHHHHhcCCCHH
Confidence 578899999999999999999998888899999999999999999999975322 1111 111 1478899999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecC-C-CHHHHHHHHHHHH
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI-V-SPAEAAELASKYR 201 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~-~-~~~~~~~~~~~~~ 201 (412)
+++.+|+.++............+|++|||+||||+.||.+|+|||+||||.. +++++|.+... . +++...+.++.+.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~ 155 (372)
T COG4948 76 DIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALV 155 (372)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987753322222234699999999999999999999999999986 48888887765 2 4555666667777
Q ss_pred HcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 202 KQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
++||+.+|+|+|. +.+.|+++|+++|++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~ 233 (372)
T COG4948 156 ELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRE 233 (372)
T ss_pred hcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHH
Confidence 7999999999994 456999999999998 5699999999999999999999999999996 59999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ .+.+|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++
T Consensus 234 l~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~ 307 (372)
T COG4948 234 LRA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAAL 307 (372)
T ss_pred HHh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHH
Confidence 985 55699999999999999999999999999999999998 9999999999998888777766 5999999999
Q ss_pred HHHccCCCCceecccCCcccc-----cCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 359 HLSAGLGCFKFIDLDTPLLLS-----EDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 359 hlaaa~~~~~~~e~~~p~~~~-----~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|++++.+++. +++.++.+. ++++.++...++|++.+|++||||+++|++.+
T Consensus 308 hla~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 308 HLAAALPNFG--DLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred HHhhccchhh--hccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 9999886544 444444332 23577777889999999999999999998864
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=491.02 Aligned_cols=347 Identities=18% Similarity=0.240 Sum_probs=284.2
Q ss_pred eEEeEEEEEEEEeccccce---eccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPF---TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf---~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
.-|+++++.++...- .|+ ..+++. ..+.++|+|+|++|++||||+.+ +++.. ..++.++|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~d 72 (441)
T TIGR03247 4 PVVTEMRVIPVAGHD-SMLLNLSGAHAP--FFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKP 72 (441)
T ss_pred CEEeEEEEEeecccc-chhccccccCCC--cceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCC
Confidence 356777777764321 122 223333 57889999999999999999853 23322 23356899999999
Q ss_pred CCCHHHHHHHHHhhcC-------CCcc---hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CCeeeecee---ec-
Q 015161 123 AMALGSVFGVVAGLLP-------GHQF---ASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP- 186 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~-------g~~~---~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-g~-~~~i~~~~~---i~- 186 (412)
+.+++.+|+.|.+... ++.. .....|+|||||||||++||.+|+|||+||| |. +++||+|.+ ++
T Consensus 73 p~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~ 152 (441)
T TIGR03247 73 LGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGD 152 (441)
T ss_pred HHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeeccc
Confidence 9999999999976431 1110 0123589999999999999999999999999 64 578998753 11
Q ss_pred -------------------------CCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC
Q 015161 187 -------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA 239 (412)
Q Consensus 187 -------------------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa 239 (412)
..+++++.++++++.+ +||++||+|+|. +.++|+++|+++|++++++.|++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDA 232 (441)
T TIGR03247 153 RKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDP 232 (441)
T ss_pred cccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEEC
Confidence 1367888888888776 599999999995 5689999999999988899999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
|++|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++.+++++++.+++|+
T Consensus 233 N~~wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi 305 (441)
T TIGR03247 233 NGAWSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDI 305 (441)
T ss_pred CCCCCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCE
Confidence 9999999999999999998 7 49999999998 899999974 68999999999999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccc--cCCCCCceeeeCcE
Q 015161 316 INIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAV 393 (412)
Q Consensus 316 v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~ 393 (412)
+|+|+.++|++++++++++|+++|+++++|++.+++++.++++|++++++++. .+++.++.+. ++++.++++++||+
T Consensus 306 ~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~ 384 (441)
T TIGR03247 306 PLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGK 384 (441)
T ss_pred EeccCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCE
Confidence 99999766799999999999999999999998888999999999999988632 3444443322 35667778899999
Q ss_pred EeeCCCCCcccccCCCCC
Q 015161 394 YKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 394 ~~~p~~pGlG~~ld~~~~ 411 (412)
+.+|++||||+++|++.+
T Consensus 385 i~vp~~PGLGve~d~~~l 402 (441)
T TIGR03247 385 IQVPDKPGLGVEIDMDAV 402 (441)
T ss_pred EecCCCCCCCceeCHHHH
Confidence 999999999999999876
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=467.90 Aligned_cols=317 Identities=23% Similarity=0.316 Sum_probs=278.2
Q ss_pred EEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCCCCCHHHHH
Q 015161 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (412)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (412)
+++++|++.||.++.+++++++.++|||+|++|++||||+.+. +.+++++...+...+++ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4678999999999999999999999999999999999999853 55677776655555554 6889999 999999999
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
+.+.. +.++. .+++||||||||++||..|+|+|+||||.++++|+|.+++..+++++.+++++++++||+.||+
T Consensus 80 ~~~~~-~~~~~-----~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~Ki 153 (324)
T TIGR01928 80 ELVRS-LKGTP-----MAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKL 153 (324)
T ss_pred HHHHH-ccCCc-----HHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 98865 33332 3799999999999999999999999999888999999988889999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC
Q 015161 211 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 211 KvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
|++. +.|+++++++|+++|++.|++|+|++|+.+++ +++++|+++++ .|||||++++|++++++|++ ++++
T Consensus 154 Kv~~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~ 224 (324)
T TIGR01928 154 KITP--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTIT 224 (324)
T ss_pred EeCC--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCC
Confidence 9964 67999999999988899999999999999986 67899999997 49999999999999999975 6889
Q ss_pred eEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce
Q 015161 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369 (412)
Q Consensus 291 pIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~ 369 (412)
||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+.++++|+|+..++...
T Consensus 225 pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~ 304 (324)
T TIGR01928 225 PICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYP 304 (324)
T ss_pred CEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999887765433
Q ss_pred eccc-CCcccccCCCCCc
Q 015161 370 IDLD-TPLLLSEDPVLDG 386 (412)
Q Consensus 370 ~e~~-~p~~~~~d~~~~~ 386 (412)
.|.. +...+..|++.++
T Consensus 305 ~~~~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 305 GDVSPSGYYFDQDIVAPS 322 (324)
T ss_pred CCCCCccccccccccCCC
Confidence 3443 3233455555544
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=471.57 Aligned_cols=312 Identities=17% Similarity=0.231 Sum_probs=256.5
Q ss_pred eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCCHHHHHHHHHhhc--CCCcchhhhHH
Q 015161 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGHQFASQLKV 148 (412)
Q Consensus 72 ~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a 148 (412)
+.++.++|||+|++|++||||+... +.. . ..+ +.+.|.|+|+++.+++.+|+.|++.. .++.. ....|
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~~-----~~~--~-~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g-~~~~A 124 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTAG-----EMG--A-FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKG-LVMNT 124 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCCc-----HHH--H-HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCcc-HhhhH
Confidence 4567899999999999999996431 221 1 223 45899999999999999999997642 22221 12358
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC--C-----ChhHHH
Q 015161 149 RAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDI 220 (412)
Q Consensus 149 ~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--~-----~~~~D~ 220 (412)
+||||+||||++||.+|+|||+||||. ++++|+|.+.. .++ . .+++||+++|+|++ + ++++|+
T Consensus 125 ~saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di 195 (394)
T PRK15440 125 ISCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNA 195 (394)
T ss_pred HHHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHH
Confidence 999999999999999999999999996 67999986532 222 1 23689999999984 2 458999
Q ss_pred HHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC
Q 015161 221 EVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 299 (412)
Q Consensus 221 ~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~ 299 (412)
++|+++|++ |+++.||+|+|++|++++|++++++|+++++. |||||++++|+++|++|++. ..+++||+.||+++
T Consensus 196 ~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~--wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~ 271 (394)
T PRK15440 196 AMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLK--WIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEA 271 (394)
T ss_pred HHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCc--ceeCCCCcccHHHHHHHHHh--CCCCCceecCCCcc
Confidence 999999997 89999999999999999999999999999985 99999999999999999862 12348999999999
Q ss_pred CHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC--Cc
Q 015161 300 SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL 376 (412)
Q Consensus 300 ~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~--p~ 376 (412)
+.++++++++.+++|++|+|++++| +|+++|++++|+++|+++++|+. .++++|++++++|+.++|+.. |.
T Consensus 272 ~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~ 345 (394)
T PRK15440 272 TLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPD 345 (394)
T ss_pred CHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcc
Confidence 9999999999999999999999997 99999999999999999999962 357899999999998888621 11
Q ss_pred -----ccccCCCCCceeeeCcEEeeC--CCCCcccccCCCCC
Q 015161 377 -----LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 411 (412)
Q Consensus 377 -----~~~~d~~~~~~~~~~G~~~~p--~~pGlG~~ld~~~~ 411 (412)
...++.+.+.+.++||++.+| ++||||+++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~ 387 (394)
T PRK15440 346 ADTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCN 387 (394)
T ss_pred ccccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHH
Confidence 111122223367789999999 99999999999864
|
|
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=455.15 Aligned_cols=316 Identities=29% Similarity=0.400 Sum_probs=275.9
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+|+++++++|++.||.++.++.+.++.++|||+ ++|++||||+.|.+.+ +|+.+.+...+..+.|.++ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~-~~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRY-GESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCC-CCCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 6899999999987766 4777766666667888886 2 1122222
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
. ..+ ++. .+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++|
T Consensus 79 ~----~~~-~~~-----~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 148 (321)
T PRK15129 79 Q----KLL-PAG-----AARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLL 148 (321)
T ss_pred H----hhc-cCh-----HHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 212 222 37999999999999999999999999996 568999999988899999999999999999999
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|+|. +.|+++++++|++.+++.|++|+|++|+.++|+++++.++++++ .|||||++++|+++++++ .+
T Consensus 149 KlKv~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~ 218 (321)
T PRK15129 149 KVKLDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IH 218 (321)
T ss_pred EEeCCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------cc
Confidence 999975 46899999999987899999999999999999999999999987 499999999999888765 35
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++|||++++.++.++. +++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+ .|++
T Consensus 219 ~~pia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~ 293 (321)
T PRK15129 219 PLPICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQV 293 (321)
T ss_pred CCCEecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCC
Confidence 79999999999999999984 78999999999998 999999999999999999999999999999999999 4677
Q ss_pred ceecccCCcccccCCCCCceeeeCcEEe
Q 015161 368 KFIDLDTPLLLSEDPVLDGYEVSGAVYK 395 (412)
Q Consensus 368 ~~~e~~~p~~~~~d~~~~~~~~~~G~~~ 395 (412)
.+.|+++++.+.+|+ .+++.+++|+++
T Consensus 294 ~~~dl~~~~~~~~d~-~~~~~~~~G~~~ 320 (321)
T PRK15129 294 RFADLDGPTWLAVDV-EPALQFTTGELH 320 (321)
T ss_pred cEecCCCchhhcccC-CCCeEEeCCEEe
Confidence 788999888777787 456889999875
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=452.07 Aligned_cols=311 Identities=42% Similarity=0.658 Sum_probs=280.1
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
.|+++++++|++.|+.++.++...++.++|||+|+ |++||||+.+.+++++++...+...++.+.|.++|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 37889999999999999999999999999999999 999999999877666676665555566679999999999 9999
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh-CCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL-Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
++.+.....++. .+++||||||||++||..|+|+|+|| |+.+.++|+|++++..+++++.+.+++++++||+.|
T Consensus 79 ~~~l~~~~~~~~-----~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~i 153 (316)
T cd03319 79 LEALQELLPGNG-----AARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLL 153 (316)
T ss_pred HHHHHHhccCCh-----HHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 999977544322 37899999999999999999999995 555678999988888889999999999999999999
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|+|.+++.|+++|+++|++.+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++
T Consensus 154 Kik~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~ 227 (316)
T cd03319 154 KIKLGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KS 227 (316)
T ss_pred EEEeCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cC
Confidence 9999988899999999999974499999999999999999999999999987 49999999999999999975 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|+.++++|+++++ .
T Consensus 228 ~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~ 305 (316)
T cd03319 228 PLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--A 305 (316)
T ss_pred CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--C
Confidence 899999999999999999999999999999999997 9999999999999999999999999999999999999987 4
Q ss_pred ceecccCC
Q 015161 368 KFIDLDTP 375 (412)
Q Consensus 368 ~~~e~~~p 375 (412)
.+.|++.+
T Consensus 306 ~~~~~~~~ 313 (316)
T cd03319 306 DFVDLDGP 313 (316)
T ss_pred cEEeccCc
Confidence 55555543
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=422.82 Aligned_cols=256 Identities=35% Similarity=0.565 Sum_probs=243.3
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (412)
|+++++++|++.||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57889999999999999999999999999999999999999974
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
++|||+||||++||.+|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+
T Consensus 45 ------------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Ki 106 (265)
T cd03315 45 ------------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKL 106 (265)
T ss_pred ------------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 37999999999999999999999999888999999988888899999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC
Q 015161 211 KVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289 (412)
Q Consensus 211 KvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 289 (412)
|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ .++
T Consensus 107 Kvg~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 180 (265)
T cd03315 107 KVGRDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATD 180 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCC
Confidence 9998889999999999997 6799999999999999999999999999987 49999999999999999975 678
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCC
Q 015161 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 290 ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~ 366 (412)
+||++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+|++++.
T Consensus 181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 181 TPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999998 999999999999999999999999999999999999998874
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=409.65 Aligned_cols=289 Identities=24% Similarity=0.296 Sum_probs=249.3
Q ss_pred EEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHHHH
Q 015161 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (412)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l 133 (412)
+++++|++.||+++.++.+.++.++|||+ ++|++||||+.|.+.|++|+...+...++.+.|.++++++.++.
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~------ 73 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAID------ 73 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhcc------
Confidence 46789999999999999999999999999 56999999999999999999888877777788988887654332
Q ss_pred HhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC
Q 015161 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213 (412)
Q Consensus 134 ~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 213 (412)
. .+ + .+++|||+||||+.||. +.|. ...+...++++.+++++..++.+ ++||++||+|+|
T Consensus 74 -~---~~--~---~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG 133 (307)
T TIGR01927 74 -D---QL--P---SVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVG 133 (307)
T ss_pred -c---cC--c---HHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeC
Confidence 1 01 1 26899999999999997 2221 12223346677788887776665 789999999999
Q ss_pred C-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 214 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 214 ~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
. ++++|+++|+++|++ ++++.|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++
T Consensus 134 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~ 205 (307)
T TIGR01927 134 VGELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----AT 205 (307)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hC
Confidence 5 788999999999997 6779999999999999999999999997 776 5999999876 78998874 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++.+.+++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++|+++++++.
T Consensus 206 ~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~ 285 (307)
T TIGR01927 206 GTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPD 285 (307)
T ss_pred CCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999998 9999999999999999999999999999999999999999887
Q ss_pred ceecccCCcc
Q 015161 368 KFIDLDTPLL 377 (412)
Q Consensus 368 ~~~e~~~p~~ 377 (412)
....++++..
T Consensus 286 ~~~~~~~~~~ 295 (307)
T TIGR01927 286 PAAVGFTTAL 295 (307)
T ss_pred CCCCCccHHH
Confidence 7777776544
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=404.19 Aligned_cols=250 Identities=32% Similarity=0.466 Sum_probs=230.8
Q ss_pred EEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHH
Q 015161 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (412)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (412)
+++++++|+++||.++.+++..++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999997632
Q ss_pred HHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 132 ~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
+++||||||||+.||..| ||. ++++|+|.+++..++ +..++++++.++||++||+
T Consensus 48 ----------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~Ki 103 (263)
T cd03320 48 ----------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKL 103 (263)
T ss_pred ----------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEE
Confidence 379999999999999999 665 578999999888777 5557788888999999999
Q ss_pred ecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 211 KVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 211 KvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|+ +
T Consensus 104 Kvg~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~------~ 175 (263)
T cd03320 104 KVGATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIE--YIEQPLPPDDLAELRRLA------A 175 (263)
T ss_pred EECCCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCc--eEECCCChHHHHHHHHhh------c
Confidence 9985 678999999999998 67999999999999999999999999999874 999999999999998873 5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+++.++++|+++++|+.
T Consensus 176 ~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 176 GVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred CCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999999998 9999999999999999999999999999999999999999874
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=414.03 Aligned_cols=287 Identities=17% Similarity=0.230 Sum_probs=245.1
Q ss_pred eeeEEEEEEEECCCcEEEEEeccCCccCccc-------HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcchh
Q 015161 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFAS 144 (412)
Q Consensus 73 ~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~ 144 (412)
..+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+|+.+++.+++.|......+..
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~-- 124 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNL-- 124 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcc--
Confidence 467899999999999999999873 566653 455555565 489999999999999999999875311111
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcHHHHhC------CCCCeeeeceeecC---CCHHHHHHHHHHHHHcC-CCEEeEecCC
Q 015161 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGK 214 (412)
Q Consensus 145 ~~~a~saId~Al~Dl~gk~~g~Pl~~LLG------g~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G-f~~~KiKvG~ 214 (412)
+.++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .+++++...+++++++| |+.+| |+|.
T Consensus 125 ~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~ 203 (408)
T TIGR01502 125 HTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGL 203 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecC
Confidence 22478999999999999999999999998 55679999999875 56899999999999998 99999 8997
Q ss_pred Chh-------HHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHc----CCCCCceeecCCCCCC----
Q 015161 215 NLK-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD---- 273 (412)
Q Consensus 215 ~~~-------~D~~~v~avr~~~~~~~l~vDaN~------~~~~~~A~~~~~~l~~----~~l~~~~iEeP~~~~d---- 273 (412)
+.. ++.++++++|+.+++..|++|+|+ +|++++|++++++|++ +++ |||||++.+|
T Consensus 204 ~~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~ 280 (408)
T TIGR01502 204 DGEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQ 280 (408)
T ss_pred CHHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhh
Confidence 644 444667777744668899999998 9999999999999986 553 9999999865
Q ss_pred HHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-ch
Q 015161 274 WEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ET 350 (412)
Q Consensus 274 ~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es 350 (412)
++++++|++.++ +.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|. ||
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es 360 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNET 360 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCC
Confidence 999999986321 236899999999999999999999999999999999998 999999999999999999999986 99
Q ss_pred HHHHHHHHHHHccCCC
Q 015161 351 RLAMGFAGHLSAGLGC 366 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~ 366 (412)
+++.++++|++++++.
T Consensus 361 ~I~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 361 NRSAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998774
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=401.29 Aligned_cols=296 Identities=22% Similarity=0.236 Sum_probs=250.8
Q ss_pred eEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHH
Q 015161 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (412)
Q Consensus 49 ~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (412)
++|+++++++|++.||+++.++++.++.++|+|+ ++|++||||+.|.++|++|+..++...+....+.+++.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 4799999999999999999999999999999997 8999999999999999999998887766653333444433321
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 129 ~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
....+ .+++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++|
T Consensus 79 ----------~~~~~---~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~ 132 (322)
T PRK05105 79 ----------LSQYP---SVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVA 132 (322)
T ss_pred ----------cccCc---HHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEE
Confidence 01222 3789999999999999999998621 234556788888888876 899999
Q ss_pred eEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 209 KLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 209 KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
|+|+| .++++|+++++++|++.+++.|++|+|++|++++|+++++++++ +++ .|||||++. .+++++|++
T Consensus 133 KvKvG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~-- 206 (322)
T PRK05105 133 KVKVGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR-- 206 (322)
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH--
Confidence 99999 57899999999999977899999999999999999999999998 877 599999964 556888764
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
++++||++|||+++.. +...+ .+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+.++++|++++
T Consensus 207 --~~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~ 282 (322)
T PRK05105 207 --ATGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAW 282 (322)
T ss_pred --hCCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHh
Confidence 6789999999999985 44444 567999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCceecccCCcccccCCC
Q 015161 364 LGCFKFIDLDTPLLLSEDPV 383 (412)
Q Consensus 364 ~~~~~~~e~~~p~~~~~d~~ 383 (412)
+++..+++++++..+.+|+.
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 283 LTPDTIPGLDTLDLMQAQLV 302 (322)
T ss_pred cCCCCCCCCChHHHHhhccc
Confidence 96566777888777777754
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-51 Score=399.84 Aligned_cols=282 Identities=20% Similarity=0.300 Sum_probs=237.0
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+++++++++|++.||+++.++.+.++.++|+|+|++|++||||+.|.|.|++|+..++...++.+.|.+.++ ++
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 577999999999999999999999999999999999999999999999999999887766555555544322 11
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHH-HHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALID-AVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~D-l~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
..+... +. .+++|||+| || +.++..+. ....+ ..++.+.+++++.+++++++++||++|
T Consensus 78 -~~~~~~-----~~---~~~~aie~A-~d~~~~~~~~~--------~~~~~--~~~~~i~~~~~~~~~a~~~~~~G~~~~ 137 (320)
T PRK02714 78 -FSIPDA-----LP---ACQFGFESA-LENESGSRSNV--------TLNPL--SYSALLPAGEAALQQWQTLWQQGYRTF 137 (320)
T ss_pred -Hhhhhc-----CC---HHHHHHHHH-HHHHhcccccC--------CcCCC--ceeeecCCCHHHHHHHHHHHHcCCCEE
Confidence 111111 11 378999999 65 55444221 11223 334445566788889999999999999
Q ss_pred eEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHH
Q 015161 209 KLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHI 283 (412)
Q Consensus 209 KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~ 283 (412)
|+|+|. ++++|+++|+++|++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++
T Consensus 138 KvKvG~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~- 214 (320)
T PRK02714 138 KWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ- 214 (320)
T ss_pred EEEECCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH-
Confidence 999995 578899999999997 7899999999999999999999999998 676 59999999999999999975
Q ss_pred hhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 284 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++++||++|||++++.++.++++.+++|++|+|++|+| ++++ .++|+++|+++++|||+||+|+.++++|+++
T Consensus 215 ---~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa 288 (320)
T PRK02714 215 ---DYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAA 288 (320)
T ss_pred ---hCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 8755 4789999999999999999999999999999
Q ss_pred cCCC
Q 015161 363 GLGC 366 (412)
Q Consensus 363 a~~~ 366 (412)
++++
T Consensus 289 ~~~~ 292 (320)
T PRK02714 289 ELSR 292 (320)
T ss_pred hCCC
Confidence 9886
|
|
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=403.82 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=232.8
Q ss_pred eEEEEEEEECCCcEEEEEeccCC--ccCcccH----HHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcC-CCcchhhh
Q 015161 75 ENVAIRIELSNGCVGWGEAPVLP--HVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLP-GHQFASQL 146 (412)
Q Consensus 75 ~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~-g~~~~~~~ 146 (412)
+.++|||+|++|++||||+.+.. ..++++. ..+...++ .++|.|+|+|+.+++.+|+.|++.+. ++.. ..
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~--~~ 90 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRL--HT 90 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcc--hh
Confidence 68999999999999999987531 1223322 22333444 48999999999999999999977432 3332 12
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhC-----CC-CCeeeeceeecCC---CHHHHHHHHHHHHH---------cCCCEE
Q 015161 147 KVRAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTL 208 (412)
Q Consensus 147 ~a~saId~Al~Dl~gk~~g~Pl~~LLG-----g~-~~~i~~~~~i~~~---~~~~~~~~~~~~~~---------~Gf~~~ 208 (412)
.++||||+||||++||.+|+|||+||| |. ++++|+|.+++.. ..+++.++++++++ +||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 478999999999999999999999999 42 5689999876543 34555565555543 366666
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHcC-C-CCCceeecCCCCCC----HHH
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEG 276 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~----~--~~~~A~~~~~~l~~~-~-l~~~~iEeP~~~~d----~~~ 276 (412)
|+|+ ++++|.++++++|..++++.|++|+|++ | ++++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 6664 4577899999999448999999999986 6 999999999999976 2 2 369999999865 899
Q ss_pred HHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHH
Q 015161 277 LGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLA 353 (412)
Q Consensus 277 ~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~ 353 (412)
|++|++..+ +.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+++
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999985310 125899999999999999999999999999999999998 999999999999999999999874 99999
Q ss_pred HHHHHHHHccCCCC
Q 015161 354 MGFAGHLSAGLGCF 367 (412)
Q Consensus 354 ~~a~~hlaaa~~~~ 367 (412)
.++++|+++++++.
T Consensus 328 ~aa~lHlaaa~~~~ 341 (369)
T cd03314 328 ARVTVHVALATRAD 341 (369)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999998863
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=373.62 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.1
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (412)
|+++++++|++.||.++.++...++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678999999999999999999999999999999999999997
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEe
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 209 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~K 209 (412)
++||||||||++||.+|+|||+||||. ++++|+|.+
T Consensus 44 ------------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~------------------------- 80 (229)
T cd00308 44 ------------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS------------------------- 80 (229)
T ss_pred ------------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-------------------------
Confidence 489999999999999999999999996 568888865
Q ss_pred EecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 210 LKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 210 iKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ..
T Consensus 81 ----------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~ 144 (229)
T cd00308 81 ----------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RT 144 (229)
T ss_pred ----------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hC
Confidence 8899999997 6799999999999999999999999999987 49999999999999999975 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+
T Consensus 145 ~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 224 (229)
T cd00308 145 GIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPND 224 (229)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCc
Confidence 899999999999999999999999999999999998 9999999999999999999999999999999999999999998
Q ss_pred ceec
Q 015161 368 KFID 371 (412)
Q Consensus 368 ~~~e 371 (412)
.++|
T Consensus 225 ~~~e 228 (229)
T cd00308 225 RAIE 228 (229)
T ss_pred hhhc
Confidence 7766
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=447.28 Aligned_cols=311 Identities=24% Similarity=0.305 Sum_probs=255.1
Q ss_pred cccccceeeEEeEEEEEEEEeccccceeccCcee--eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHH---H--
Q 015161 38 KNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV---K-- 110 (412)
Q Consensus 38 ~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~--~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~---~-- 110 (412)
......+.|||++|+++++++||+.||+++.|++ ..++.++|+|+|++|.+||||+.|.+. +.|+...+.. .
T Consensus 923 ~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~ 1001 (1655)
T PLN02980 923 SIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLL 1001 (1655)
T ss_pred ccccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHH
Confidence 3445678999999999999999999999998753 458999999999999999999998753 4454332211 1
Q ss_pred --H-----HHHhHHHcCCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC------
Q 015161 111 --A-----SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN------ 177 (412)
Q Consensus 111 --~-----~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~------ 177 (412)
+ +.+.|.++|++. +.++..+.. ..+..++ .+++||||||||++||..|+|+|+||||.++
T Consensus 1002 ~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~p---sa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~ 1074 (1655)
T PLN02980 1002 HVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFP---SVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSE 1074 (1655)
T ss_pred HHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccch---HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceec
Confidence 1 124677888743 333444421 1112223 4899999999999999999999999998432
Q ss_pred ---eeeeceee-cCCCHHHHHHHHHHHHHcCCCEEeEecCC--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 015161 178 ---TITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 178 ---~i~~~~~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~ 250 (412)
.+|++..+ +..+++++.+++++++++||+++|+|+|. ++++|+++|+++|++ ++++.||+|+|++|+.++|++
T Consensus 1075 ~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1075 QSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred cccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 34444444 35588999999999999999999999994 688999999999997 789999999999999999999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEecCCCCc-
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~-----~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++++|+++++. |||||++ +.+++++|++ ++++||++||++++..+ ++++++.+ ++++++|++++|
T Consensus 1155 ~~~~L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~iK~~~~GG 1225 (1655)
T PLN02980 1155 FGSLVKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVIKPSVVGG 1225 (1655)
T ss_pred HHHHHhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEeChhhhCC
Confidence 99999999874 9999997 4678888874 68999999999998653 67777776 457899999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++++++++|+++|+++++||++||+|++++++|++++++
T Consensus 1226 it~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1226 FENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred HHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999874
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=335.17 Aligned_cols=280 Identities=26% Similarity=0.398 Sum_probs=230.6
Q ss_pred EEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHH
Q 015161 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (412)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (412)
++..+++||+..| ..++.|+.++++ |-.||||.+|.+.|+.|.. .. |
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~----------~~-------------~- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEA----------AA-------------W- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHH----------HH-------------H-
Confidence 3456778887443 456678999998 9999999999887765411 00 0
Q ss_pred HHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEe
Q 015161 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 211 (412)
Q Consensus 132 ~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 211 (412)
..+++|.|- .|-|- ..+++||+|.+++..+++++.+.++++ .||+++|+|
T Consensus 60 ----------------~~~~~~~~~-------~~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvK 109 (327)
T PRK02901 60 ----------------LASAIEAAY-------GGPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVK 109 (327)
T ss_pred ----------------HHHHHHhhh-------ccCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEE
Confidence 124444432 11121 335689999998888887776666554 699999999
Q ss_pred cCC---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 212 VGK---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 212 vG~---~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
+|. ++++|+++|+++|++ ||++.|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++
T Consensus 110 Vg~~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~---- 181 (327)
T PRK02901 110 VAEPGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR---- 181 (327)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----
Confidence 973 689999999999997 79999999999999999999999999 78887 499999974 889999875
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++||++|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|++++++++|++++++
T Consensus 182 ~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 182 RVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALP 258 (327)
T ss_pred hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999998 999887 57999999999999999999999999999999
Q ss_pred CCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 366 CFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 366 ~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++.+ +++++...+..|+ .+++.++||++++|+ +++|++.+
T Consensus 259 ~~~~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 259 ELDHACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred CCCcccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 8776 6776544455677 677889999999998 78998765
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=340.95 Aligned_cols=303 Identities=21% Similarity=0.280 Sum_probs=237.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHH
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (412)
|+|++|..+.+- .|.| ++++.|+|+|++|.+|+|+++... .|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 589999998873 3334 478999999999999999986321 245666777777
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC---eeeecee
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 184 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~---~i~~~~~ 184 (412)
.++ .+.|.|+|+|+.+++.+++.|.+......+. ...+|++|||||+||+.||.+|+|||+||||..+ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 775 5899999999999999999987642111110 0126899999999999999999999999999643 4555544
Q ss_pred ecC----CCH---HH---------HHHHHHHHHHcCCCEEeE---------ecC------CChhHHHHHHHHHHHh----
Q 015161 185 IPI----VSP---AE---------AAELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 229 (412)
Q Consensus 185 i~~----~~~---~~---------~~~~~~~~~~~Gf~~~Ki---------KvG------~~~~~D~~~v~avr~~---- 229 (412)
++. ..+ .+ ..+++.+...++|+.+|. ++| ++++.|.++|+.+|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111 11 124444555667888886 355 4568899999999986
Q ss_pred ----CCCcEEEEeCC-------C-------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc--
Q 015161 230 ----HPDSSFILDAN-------E-------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 288 (412)
Q Consensus 230 ----~~~~~l~vDaN-------~-------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-- 288 (412)
|+++.|++|+| + .|+++++++++.+ +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 57899999993 4 3577788776555 566887 59999999999999999986 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCcchHHHHHHHHHHHccCC
Q 015161 289 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 289 ~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~-~~~~es~i~~~a~~hlaaa~~ 365 (412)
.+||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|++++.+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 567999999999999999999999998 99999999999999998766 888899999988888887665
Q ss_pred C
Q 015161 366 C 366 (412)
Q Consensus 366 ~ 366 (412)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=332.48 Aligned_cols=289 Identities=19% Similarity=0.281 Sum_probs=227.7
Q ss_pred eeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL 136 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 136 (412)
++++.|+|+|++|.+|+|++++.. .|+++++..++..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 478999999999999999986521 266778888888776 489999999999999999998754
Q ss_pred cCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC-eeeec--eeecC--C-----C-------H--HHHHHH
Q 015161 137 LPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTD--ITIPI--V-----S-------P--AEAAEL 196 (412)
Q Consensus 137 ~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~-~i~~~--~~i~~--~-----~-------~--~~~~~~ 196 (412)
....... ...+|++|||||+||+.||.+|+|||++|||..+ ++|++ ..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2111110 0136899999999999999999999999999644 45444 32221 0 1 1 223456
Q ss_pred HHHHHHcCCCEEe-----------EecC------CChhHHHHHHHHHHHh--------CCCcEEEEeC------------
Q 015161 197 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 239 (412)
Q Consensus 197 ~~~~~~~Gf~~~K-----------iKvG------~~~~~D~~~v~avr~~--------~~~~~l~vDa------------ 239 (412)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6777788999988 3344 4667899988888773 3489999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CCCHHHHHHHHHcCC
Q 015161 240 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGNL 312 (412)
Q Consensus 240 -----N~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~a 312 (412)
|+.|++++++++++.| ++|++ .|||||++++|++++++|++.+ ...+||++||+ ++++++++++++.++
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~~~--g~~ipi~gdE~~~~~~~~~~~~i~~~a 328 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTAKL--GDKIQIVGDDLFVTNPERLKKGIEKKA 328 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHHhc--CCCCeEEcCCcccCCHHHHHHHHHhCC
Confidence 4558889999988886 56887 5999999999999999998621 13799999995 578999999999999
Q ss_pred CCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCcchHHHHHHHHHHHccCCC
Q 015161 313 ADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 313 ~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~-~~~~es~i~~~a~~hlaaa~~~ 366 (412)
+|++++|++++| ++++++++++|+++|+++++ |++.||..+..+.+|++.+.+.
T Consensus 329 ~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ 384 (408)
T cd03313 329 ANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred CCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCc
Confidence 999999999998 99999999999999999977 7777988876666666655443
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=328.73 Aligned_cols=289 Identities=21% Similarity=0.278 Sum_probs=221.4
Q ss_pred eeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL 136 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 136 (412)
.+++.|+|+|++|.+|+++++...+ |.+.++..++..++ .+.|.|+|+|+.+++.+++.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999865311 33345566777665 489999999999999999999763
Q ss_pred cCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeeceee--c--C--C---CHHHH---------HHH
Q 015161 137 LPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITI--P--I--V---SPAEA---------AEL 196 (412)
Q Consensus 137 ~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i--~--~--~---~~~~~---------~~~ 196 (412)
....... ...+|++|||||+||+.||.+|+|||+||||.. .++|++... . . . +.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1111111 123689999999999999999999999999964 477766442 1 1 1 23332 233
Q ss_pred HHHHHHcCCCEEe--Ee-------cC------CChh---HHHHHH-HHHHH---h-CCCcEEEEeCCC--C---------
Q 015161 197 ASKYRKQGFTTLK--LK-------VG------KNLK---EDIEVL-RAIRA---V-HPDSSFILDANE--G--------- 242 (412)
Q Consensus 197 ~~~~~~~Gf~~~K--iK-------vG------~~~~---~D~~~v-~avr~---~-~~~~~l~vDaN~--~--------- 242 (412)
+.+...+||+.+| +| +| ++++ ++++.+ +++++ . |+++.|++|+|. .
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3444447899999 44 45 2222 333333 44444 3 578999999983 2
Q ss_pred -------CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc--CCeEEeCCCC-CCHHHHHHHHHcC
Q 015161 243 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 311 (412)
Q Consensus 243 -------~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs~-~~~~~~~~~i~~~ 311 (412)
|+.++++++++. +++|++ .|||||++++|++++++|++ ++ .+||++||+. +++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 688987 59999999999999999986 45 7999999985 5699999999999
Q ss_pred CCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE-EccCcchHHHHHHHHHHHccCCCCc
Q 015161 312 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCFK 368 (412)
Q Consensus 312 a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~-~~~~~es~i~~~a~~hlaaa~~~~~ 368 (412)
++|++++|++++| ++++++++++|+++|+.++ .|++.||.++..+.+|++++.+...
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik 387 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIK 387 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccc
Confidence 9999999999998 9999999999999999955 5777899999999999988776443
|
Alternate name: enolase |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=285.50 Aligned_cols=303 Identities=18% Similarity=0.234 Sum_probs=229.7
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCc----------EEEEEeccCCc----cCcccHHHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLPH----VTAEDQQTAMVK 110 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~----~~~e~~~~~~~~ 110 (412)
+|+|++|..+.+- .|.| +++|.|+|+|++|. +|++|+..... |.+..+..++..
T Consensus 25 ~~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~ 92 (457)
T PLN00191 25 MATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKN 92 (457)
T ss_pred CCeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHH
Confidence 3699999998873 3444 47899999999998 78888753311 445667777777
Q ss_pred HH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCC-CCeeeecee
Q 015161 111 AS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT 184 (412)
Q Consensus 111 ~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL---Gg~-~~~i~~~~~ 184 (412)
++ .+.|.|+|+++.+.+.+++.|.+........ ...+|+.||+||+|++.|+.+|+|||++| ||. ...+|++..
T Consensus 93 v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~ 172 (457)
T PLN00191 93 VNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAF 172 (457)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeE
Confidence 75 4899999999999999998887643111110 02368999999999999999999999999 774 345666541
Q ss_pred --e--c----------------C--CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CChhHHHHHHHHHH
Q 015161 185 --I--P----------------I--VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIR 227 (412)
Q Consensus 185 --i--~----------------~--~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~~~D~~~v~avr 227 (412)
+ + . .+..+..+. ..+..+. |... ..+| ++++.+.+.|+.++
T Consensus 173 niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~ 250 (457)
T PLN00191 173 NVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLK 250 (457)
T ss_pred EeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHH
Confidence 1 1 1 122222221 1111111 3321 1233 35666667666666
Q ss_pred Hh----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHc-CCCCCceeecCCCCCCHHHH
Q 015161 228 AV----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 228 ~~----~--~~~~l~vDaN~~--------~---------------~~~~A~~~~~~l~~-~~l~~~~iEeP~~~~d~~~~ 277 (412)
++ + +++.|.+|++.+ | |.++++++++.|.+ |++ .|||||++.+|++++
T Consensus 251 eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~ 328 (457)
T PLN00191 251 EAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHW 328 (457)
T ss_pred HHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHH
Confidence 64 3 479999998543 3 78899999999654 886 599999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 354 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~~ 354 (412)
++|++ +..+||++||+. +++++++++++.+++|++++|++++| ++++++++++|+++|+.+++|+ |.||+++.
T Consensus 329 ~~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~ 404 (457)
T PLN00191 329 AKLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSF 404 (457)
T ss_pred HHHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHH
Confidence 99985 578999999985 88999999999999999999999998 9999999999999999999966 89999999
Q ss_pred HHHHHHHccCCCC
Q 015161 355 GFAGHLSAGLGCF 367 (412)
Q Consensus 355 ~a~~hlaaa~~~~ 367 (412)
.+.+|++++.+..
T Consensus 405 ~Adlava~~~~~i 417 (457)
T PLN00191 405 IADLAVGLATGQI 417 (457)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999987644
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=265.93 Aligned_cols=300 Identities=20% Similarity=0.283 Sum_probs=218.3
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCc----------EEEEEeccCC-----ccCcccHHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (412)
+|+|++|..+.+- .|.| +++|.|+|+|++|. +|++|+.... .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4799999998873 3444 47899999999998 8999985422 245566777777
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCC-c-----ch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCCC--
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGH-Q-----FA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 176 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~-~-----~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL---Gg~~-- 176 (412)
.++ .+.|.|+|+++.+.+.+++.|.+.+.|. . .. ...+|+.||+||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 775 4899999999999999999887731111 0 10 02368999999999999999999999999 6641
Q ss_pred -C--eeeeceeecC--------------------CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CChhH
Q 015161 177 -N--TITTDITIPI--------------------VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNLKE 218 (412)
Q Consensus 177 -~--~i~~~~~i~~--------------------~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~~~ 218 (412)
. ++|++..+.. .+..+..+. .++..+. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 1 3344432211 122222221 1222221 3321 1233 34445
Q ss_pred HHHHHHHHHH----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHcCCCCCceeec
Q 015161 219 DIEVLRAIRA----VH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 267 (412)
Q Consensus 219 D~~~v~avr~----~~--~~~~l~vDaN~------------------------~~~~~~A~~~~-~~l~~~~l~~~~iEe 267 (412)
+.+.++.+++ ++ +++.|.+|+.. .++.+|.++++ +.+++|++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 5555555544 43 46888888643 35667777755 56899987 59999
Q ss_pred CCCCCCHHHHHHhHHHhhccc--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 268 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
|++++|++++++|++ ++ .+||++||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 677999999999999999999999998 9999999999999999999
Q ss_pred EccCc-chHHHHHHHHHHHccCCC
Q 015161 344 IGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 344 ~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
+|++. ||. ..+.+|||.|+++
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 97764 665 5677799988764
|
|
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=189.59 Aligned_cols=273 Identities=21% Similarity=0.243 Sum_probs=204.7
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCCCHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMALGS 128 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~ 128 (412)
+.++|.+.+|+..-+-.-...+.+|+.++|++. +++..||||..|.|+|+.|+.+.+-.... .+-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 567899999999887777788889999999998 57899999999999999998776544332 2333444432221
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHHHHcCCC
Q 015161 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFT 206 (412)
Q Consensus 129 ~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~Gf~ 206 (412)
+.+++ +..++.||+-.+.+-.-. .|. |...|+ .+|+++......+ .|-+
T Consensus 79 -----------~~~PS---VAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeK 129 (321)
T COG1441 79 -----------PQMPS---VAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEK 129 (321)
T ss_pred -----------ccCch---hHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccce
Confidence 22343 568999999877653211 111 333343 4789886655544 6889
Q ss_pred EEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc-CCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 207 TLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 207 ~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
.-|+||| .....|=-.+.-+-++.||..|++|||.+|++..|..|++.... +.-.+.|+||||...+. -+++.
T Consensus 130 vAKvKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~ae--Sr~Fa--- 204 (321)
T COG1441 130 VAKVKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRAE--SRAFA--- 204 (321)
T ss_pred eeeeeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChHH--HHHHH---
Confidence 9999999 22335555667777889999999999999999999999988742 32233599999986432 33343
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
+.++|.||.|||+... ||..-- ...+..+.+|++-+| +..+.+.++.|+++|+..++++.+||++|+..-+.+|+-
T Consensus 205 -~eTgIAIAWDEs~rea-dF~~e~-e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~ 281 (321)
T COG1441 205 -RETGIAIAWDESLREA-DFAFEA-EPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAW 281 (321)
T ss_pred -HhcCeeEeecchhccc-cccccc-CCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHH
Confidence 3789999999999875 443322 345888999999999 999999999999999999999999999999998888874
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=172.41 Aligned_cols=115 Identities=30% Similarity=0.498 Sum_probs=98.9
Q ss_pred eEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCCCHH
Q 015161 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (412)
Q Consensus 49 ~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (412)
++++++++.+|++ ||++|.++...++.++|||+|++|++||||+.+.+. +.+... ..+++ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~~---~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETVA---SALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHHH---HHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHHH---HHHHHHHHHHHhcCCHHHHH
Confidence 5788899999999 999999999999999999999999999999998654 333333 33343 88999999999999
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 015161 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173 (412)
Q Consensus 128 ~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG 173 (412)
.+++.+++...++ ..|++||||||||++||.+|+|||+|||
T Consensus 77 ~~~~~~~~~~~~~-----~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN-----PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH-----HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999988765542 3589999999999999999999999998
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=166.64 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=96.4
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 373 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~ 373 (412)
||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.++++|++++++++.++|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999999888
Q ss_pred CCcccccCCCCC---ceeeeCcEEeeCC-CCCcccc
Q 015161 374 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 405 (412)
Q Consensus 374 ~p~~~~~d~~~~---~~~~~~G~~~~p~-~pGlG~~ 405 (412)
|+.. +|++.+ ++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 5433 566653 456 999999999 9999986
|
... |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=176.35 Aligned_cols=301 Identities=22% Similarity=0.294 Sum_probs=207.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc---------------cCcccHHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH---------------VTAEDQQTAMVKA 111 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~---------------~~~e~~~~~~~~~ 111 (412)
.|++|..+.+- .|+| .+++-|+|+|++|..|++-++...+ |.+-.+..++..+
T Consensus 3 ~I~~i~aReIl--------DSRG----npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREIL--------DSRG----NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEEE--------cCCC----CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 67777777763 4444 3789999999999999886554221 2222456677777
Q ss_pred HH-HhHHHcCCCCCCHHHHHHHHHhhcCCCcchh-hhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-C--eeeeceeec
Q 015161 112 SE-ACEVLKESPAMALGSVFGVVAGLLPGHQFAS-QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-N--TITTDITIP 186 (412)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~-~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~--~i~~~~~i~ 186 (412)
++ ++|.|+|.++.+...+.+.|...-....+.. ..+++-||.||+--+.|..+|+|||++|||.. . ++|....+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 64 7999999999999888887766421111100 12688999999999999999999999999974 3 344332221
Q ss_pred C--------------------CCHHHHHHHH--------HHHHHcCCCEEeEecC---CChhHH---HHH-HHHHHHhC-
Q 015161 187 I--------------------VSPAEAAELA--------SKYRKQGFTTLKLKVG---KNLKED---IEV-LRAIRAVH- 230 (412)
Q Consensus 187 ~--------------------~~~~~~~~~~--------~~~~~~Gf~~~KiKvG---~~~~~D---~~~-v~avr~~~- 230 (412)
. .+..+..+.. .-+.++|..+-+=.-| ++++.+ ++. ++++.+++
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy 230 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGY 230 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCC
Confidence 0 0111211111 1122234333311111 344433 333 46666764
Q ss_pred -C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 231 -P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 231 -~--~~~l~vDaN~--------------~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
+ ++.+.+|+.. .++.+|-+.++..| ++|++ ..||+|+.++||+++++|++.+. ..+.|
T Consensus 231 ~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~g--~kvqi 306 (423)
T COG0148 231 EPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRLG--DKVQI 306 (423)
T ss_pred CCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhhC--CeEEE
Confidence 2 4888899642 34566777776664 78885 59999999999999999997432 23778
Q ss_pred EeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCC
Q 015161 293 AADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 293 a~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~ 365 (412)
++|. -+++++.+++-++.++++.+.+|++++| +|++++.+.+|+.+|+.+++++.. ||.- ...+|||.|+.
T Consensus 307 vGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD--~tIAdLAVa~~ 380 (423)
T COG0148 307 VGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETED--TTIADLAVATN 380 (423)
T ss_pred ECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCccc--chHHHHHHHhC
Confidence 8876 4778999999999999999999999999 999999999999999999998853 5543 34567777664
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=177.60 Aligned_cols=284 Identities=14% Similarity=0.175 Sum_probs=201.3
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC---ccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
+|++|..+.+- +|+| .+++-|+|+|++| .|.+.++... .|. -.+..++..+++ ++|.|+|++
T Consensus 3 ~I~~i~aReIl--------DSRG----nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVAV--------LRGG----KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEEE--------cCCC----CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 78999888863 4555 4789999999999 8887776521 233 346667777764 899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeee--ceeecCC------CHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITT--DITIPIV------SPAE 192 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~--~~~i~~~------~~~~ 192 (412)
+.+...+.+.|-..-...... ...+|+-|+.||+.-+.|+..|+|||++|||. ...+|+ .-.+... -|.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 999988888876532111110 01268899999999999999999999999884 334443 3223222 2322
Q ss_pred HHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec
Q 015161 193 AAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVHP----DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe 267 (412)
..+- .+-|+.+|--+-.+.++-++.+ +++.++|. ++.+.+|+...++.+|-+ +.+++|++ .+||
T Consensus 149 a~~~-----~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEI-----TDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhh-----HHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 2221 2234444421112445556654 77777752 588999997558888866 77889987 6999
Q ss_pred CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
|+..+ ++++++++. ...+.|.+|.-..|-... +.++++.+.+|++++| +|++++.+.+|+++|+.+++|+
T Consensus 218 p~~E~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99865 999999963 245888888765444322 7899999999999999 9999999999999999999987
Q ss_pred Cc-chHHHHHHHHHHHccCCC
Q 015161 347 MV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 347 ~~-es~i~~~a~~hlaaa~~~ 366 (412)
.. ||.- .+.+|||.|++.
T Consensus 289 RSGETeD--~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESAD--EALPHLAVGLRC 307 (341)
T ss_pred CCCCCcc--hhHHHHHHHhCC
Confidence 64 5543 456777777653
|
|
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-16 Score=159.26 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=200.3
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcE-----EEEEeccCC------cc-CcccHHHHHHHH
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (412)
..+.|++|..+.+- .|.| .+++-|+|+|++|.. -.||+.... ++ .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrG----nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAG----ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCC----CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34579999988873 4444 378889999999843 112443221 12 2234444444
Q ss_pred HHHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC--------CCeeeec
Q 015161 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 182 (412)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~--------~~~i~~~ 182 (412)
+.+.|.|+|+++.+...+.+.|.+........ ...+++-|+.||+.-+.|+..++|||++|++. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 46899999999999888887776543211111 02368999999999999999999999999873 1234432
Q ss_pred e--------------------eecC----CCHHHHHHHHHHH---HHcCCCEEeEecC-------C---ChhHHHHHH-H
Q 015161 183 I--------------------TIPI----VSPAEAAELASKY---RKQGFTTLKLKVG-------K---NLKEDIEVL-R 224 (412)
Q Consensus 183 ~--------------------~i~~----~~~~~~~~~~~~~---~~~Gf~~~KiKvG-------~---~~~~D~~~v-~ 224 (412)
. .+|. .+..+..+...+. ..+|+. .-+| + +.++-++.+ +
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 1 1122 2233322222111 111221 1222 1 233445543 6
Q ss_pred HHHHhC--C--CcEEEEeCC--CC--------------------------------CCHHHHHHHHHH-HHcCC--CCCc
Q 015161 225 AIRAVH--P--DSSFILDAN--EG--------------------------------YKPQEAVEVLEK-LYEMG--VTPV 263 (412)
Q Consensus 225 avr~~~--~--~~~l~vDaN--~~--------------------------------~~~~~A~~~~~~-l~~~~--l~~~ 263 (412)
+++++| | ++.|.+|+. +. .|.+|-+++.+. +++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 667764 2 477777742 11 346777887766 57887 5 5
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CC-CHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~-~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
+||+|+..+||+++++|++.+. ..+.|.+|.- ++ ++..+++.++.++++.+.+|++++| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~lG--~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAALG--DSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHhC--CeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 8999999999999999997542 2478888864 55 5899999999999999999999999 9999999999999999
Q ss_pred cEE---EccCcchHHHHHHHHHHHccCC
Q 015161 341 NLM---IGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 341 ~~~---~~~~~es~i~~~a~~hlaaa~~ 365 (412)
.++ +++..+ .-.+.+|||.|++
T Consensus 426 ~~v~v~vShRSG---eD~~IAdLAVa~g 450 (518)
T PTZ00378 426 RAVTVLVQTLAG---NAATAAHLAVAMG 450 (518)
T ss_pred cEEccccCCCcC---CccHHHHHHHHcC
Confidence 998 766532 4567888888775
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-15 Score=137.21 Aligned_cols=282 Identities=18% Similarity=0.294 Sum_probs=188.1
Q ss_pred eeEEEEEEEECCCcE----------EEEEeccC-----CccCcccHHHHHHHHHH-HhHHHcCC--CCCCHHHHHHHHHh
Q 015161 74 VENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAG 135 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~ 135 (412)
.++|.|.++|+.|+. |.=|+-.+ ..|.+-.+..++..+.+ +.|.++++ ++.+...+.+.|..
T Consensus 17 nPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~ 96 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIE 96 (433)
T ss_pred CCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHh
Confidence 478999999998843 22222111 11334456677777754 78999987 66777777777765
Q ss_pred hcCC---CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC---CCC----eeeeceeecCC--------------CH-
Q 015161 136 LLPG---HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN----TITTDITIPIV--------------SP- 190 (412)
Q Consensus 136 ~~~g---~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg---~~~----~i~~~~~i~~~--------------~~- 190 (412)
+-.. ..+. .+|+-||.+|+..+-|-..|+|||+.+.+ ..+ +||.+..+... -|
T Consensus 97 LDGTeNKsklG--aNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ 174 (433)
T KOG2670|consen 97 LDGTENKSKLG--ANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPV 174 (433)
T ss_pred ccCCccccccc--chhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheeccc
Confidence 3211 1121 26899999999999999999999998753 332 23333222110 01
Q ss_pred -HHHHHHHHHHHHcCCCEEe-----------EecC------CChh---HHHHHH-HHHHHhC--CCcEEEEeCCC-----
Q 015161 191 -AEAAELASKYRKQGFTTLK-----------LKVG------KNLK---EDIEVL-RAIRAVH--PDSSFILDANE----- 241 (412)
Q Consensus 191 -~~~~~~~~~~~~~Gf~~~K-----------iKvG------~~~~---~D~~~v-~avr~~~--~~~~l~vDaN~----- 241 (412)
.+-.+++.++=.+-|.++| ..|| +++. +-++.+ +++++++ .++.|-+|...
T Consensus 175 ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~ 254 (433)
T KOG2670|consen 175 GADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYK 254 (433)
T ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhc
Confidence 0112222222222254444 2233 3343 344443 5666665 36888888542
Q ss_pred -----------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHH
Q 015161 242 -----------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLD 302 (412)
Q Consensus 242 -----------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~ 302 (412)
.++.++...+.+. +.+|++ +-||+|+..|||+.+.++.. ..++.|.+|. .+++++
T Consensus 255 dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpk 328 (433)
T KOG2670|consen 255 DGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPK 328 (433)
T ss_pred CCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHH
Confidence 1356666555544 678886 59999999999999999864 4789998876 688999
Q ss_pred HHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCC
Q 015161 303 DVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 303 ~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~ 365 (412)
.++++++..+|+.+.+|++++| +|++++.+.+|++.|..+|+++.. ||.- .+.++|..++.
T Consensus 329 ri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeD--tFIaDL~VGl~ 391 (433)
T KOG2670|consen 329 RIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETED--TFIADLVVGLG 391 (433)
T ss_pred HHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCccc--chHHHhhhhhc
Confidence 9999999999999999999999 999999999999999999998763 5543 34556655543
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=118.20 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=60.8
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC
Q 015161 222 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 222 ~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 295 (412)
||+++|++ ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999995 39999999999999999985 689999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=126.59 Aligned_cols=287 Identities=17% Similarity=0.216 Sum_probs=190.4
Q ss_pred eeEEEEEEEECCCcEEEEEeccCCc--cCccc----HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcchhhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLPH--VTAED----QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFASQL 146 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~~--~~~e~----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~~~ 146 (412)
.+.+.|.+..++|..=||.+...-+ -.+.+ .+..+..++ .+.|+|+|+|....-+.......+..++.. +.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~L--ht 127 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLL--HT 127 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcc--hH
Confidence 4678888889999999999875321 11111 111222333 378999999876543332222222333433 35
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CCeeeeceeecCC---CHHHHHHHH---------HHHHHcCCCEE
Q 015161 147 KVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPIV---SPAEAAELA---------SKYRKQGFTTL 208 (412)
Q Consensus 147 ~a~saId~Al~Dl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~~---~~~~~~~~~---------~~~~~~Gf~~~ 208 (412)
+.+.++..||.|+.+-+.+.--.+.+... ..++|++...+.. ..+.+.-.. ....+-||...
T Consensus 128 AvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~ 207 (410)
T COG3799 128 AVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGE 207 (410)
T ss_pred HHHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchH
Confidence 68999999999999888776655554322 2356665433221 111111111 11112233333
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHcC--CCCCceeecCCCC----CCHHH
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYEM--GVTPVLFEQPVHR----DDWEG 276 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~------~~~~~~A~~~~~~l~~~--~l~~~~iEeP~~~----~d~~~ 276 (412)
|+.- -++|-.+|...++.-+..-.|-+|..+ ++++.....|+.+|++. ++ |.+||-|... .+++.
T Consensus 208 ~l~E--yv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~ 284 (410)
T COG3799 208 KLRE--YVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRL 284 (410)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHH
Confidence 3221 123444444444333445678899886 46777777888888752 43 4699999984 45777
Q ss_pred HHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHH
Q 015161 277 LGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLA 353 (412)
Q Consensus 277 ~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~ 353 (412)
|+++++.+. ..+++.|..||.|.+.+|+..+.++++++.+|+|..-+| |.+..+...+|+.+.+..+.|+ +.||.++
T Consensus 285 ~a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvS 364 (410)
T COG3799 285 LAAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVS 364 (410)
T ss_pred HHHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchh
Confidence 888777654 356799999999999999999999999999999999999 9999999999999999998876 5799999
Q ss_pred HHHHHHHHccCC
Q 015161 354 MGFAGHLSAGLG 365 (412)
Q Consensus 354 ~~a~~hlaaa~~ 365 (412)
...++|++.+..
T Consensus 365 Ar~cvHValAt~ 376 (410)
T COG3799 365 ARTCVHVALATR 376 (410)
T ss_pred hhhhhhhhhhhc
Confidence 999999987653
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=111.12 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=108.5
Q ss_pred cC-CCEEeEecCCChhHHHHHHHHHH----HhC---CCcEEEEeCCCCC------CHHHHHHHHHHHHc--CCCCCceee
Q 015161 203 QG-FTTLKLKVGKNLKEDIEVLRAIR----AVH---PDSSFILDANEGY------KPQEAVEVLEKLYE--MGVTPVLFE 266 (412)
Q Consensus 203 ~G-f~~~KiKvG~~~~~D~~~v~avr----~~~---~~~~l~vDaN~~~------~~~~A~~~~~~l~~--~~l~~~~iE 266 (412)
+| |..++ |+|.+-+.=.+.++=++ +.+ ..-.|-+|..+.. +++....|+.+|++ .++ ...||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~-~L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPF-KLRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCC-eeeee
Confidence 44 77788 99965444444333222 222 3457889998743 56777788888865 233 25999
Q ss_pred cCCCCCC----HHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 267 QPVHRDD----WEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 267 eP~~~~d----~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
.|+...+ ++.+++|++.+++ .+++.|.+||.|.+++|++.+.+++++|.+|+|..-.| +..+.+.+-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 6778888877663 45689999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CcchHHHHHHHHHHHccCC
Q 015161 341 NLMIGG-MVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 341 ~~~~~~-~~es~i~~~a~~hlaaa~~ 365 (412)
..+.|+ +.||..+...++|+|.|..
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred ceeecccccccchhHHHHHHHHHhcC
Confidence 999877 5799999999999998765
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=114.83 Aligned_cols=118 Identities=22% Similarity=0.453 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecC
Q 015161 243 YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 243 ~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.+.+|-+.+... +++|++ ..||+|+..+||+++++|++.+.. .+-|.+|. .++++..+++.++.++++.+.+|+
T Consensus 133 ~s~delid~y~~li~~YPI--vsIEDpf~edD~e~w~~lt~~~g~--~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~ 208 (295)
T PF00113_consen 133 KSSDELIDYYKDLIKKYPI--VSIEDPFDEDDWEGWAKLTKRLGD--KIQIVGDDLFVTNPKRIKKGIEKKACNALLLKP 208 (295)
T ss_dssp EEHHHHHHHHHHHHHHS-E--EEEESSS-TT-HHHHHHHHHHHTT--TSEEEESTTTTT-HHHHHHHHHCT--SEEEE-H
T ss_pred cCHHHHHHHHHHHHHhcCe--EEEEccccccchHHHHHHHHhhhc--ceeeecccccccchhhhhccchhhhccchhhhh
Confidence 578888887766 578986 699999999999999999975422 38888887 677899999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
+++| +|++++++.+|+++|..+++++.. ||. -.+.+|||.|++.
T Consensus 209 NQigTvte~lea~~~a~~~g~~~vvS~rsgEte--D~~iadLaVg~~a 254 (295)
T PF00113_consen 209 NQIGTVTETLEAVKLAKSAGWGVVVSHRSGETE--DTFIADLAVGLGA 254 (295)
T ss_dssp HHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S----HHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHHCCceeeccCCCCCcC--chhHHHHHhccCc
Confidence 9999 999999999999999999998764 543 3567788887764
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=105.64 Aligned_cols=121 Identities=23% Similarity=0.385 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC------------ChhHH-------------HHHHHHHHHh-CCCcEEEEeCC-----
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK------------NLKED-------------IEVLRAIRAV-HPDSSFILDAN----- 240 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~------------~~~~D-------------~~~v~avr~~-~~~~~l~vDaN----- 240 (412)
+.++.++++.+.||..++++.+. +.+.| .+.+++||++ ++++.+.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34667778888999999999752 22333 7899999997 78999999855
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCceee-----------cCC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 241 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
++|+.++++++++.|+++++ .||| .|+ +.++.+.++++++ .+++||++++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 89999999999999999987 4999 466 3445566666664 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|++++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999743
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.2e-09 Score=97.07 Aligned_cols=144 Identities=21% Similarity=0.301 Sum_probs=119.1
Q ss_pred HHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCC
Q 015161 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPD 232 (412)
Q Consensus 169 ~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~ 232 (412)
..+++......|+..++...++++..+.++.+.+.||..+++++|. +++...+.++++|++.+
T Consensus 45 ~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~- 123 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP- 123 (231)
T ss_pred HHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-
Confidence 3445544567788888888899999998888888899999999873 56667788999998754
Q ss_pred cEEEEeCCCCCCHH-HHHHHHHHHHcCCCCCcee-------ec-CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH
Q 015161 233 SSFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303 (412)
Q Consensus 233 ~~l~vDaN~~~~~~-~A~~~~~~l~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 303 (412)
..+.++.|.+|+.+ ++.++++.+++.++. +| ++ +..+.+++..+++++ ..++||.++..+.+.++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d 197 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLED 197 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHH
Confidence 77899999999876 899999999999975 88 76 766678888877764 67899999999999999
Q ss_pred HHHHHHcCCCCEEEec
Q 015161 304 VKKIVKGNLADVINIK 319 (412)
Q Consensus 304 ~~~~i~~~a~d~v~ik 319 (412)
+.++++.+.+|.+++=
T Consensus 198 ~~~~l~~~gad~V~ig 213 (231)
T cd02801 198 ALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999998778998763
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=93.17 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC---------------------C----hhHHHHHHHHHHHh-CCCcEEEEeCC-----
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFILDAN----- 240 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~D~~~v~avr~~-~~~~~l~vDaN----- 240 (412)
+..+.|+++++.||..+.|..+. + .+-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34666778888999999998761 1 23446789999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCceee-------cCCCC---C---------CHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D---------DWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP~~~---~---------d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
.+|+.++++++++.|++.++. ||| +|... + .++..++++ +.+++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 589999999999999999974 999 66532 1 023334454 467999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015161 301 LDDVKKIVKGNLADVINI 318 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~i 318 (412)
++++.++++.+.+|++.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999854
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-07 Score=76.50 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=80.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (412)
+|++|..+.+- .|.| .+++-|+|++++|..|.+-++... .|.+..+..++..
T Consensus 1 ~I~~v~~r~Il--------DsrG----~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREIL--------DSRG----NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEEE---------TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEEE--------cCCC----CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 57888877763 4555 488999999999999988876532 1233457777877
Q ss_pred HHH-HhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 111 ASE-ACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
+++ +.|.|+|+++.+...+.+.|...-...... ...++.-|+.+|++-+.|+..|+|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 764 899999999999998888776542211110 01268899999999999999999999986
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-07 Score=88.79 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCEEeEecCC------------Ch-------------hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK------------NL-------------KEDIEVLRAIRAV-HPDSSFILDAN------ 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~------------~~-------------~~D~~~v~avr~~-~~~~~l~vDaN------ 240 (412)
..+.++++.+.||..++|+.+. +. +...+.+++||++ ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4666778888999999999861 11 2236889999997 78888888877
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceee-------cCCC---------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 304 (412)
.+|+.++++++++.|+++++. ||+ +|.. ..+++..+++++ .+++||++.+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHH
Confidence 458899999999999999974 884 6543 234455555553 578999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 015161 305 KKIVKGNLADVINI 318 (412)
Q Consensus 305 ~~~i~~~a~d~v~i 318 (412)
.++++.+.+|++.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988998854
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-07 Score=88.36 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC----------C-----------C----hhHHHHHHHHHHHh-CCCcEEE-----EeCC-
Q 015161 193 AAELASKYRKQGFTTLKLKVG----------K-----------N----LKEDIEVLRAIRAV-HPDSSFI-----LDAN- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG----------~-----------~----~~~D~~~v~avr~~-~~~~~l~-----vDaN- 240 (412)
..+.|+.+++.||..++++.+ + + .+...+.+++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 456677788899999999863 1 1 34567889999997 6776654 5654
Q ss_pred CCCCHHHHHHHHHHHHcCCCC-----CceeecCCCCCC--------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998842 125688876432 22334454 4689999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|++++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999754
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=60.67 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=66.9
Q ss_pred ceeccCceeee-eeEEEEEEEECCCcEEEEEeccCC--ccCccc----HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHH
Q 015161 63 PFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLP--HVTAED----QQTAMVKAS-EACEVLKESPAMALGSVFGVVA 134 (412)
Q Consensus 63 pf~~a~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~ 134 (412)
|.+.+..++.. -+.+.|-+..+||.+.||.|...- +..+.. ....+..++ .+.|.|+|++..+.....+.+.
T Consensus 38 P~TpGF~sVRq~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d 117 (159)
T PF05034_consen 38 PVTPGFKSVRQAGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFD 117 (159)
T ss_dssp --STT-SSSEEEEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHH
T ss_pred CCCCCchhhhccCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHH
Confidence 44444444333 578999999999999999998631 111111 122233343 5899999999999988888887
Q ss_pred hhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 135 GLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 135 ~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
....|..+ +.+.+.+|..||+|+.|+..+.-..+.+
T Consensus 118 ~~~~g~rl--htAiRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 118 ELVDGKRL--HTAIRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp H-ETTEE----HHHHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred hcccCCcc--hhHHHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 76544433 4578999999999999999888766654
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0035 Score=61.52 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=103.3
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC-CCcEEEEeCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDAN 240 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~-~~~~l~vDaN 240 (412)
..|+...+...+|+++++.++.+.+.||..+-+.+|. +++.-.+.++++|++. +++.+.+=..
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 3466677777899999998888888999999998872 2334455678888864 4566666655
Q ss_pred CCCC-HHHHHHHHHHHHcCCCCCc-----eeecCCCC--CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 241 EGYK-PQEAVEVLEKLYEMGVTPV-----LFEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 241 ~~~~-~~~A~~~~~~l~~~~l~~~-----~iEeP~~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
-+|+ .+++.++++.+++.|+... .-+|.... -||+..+++.+ ..++||.+.=.+.+.+++.++++...
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccC
Confidence 5775 4568899999999876411 12333222 26776777764 57899999889999999999998888
Q ss_pred CCEEEecCCCCc
Q 015161 313 ADVINIKLAKVG 324 (412)
Q Consensus 313 ~d~v~ik~~~~G 324 (412)
+|.+.+=-.-+|
T Consensus 218 ~DgVmiGRg~l~ 229 (312)
T PRK10550 218 CDAVMIGRGALN 229 (312)
T ss_pred CCEEEEcHHhHh
Confidence 999987543333
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0073 Score=59.61 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=98.9
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+...+...+|+++++.++...+.||..+-+.+|. +++.-.+.+++++++. ++.+.+=.+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 44456667789999888887778899999998882 2444455677777754 334444444667
Q ss_pred CH--HHHHHHHHHHHcCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015161 244 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 244 ~~--~~A~~~~~~l~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 313 (412)
+. .+++++++.+++.|+. +| +|... ..+|+..+++++ .+++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 64 3688999999998874 55 33322 246766777654 678999998899999999999987779
Q ss_pred CEEEecCCCCc
Q 015161 314 DVINIKLAKVG 324 (412)
Q Consensus 314 d~v~ik~~~~G 324 (412)
|.+++=-.-+|
T Consensus 219 dgVmiGR~~l~ 229 (321)
T PRK10415 219 DALMIGRAAQG 229 (321)
T ss_pred CEEEEChHhhc
Confidence 99987544443
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=57.59 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=108.1
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
..|+...+...+|+.+++.++...+.||..|-+.+|. +++.-.+.|++++++.+++.+.|-..-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3445666777789889999999999999999999882 455556778899988557888888888
Q ss_pred CCCHHH--HHHHHHHHHcCCCCCceeec------CCCCCCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQE--AVEVLEKLYEMGVTPVLFEQ------PVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~--A~~~~~~l~~~~l~~~~iEe------P~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+|+.++ +.++++.+++.|....++=- =..+-||+..+++++ ..+ +||.+.-.+.+.++.+++++...
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~tg 221 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYTG 221 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhhC
Confidence 997665 77888888887764222211 111247888888875 445 99999999999999999999888
Q ss_pred CCEEEecCCCCc
Q 015161 313 ADVINIKLAKVG 324 (412)
Q Consensus 313 ~d~v~ik~~~~G 324 (412)
+|.+.+--.-.|
T Consensus 222 ~DgVMigRga~~ 233 (323)
T COG0042 222 ADGVMIGRGALG 233 (323)
T ss_pred CCEEEEcHHHcc
Confidence 999987644444
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.049 Score=54.02 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.8
Q ss_pred HHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C
Q 015161 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 231 (412)
Q Consensus 170 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~ 231 (412)
++|.-....-|+...+...+|+++++.++.+.+.||..|-+..|. +++.-.+.++++|++. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344333334566777888899999888888888899999988771 3344456778888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee--------cC--------CCCCCHHHHHHhHHHhhcc-cCCeEE
Q 015161 232 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 293 (412)
Q Consensus 232 -~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~~~~-~~ipIa 293 (412)
.+++++-....-+.++++++++.+++.|+. +|. |- +++-+|+..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223457788999999998875 442 11 12345777777753 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 294 ADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 294 ~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.=.+.+++++.++++ + +|.+++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9888999999999997 3 8888764
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=58.06 Aligned_cols=135 Identities=23% Similarity=0.368 Sum_probs=92.6
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC----------------CChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
.-|+...+...+|+.+.+.++...+.||..|-+.+| .+++.-.+.|+++++..+ +.+.+-.--
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~ 131 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRL 131 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEES
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEeccc
Confidence 345666777788999888877766679999999988 245555667888888644 666666666
Q ss_pred CCC--HHHHHHHHHHHHcCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 242 GYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 242 ~~~--~~~A~~~~~~l~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
+|+ .++.+++++.+++.|+. +| +|-.. +-||+..+++++ ..++||.+.=.+.+.+|+.++++.-
T Consensus 132 g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d~~~~~~~t 205 (309)
T PF01207_consen 132 GWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPEDAERMLEQT 205 (309)
T ss_dssp ECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHHHHHHCCCH
T ss_pred ccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHHHHHHHHhc
Confidence 776 67889999999999874 54 33333 457888888875 6779999999999999999999875
Q ss_pred CCCEEEec
Q 015161 312 LADVINIK 319 (412)
Q Consensus 312 a~d~v~ik 319 (412)
.+|.+.+=
T Consensus 206 g~dgvMig 213 (309)
T PF01207_consen 206 GADGVMIG 213 (309)
T ss_dssp -SSEEEES
T ss_pred CCcEEEEc
Confidence 68988764
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.017 Score=55.91 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=94.4
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-----------~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
.|+..++...++++..+.++.+.+.|+..+-+.++. +++.-.+.++++|+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 355556666688888888888888899999998771 2223345678888765 6778888888899999
Q ss_pred HHHHHHHHHcCCCCCceeecC---------------CCC-------------CCHHHHHHhHHHhhccc--CCeEEeCCC
Q 015161 248 AVEVLEKLYEMGVTPVLFEQP---------------VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADES 297 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP---------------~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs 297 (412)
..++++.+++.++. +|.=+ ... ..++..++++ +.. ++||.+.=-
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998864 55521 000 0122233333 345 799999888
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015161 298 CRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.+.+++.+++..| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999987 787755
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.047 Score=51.21 Aligned_cols=131 Identities=14% Similarity=0.217 Sum_probs=93.2
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++...+++++.+.++.. +.++..|-+-+|. +++.-.+.++++++. ++.+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 556677777899987776664 6689999988762 444455567777754 344444444445
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCC---CHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+..+.+++++.+++.|....-+.+=.+.. +|+..+++++ .. .+||.+.=.+.+.+|+.++++.| +|.+++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 65677899999999987655666544432 5666776654 45 49999999999999999999965 788876
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.056 Score=53.88 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCEEeEecC---------------------CChh----HHHHHHHHHHHh-CCCc--EEEEeC----C
Q 015161 193 AAELASKYRKQGFTTLKLKVG---------------------KNLK----EDIEVLRAIRAV-HPDS--SFILDA----N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~~----~D~~~v~avr~~-~~~~--~l~vDa----N 240 (412)
.++.|+++.+.||..+.|..+ .+++ --.+.+++||++ ++++ .+++-. .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 355667778899999999983 1222 224678999997 6664 455544 3
Q ss_pred CCCCHHHHHHHHHHHHcCC-CCCceeec-------C------CCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 EGYKPQEAVEVLEKLYEMG-VTPVLFEQ-------P------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~-l~~~~iEe-------P------~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
++++.++++++++.|++.+ +. |++= + .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4588999999999999987 54 6651 1 111 1233333443 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015161 301 LDDVKKIVKGNLADVINI 318 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~i 318 (412)
++++.++++.+.+|.+.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999854
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.06 Score=53.02 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=93.7
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
..|+...+...+++++.+.++.+.+.||..|-+..|. +++.-.+.++++|+..+ +.+.+-...
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRI 140 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEc
Confidence 4566677778899999999888888999999998872 12333456777777532 344444444
Q ss_pred CCCH--HHHHHHHHHHHcCCCCCceee-------cCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 242 GYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 242 ~~~~--~~A~~~~~~l~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
+|+. .+..++++.+++.|+. +|- +-.+ +-+++..++++ +..++||.+.=.+.+.+++.++++..
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 5542 3467888899888764 442 1111 22465566665 36789999999999999999999777
Q ss_pred CCCEEEec
Q 015161 312 LADVINIK 319 (412)
Q Consensus 312 a~d~v~ik 319 (412)
.+|.+++=
T Consensus 215 gad~Vmig 222 (319)
T TIGR00737 215 GCDGVMIG 222 (319)
T ss_pred CCCEEEEC
Confidence 79998773
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.041 Score=55.64 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCEEeEec---CC-------------------Chh----HHHHHHHHHHHh-CCCcEE--EEeC----
Q 015161 193 AAELASKYRKQGFTTLKLKV---GK-------------------NLK----EDIEVLRAIRAV-HPDSSF--ILDA---- 239 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKv---G~-------------------~~~----~D~~~v~avr~~-~~~~~l--~vDa---- 239 (412)
..+.|+.+.+.||..+.|.. |. +++ --.+.|++||++ ++++.+ ++..
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 35566777789999999997 41 122 234678999997 666443 3332
Q ss_pred --------------CCCCCHHHHHHHHHHHHcCCCCCceeec-------CC---CCCC-HHH-HHHhHHHhhcccCCeEE
Q 015161 240 --------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 240 --------------N~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~~~~~~ipIa 293 (412)
.++++.++++++++.|++.++. |++= +. ++.. .++ +..+.+.+++..++||.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 3478999999999999988764 6632 11 0000 000 11122223346789999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 294 ADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 294 ~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+-=.+.++++..++++.+.+|.+.+
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeee
Confidence 9888999999999999999999854
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.055 Score=52.82 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=91.7
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcC-CCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~G-f~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~ 245 (412)
+|+..++...++++..+.++++.+.| |..+-+.++ .+++.-.+.++++|++. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 34556666678899988888888888 999988553 23445566788888865 5667776654 44
Q ss_pred HHHHHHHHHHHcCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhcccCCeEEeCCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 297 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs 297 (412)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778888889887753 331 111 111233444444 356899999989
Q ss_pred CCCHHHHHHHHHcCCCCEEEec
Q 015161 298 CRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.+.+++.+++..| +|.+++=
T Consensus 243 I~~~~da~~~l~aG-Ad~V~ig 263 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVG 263 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEc
Confidence 99999999999988 6888764
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.082 Score=52.08 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=96.6
Q ss_pred HhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C-
Q 015161 171 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P- 231 (412)
Q Consensus 171 LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~- 231 (412)
+|.-.....|+...+...+|+++++.++.+.+.||..|-+.+|. +++.-.+.|++++++. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433344566777888899999888888888899999998872 3344456678888753 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee--------cCCCC--------CCHHHHHHhHHHhhccc-CCeEEe
Q 015161 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QPVHR--------DDWEGLGHVSHIAKDKF-GVSVAA 294 (412)
Q Consensus 232 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE--------eP~~~--------~d~~~~~~l~~~~~~~~-~ipIa~ 294 (412)
.+++++-.+..=+.++++++++.+++.|+. +|. |-+.. -+|+..+++.+ .. ++||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 345554211111346788999999988874 442 32221 25666666653 34 799999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.=.+.+.+|+.+++. .+|.+++=-
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigR 224 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGR 224 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECH
Confidence 888999999999985 489987743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.084 Score=52.94 Aligned_cols=119 Identities=27% Similarity=0.358 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN------ 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l~vDaN------ 240 (412)
..+.|+.+++.||..+-|+.+. +++ --.+.+++||++ ++++.+.+=.|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3556677788999999999752 122 234678999997 77754443222
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCCCceeec-------C-CCCCCHHHHHHhHHHhhcccCCeEEeCCCC----------
Q 015161 241 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQ-------P-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 298 (412)
Q Consensus 241 ----~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---------- 298 (412)
.+.++++++++++.|++.++. ||+= | ....++.-.++++ +..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCccccccccccc
Confidence 247889999999999988764 5532 2 2111222222333 4568899775554
Q ss_pred --------CCHHHHHHHHHcCCCCEEE
Q 015161 299 --------RSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 299 --------~~~~~~~~~i~~~a~d~v~ 317 (412)
.++++..++++.+.+|.+.
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeeh
Confidence 5899999999999899873
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.14 Score=48.19 Aligned_cols=131 Identities=11% Similarity=0.185 Sum_probs=88.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-C---------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++...+++++.+.++...+ +...+-+-+| + +++.-.+.++++|+. ++.+.+=...+|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 44455666688888877776644 4588888777 2 244445667888875 455665555568
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCC--CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVH--RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~--~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+ ++.+++++.+++.|+...-+..-.+ .-|++..+++ +.++||.+.=.+.+.+++.+++..| +|.+++--.
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 7788899999998864212221111 2244444433 1579999999999999999999977 899887543
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.084 Score=53.00 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEe-------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILD------- 238 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vD------- 238 (412)
..+.|+.+++.||..+-|+.+. ++ +--+|.|++||++ +++ +.+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556778888999999999751 12 1234678999997 655 334442
Q ss_pred CCCCCCHHH-HHHHHHHHHcCCCCCceeecCCCCCC-HHH-HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 239 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRDD-WEG-LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 239 aN~~~~~~~-A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~-~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
..++++.+| ++++++.|++.++. ||+=-.+... ... ...+.+.+++.+++||...-. .+++...++++.+.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 234688888 89999999988764 6653221100 000 112222334467888887655 48999999999999999
Q ss_pred EEe
Q 015161 316 INI 318 (412)
Q Consensus 316 v~i 318 (412)
+.+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 743
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.14 Score=49.70 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=89.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.++++|+.. ++.+.+-.+ .+.++
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~~ 167 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVTD 167 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCchh
Confidence 4555666667888888888888889999999765 23444556788888864 455555543 33446
Q ss_pred HHHHHHHHHcCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhcccCCeEEeCCCCC
Q 015161 248 AVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADESCR 299 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~ 299 (412)
..++++.+++.++. .|- .|. .+..++..++++ +.+++||.+.=.+.
T Consensus 168 ~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~ 241 (296)
T cd04740 168 IVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIA 241 (296)
T ss_pred HHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCC
Confidence 77888888887653 221 111 011123344443 45689999999999
Q ss_pred CHHHHHHHHHcCCCCEEEecCC
Q 015161 300 SLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 300 ~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+++.+++..| +|.+++=-.
T Consensus 242 ~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 242 SGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CHHHHHHHHHcC-CCEEEEchh
Confidence 999999999988 699887533
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.15 Score=56.40 Aligned_cols=144 Identities=20% Similarity=0.282 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEeC----C
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA----N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~~l--~vDa----N 240 (412)
..+.++++++.||..+-|..+. ++ +--++.+++||++ ++++.+ ++-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3556677788999999998761 12 2235678999997 566433 3332 3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeec--------CCCCCCHHHH-HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
++|+.++++++++.|++.++. ||+= +.+.. ..++ ..+.+.+++..++||..-=.+.+++++.++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 578999999999999998864 6642 11000 0001 1122233446789999988899999999999999
Q ss_pred CCCEEEecCCCCcHHHHHHHHHHHHHcCCc
Q 015161 312 LADVINIKLAKVGVLGALEIIEVVRASGLN 341 (412)
Q Consensus 312 a~d~v~ik~~~~Git~~l~i~~~A~~~gi~ 341 (412)
.+|.+.+--.. +..---+...+++.+..
T Consensus 710 ~~D~v~~gR~~--l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 710 RADLCALARPH--LADPAWTLHEAAEIGYR 737 (765)
T ss_pred CcceeeEcHHH--HhCccHHHHHHHHcCCC
Confidence 99997542111 22111234445666664
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.21 Score=49.58 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHhCC-CcEEEEe----CCCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVHP-DSSFILD----ANEGY 243 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~~~-~~~l~vD----aN~~~ 243 (412)
.+.|+.+.+.||..+.|..+. +++. -.+.+++||++.+ .+.+++- .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 555677788999999999761 2222 2356788888632 2333332 34588
Q ss_pred CHHHHHHHHHHHHcCCCCCceeec--------CCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||..-=.+.++++..++++.+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 999999999999988764 5542 111 1123333334 4467899988778899999999999998
Q ss_pred CCEEE
Q 015161 313 ADVIN 317 (412)
Q Consensus 313 ~d~v~ 317 (412)
+|.|.
T Consensus 299 ~D~V~ 303 (337)
T PRK13523 299 ADLIF 303 (337)
T ss_pred CChHH
Confidence 99863
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.27 Score=47.87 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=97.5
Q ss_pred eeceeecCCCHHHHHHHHHHHHHc--CCCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~--Gf~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~ 245 (412)
|+..++...+++++.+.++.+.+. ++..|-+-+| .+++.-.+.++++|+.. ++.+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 445566566788888888777654 4888998877 13444456778888764 4567766654 44
Q ss_pred HHHHHHHHHHHcCCCCCceee---------------cCCC---------CCC----HHHHHHhHHHhhcccCCeEEeCCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFE---------------QPVH---------RDD----WEGLGHVSHIAKDKFGVSVAADES 297 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iE---------------eP~~---------~~d----~~~~~~l~~~~~~~~~ipIa~dEs 297 (412)
++..++++.+++.++. +|. +|.. +.. ++...++ ++..++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~GG 242 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVGG 242 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEECC
Confidence 6778899999988864 553 1100 000 1222333 3467899999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEecCCCC--c--HHH-HHHHHHHHHHcCCc
Q 015161 298 CRSLDDVKKIVKGNLADVINIKLAKV--G--VLG-ALEIIEVVRASGLN 341 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~ik~~~~--G--it~-~l~i~~~A~~~gi~ 341 (412)
+.+.+++.+++..| +|.+++=-.-+ | +.. ...+.++.+++|..
T Consensus 243 I~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 243 ITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999999987 88887643222 2 222 22355666666653
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.26 Score=49.39 Aligned_cols=124 Identities=22% Similarity=0.233 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEe---C-C
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILD---A-N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vD---a-N 240 (412)
..+.++++++.||..+.|+-.. ++ +--+|.|++||++ +++. .+++= . +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3566778888999999998641 12 2345779999997 6663 34432 2 2
Q ss_pred -CCCCHHHHHHHHHHHHcCC-CCCc----eeecCCCCCCHH--HH-HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 -EGYKPQEAVEVLEKLYEMG-VTPV----LFEQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~-l~~~----~iEeP~~~~d~~--~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
.+|+.++++++++.|++.+ +... |-.++-+.-... ++ ......++....+|+.+--.+++++....+++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 4311 112221111111 11 1222222345679999988899999999999999
Q ss_pred CCCEE
Q 015161 312 LADVI 316 (412)
Q Consensus 312 a~d~v 316 (412)
.+|.+
T Consensus 311 ~aDlV 315 (363)
T COG1902 311 RADLV 315 (363)
T ss_pred CCCEE
Confidence 89987
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.24 Score=49.54 Aligned_cols=119 Identities=17% Similarity=0.261 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC---------------------CChhH----HHHHHHHHHHh-C----CCcEEEE--eC-
Q 015161 193 AAELASKYRKQGFTTLKLKVG---------------------KNLKE----DIEVLRAIRAV-H----PDSSFIL--DA- 239 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~~~----D~~~v~avr~~-~----~~~~l~v--Da- 239 (412)
..+.|+++++.||..+-|..+ .+++. -.+.+++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 456677788899999999864 12222 24568899997 5 5655443 32
Q ss_pred ---CCCCCHHHHHHHHHHHHcCCCCCceeec-------CCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 240 ---NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 240 ---N~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
.++++.++++++++.|++.++. ||+= +.. ....+..+++++.. ..++||.+-=.++++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3577899999999999998874 7761 111 11223334444321 13689988778899999999
Q ss_pred HHHcCCCCEE
Q 015161 307 IVKGNLADVI 316 (412)
Q Consensus 307 ~i~~~a~d~v 316 (412)
+++.+ +|.+
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99875 7765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.32 Score=46.31 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=99.4
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------------C
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG--------------Y 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~--------------~ 243 (412)
|+....++.+.+++ +++...|... +-+|...-.|.+.++.+.+.++ .+.+.+|++.+ |
T Consensus 76 pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw 149 (254)
T TIGR00735 76 PLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGG 149 (254)
T ss_pred CEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCC
Confidence 33444456666554 4445567655 4567555567788888888754 57889997532 2
Q ss_pred ---CHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015161 244 ---KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 314 (412)
Q Consensus 244 ---~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d 314 (412)
+..+.+++++.+++.++.-.-+ ..+. ..|++-++++.+ .+++||.+.=-+.+++++.++++.+.+|
T Consensus 150 ~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 150 RESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 2345678889999888651122 1122 234666677654 5789998888889999999999988788
Q ss_pred EEEecCCC-CcHHHHHHHHHHHHHcCCcE
Q 015161 315 VINIKLAK-VGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 315 ~v~ik~~~-~Git~~l~i~~~A~~~gi~~ 342 (412)
.+.+--.. -|-....++.+.++++|+++
T Consensus 225 gv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 225 AALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred eeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 87553322 24123556778888999875
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.71 Score=45.92 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeCC-----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN----- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDaN----- 240 (412)
..+.|+.+++.||..+.+..+. ++ +--.+.+++||++ +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3556677888999999998762 12 2234678999986 554 44444332
Q ss_pred --CCCCHHHHHHHHHHHHcCCCCCceeec--CC-----CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
.+.+.++++++++.|++.++. +|+= .. ....++..++++ +.+++||..--.+. +++..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 245889999999999988753 5552 11 122344444554 35789998876665 99999999999
Q ss_pred CCCEEEe
Q 015161 312 LADVINI 318 (412)
Q Consensus 312 a~d~v~i 318 (412)
.+|.+.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 9999854
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.29 Score=45.02 Aligned_cols=96 Identities=11% Similarity=0.204 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++++.++.|.+.|+. .+|=++...+. +..+++++. ..++.|.+| ++.+.++++++++.|+ +++ +-|..
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCCC
Confidence 789999999999999986 99999986554 446666542 224667666 7899999999999985 555 22222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
..++++.|+++|+++++|++.-|.+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEI 114 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHH
Confidence 2578899999999999999976655
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.86 Score=45.90 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCC----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDAN---- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vDaN---- 240 (412)
..+.|+++.+.||..+-|..+. ++ +--.+.|++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 4566777888999999998762 12 2234678999997 6674 4444332
Q ss_pred --CCCCHHHHHHHHHHHHcCCCC-----CceeecC-CC----CC--CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 241 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
++++.++++++++.|++. +. .-+.+.. .. +. .++..+++ ++..++||..-=.+.++++..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0011211 10 11 12222333 3467899988778899999999
Q ss_pred HHHcCCCCEEEe
Q 015161 307 IVKGNLADVINI 318 (412)
Q Consensus 307 ~i~~~a~d~v~i 318 (412)
+++.+.+|.+.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999754
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.46 Score=44.94 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=77.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeE-------ecC-------CChhHHHHHHHHHHHh--C-CCcEE--EEeCCCC--CC
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKL-------KVG-------KNLKEDIEVLRAIRAV--H-PDSSF--ILDANEG--YK 244 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~Ki-------KvG-------~~~~~D~~~v~avr~~--~-~~~~l--~vDaN~~--~~ 244 (412)
+..+++++.+.++++.+.|...+|+ |.| -+.++-++++++++++ . +++.| +.|+-.. ..
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 4456777888888999999999999 222 2566778889999986 3 35544 5676544 67
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 295 (412)
.++|++.++...+.|-...|+|-|. +.+.++++.+ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999887667999776 5566777764 467888765
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.62 Score=43.41 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.++|++.++.|-+.|+. .+|=++...+ .+.+++|++.++++. ++-|.+| ++.+.++++.+++.|+ +++ +-|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA-~Fi-VsP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGA-NFI-VTPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCC-CEE-ECCC
Confidence 789999999999999986 9999987543 555666654332222 2445554 8899999999999985 554 2222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. -.++++.|+++|++++||++.-|.+
T Consensus 100 ~-----~~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 F-----NPDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2 1567899999999999999976655
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.62 Score=42.75 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+.+++++.++.|.+.|+. .+|=++...+ ++.++++++. .-++-|.+| ++.+.++++++++.|+ +++ +-|.
T Consensus 13 ~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~---~~~~~vGAG-TVl~~e~a~~ai~aGA-~Fi-vSP~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAE---VEEAIVGAG-TILNAKQFEDAAKAGS-RFI-VSPG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEeeE-eCcCHHHHHHHHHcCC-CEE-ECCC
Confidence 3789999999999999986 9999998655 3445555542 223556555 7899999999999985 554 2222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
. -.++++.|+++|+++++|++.-|.+..
T Consensus 85 ~-----~~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 85 T-----TQELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 2 257789999999999999997666533
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.55 Score=43.15 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
++++|+..++.|-+-|+. -||=|+...+. +..+++++. .-++-|.+| ++-+.+++.++++.|+-=++.|
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa~fiVsP---- 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGAQFIVSP---- 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCCCEEECC----
Confidence 689999999999999986 99999997654 556666642 224556555 7889999999999986433333
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
|++ -++++.|..+|++++||++.-|.+
T Consensus 93 -~~~--~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 93 -GLN--PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -CCC--HHHHHHHHhCCCcccCCCCCHHHH
Confidence 222 567899999999999999865544
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.75 Score=42.64 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++++.++.|.+-|+. .+|=++...+ ++.+++++++....-++-|.+| ++.+.++++++++.|+ +++. -|+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv-sP~~ 97 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV-SPSF 97 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-CCCC
Confidence 789999999999999986 9999998655 3446666542110013555555 8899999999999985 5542 3332
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. .++++.|+++|+++++|++..+.+
T Consensus 98 ~-----~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 98 N-----RETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred C-----HHHHHHHHHcCCCEECCcCCHHHH
Confidence 2 567888999999999999876554
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.76 Score=42.55 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.-++++|++.++.|.+.|+. .||=++...+ .+..+++++. ..++-|.+| ++.+.++++++++.|+ +++.. +
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aGA-~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAGA-QFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcCC-CEEEC-C
Confidence 45689999999999999986 9999987654 3445555532 234666666 6778899999999985 66532 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 321 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 321 ~~~Git~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
|+.+ ++++.|++++++++||++.-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 3333 7789999999999999986444
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.63 Score=46.33 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCCC---
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 241 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vDaN~--- 241 (412)
..+.|+.+++.||..+-|+.+. ++ +--++.|++||++ +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556778888999999999761 12 2235678999997 7775 56676654
Q ss_pred -CCCHHHHHHHHHHHHcCCCCCc------e--eecCCC--CCCHHHH--HHhHHHhhcccCCeEEeCCCCCCHHHHHHHH
Q 015161 242 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 242 -~~~~~~A~~~~~~l~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 308 (412)
+++.++..++++.+++.++... + ...|.. +.+.... ..+.+..+..+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 4456777667766665432100 1 112322 1111100 1122223346789999988899998899999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
+.+.+|.+-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999843
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.68 Score=42.32 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+.+++.+.++.|-+-|+. .+|=++...+. +.+++++++ .-++-|.+| ++.+.++++++++.|+ +++. -|
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~Fiv-SP- 87 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIV-SP- 87 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEE-ES-
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEE-CC-
Confidence 4578999999999999986 99999986654 445555543 335667666 7899999999999995 5442 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
|+ .-++++.|+++|++++||++.-|.+..
T Consensus 88 --~~--~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 88 --GF--DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp --S----HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 22 257789999999999999997666533
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.9 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..+.-+++|++.|-. .+==-++. ++.+.+.++++ ++.+|+.+|=.+. ..-+...++.+ +|-+.+.|..
T Consensus 34 Dv~aTv~QI~~L~~aG~d--IVRvtv~~~e~A~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~g-~~k~RINPGN 105 (361)
T COG0821 34 DVEATVAQIKALERAGCD--IVRVTVPDMEAAEALKEIKQ----RLNVPLVADIHFD-YRLALEAAECG-VDKVRINPGN 105 (361)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEecCCHHHHHHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhcC-cceEEECCcc
Confidence 355566777778887754 33333332 34556666654 6799999997755 55555666655 9999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 323 VG-VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 323 ~G-it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+| -.....+++.|+++|+++-+|--.
T Consensus 106 ig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 106 IGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 99 667899999999999999886543
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=2.3 Score=40.30 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=91.6
Q ss_pred ceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCC------------CCC---
Q 015161 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANE------------GYK--- 244 (412)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~------------~~~--- 244 (412)
....++.+.+++ +++...|...+ -+|...-.+.+.++.+.+.++ .+.+.+|... +|.
T Consensus 78 ~~~GGi~s~~~~----~~~l~~Ga~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~ 151 (253)
T PRK02083 78 TVGGGIRSVEDA----RRLLRAGADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPT 151 (253)
T ss_pred EeeCCCCCHHHH----HHHHHcCCCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceec
Confidence 334445565554 34445676554 556444456678888888753 4677888643 232
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.....++++++.+.++. .++=.++. -.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.+
T Consensus 152 ~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 152 GLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 12446677788877764 22222222 246777787764 56899988888899999999997634666544
Q ss_pred c-CCCCcHHHHHHHHHHHHHcCCcE
Q 015161 319 K-LAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 319 k-~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
- .-.-|-....++.+.+++.|+++
T Consensus 227 g~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 227 ASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred hHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 2 22224223456667778888875
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.3 Score=43.52 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..++-+++|++.|-. .+==-++. ++.+.+.+++ +.+.+|+.+|=.+. ..-....++.+ +|-+.+.|..
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd-~~lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFD-YRLAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCC-cHHHHHHHHhc-cCeEEECCCC
Confidence 456667777888887754 44433432 2344555554 47899999997754 33344455544 8999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 323 VG-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 ~G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+| -....++++.|+++|+++-+|.-
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 77899999999999999988543
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.9 Score=42.59 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..++-+++|++.|-. .+==-++. ++.+.+++++ +++.+|+.+|=. ++..-+...++.| +|.+.+.|..
T Consensus 40 Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl~a~~~G-~~~iRINPGN 111 (360)
T PRK00366 40 DVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLALAAAEAG-ADALRINPGN 111 (360)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHHHHHHhC-CCEEEECCCC
Confidence 356667777788887764 44444442 2345555555 467999999965 6666666777765 8999999999
Q ss_pred Cc-HH-HHHHHHHHHHHcCCcEEEccC
Q 015161 323 VG-VL-GALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 ~G-it-~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+| +. ...++++.|+++|+++-+|.-
T Consensus 112 ig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 112 IGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred CCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 98 45 688899999999999988653
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.5 Score=38.59 Aligned_cols=122 Identities=21% Similarity=0.347 Sum_probs=77.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-C-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDAN------EGYKPQ---EAVEVLEK 254 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~-~~~l~vDaN------~~~~~~---~A~~~~~~ 254 (412)
++.+.++ ++.+.+.|... +-+|...-.|.+.+..+++.+ . .+-+.+|+. .+|..+ ...++++.
T Consensus 84 Gi~~~~~----~~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAED----AASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 3445544 34455678774 566744445667788888874 3 355678865 355321 34567777
Q ss_pred HHcCCCCCcee-----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 255 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 255 l~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++.++....+ +......+++.++++++ ...+||.+.=-+.+.+++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777643232 22223346777887764 5689999988999999999987776 555544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=91.63 E-value=3.4 Score=40.85 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCCEEeEecC-C---------ChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~D~~~v~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
.++.++.++++. .+...+-+-++ + +.+.-.+.++++|+... ++.+.+=....++.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 456666665543 34677887775 1 23334466788887532 455665555567777888999999
Q ss_pred HcCCCCCceee--c----------CCCCC-------------CHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHHH
Q 015161 256 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 256 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i 308 (412)
++.++. +|. - |.... .++..++++ +.. ++||.+-=-+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 444 1 11100 123333443 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 876 787765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=13 Score=36.81 Aligned_cols=128 Identities=19% Similarity=0.270 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
.++++-+++++......+..+-+-+|.. ++|.++++++.++.+.+ -|.+|..++++... +++++.+.+.
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~-------- 148 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREA-------- 148 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHh--------
Confidence 3667767777666545555566667642 48899999999863332 47789999987654 4555555442
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec-----------CCCCc---HHHHHHHH
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEII 332 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik-----------~~~~G---it~~l~i~ 332 (412)
-.+++|.+| ++.+.+..+.+++.| +|++.+- .+-+| ++...+++
T Consensus 149 --------------------~P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 149 --------------------WPDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred --------------------CCCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 013456555 457777888888887 5776421 12234 56778899
Q ss_pred HHHHHcCCcEEEccC
Q 015161 333 EVVRASGLNLMIGGM 347 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~ 347 (412)
+.|+.+|++++-.+-
T Consensus 207 ~~a~~~gvpiIADGG 221 (346)
T PRK05096 207 DAAHGLGGQIVSDGG 221 (346)
T ss_pred HHHHHcCCCEEecCC
Confidence 999999999987553
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.6 Score=40.25 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEE--eCCCCCCHHHHH
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVK 305 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~ 305 (412)
.|+.++.+++++.|.+.|+. .||= |...++++.++++++.. .++.++ ..-...+..++.
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL---KQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc---cCCEEEEEecCCccCHHHHH
Confidence 46789999999999999985 8887 55566777777775421 234443 233455678888
Q ss_pred HHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 306 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
++.+.+ +|.+++-... . .....++++.|+++|+.+.+.-
T Consensus 93 ~a~~~g-~~~iri~~~~-s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 93 MAADLG-VDVVRVATHC-TEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHcC-CCEEEEEech-hhHHHHHHHHHHHHHCCCeEEEEE
Confidence 888765 7888774332 3 5678889999999999886644
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=91.23 E-value=4.2 Score=43.04 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=98.0
Q ss_pred eeeceeecCCCHHH-------HHHHHHHHHHcCCCEEeEecC--CCh--------hHHHHHHHHHHHhC-CC-cEEEEeC
Q 015161 179 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNL--------KEDIEVLRAIRAVH-PD-SSFILDA 239 (412)
Q Consensus 179 i~~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~~KiKvG--~~~--------~~D~~~v~avr~~~-~~-~~l~vDa 239 (412)
+|+-...++.+.++ ..+.++++...|...+=+--. .++ ..+.+.++.+.+.+ .+ +-+.+|+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 34444444555433 367788888888865554321 122 12457788888874 45 7788997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHcCCCCCceeecCCCCC------CHHH
Q 015161 240 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHRD------DWEG 276 (412)
Q Consensus 240 N~~----------------------------------~---~~~~A~~~~~~l~~~~l~~~~iEeP~~~~------d~~~ 276 (412)
... | +--+++++++++++++.. ..+=-=+..| |++-
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 643 2 123578899999998864 3333333332 6776
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-cCCCCcHHHHHHHHHHHHHcCCcE
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i-k~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
++++++ ..++||.+-=-+.+++|+.++++...+|.... .+-..+-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 67899988888899999999998654454432 122223222344456667777765
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.17 E-value=7.9 Score=37.69 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=81.8
Q ss_pred eeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG-~--------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++... +++++.+.++...+.|+..|-+-++ + +++.-.+.++++++.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 444455444 8888888888776679999998877 2 1222334466666642 2334443322
Q ss_pred CHHHHHHHHHHHHcCCCCCcee----------------ecCCC-----------------CCCHHHHHHhHHHhhccc--
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVH-----------------RDDWEGLGHVSHIAKDKF-- 288 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~i----------------EeP~~-----------------~~d~~~~~~l~~~~~~~~-- 288 (412)
+.++..++++.+++.++. .| +.|.. +-.++..++++ +..
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 223566788888887653 33 22321 00144445554 355
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.+||.+.=-+.+.+|+.+++..| +|.+|+=-
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~t 282 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCT 282 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEce
Confidence 79999999999999999999877 67887653
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=37.45 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee-------
Q 015161 194 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE------- 266 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE------- 266 (412)
.+.++.+.+.++.-+ +++.-.++++++|+++=.+.+++ ++..+.++++.+.+.++. +|-
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad--~I~ihgrt~~ 167 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGAD--LLVIQGTLVS 167 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCC--EEEEeccchh
Confidence 344444444454432 34445677888888652344555 234667888888888875 333
Q ss_pred cCC--CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 267 QPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 267 eP~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
|=. ...++..+.++.+ ..++||..+. +.+.++.+++++.| +|++.
T Consensus 168 q~~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~ 214 (369)
T TIGR01304 168 AEHVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRTG-AAGVI 214 (369)
T ss_pred hhccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEE
Confidence 100 1235766777664 4689998744 89999999999976 78876
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=24 Score=36.95 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCCh--------hHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~D~~~v~avr~~~~~~~l~vDaN~----~~~--~~~A-~~~~~ 253 (412)
+.+++...+..+.+.||..+.+--|... +.+.++|+++|+..++..|.+=..+ +|. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 5688888888888899999998644211 4689999999999887766533321 343 3444 44777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC---CeEEe-CCCCCCHHHHH----HHHHcCCCCEEEecCCCCc-
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~---ipIa~-dEs~~~~~~~~----~~i~~~a~d~v~ik~~~~G- 324 (412)
...+.++.+.-|=+|+.. .+.+....+..+.... .-|+- .-..++++.+. ++.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gidi~RIfd~lnd--v~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALND--PRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCCh--HHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 778888876678888863 4444443333332212 12222 12356666543 344555 6888887554 6
Q ss_pred H--HHHHHHHHHHHH-c--CCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 V--LGALEIIEVVRA-S--GLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 i--t~~l~i~~~A~~-~--gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++...++ . ++++.+|+....+++ .+-.++|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA--~An~laA 221 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVT--LVSLMKA 221 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH--HHHHHHH
Confidence 3 345566555554 4 689999886544444 3444444
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=11 Score=36.58 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~ 247 (412)
+..++..+.+.++++.+.|-..+-|- .| .+.++-+++|++++++ .+++-| |.|+-.....++
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 44588888889999999998877762 23 1445667788888886 455444 568876667999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
|++.++...+.|-...|+|-|- +.+.++++.+ +.++|+..
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 9999999999887667998765 4566777764 45678744
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.54 E-value=7.6 Score=36.54 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCC------CCCHH---HHHHHHHHHHcCCCCCce
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN~------~~~~~---~A~~~~~~l~~~~l~~~~ 264 (412)
+.++++.+.|..++=+-.- .-+|.++++.+.+.+ ..+-+.+|++. +|... +..++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rViiGt~--av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVIIGTA--AVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEEecc--eecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4566778889887764332 236778888888885 55788899986 67532 456788888887764 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEecCCCCc-H--HHHHHHH
Q 015161 265 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 332 (412)
Q Consensus 265 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~-~a~d~v~ik~~~~G-i--t~~l~i~ 332 (412)
| |=-+.--|++.+++|++ .+.+|+.+-=-+.+..|++.+-+. |...++.=+.-..| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 2 33344457888898885 578999887788999999998887 66666665555555 3 4555443
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.48 E-value=4.4 Score=38.86 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC------------CHHHHHHhHHHhhcccCCeEEe--CCCCCCHHHHH
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDVK 305 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~~ 305 (412)
|..|+.++.+++++.|++.|+. +||=-++.. +.+.++++.+..+ .+.+++. .-...+..++.
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~ 89 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDDIDLLE 89 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCCHHHHH
Confidence 3457889999999999999985 999876532 1455666654211 1344433 33334567777
Q ss_pred HHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015161 306 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+.+.+ +|.+.+-...--+..++++++.|+++|+.+.++-+
T Consensus 90 ~a~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 90 PASGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHhcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 766554 78876654333378899999999999999887643
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=5.7 Score=37.84 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=74.7
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHcCCC
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~-----------~---~~~~A~~~~~~l~~~~l 260 (412)
++++...|+..+ -+|...-++.+.++.+.+.++ .+.+.+|...+ | +.....+++++++++++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 445556687754 455434456677777777643 47788896543 3 12235677788887765
Q ss_pred CCcee------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 261 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 261 ~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
. ..+ ++...-.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4 222 23444457888888864 5789999988899999999999533466654
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=90.35 E-value=6.6 Score=38.08 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=74.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~ 247 (412)
+..++.++.+.++++.+.|-..+-|- .| .+.++=+++|++++++ .+++-| |.|+-.....++
T Consensus 83 GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 162 (285)
T TIGR02317 83 GFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDA 162 (285)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHH
Confidence 44578888888999999998877662 23 1455667889999886 345433 578887778999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
|++.++...+.|-...|+|-|.. .+.++++.+ +.++|+..
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~~ 202 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLLA 202 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEE
Confidence 99999999998876679987654 455667764 45677743
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=90.16 E-value=7.4 Score=36.19 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-C-cEEEEeCCCC------------CC---HHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-D-SSFILDANEG------------YK---PQEA 248 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~-~~l~vDaN~~------------~~---~~~A 248 (412)
++.+.+++ +++.+.|+..+ -+|...-.|.+.++.+.+.++ + +.+.+|.... |+ ..++
T Consensus 82 gi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (232)
T TIGR03572 82 GIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDP 155 (232)
T ss_pred CCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCH
Confidence 34454443 33455687654 455444456677777777643 3 5667886542 32 3456
Q ss_pred HHHHHHHHcCCCCCceeec-----CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 249 VEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++++.+++.++.-..+-. -.+..+++.++++++ ..++||.+.=.+.+.+++.+++....+|.+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 7888888888764111111 122235777777764 56899988888899999999555445676644
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=24 Score=37.91 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeC---C-CCCC--HHHHH-HHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDA---N-EGYK--PQEAV-EVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~~~~~~l~vDa---N-~~~~--~~~A~-~~~~ 253 (412)
..+++...+..+.+.||..+.+--|. --+.+++|++.+|+..|+..+-+=. | =+|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 45677777888888999999977662 1257899999999998877664322 2 2343 44444 4888
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC----eEEe-CCCCCCHHHHHH----HHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAA-DESCRSLDDVKK----IVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~-dEs~~~~~~~~~----~i~~~a~d~v~ik~~~~G 324 (412)
...+.|+.+..+=+++. |.+.+..-.+..++ .+. -|+. .-..++++.+.+ +.+.| +|.+.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-c
Confidence 88888887677777775 33334332222222 232 2222 334677775544 34445 7888887554 6
Q ss_pred -HH--HHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -VL--GALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -it--~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++ .+.+++...+ +.++++.+|+....++ +.+..++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gl--a~an~laA 218 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGL--ASICHYEA 218 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCc--HHHHHHHH
Confidence 33 4555544444 4689999988654444 44444444
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.2 Score=42.83 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC
Q 015161 217 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296 (412)
Q Consensus 217 ~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 296 (412)
++|-++++.+.+++-+ -+.+|..|+.+.-| +++++.+.+. -..+.|.+|
T Consensus 250 e~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~~----------------------------yP~l~ViaG- 298 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKET----------------------------YPDLQIIAG- 298 (503)
T ss_pred cchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHhh----------------------------CCCceeecc-
Confidence 5666777766666544 35677777776554 3444433321 112445444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe-----------cCCCCc---HHHHHHHHHHHHHcCCcEEEccC
Q 015161 297 SCRSLDDVKKIVKGNLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 297 s~~~~~~~~~~i~~~a~d~v~i-----------k~~~~G---it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++.+.++.+.+|++| +|++.+ +++-|| .|...+++++|+++|++++-.+-
T Consensus 299 NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG 362 (503)
T KOG2550|consen 299 NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG 362 (503)
T ss_pred ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC
Confidence 456777888999887 677653 555566 56778999999999999987554
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=12 Score=37.07 Aligned_cols=117 Identities=15% Similarity=0.295 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCC--CEEeEecC-CChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCc---
Q 015161 191 AEAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV--- 263 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf--~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~--- 263 (412)
.+..+++.++++.|. ..+-+.+- .+.+.-.+.++.+|+.+|+..+++ |.. |.++|.... +.|+...
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~----~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELE----NAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHH----HcCcCEEEEC
Confidence 344677888889866 88888765 344556677999999999988887 655 777765443 3444311
Q ss_pred ------eeecCC---CCCCH--HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 264 ------LFEQPV---HRDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 264 ------~iEeP~---~~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+|++. ...|| ..++++.+ ...+||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 236443 23333 34556553 3579999999999999999999997 5777654
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=90.03 E-value=4.8 Score=39.92 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
..|+.++.+++++.|.+.|+. +||= +....+++.++++.+..+ +..+-+...=...+.++++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 456889999999999999985 9998 444567777777765422 22222223223457889988
Q ss_pred HHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 307 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 307 ~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
+.+.+ +|.+++-.. +- ...+.+.+++|++.|..+...-
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 88876 788876432 33 5567899999999999886543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=90.03 E-value=14 Score=34.68 Aligned_cols=170 Identities=24% Similarity=0.281 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCCh------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 262 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~------~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~ 262 (412)
+.++..+.+..+.+.|+..+-+-.+... +.+.+.++.+++.+++..+.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6677788888888889988887766544 67788899999987777776555443 3445555566653
Q ss_pred ceeecCCCCC--------------CHHHHHHhHHHhhcccCCeEEeCC-CC----CCHHHH----HHHHHcCCCCEEEec
Q 015161 263 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SC----RSLDDV----KKIVKGNLADVINIK 319 (412)
Q Consensus 263 ~~iEeP~~~~--------------d~~~~~~l~~~~~~~~~ipIa~dE-s~----~~~~~~----~~~i~~~a~d~v~ik 319 (412)
++-=+++.. +++...+..+.++ +.++.+...= .. .++..+ +.+.+.+ +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333333 2333323222222 3466665542 33 333333 3344445 7777776
Q ss_pred CCCCc-HH--HHHHHHHHHHH-cC-CcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 320 LAKVG-VL--GALEIIEVVRA-SG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 320 ~~~~G-it--~~l~i~~~A~~-~g-i~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
-+ .| .+ +..+++...++ .+ +++.+|+... .|++.+-.++|....+.++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~--~gla~an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNT--LGLAVANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCC--CChHHHHHHHHHHcCCCEEE
Confidence 54 36 33 45555555444 44 7777777533 33444444444333345554
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=89.98 E-value=8.4 Score=35.73 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=76.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-CcEEEEeCC------CCCC---HHHHHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-DSSFILDAN------EGYK---PQEAVEVLEKL 255 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~~~l~vDaN------~~~~---~~~A~~~~~~l 255 (412)
++.+.++ ++++.+.|... +=+|...-.+.+.++.+.+.++ .+.+.+|.. .+|. .....++++.+
T Consensus 82 GI~~~ed----~~~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~ 155 (233)
T PRK00748 82 GIRSLET----VEALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRF 155 (233)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHH
Confidence 4445544 44555667654 4566544455556666666543 477788864 2441 22335567777
Q ss_pred HcCCCC-Ccee----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVT-PVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~-~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.+.. +... ++...--|++.++++++ .+++||.+.=-+.+.+|++++.+.+.+|.+.+
T Consensus 156 ~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 156 EDAGVKAIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 776543 1111 12222346787888864 56799999888999999999999886787754
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.1 Score=36.22 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=81.4
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCC-----------CCC---
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDAN-----------EGY--- 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN-----------~~~--- 243 (412)
|+....++.+.+++ +++.+.|...+ -+|...-.+.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 73 pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~ 146 (243)
T cd04731 73 PLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP 146 (243)
T ss_pred CEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee
Confidence 33444455666554 34445676654 456444455666766666543 478889865 234
Q ss_pred CHHHHHHHHHHHHcCCCCCceeec-------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQ-------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEe-------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
+..+..++++.+++.++. ++.= .....+++.++++.+ ..++||.+.=-+.+++++.++++...+|.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d--~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 147 TGLDAVEWAKEVEELGAG--EILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred cCCCHHHHHHHHHHCCCC--EEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 245567888888887764 2221 122345777777764 568999998889999999999987557776
Q ss_pred Ee
Q 015161 317 NI 318 (412)
Q Consensus 317 ~i 318 (412)
.+
T Consensus 221 ~v 222 (243)
T cd04731 221 LA 222 (243)
T ss_pred EE
Confidence 65
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=16 Score=37.93 Aligned_cols=167 Identities=20% Similarity=0.269 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEE---EeCC-CCCCH--HH-HHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI---LDAN-EGYKP--QE-AVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~---vDaN-~~~~~--~~-A~~~~~ 253 (412)
+.+++...+..+.+.||..+.+--|.. -+.++++++++|+..|+..|. .=.| =+|.. ++ ...|++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 467888888888888999999865521 247899999999987765543 2223 24543 44 345788
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EEe-CCCCCCHHH----HHHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDD----VKKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~----~~~~i~~~a~d~v~ik~~~~G 324 (412)
...+.|+.+..+=+.+. |.+.+....+..++ .+.- |+. +...++.+- ++++.+.| +|.+.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G-ad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG-ADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 88888887677777775 45555554433332 2322 222 233444432 34455555 7888887654 6
Q ss_pred -HH--HHHHHHHHHHH-cCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -VL--GALEIIEVVRA-SGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -it--~~l~i~~~A~~-~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++ .+.+++...++ .++++.+|+....+ ++.+..++|
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G--lA~An~laA 227 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSG--ISQMTYLAA 227 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCc--cHHHHHHHH
Confidence 33 45555554444 46888888864444 444445544
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.73 E-value=8.9 Score=38.60 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec-------CC-CCC-CHHHHHHhHHHhhc
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV-HRD-DWEGLGHVSHIAKD 286 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~-~~~-d~~~~~~l~~~~~~ 286 (412)
++.-.++++++++.+ +.+.+-. ++.++.++++.+.+.++. +|.= -- ... ++..+.++.+
T Consensus 117 p~l~~~iv~~~~~~~--V~v~vr~----~~~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik---- 184 (368)
T PRK08649 117 PELITERIAEIRDAG--VIVAVSL----SPQRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY---- 184 (368)
T ss_pred HHHHHHHHHHHHhCe--EEEEEec----CCcCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----
Confidence 334455666666642 3332222 234456666667666654 3331 11 111 4666666553
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC---------CC--cHHH---HHHHHHHHHHc-------CCcEEEc
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---------KV--GVLG---ALEIIEVVRAS-------GLNLMIG 345 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~---------~~--Git~---~l~i~~~A~~~-------gi~~~~~ 345 (412)
+.++||..+. +.+.++.+++++.| +|++.+-.. .. |+.. ..++.+.++++ +++++..
T Consensus 185 ~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd 262 (368)
T PRK08649 185 ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD 262 (368)
T ss_pred HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence 3579998854 89999999999876 788855411 11 2211 22333333333 6898887
Q ss_pred cCcchHHHHHHHHHH
Q 015161 346 GMVETRLAMGFAGHL 360 (412)
Q Consensus 346 ~~~es~i~~~a~~hl 360 (412)
+-+.++-..+.++.+
T Consensus 263 GGI~~~~diakAlal 277 (368)
T PRK08649 263 GGIGTSGDIAKAIAC 277 (368)
T ss_pred CCCCCHHHHHHHHHc
Confidence 766555444444433
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.65 E-value=8.3 Score=37.33 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=84.2
Q ss_pred HHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc
Q 015161 157 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS 233 (412)
Q Consensus 157 ~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~ 233 (412)
....++..++|+.-.|.... + .+.+.++.+.||+.+-+.-. .++++.++..+.+.+. . -++
T Consensus 66 ~~~~A~~~~vPV~lHLDH~~------------~----~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv 129 (283)
T PRK07998 66 VKRHADKMDVPVSLHLDHGK------------T----FEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGV 129 (283)
T ss_pred HHHHHHHCCCCEEEECcCCC------------C----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34456676777654443211 2 23445567889999999765 3566777776666652 1 121
Q ss_pred ----EEE-E----eC----CCCC-CHHHHHHHHHHHHc----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccC
Q 015161 234 ----SFI-L----DA----NEGY-KPQEAVEVLEKLYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289 (412)
Q Consensus 234 ----~l~-v----Da----N~~~-~~~~A~~~~~~l~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 289 (412)
.|- + |. ...| ++++|.+|+++..- .|+ |-. |.-|++-++++++ .++
T Consensus 130 ~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~---Y~~---p~l~~~~l~~I~~----~~~ 199 (283)
T PRK07998 130 PVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL---EDI---PRIDIPLLKRIAE----VSP 199 (283)
T ss_pred EEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC---CCC---CCcCHHHHHHHHh----hCC
Confidence 111 1 11 1224 59999999987632 232 322 5668888998875 578
Q ss_pred CeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 290 VSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 290 ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 200 vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 229 (283)
T PRK07998 200 VPLVIHGGSGIPPEILRSFVNYKVA-KVNIA 229 (283)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCc-EEEEC
Confidence 99876 5677777899999998854 44554
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=89.63 E-value=14 Score=32.73 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=84.1
Q ss_pred eeeceeecCCC----HHHHHHHHHHHHHcCCCEEeEecCC----C--hhHHHHHHHHHHHhC-CCcEEEEeCCCCC--CH
Q 015161 179 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVGK----N--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 245 (412)
Q Consensus 179 i~~~~~i~~~~----~~~~~~~~~~~~~~Gf~~~KiKvG~----~--~~~D~~~v~avr~~~-~~~~l~vDaN~~~--~~ 245 (412)
+|+...++..+ .++..+.++++.+.|...+.+-... + .+.-.+.++++++.. .+..+++..+-.+ ++
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 44444444444 6788889999999999999986431 1 334456677887763 5688888776433 57
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
++..+..+.+++.++. +|-..... .+++.++++.+... .++||..--...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAVG--GRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhcc--cCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7767777777777764 77765542 26777777764221 1456644333346778888888764
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.58 E-value=13 Score=36.86 Aligned_cols=150 Identities=24% Similarity=0.266 Sum_probs=100.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 240 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~-~~~l~vDaN 240 (412)
|.-..++..+|+.+.+.++-....+ ..|-+.+|. +++---+.|+++++.. | .++|++
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI--- 150 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI--- 150 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe---
Confidence 4455677789998877776665666 788888772 2333345677777752 3 345554
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcee-------ec--C-CCCCCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLF-------EQ--P-VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~i-------Ee--P-~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 309 (412)
.=+.++.+++++.+++.|.. |+ || + .++-||+.++.+++ ... +||.+.-++.++.|..++++
T Consensus 151 -~~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 151 -FVDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred -cCcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHH
Confidence 24567888999999998864 44 22 2 45668998998875 445 99999999999999999998
Q ss_pred cCCCCEEEec--------CC---CCcH--HH-HHHHHHHHHHcCC
Q 015161 310 GNLADVINIK--------LA---KVGV--LG-ALEIIEVVRASGL 340 (412)
Q Consensus 310 ~~a~d~v~ik--------~~---~~Gi--t~-~l~i~~~A~~~gi 340 (412)
.-.+|+|..- +. ..|. .+ ..+-..+|.+++-
T Consensus 224 ~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5456776421 11 1121 22 3456788888873
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=89.50 E-value=17 Score=33.42 Aligned_cols=141 Identities=14% Similarity=0.222 Sum_probs=93.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+-|++.+.+..-. ....+.++.+++.+++ .+.+=+..-.+.+++... .+.|.. |
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--E
Confidence 344578889999999999999999998643 2455678888887653 366777777888876433 335543 6
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC-CCcHHHHHHHHHHHHHc--CCc
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA-KVGVLGALEIIEVVRAS--GLN 341 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~-~~Git~~l~i~~~A~~~--gi~ 341 (412)
+=-|... .+ ..+.+. ..++++..+ +.++.++.+..+.| +|++.+=+. .+|+.... .+..-. +++
T Consensus 87 ivsp~~~--~~-v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ip 153 (206)
T PRK09140 87 IVTPNTD--PE-VIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVP 153 (206)
T ss_pred EECCCCC--HH-HHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCe
Confidence 6656543 32 223221 457888887 89999999999887 699876332 24533333 333333 588
Q ss_pred EEEccC
Q 015161 342 LMIGGM 347 (412)
Q Consensus 342 ~~~~~~ 347 (412)
++.-+-
T Consensus 154 vvaiGG 159 (206)
T PRK09140 154 VFAVGG 159 (206)
T ss_pred EEEECC
Confidence 887553
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.48 E-value=16 Score=34.96 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=83.5
Q ss_pred eceeecCCCHHHHHHHHHHHHHcCCCEEeEecC----------------------CChhHHHHHHHHHHHhCCC--cEEE
Q 015161 181 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SSFI 236 (412)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~D~~~v~avr~~~~~--~~l~ 236 (412)
.|.+.+.-+++...+.++.+.+.|-..+.+-+- ..+++-.+.++.+|+.+.+ +-||
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm 100 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLM 100 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356666667777788888788888888887653 1245566778888876655 4455
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HH---------------
Q 015161 237 LDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EG--------------- 276 (412)
Q Consensus 237 vDaN~~~------------------------~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~--------------- 276 (412)
.=.|--| -++++-++.+.++++++.+.++=-|..+++. +.
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~ 180 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRM 180 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecc
Confidence 5555422 3567777888888888877777777765432 11
Q ss_pred ------------HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 277 ------------LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 277 ------------~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
..++-+.+|..+++||+.|--+.++++++++.+. +|++.
T Consensus 181 GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVI 231 (265)
T COG0159 181 GVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVI 231 (265)
T ss_pred cccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEE
Confidence 1222222333455666666666666666666653 45543
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=19 Score=33.31 Aligned_cols=143 Identities=13% Similarity=0.215 Sum_probs=99.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
+...++++..+.++.+.+-|++.+.+-+-. ..-.+.++++++.+++. .+.+=+..-.|.+++.+. .+.|..
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--
Confidence 344578889999999999999999998852 34567888888876542 588888999999987544 346653
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHc-CCc
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLN 341 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~-gi~ 341 (412)
|+=-|.-..+. .+.++ +.++|+.-| +.|+.++.++.+.| +|++.+=+.. .|+.... .+..-+ +++
T Consensus 91 FivsP~~~~~v---~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik---~l~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFNRET---AKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIK---AIKGPLPQVN 157 (213)
T ss_pred EEECCCCCHHH---HHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHH---HHhhhCCCCE
Confidence 77777654443 33332 468898886 56899999999877 6999885533 3533322 233334 488
Q ss_pred EEEccCc
Q 015161 342 LMIGGMV 348 (412)
Q Consensus 342 ~~~~~~~ 348 (412)
+++.+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8875543
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=16 Score=35.05 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=58.0
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------------ChhHHHHHHHHHHHhC-CCcEEE
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------------NLKEDIEVLRAIRAVH-PDSSFI 236 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------------~~~~D~~~v~avr~~~-~~~~l~ 236 (412)
-.|.+.+.-+.+...+.+..+.+.|-..+.+-+-. ++++-.+.++++|+.. -.+-+|
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm 97 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF 97 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 34666666677777777777778888888776531 2334455666666431 113366
Q ss_pred EeCCCC------------------------CCHHHHHHHHHHHHcCCCCCceeecCCCC
Q 015161 237 LDANEG------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271 (412)
Q Consensus 237 vDaN~~------------------------~~~~~A~~~~~~l~~~~l~~~~iEeP~~~ 271 (412)
.=.|-- ...+++-++.+.+.++++.+.++=-|..+
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 666631 24567778888888888876676666654
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=8.8 Score=36.12 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC--HHHHHHHHHHHHcCCCCCcee
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN------~~~~--~~~A~~~~~~l~~~~l~~~~i 265 (412)
+.++++...|.. |+-+|...-.|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+++.++. .++
T Consensus 88 edv~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~-~ii 164 (241)
T PRK14024 88 ESLEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS-RYV 164 (241)
T ss_pred HHHHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC-EEE
Confidence 445566777887 4455644445667777766654 3455667763 2564 23567788888888764 122
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 015161 266 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 318 (412)
Q Consensus 266 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~i 318 (412)
++-....|++.++++.+ ...+||.+.=-+.+.+|+.++.+. ..+|.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 44444457888888874 568999998889999999988642 24666554
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=18 Score=38.04 Aligned_cols=109 Identities=17% Similarity=0.329 Sum_probs=71.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC----CCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHH
Q 015161 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH----RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 234 ~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~----~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 308 (412)
+|+|-+--+-++++ ++.++.|-+.++. .||=-.. ...++..+++++ .. +++|.++ ++.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554443444554 7888888888874 7773332 122345666653 33 6899998 889999999999
Q ss_pred HcCCCCEEEecCC-----------CCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 309 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 309 ~~~a~d~v~ik~~-----------~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+.| +|++.+-.. -+| ++...++.+.|+++|++++..+-..++
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~ 356 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS 356 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH
Confidence 988 688865321 134 344567888999999999994433333
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=88.58 E-value=7.1 Score=36.20 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCC------CC---CHHHHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANE------GY---KPQEAVEVLEK 254 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~------~~---~~~~A~~~~~~ 254 (412)
++.++++ ++++.+.|... +=+|...-.|.+.++.+.+.++ .+.+.+|... +| +..+..++++.
T Consensus 81 gI~~~e~----~~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd04732 81 GIRSLED----IERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKR 154 (234)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHH
Confidence 4455544 45556678554 4567555567777888877743 4666777542 23 13345667777
Q ss_pred HHcCCCCCceeecCC------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 255 LYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 255 l~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++.+.. .++=-.+ ...|++.++++++ .+++||...--+.+.+++.++++.| +|.+.+
T Consensus 155 ~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 155 FEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 8777653 2222223 3346777888764 5689999999999999999999875 566544
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=88.43 E-value=18 Score=35.74 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=83.7
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~-~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
+|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++++.. ++.+.+=-+..+ .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 455566666778888888888888899999987651 11 11235567777753 355665544434 34
Q ss_pred HHHHHHHHHcCCCCCceeec--CCC--CCCH------------------HHHHHhHHHhhcccCCeEEeCCCCCCHHHHH
Q 015161 248 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDW------------------EGLGHVSHIAKDKFGVSVAADESCRSLDDVK 305 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEe--P~~--~~d~------------------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 305 (412)
...+++.+++.++. .|-- -+. .-|+ ..++.+.+ +++..++||.+.=-+.+.+|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 55677788877653 3311 000 0111 11222222 2345689999988899999999
Q ss_pred HHHHcCCCCEEEec
Q 015161 306 KIVKGNLADVINIK 319 (412)
Q Consensus 306 ~~i~~~a~d~v~ik 319 (412)
+++..| +|.+|+=
T Consensus 256 e~l~aG-A~~V~v~ 268 (334)
T PRK07565 256 KMLLAG-ADVVMIA 268 (334)
T ss_pred HHHHcC-CCceeee
Confidence 999877 7888775
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=88.02 E-value=16 Score=33.75 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=82.8
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCC
Q 015161 221 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298 (412)
Q Consensus 221 ~~v~avr~~~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 298 (412)
+.++.+++.. ..+.+-++ +.+.++.++-++.|.+. +. .+||=|+..+-++..++|.+ .++++... .+
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~--~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T-~V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGN--VVVKIPVTEDGLKAIKKLSE-----EGIKTNVT-AI 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCC--EEEEEcCcHhHHHHHHHHHH-----cCCceeeE-Ee
Confidence 4566666653 34555565 46788888888887765 42 59999988755555555542 37888766 47
Q ss_pred CCHHHHHHHHHcCCCCEEEecCCCC------cHHHHHHHHHHHHHcCCc---EEEccC
Q 015161 299 RSLDDVKKIVKGNLADVINIKLAKV------GVLGALEIIEVVRASGLN---LMIGGM 347 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~v~ik~~~~------Git~~l~i~~~A~~~gi~---~~~~~~ 347 (412)
++..+...+++.| ++++.|=+.++ |+.-..++.++++.+|++ ++.|.+
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 8999999999988 58899888883 355677899999999988 666655
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=87.82 E-value=4.8 Score=40.09 Aligned_cols=122 Identities=10% Similarity=0.094 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC-C---------ChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~D~~~v~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+.++..+.+++.. .+...+-+-++ + +.+.-.+.+++||++.. ++.+.+=-.-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4577777777753 36788888775 1 23344567888888643 46777766666888888899999
Q ss_pred HHcCCCCCceee------------cCC--------C-----CCCHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHH
Q 015161 255 LYEMGVTPVLFE------------QPV--------H-----RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 255 l~~~~l~~~~iE------------eP~--------~-----~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~ 307 (412)
+++.++. .|. .+. + +-.++..++++ ++. ++||.+-=-+.+.+|+.++
T Consensus 234 l~~~Gad--gi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~ 307 (344)
T PRK05286 234 ALEHGID--GVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEK 307 (344)
T ss_pred HHHhCCc--EEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHH
Confidence 9887653 221 110 0 00122333333 344 6899888889999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
+..| +|.+|+
T Consensus 308 l~aG-Ad~V~v 317 (344)
T PRK05286 308 IRAG-ASLVQI 317 (344)
T ss_pred HHcC-CCHHHH
Confidence 9876 677755
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=21 Score=32.94 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEeEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-----
Q 015161 195 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--~~--~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i----- 265 (412)
++++++.+.|-..+=+-... .+ +...+.++.+++. +++.++++.+ +.+++. .+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCC--EEEcCCc
Confidence 44566778898866654431 12 4455677788776 7888888775 566653 34455542 33
Q ss_pred --ecC---CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 --EeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.. ....+++.++++++ ..++||...--+.+.+++.++++.| +|++.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 111 12334566666654 4589999988999999999999988 788755
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=87.80 E-value=17 Score=35.33 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=70.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~~--~~~~l--~vDaN~~~~~~~ 247 (412)
+..++.++.+.++++.+.|...+-|- .| .+.++-+++|++++++- +++-| |.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 34455557778889999998887762 22 13455577888888863 45443 679987778999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
|++.++...+.|-...|+|-|.. .+.++++.+ ..+.|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999998876679987644 455677765 345565
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=87.31 E-value=6.5 Score=37.94 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCC---CHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ 317 (412)
.++.+.+..+++..++.+- |..|+=--... .++.+....+.+.++.++||++.- ...+.+.+.++++.| ++-+.
T Consensus 20 ~~n~e~~~avi~AAe~~~s-PvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVM 97 (276)
T cd00947 20 INNLETLKAILEAAEETRS-PVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAG-FSSVM 97 (276)
T ss_pred eCCHHHHHHHHHHHHHhCC-CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEE
Confidence 3455555555555555542 33443221111 122233333333346789999864 566899999999998 89999
Q ss_pred ecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 318 IKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 318 ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
+|.+..= +..++++.++|+++|+.+-
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9988863 6679999999999999873
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.31 E-value=7.4 Score=37.74 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=48.1
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999874 566899999999987 789999988864 6679999999999999873
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.24 E-value=6.1 Score=37.80 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--CC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 315 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a---~d~ 315 (412)
.|+.++.+++++.|.+.|+. .||= |. +++|++..+.+.+. ..++.+.+= .-.+..++.++.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCCE
Confidence 56889999999999999985 8997 54 45677777777542 234555421 1134677888777653 677
Q ss_pred EEecCC----------CCc----HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 316 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 316 v~ik~~----------~~G----it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+.+=.. ..+ +....++++.|+++|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766321 111 34466789999999999998877543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.24 E-value=30 Score=33.58 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=84.2
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHc---CCCEEeEecC-C----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVG-K----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 244 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~---Gf~~~KiKvG-~----------~~~~D~~~v~avr~~~~~~~l~vDaN~~~~ 244 (412)
.|+..++... +++..+.+++..+. |...|-+-++ + +++.-.+.++++++.. ++.+.+--.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 3555666555 78887777776664 6889998887 1 2344445567777653 2445555444567
Q ss_pred HHHHHHHHHHHHcC--CCCC------------cee--ecCCC--CC----------CHHHHHHhHHHhhccc--CCeEEe
Q 015161 245 PQEAVEVLEKLYEM--GVTP------------VLF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 294 (412)
Q Consensus 245 ~~~A~~~~~~l~~~--~l~~------------~~i--EeP~~--~~----------d~~~~~~l~~~~~~~~--~ipIa~ 294 (412)
.++..++++.+.+. ++.- .-+ +.|.- .. .+..++.+++ ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66666777777766 2210 011 22211 11 2233433332 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-=-+.+.+|+.+++..| +|.+|+=-.
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta 274 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTA 274 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchh
Confidence 88899999999999976 688887544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=87.10 E-value=7.2 Score=37.75 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.7
Q ss_pred cccC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~-ipIa~d-Es~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.+ +||+.. ....+++.++++++.| ++.+++|..... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3567 999987 4566788899999887 799999998876 4458899999999998765
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.7 Score=37.12 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeec---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++++..++...+.+++.+.|+|. ...+-+.+-.+++++ .+++|+..|--+.+.++++++++.+ +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 5789999999999988988789998 333345566666654 5689999999999999999998877 687754
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=87.00 E-value=8.9 Score=38.10 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEE--eCCCCCCHHH
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDD 303 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~ 303 (412)
+..|+.++.+++++.|.+.|+. .||= +....+++.++.+++. ..+..++ ..=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 3456889999999999999985 8987 1223456667776542 2234544 3333457889
Q ss_pred HHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 304 VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 304 ~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++++.+.+ +|.+.+-. .+. ...+.+.+++|+++|+.+...-+
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99888876 78877643 334 56688999999999999876443
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=86.79 E-value=25 Score=32.28 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=99.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+.. +.|-. |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~----~aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAV----DAGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHH----HcCCC--E
Confidence 344578899999999999999999998853 4556778888888875 777788889999875543 46653 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+ ..+.++ +.++|..-| +.|+.++..+++.| +|++.+=|.- .| ..-...+..-- -++++
T Consensus 84 ivsP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGLTPE---LAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCCCHH---HHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 866654322 333332 468888884 78999999999988 5888777765 44 33222222222 37888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 887654
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=7.4 Score=37.64 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=46.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+.+.+.++++.| ++.+|+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35689998853 567888899999987 799999988864 5568899999999999874
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=42 Score=34.76 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEE--Ee-CC-CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI--LD-AN-EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~--vD-aN-~~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+.+--|.. -+.+.++++.+++..++..+. += .| -+|. ++++ .++++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 567778888888889999999853311 134788999999987777764 22 22 3553 3444 44677
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EE-eCCCCCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++...-+-.++. |.+.+.+..+..+ +.+.- |+ .+...++++.+ +++.+.| +|.+.++=+- |
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~-G 178 (448)
T PRK12331 104 KSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMA-G 178 (448)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-C
Confidence 77777776445555554 3334444333333 23432 22 23344555443 3455555 6888777543 5
Q ss_pred -H--HHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++...+ +.++++.+|+....++ +.+-.++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~Gl--A~AN~laA 218 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGI--AEMTYLKA 218 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCc--HHHHHHHH
Confidence 3 34555554443 4688998888644444 44444444
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=86.66 E-value=23 Score=34.29 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeE------e-c---C-------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKL------K-V---G-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 245 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~Ki------K-v---G-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN-~~~~~ 245 (412)
.++..+.+.++++.+.|...+-+ | . | .+.++-.++|++++++ .+++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 57888889999999999988887 1 1 1 1345566788888875 456544 56764 35578
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
++|++.++...+.|-...|+|-+ ..+.+.++++.+.++... ++|+..-..-+....+.++-+.|
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~--~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG 233 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSR--KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAG 233 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC--CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcC
Confidence 99999999999988766788842 234555666665332111 35765433212222344445555
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=86.43 E-value=25 Score=34.68 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=92.0
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-C--h--------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N--L--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~--~--------~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
.|+..++...++++..+.++.+.+.|+..+-+.++. . . +.-.+.++++|+.. ++.+.+=-...+ ++
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~--~~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFF--SA 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCc--cC
Confidence 345556656678888888888878899999998862 1 1 11245677787753 344555443333 24
Q ss_pred HHHHHHHHHcCCCCCc-----eeecCCCCC------C---------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 248 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
...+++.+++.++.-. +..-....+ . ...++.+.+ +++..++||.+.=-+.+.+|+.+.
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777766553210 111001000 0 011222221 234568999998899999999999
Q ss_pred HHcCCCCEEEecCCCC--c---HHH-HHHHHHHHHHcCCc
Q 015161 308 VKGNLADVINIKLAKV--G---VLG-ALEIIEVVRASGLN 341 (412)
Q Consensus 308 i~~~a~d~v~ik~~~~--G---it~-~l~i~~~A~~~gi~ 341 (412)
+..| +|.+|+=-.-. | +.. ..++.++.+++|+.
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9876 68888753321 3 222 23456677777764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=27 Score=32.08 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=99.4
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+.. +.|.. |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai----~aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAA----KAGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHH----HcCCC--E
Confidence 334578889999999999999999998852 3456778888887875 777788889999875443 46654 8
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+. -+.++ +.++|..-| +.|+.++..+++.| ++++.+=|.- +| ..-...+..-- -++++
T Consensus 80 ivSP~~~~~v---i~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l 147 (201)
T PRK06015 80 IVSPGTTQEL---LAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFF 147 (201)
T ss_pred EECCCCCHHH---HHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcE
Confidence 8778654333 33332 468898876 67999999999988 5888777753 44 33222222222 37888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 148 ~ptGGV 153 (201)
T PRK06015 148 CPTGGI 153 (201)
T ss_pred EecCCC
Confidence 887654
|
|
| >cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
|---|
Probab=86.35 E-value=31 Score=32.79 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHhC--CCcEEEEeCC------CCCCHHHHHHHHH-HHHcC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVH--PDSSFILDAN------EGYKPQEAVEVLE-KLYEM 258 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~~--~~~~l~vDaN------~~~~~~~A~~~~~-~l~~~ 258 (412)
+.++..+.++.+.+.|++.|-.--........+.+ +++++.. .++.|.-=.. ..++.+...+-++ .|+++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45677888888999999998644321111123333 4444432 2333332211 1256665544332 35544
Q ss_pred C---CCCceeecCCCCCC-----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEecCCCCcHHHH
Q 015161 259 G---VTPVLFEQPVHRDD-----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGA 328 (412)
Q Consensus 259 ~---l~~~~iEeP~~~~d-----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~ik~~~~Git~~ 328 (412)
+ +.++++-.|-.... ++.+.++.+ .+.==+.|=|.++...+.++++. ..++++|+..+-+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 3 22345556644322 344444432 24333456677888888888887 789999988765431111
Q ss_pred HHHHHHHHHcCCcEEEccCcc
Q 015161 329 LEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 329 l~i~~~A~~~gi~~~~~~~~e 349 (412)
..+..+|+++|+.++..+.+.
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~ 202 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLA 202 (285)
T ss_pred HHHHHHHHHcCcEEEEecccc
Confidence 268899999999998876654
|
AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=52 Score=35.40 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC--CC------hhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG--KN------LKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG--~~------~~~D~~~v~avr~~~~~~~l~vDaN----~~~~--~~~A-~~~~~ 253 (412)
+.++....+..+.+.||..+-+--| .+ -+.+.++++.+|+..|+..|.+=.. -+|. ++++ ..+++
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 5678888888888899999998533 11 2478999999999988877643234 2455 4555 44777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EEe-CCCCCCHHHHH----HHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~~~----~~i~~~a~d~v~ik~~~~G 324 (412)
...+.++....|-+++.. .+.+....+..++ .+.- |+. +...++.+.+. .+.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gid~~rifd~lnd--~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~-G 179 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMND--PRNLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-VDSLCIKDMA-G 179 (593)
T ss_pred HHHhcCCCEEEEeeeCCc--HHHHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 777888765677777653 4444443332232 3432 332 33345554433 334445 7888887654 5
Q ss_pred -H--HHHHHHHHHH-HHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++... ++.++++.+|+...+++ +.+..++|
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl--A~An~laA 219 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDVPLHLHCHATTGL--STATLLKA 219 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCCeEEEEECCCCch--HHHHHHHH
Confidence 3 3455554444 44688998888655444 44444444
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=11 Score=36.70 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcE
Q 015161 277 LGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~ 342 (412)
+..+.....++.++||+..- ...+.+.+.++++.| ++.+++|-+..- +..++++.++|+.+|+.+
T Consensus 62 ~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 62 LVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 33333333346789998864 566788899999987 799999987753 556889999999999987
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=86.06 E-value=18 Score=33.52 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-C-CCcEEEEeCC------CCCCH---HHHHHHHHHHHcCCCCCce
Q 015161 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-H-PDSSFILDAN------EGYKP---QEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~-~~~~l~vDaN------~~~~~---~~A~~~~~~l~~~~l~~~~ 264 (412)
.++++.+.|...+ =+|...-.|.+.+..+.+. + ..+-+.+|.. .+|.. ....++++.+++.++. .+
T Consensus 86 d~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~-~i 162 (230)
T TIGR00007 86 DVEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE-GI 162 (230)
T ss_pred HHHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC-EE
Confidence 3455666788754 3554344566667776665 4 3466777855 23432 2335677777777653 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 265 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 265 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ +......|++-++++++ ..++||.+.=-+.+.+|++++.+.| +|.+.+
T Consensus 163 i~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 163 IYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred EEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 3 22222345777777764 5789999988999999999988765 666654
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=86.03 E-value=32 Score=32.69 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC----------------------------HHHHHHhHHHhhcccCCeEEeC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----------------------------WEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----------------------------~~~~~~l~~~~~~~~~ipIa~d 295 (412)
..+|.-++.+.++++++.+.++=-|..+++ .+.+.+..+.+|+.+++||+.|
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 457777777778877776555555554321 1112221122233456666666
Q ss_pred CCCCCHHHHHHHHHcCCCCEE
Q 015161 296 ESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 296 Es~~~~~~~~~~i~~~a~d~v 316 (412)
--+.+.++++++.+.| +|++
T Consensus 196 FGI~~~e~v~~~~~~G-ADGv 215 (250)
T PLN02591 196 FGISKPEHAKQIAGWG-ADGV 215 (250)
T ss_pred CCCCCHHHHHHHHhcC-CCEE
Confidence 6666666666655543 4554
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=85.68 E-value=13 Score=36.05 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999864 567899999999997 799999988864 5668999999999999873
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.67 E-value=12 Score=36.20 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=48.0
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+++.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999864 566899999999998 799999998864 6678999999999998773
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=23 Score=33.22 Aligned_cols=114 Identities=16% Similarity=0.259 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-CcEEEEeCCC------CCCH---HHHHHHHHHHHcCCCCCce
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-DSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~~~l~vDaN~------~~~~---~~A~~~~~~l~~~~l~~~~ 264 (412)
+.++++.+.|...+ =+|...-+|.+.++.+.+.++ .+-+.+|+.. +|.. -+..++++.++++++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 44566777787654 456444567888888888864 5778899743 3532 2345677777777653 22
Q ss_pred eecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 265 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 265 iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
|=--+.. .|++-+.++.+ .+++||...=-+.+.+|+.++.+.| ++.+
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~v 218 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAA 218 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEE
Confidence 2222332 25766777764 5689998888899999999999876 4544
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.17 E-value=8.5 Score=37.29 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=48.0
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46689999874 566789999999997 788999998864 6678999999999999873
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=84.73 E-value=28 Score=35.36 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeC----C-
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA----N- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDa----N- 240 (412)
..+.|+++++.||..+.|+.+. ++ +--++.|++||++ +++ +.+++-. +
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 3566778888999999999751 12 1235678999997 666 3344432 1
Q ss_pred --CCCCHHHHHHHHHHHHcC------CCCCceeecCCC-----------CCCHHH-HHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWEG-LGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~------~l~~~~iEeP~~-----------~~d~~~-~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
..-+.++.+.+.+.|+.. ++ .+|+==.. .....+ ...+.+.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777652 23 24431110 000000 1122223344677888776666 5
Q ss_pred HHHHHHHHHcCCCCEEE
Q 015161 301 LDDVKKIVKGNLADVIN 317 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~ 317 (412)
.+...++++.+.+|.|-
T Consensus 324 ~~~a~~~l~~g~aDlV~ 340 (391)
T PLN02411 324 RELGMQAVQQGDADLVS 340 (391)
T ss_pred HHHHHHHHHcCCCCEEE
Confidence 68888999999999874
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.71 E-value=21 Score=33.95 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
..|+.++.+++++.|.+.|+. .||=-+| ..+++.++++.+ ...+..+..- .-.+.+++.++.+.+ ++.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999985 9998544 234456666653 2234444432 224678888888765 67776
Q ss_pred ecCCCC--------c------HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 318 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 318 ik~~~~--------G------it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+=.... | +....++++.|+++|+.+.++++..+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 135 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR 135 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC
Confidence 632111 1 235668899999999999988876543
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=84.66 E-value=22 Score=32.25 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCEEeEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC---CCCCceeecC
Q 015161 194 AELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQP 268 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG--~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~---~l~~~~iEeP 268 (412)
.+++.++.+.|-..+=+..- ..++.-.+.++.+|+.+ ..+|.|.. |.+|++.-.+.=-|+ =+. -|-++-
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLs-GYT~~t 127 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLS-GYTPYT 127 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTT-TSSTTS
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEcccc-cCCCCC
Confidence 45567778889999888765 23345556789999988 89999984 577775543321110 010 133443
Q ss_pred CC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHH
Q 015161 269 VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEI 331 (412)
Q Consensus 269 ~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i 331 (412)
-. ..|++-+++|.+ .++||.+.-.++++++.+++++.|+.-++ +| ||.-..+
T Consensus 128 ~~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV------VGsAITrP~~I 182 (192)
T PF04131_consen 128 KGDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV------VGSAITRPQEI 182 (192)
T ss_dssp TTSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE------E-HHHH-HHHH
T ss_pred CCCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE------ECcccCCHHHH
Confidence 33 235666666653 38999888899999999999999976654 46 8865544
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=84.58 E-value=43 Score=36.05 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~vDaN~----~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+.+=.++ +|. +++. ..+++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 557778888888889999999853311 14678999999998888777654332 444 3444 35777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-----CCCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-----SCRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-----s~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++....+-.++. |.+.+....+..+ +.+.-+.... ..++++.+ +++.+.| +|.+.++=+- |
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G-ad~I~i~Dt~-G 178 (592)
T PRK09282 104 KAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG-CDSICIKDMA-G 178 (592)
T ss_pred HHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcC-C
Confidence 77777876556666664 4444544333333 2344443222 23455443 3444555 7888887654 5
Q ss_pred -H--HHHHHHHHHH-HHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
. ..+.++.... ++.++++.+|+...+++ +.+..++|
T Consensus 179 ~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl--a~An~laA 218 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVDLPVQLHSHCTSGL--APMTYLKA 218 (592)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCc--HHHHHHHH
Confidence 3 3455555544 44688888888654444 34444444
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=84.57 E-value=5.5 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecC--CC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 316 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i~~~a~d~v 316 (412)
..+.++|.++++.+ +.++. |||-. +. +.-.+.++.+++. ..+..|..|=.+.++. ++.++.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 36789999999999 66774 99995 32 2234555666542 2356787776555654 677778777 6888
Q ss_pred EecCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015161 317 NIKLAKVGVLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 317 ~ik~~~~Git~~l~i~~~A~~~gi~~~~~ 345 (412)
.+.... +.....++++.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 766543 2223467888999999999875
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.54 E-value=20 Score=34.68 Aligned_cols=115 Identities=19% Similarity=0.383 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEE----------EEeCCC-CC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSF----------ILDANE-GY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l----------~vDaN~-~~-~~~~A~~~~~~l 255 (412)
+.+.+..+.||+.+=+.-. -+.++.++..+.+.+. += +.+| ..|.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 4556677889999998876 4567777766655542 21 1111 112222 26 499999999875
Q ss_pred H----------cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. -.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~Gi~-KiNi~ 232 (284)
T PRK12737 168 GIDSLAVAIGTAHGL---YKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLGIC-KVNVA 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCCCe-EEEeC
Confidence 3 1343 44555 467888888875 56899876 5576778889999998843 34554
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.51 E-value=44 Score=32.99 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee----
Q 015161 192 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---- 266 (412)
+..+.++.+.+.|...+-+-.. .+.+.-.+.++.+++.+|++.+++ ..--+.++|... .+.+.. +|=
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 3456677788899998887664 223444677899999888888887 333556666444 344543 321
Q ss_pred ----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 ----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.....-++..+.++.+.. ...++||.+|--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 112223455566665432 23579999999999999999999987 577765
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=84.32 E-value=40 Score=32.36 Aligned_cols=176 Identities=21% Similarity=0.293 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQE-AVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~~~~~~l~vDaN----~~~~--~~~-A~~~~~ 253 (412)
+.++..+.+..+.+.|+..+-+..+. .-+.|.++++.+++..++.++..=++ -+|. +.. -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 56777778888889999999876542 13577899999999877655542111 2232 122 244666
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-----CCCCCCHHHHHH----HHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-----DESCRSLDDVKK----IVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-----dEs~~~~~~~~~----~i~~~a~d~v~ik~~~~G 324 (412)
...+.++....+-.|++ |++.+.+..+..++ .+.-+.. +-+.++.+.+.+ +.+.| +|.+.++=+- |
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~-G 173 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMA-G 173 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-C
Confidence 67777765345655654 45555554443332 3444332 224556555543 34445 6776665433 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 325 ---VLGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 325 ---it~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
.....+++...+ ..++++.+|+.... |++.+-.++|.-..+.++|
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~--GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHLHTHDTS--GLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEecCCC--ChHHHHHHHHHHhCCCEEE
Confidence 335556555544 45788888875433 4444444444333445554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=83.99 E-value=22 Score=34.37 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----C
Q 015161 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----H 230 (412)
Q Consensus 156 l~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~ 230 (412)
+.+..++..++|+.-.|.... + .+.+.+..+.||+.+=+.-. .+.++.++..+.+.+. +
T Consensus 63 ~~~~~a~~~~VPValHLDHg~------------~----~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~g 126 (282)
T TIGR01858 63 LCSAASTTYNMPLALHLDHHE------------S----LDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQD 126 (282)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------C----HHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 444557777777654443211 2 24456677889999999876 4567777776666552 2
Q ss_pred C--CcEE----------EEeCC-CCC-CHHHHHHHHHHHH----------cCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 231 P--DSSF----------ILDAN-EGY-KPQEAVEVLEKLY----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 231 ~--~~~l----------~vDaN-~~~-~~~~A~~~~~~l~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
= +.+| ..+.+ ..| ++++|.+|+++.. -.|+ |-.+| .-|++-++++++
T Consensus 127 v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~---- 197 (282)
T TIGR01858 127 CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE---- 197 (282)
T ss_pred CeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----
Confidence 1 1111 11111 226 4999999998653 1343 44555 567888998875
Q ss_pred ccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 287 KFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 287 ~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 198 ~~~iPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 230 (282)
T TIGR01858 198 VVDVPLVLHGASDVPDEDVRRTIELGIC-KVNVA 230 (282)
T ss_pred HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 56899876 5566677889999988743 34443
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=60 Score=34.10 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee---cCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 269 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---eP~ 269 (412)
.+.++.+.+.|...+-+.... +-..-++.++.+++.+|++.+++ ..-.|.++|.... +.|.. +|- -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 678888899999999888741 22234678899999888888876 4556677765443 45553 542 111
Q ss_pred -----------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 270 -----------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 270 -----------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
..-++..+.++.+.. ++.++||.+|--+.+..|+.+++..| +|.+++--.
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~ 375 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALG-ADCVMLGSL 375 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECch
Confidence 112344444444332 25689999999999999999999988 577766433
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.89 E-value=18 Score=36.62 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=69.8
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. .||=-+| +++++..+++.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 5565 47899999999999999985 9996333 344566666653 1223334332 33457888888887
Q ss_pred CCCCEEEecCCC--------C-----c-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 NLADVINIKLAK--------V-----G-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ~a~d~v~ik~~~--------~-----G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+ ++.+.+=... . . +....+.+++|++.|+.+.++++..+
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 6 5666542211 1 1 23456689999999999998865433
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.75 E-value=23 Score=34.32 Aligned_cols=115 Identities=14% Similarity=0.298 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEE----------EEeC-CCCC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSF----------ILDA-NEGY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l----------~vDa-N~~~-~~~~A~~~~~~l 255 (412)
+.+.++.+.||+.+=+.-. -++++.++.-+.+.+. += +.+| ..+. ...| ++++|.+|+++.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 167 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT 167 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH
Confidence 4566677889999998876 4567777766666542 20 1111 1111 1236 499999999874
Q ss_pred H----------cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. -.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 232 (284)
T PRK09195 168 GIDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLGIC-KVNVA 232 (284)
T ss_pred CcCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 2 1343 45555 567888888875 56899977 5566677889999998844 34443
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=83.74 E-value=49 Score=32.86 Aligned_cols=129 Identities=18% Similarity=0.282 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
.++++-.+++++....-...+-+-+|.. ++|.++++++.++++.. -|.+|..++++... ++.++.+.+. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 3667666666554333344455566632 47899999999986544 46789999987654 3444444331 1
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec-------CCC----Cc---HHHHHHHH
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-------LAK----VG---VLGALEII 332 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik-------~~~----~G---it~~l~i~ 332 (412)
.+.+|..| ++.+.++.+++++.| +|++.+- .++ +| ++...+++
T Consensus 149 ---------------------p~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 ---------------------PEHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ---------------------CCCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 12455554 567888999999987 6777533 111 23 45566778
Q ss_pred HHHHHcCCcEEEccCc
Q 015161 333 EVVRASGLNLMIGGMV 348 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~~ 348 (412)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 8888889999876543
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=36 Score=33.04 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----D----ANEGY-KPQEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----D----aN~~~-~~~~A~~~~~~l~~ 257 (412)
+.+.++.+.||+.+=+.-. -++++.++.-+.+.+. +- +.+|- + | ....| ++++|.+|+++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 3455677889999999877 4667788777666552 21 11110 1 1 11226 49999999987631
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 233 (285)
T PRK07709 171 DCLAPALGSVHGP---YKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLGTS-KINVN 233 (285)
T ss_pred CEEEEeecccccC---cCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 233 43444 467888888865 57899977 5566677889999998844 34554
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=17 Score=35.29 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 289 GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 289 ~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++||++.- ...+.+.+.++++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 38999874 566899999999998 799999998864 6679999999999999884
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=15 Score=35.82 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++||+..-...+.+.+.++++.| ++.+|+|-...- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67998865444888899999877 899999988875 5568899999999999884
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=62 Score=33.72 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEEE--e-CC-CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFIL--D-AN-EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~v--D-aN-~~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+.+--|.. -+.+.++++.+++..++..+.. = .| -+|. +++. ..|++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 567788888888899999999843311 1357899999999877776643 2 23 2452 4553 34677
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-----~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++...-+-.|++ |.+.+....+..+ +.+.-+....+ .++.+.+ +++.+.| +|.+.++=+- |
T Consensus 103 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~-G 177 (467)
T PRK14041 103 KVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA-G 177 (467)
T ss_pred HHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-C
Confidence 77777776445566665 4555554433333 34555543332 2343333 3444555 6888777553 6
Q ss_pred -H--HHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ .++.+++...+ +.++++.+|+....++ +.+-.++|
T Consensus 178 ~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~Gl--A~AN~laA 217 (467)
T PRK14041 178 LLTPKRAYELVKALKKKFGVPVEVHSHCTTGL--ASLAYLAA 217 (467)
T ss_pred CcCHHHHHHHHHHHHHhcCCceEEEecCCCCc--HHHHHHHH
Confidence 3 34555554443 4588998888644444 44444444
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=28 Score=33.77 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh--CCCcEE--------------EEe--CCCCCC-HHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF--------------ILD--ANEGYK-PQEAVEVLEK 254 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~--~~~~~l--------------~vD--aN~~~~-~~~A~~~~~~ 254 (412)
+.+++..+.||+.+-+.-. .+.++.++..+++.+. ..++.+ ..+ ....+| +++|.+|.++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~ 167 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR 167 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH
Confidence 3455667789999999765 3456677766666542 111111 111 112254 7999999876
Q ss_pred HHcCCCCCce-----eecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 255 LYEMGVTPVL-----FEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 255 l~~~~l~~~~-----iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
..---+.+-. ....-+..+++.++++++ .+++|+.+ |=|=.+.++++++++.| ++-+|+.-
T Consensus 168 tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T 234 (286)
T PRK06801 168 TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYT 234 (286)
T ss_pred HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehh
Confidence 5211011000 112223567888888864 56788855 66777788999999988 55666643
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=82.55 E-value=27 Score=32.99 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=75.6
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~-vDaN~~~~~~~A~~~~~~l 255 (412)
.+.+..+.+|....++-.++. |-.-+|+.|-.|. .+..+.+++.++. -.++..+ + +.=++ ..+++|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpy---c~dd~----~~ar~l 140 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPY---CTDDP----VLAKRL 140 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEE---eCCCH----HHHHHH
Confidence 355677888876655555543 5688999886432 2445666777765 2444444 2 11133 345666
Q ss_pred HcCCCCCceeecC----CC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.+.. .+ -| +. ..+.+-++.+++ ..++||..|=-+.+++|+.++++.|+ |.+.+
T Consensus 141 ~~~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelGA-dgVlV 203 (248)
T cd04728 141 EDAGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELGA-DAVLL 203 (248)
T ss_pred HHcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 667653 55 33 11 124555666653 46899999999999999999999984 66544
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=23 Score=34.69 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=47.6
Q ss_pred cccC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~-ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.. +||++.- ...+.+...++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 70 ~~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 70 ERYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred HhcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3554 9999874 566899999999997 799999988863 6679999999999999873
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=82.32 E-value=16 Score=34.44 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC-------C----C----CHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE-------G----Y----KPQEAVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~-------~----~----~~~~A~~~~~ 253 (412)
+++++.+-++++.+.|-..+||-=+ .+-+++++++++++=-+.=+.|+.. + + ..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 5688888899999999999998754 2445678888887512334577621 0 0 2568899999
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
.+++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999998766799965 3555677775 57889865
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=82.16 E-value=14 Score=35.78 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 290 VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 290 ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
+||+..- ...+++.++++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 8998864 566899999999998 799999998864 6678999999999999874
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=82.07 E-value=23 Score=35.54 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=70.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeec--CCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. +||= |.. +++++.++.+.+ ......|+.- .-.+..+++++++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~-~r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSL-ARALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEE-cccCHHHHHHHHHc
Confidence 5555 46789999999999999985 9997 544 456666676654 2334555432 13568899999887
Q ss_pred CCCCEEEec-----------CCCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 311 NLADVINIK-----------LAKV--G-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 311 ~a~d~v~ik-----------~~~~--G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+ ++.+.+= ..+. . +..+.+.+++|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6 6777661 1111 1 34577899999999999877643
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.80 E-value=21 Score=34.62 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=46.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~ 342 (412)
++.++||+..- ...+.+.+.++++.| ++.+.+|-+..= +..++++.++|+++|+.+
T Consensus 71 ~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 71 DKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46789998864 556888999999987 789999988863 567899999999999987
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.79 E-value=31 Score=33.46 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=84.6
Q ss_pred HHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----C
Q 015161 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----H 230 (412)
Q Consensus 156 l~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~ 230 (412)
+....++..++|+.-.|.... + .+.+.++.+.||+.+=+.-. -+.++.++..+.+.+. +
T Consensus 65 ~~~~~a~~~~VPValHLDHg~------------~----~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~g 128 (286)
T PRK12738 65 LCSAYSTTYNMPLALHLDHHE------------S----LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQD 128 (286)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------C----HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 344557777777654443211 2 34455667889999998876 4567777766666542 2
Q ss_pred C--CcEE----------EEeCC-CCC-CHHHHHHHHHHHHc----------CCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 231 P--DSSF----------ILDAN-EGY-KPQEAVEVLEKLYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 231 ~--~~~l----------~vDaN-~~~-~~~~A~~~~~~l~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
= +.+| -.+.+ ..| ++++|.+|.++..- .|. |-..| .-|++-++++++
T Consensus 129 v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~---Y~~~p--~Ldfd~l~~I~~---- 199 (286)
T PRK12738 129 CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL---YSKTP--KIDFQRLAEIRE---- 199 (286)
T ss_pred CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC---CCCCC--cCCHHHHHHHHH----
Confidence 1 1111 11111 126 49999999987531 233 33333 467888988875
Q ss_pred ccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 287 KFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 287 ~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++|+.+ |=|-...++++++++.|.+- +|+.
T Consensus 200 ~~~vPLVLHGgSG~~~e~~~kai~~GI~K-iNi~ 232 (286)
T PRK12738 200 VVDVPLVLHGASDVPDEFVRRTIELGVTK-VNVA 232 (286)
T ss_pred HhCCCEEEeCCCCCCHHHHHHHHHcCCeE-EEeC
Confidence 57899977 55666678899999887443 4443
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.74 E-value=47 Score=32.20 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----D----ANEGY-KPQEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----D----aN~~~-~~~~A~~~~~~l~~ 257 (412)
+.++++.+.||+.+=+.-. -++++.++.-+.+.+. +- +.+|- + | .+..| ++++|.+|+++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 91 EKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC
Confidence 3445677889999999876 4667777776666542 21 11110 1 1 12236 49999999987431
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+- +|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~GI~K-iNi~ 233 (286)
T PRK08610 171 DALAPALGSVHGP---YKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFGTAK-INVN 233 (286)
T ss_pred CEEEeeccccccc---cCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCCCeE-EEec
Confidence 232 43444 457888888875 56899977 55666778899999988443 4444
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.34 E-value=50 Score=34.15 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee---c
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 267 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---e 267 (412)
+..++++.+.+.|...+-+-... +-..-.+.++.+|+.+|++.+++ -.-.|.++|....+ .|.. +|= -
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 34566778888899999888742 22344566788888888888776 44556777755544 3432 330 1
Q ss_pred C-----------CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 268 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 268 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
| +..-++....++.+.. ...++||.+|--+.+..|+.+++..| ++.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~G-A~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAG-ADAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 1 1112344455554332 24689999999999999999999998 4666553
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=81.32 E-value=31 Score=34.27 Aligned_cols=141 Identities=12% Similarity=0.048 Sum_probs=77.6
Q ss_pred HHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 197 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~-vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
.+.+.+.|...+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|-+..-.-..
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 345556787777765542 2223344566666666654433 333 4677788888888888877655577777776666
Q ss_pred HHHHHhHHHhhcccC--CeEEeCCCC-CC--HHHHHHHHHcCCCCEEEecCCCCc---H---HHHHHHHHHHHHcCCc
Q 015161 275 EGLGHVSHIAKDKFG--VSVAADESC-RS--LDDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 341 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~--ipIa~dEs~-~~--~~~~~~~i~~~a~d~v~ik~~~~G---i---t~~l~i~~~A~~~gi~ 341 (412)
+...++.+.+++..+ +||...=.. .+ ......++++| ++. +|.+-.| - ..+-.++.+.+..|+.
T Consensus 172 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 172 DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 666666555555554 666443221 11 22334455555 454 4444433 1 2233445555555544
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=81.31 E-value=26 Score=34.05 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred ccc--CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKF--GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~--~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++. ++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 72 ~~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 72 EAYPYGVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred HhccCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 355 78999864 567899999999987 899999988863 5678999999999999874
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=81.24 E-value=29 Score=31.67 Aligned_cols=143 Identities=16% Similarity=0.296 Sum_probs=91.4
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-.-. ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|.. |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 344577888899999999999999998853 3446778888888887 5566777888888755544 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC-cHHHHHHHHHHHHHcCCcEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~-Git~~l~i~~~A~~~gi~~~ 343 (412)
+=-|.-..+ ..+.++ +.++|+.-| +.|+.++.++++.| ++++.+=|... |-...+|...-- --+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p-~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP-FPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT-TTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc-CCCCeEE
Confidence 777754322 333332 458898876 67999999999988 68987777664 633333322211 2368888
Q ss_pred EccCc
Q 015161 344 IGGMV 348 (412)
Q Consensus 344 ~~~~~ 348 (412)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86643
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.98 E-value=24 Score=32.46 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
+.+++.+.++.+-+.|+. .+|=.+...+. +.++++++ +.+ +.|.+| ++.+.+++..+++.|+ |++..-
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaG-TV~~~~~~~~a~~aGA-~fivsp- 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAG-TVLSPEQVDRLADAGG-RLIVTP- 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEE-ecCCHHHHHHHHHcCC-CEEECC-
Confidence 789999999999999986 99988776543 34555553 344 444444 7889999999999985 666431
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 321 AKVGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 321 ~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. .. .++.+.|+..|+.+.+|++..+.+
T Consensus 91 ~---~~--~~v~~~~~~~~~~~~~G~~t~~E~ 117 (206)
T PRK09140 91 N---TD--PEVIRRAVALGMVVMPGVATPTEA 117 (206)
T ss_pred C---CC--HHHHHHHHHCCCcEEcccCCHHHH
Confidence 1 21 466788889999999998765443
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=80.85 E-value=27 Score=35.04 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=69.8
Q ss_pred eCCCC----CCHHHHHHHHHHHHcCCCCCceeecCCCC---CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~~----~~~~~A~~~~~~l~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+|+ |+.++-+++++.|.+.|+. .||=-+|. .+++..+++.+. ..+..++.= .-.+.+++..+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcC
Confidence 55554 7899999999999999985 99994442 345666666532 223334321 22467888888877
Q ss_pred CCCCEEEecCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ~a~d~v~ik~~~--------~G------it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+ ++.+.+=... .| +....+++++|+++|+.+.+++...+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~ 137 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS 137 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC
Confidence 6 5655443221 11 23355789999999999998876544
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.72 E-value=23 Score=34.31 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=47.6
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 71 EKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 36689999864 567889999999987 789999988863 5668999999999999873
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=25 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=47.6
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+++.++++++.| ++.+++|-+..- +..++++..+|+.+|+.+.
T Consensus 65 ~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 65 KRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999874 566899999999987 789999988864 5668999999999999883
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=80.68 E-value=46 Score=30.80 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC-CeEEeCCC-CC-
Q 015161 223 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADES-CR- 299 (412)
Q Consensus 223 v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs-~~- 299 (412)
++.+++.+.++.+...-...+++++..++++.+.+++.....|-+-.-.-..+...++.+.+++..+ +||...=+ -.
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 4444445566666665666677777777777777766554566666655555555555555555555 66644211 11
Q ss_pred -CHHHHHHHHHcCCCCEE
Q 015161 300 -SLDDVKKIVKGNLADVI 316 (412)
Q Consensus 300 -~~~~~~~~i~~~a~d~v 316 (412)
........++.| ++.+
T Consensus 194 la~An~laA~~aG-a~~i 210 (237)
T PF00682_consen 194 LAVANALAALEAG-ADRI 210 (237)
T ss_dssp -HHHHHHHHHHTT--SEE
T ss_pred chhHHHHHHHHcC-CCEE
Confidence 122344455655 5664
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=80.44 E-value=18 Score=34.15 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=83.7
Q ss_pred cCCC-HHHHHHHHHHHHHcCCCEEeEe---cC------CChhHHHHHHHHHHHh--CCCcEE--EEeCCC--CCCHHHHH
Q 015161 186 PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSSF--ILDANE--GYKPQEAV 249 (412)
Q Consensus 186 ~~~~-~~~~~~~~~~~~~~Gf~~~KiK---vG------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~--~~~~~~A~ 249 (412)
+..+ +..+.+.++++.+.|...+-|- .| .++++-+++|++++++ .+++-| |-|+-. ....++|+
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 3444 8899999999999999888763 33 2456777899999986 355443 678854 66789999
Q ss_pred HHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
+.++...+.|....|+|-+.. .+.++++.+ +.++|+..-.. .+..++.++-+.| +..+.
T Consensus 159 ~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~ 217 (238)
T PF13714_consen 159 ERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVS 217 (238)
T ss_dssp HHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEE
T ss_pred HHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEE
Confidence 999999999876678888744 444677765 45788876553 3234566666666 44443
|
... |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=80.32 E-value=48 Score=30.46 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEeEecCC--Chh--HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee--ec-
Q 015161 195 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 267 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--~~~--~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i--Ee- 267 (412)
++++.+.+.|-..+=+-... .++ ...+.++++++.+ ++.++++.+ +++++. .+.+.++. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~----~a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEAL----NAAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHH----HHHHcCCC--EEEccCc
Confidence 45667777898876664431 122 4556777888878 788888654 666653 34445653 55 20
Q ss_pred ---C----CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 268 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 268 ---P----~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ ....+++.++++++ ..++||...=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 11234566666654 4579999988899999999999988 788755
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.25 E-value=13 Score=38.81 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCEEeEecCCC-hhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCceee---
Q 015161 192 EAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~~-~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~~iE--- 266 (412)
+..+.++.+.++|-..+=+..... -..-++.++.||+.+|++.++. |.- |.++|...++ .|.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---t~~~a~~l~~----aGad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---TAEGTRDLVE----AGAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---CHHHHHHHHH----cCCC--EEEECc
Confidence 456777888889999987776532 2344567889999999988886 432 4566554443 3321 222
Q ss_pred -----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 -----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 -----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
-.+..-++....++++..+ ..++||.+|--+.+..|+.+++..|+ |.+++
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~ga-~~v~~ 358 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAGA-SNVMI 358 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcCC-Ceeec
Confidence 1112236777777665332 46899999999999999999999884 55544
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=80 Score=32.94 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=73.5
Q ss_pred HHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa--N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.++...+.|...|.+-... +++.-...++.+++.|..+...++. ...++.+..+++++++.+.|.....|-+..---
T Consensus 100 fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l 179 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL 179 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc
Confidence 3556667788887776653 2222223345555555544444432 234667778888888888777656777777766
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
......+|.+.++++.++||...=+.. .......++++| +|++..-++
T Consensus 180 ~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~ 230 (467)
T PRK14041 180 TPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAG-ADMFDTAIS 230 (467)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeecc
Confidence 666666666666666677775533221 233344555666 666544433
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=80.07 E-value=13 Score=34.61 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=60.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCC
Q 015161 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 235 l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~ 313 (412)
-.-+++...+++++..++..-+.+++++.|+|-==..-+.+-.+++++ .+ ++||..|=-+.+.++++++++.+ +
T Consensus 124 ~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-A 198 (219)
T cd02812 124 RVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-A 198 (219)
T ss_pred eeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-C
Confidence 345566677899999999999999988889992112245555666653 55 89999999999999999999877 5
Q ss_pred CEEEe
Q 015161 314 DVINI 318 (412)
Q Consensus 314 d~v~i 318 (412)
|.+.+
T Consensus 199 D~VVV 203 (219)
T cd02812 199 DTIVV 203 (219)
T ss_pred CEEEE
Confidence 77655
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 412 | ||||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 1e-57 | ||
| 3ik4_A | 365 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-57 | ||
| 3s5s_A | 389 | Crystal Structure Of Putative Mandelate RacemaseMUC | 6e-54 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 7e-51 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 2e-47 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 1e-45 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 5e-35 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 4e-33 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 3e-28 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 1e-22 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-18 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 2e-18 | ||
| 1jpd_X | 324 | L-Ala-DL-Glu Epimerase Length = 324 | 2e-18 | ||
| 3rit_A | 356 | Crystal Structure Of Dipeptide Epimerase From Methy | 3e-18 | ||
| 3eez_A | 378 | Crystal Structure Of A Putative Mandelate RacemaseM | 5e-18 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 2e-17 | ||
| 3fcp_A | 381 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-17 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 3e-17 | ||
| 2zc8_A | 369 | Crystal Structure Of N-Acylamino Acid Racemase From | 4e-17 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 9e-17 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 4e-16 | ||
| 2ggg_A | 375 | The Mutant A68c-D72c Of Deinococcus Radiodurans N-A | 5e-16 | ||
| 2ggj_A | 375 | The Mutant Y218c Of Deinococcus Radiodurans N-Acyla | 5e-16 | ||
| 1r0m_A | 375 | Structure Of Deinococcus Radiodurans N-Acylamino Ac | 5e-16 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 6e-16 | ||
| 2ggi_A | 375 | The Mutant E149c-A182c Of Deinococcus Radiodurans N | 1e-15 | ||
| 2pgw_A | 384 | Crystal Structure Of A Putative Muconate Cycloisome | 8e-15 | ||
| 2muc_A | 373 | Muconate Cycloisomerase Variant F329i Length = 373 | 3e-14 | ||
| 1muc_A | 373 | Structure Of Muconate Lactonizing Enzyme At 1.85 An | 3e-14 | ||
| 1bkh_A | 369 | Muconate Lactonizing Enzyme From Pseudomonas Putida | 3e-14 | ||
| 3muc_A | 369 | Muconate Cycloisomerase Variant I54v Length = 369 | 5e-14 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 5e-14 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 9e-14 | ||
| 1f9c_A | 372 | Crystal Structure Of Mle D178n Variant Length = 372 | 1e-13 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 2e-13 | ||
| 1sja_A | 368 | X-Ray Structure Of O-Succinylbenzoate Synthase Comp | 3e-13 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 4e-13 | ||
| 4izg_A | 391 | Crystal Structure Of An Enolase (mandelate Racemase | 5e-13 | ||
| 4h83_A | 388 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 6e-13 | ||
| 4gfi_A | 329 | Crystal Structure Of Efi-502318, An Enolase Family | 1e-12 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 2e-12 | ||
| 4a6g_A | 368 | N-Acyl Amino Acid Racemase From Amycalotopsis Sp. T | 2e-12 | ||
| 4e8g_A | 391 | Crystal Structure Of An Enolase (Mandelate Racemase | 2e-12 | ||
| 3bjs_A | 428 | Crystal Structure Of A Member Of Enolase Superfamil | 1e-11 | ||
| 3i6t_A | 381 | Crystal Structure Of Muconate Cycloisomerase From J | 2e-11 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 2e-11 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 2e-11 | ||
| 2chr_A | 370 | A Re-Evaluation Of The Crystal Structure Of Chlorom | 2e-11 | ||
| 3i6e_A | 385 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 4e-11 | ||
| 1wue_A | 386 | Crystal Structure Of Protein Gi:29375081, Unknown M | 5e-11 | ||
| 3no1_A | 398 | Crystal Structure Of Mandelate Racemase/muconate La | 1e-10 | ||
| 3msy_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-10 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 1e-10 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 2e-10 | ||
| 2oz8_A | 389 | Crystal Structure Of Putative Mandelate Racemase Fr | 4e-10 | ||
| 2rdx_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 6e-10 | ||
| 3t8q_A | 370 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-09 | ||
| 4a35_A | 441 | Crystal Structure Of Human Mitochondrial Enolase Su | 3e-09 | ||
| 2hne_A | 436 | Crystal Structure Of L-fuconate Dehydratase From Xa | 6e-09 | ||
| 3ct2_A | 382 | Crystal Structure Of Muconate Cycloisomerase From P | 6e-09 | ||
| 2hxt_A | 441 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 6e-09 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 8e-09 | ||
| 4h1z_A | 412 | Crystal Structure Of Putative Isomerase From Sinorh | 1e-08 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 1e-08 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 1e-08 | ||
| 2hxu_A | 441 | Crystal Structure Of K220a Mutant Of L-Fuconate Deh | 3e-08 | ||
| 1yey_A | 444 | Crystal Structure Of L-Fuconate Dehydratase From Xa | 3e-08 | ||
| 2ppg_A | 399 | Crystal Structure Of Putative Isomerase From Sinorh | 5e-08 | ||
| 2ps2_A | 371 | Crystal Structure Of Putative Mandelate RacemaseMUC | 6e-08 | ||
| 3uxk_A | 383 | P. Putida Mandelate Racemase Co-Crystallized With T | 2e-07 | ||
| 1mra_A | 359 | Mandelate Racemase Mutant D270n Co-Crystallized Wit | 3e-07 | ||
| 4dye_A | 398 | Crystal Structure Of An Enolase (Putative Sugar Iso | 3e-07 | ||
| 1mns_A | 357 | On The Role Of Lysine 166 In The Mechanism Of Mande | 3e-07 | ||
| 1dtn_A | 359 | Mandelate Racemase Mutant D270n Co-crystallized Wit | 3e-07 | ||
| 1mdr_A | 359 | The Role Of Lysine 166 In The Mechanism Of Mandelat | 3e-07 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 6e-07 | ||
| 1mdl_A | 359 | Mandelate Racemase Mutant K166r Co-Crystallized Wit | 6e-07 | ||
| 3n4e_A | 393 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-06 | ||
| 2pce_A | 386 | Crystal Structure Of Putative Mandelate RacemaseMUC | 2e-06 | ||
| 3hpf_A | 391 | Crystal Structure Of The Mutant Y90f Of Divergent G | 2e-06 | ||
| 2oqh_A | 385 | Crystal Structure Of An Isomerase From Streptomyces | 2e-06 | ||
| 2oqy_A | 391 | The Crystal Structure Of Muconate Cycloisomerase Fr | 4e-06 | ||
| 2gdq_A | 382 | Crystal Structure Of Mandelate Racemase/muconate La | 7e-06 | ||
| 3mwc_A | 400 | Crystal Structure Of Probable O-Succinylbenzoic Aci | 9e-06 | ||
| 3toy_A | 383 | Crystal Structure Of Enolase Brado_4202 (Target Efi | 3e-05 | ||
| 4e4f_A | 426 | Crystal Structure Of Enolase Pc1_0802 (Target Efi-5 | 3e-05 | ||
| 2qgy_A | 391 | Crystal Structure Of An Enolase From The Environmen | 4e-05 | ||
| 2nql_A | 388 | Crystal Structure Of A Member Of The Enolase Superf | 6e-05 | ||
| 4dn1_A | 408 | Crystal Structure Of An Enolase (Mandelate Racemase | 8e-05 | ||
| 3u4f_A | 388 | Crystal Structure Of A Mandelate Racemase (Muconate | 8e-05 | ||
| 4gir_A | 422 | Crystal Structure Of An Enolase Family Member From | 1e-04 | ||
| 3tj4_A | 372 | Crystal Structure Of An Enolase From Agrobacterium | 1e-04 | ||
| 3p3b_A | 392 | Crystal Structure Of Galacturonate Dehydratase From | 2e-04 | ||
| 3mzn_A | 450 | Crystal Structure Of Probable Glucarate Dehydratase | 3e-04 | ||
| 3v5c_A | 392 | Crystal Structure Of The Mutant E234a Of Galacturon | 4e-04 | ||
| 3n4f_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 5e-04 | ||
| 3cyj_A | 372 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 7e-04 |
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
| >pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Herpetosiphon Aurantiacus Length = 365 | Back alignment and structure |
|
| >pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM CELLULOSUM Length = 389 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase Length = 324 | Back alignment and structure |
|
| >pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From Methylococcus Capsulatus Complexed With Mg And Dipeptide L-Arg-D-Lys Length = 356 | Back alignment and structure |
|
| >pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme From Silicibacter Pomeroyi Length = 378 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Klebsiella Pneumoniae Length = 381 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From Thermus Thermophilus Hb8 Length = 369 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid Racemase At 1.3 : Insights Into A Flexible Binding Pocket And Evolution Of Enzymatic Activity Length = 375 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase From Sinorhizobium Meliloti 1021 Length = 384 | Back alignment and structure |
|
| >pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i Length = 373 | Back alignment and structure |
|
| >pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 369 | Back alignment and structure |
|
| >pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v Length = 369 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant Length = 372 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed With N-Acetylmethionine Length = 368 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (target Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine (product) Length = 391 | Back alignment and structure |
|
| >pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME (Efi Target:502127) Length = 388 | Back alignment and structure |
|
| >pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens With Homology To Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With Ordered Loop) Length = 329 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp. Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl Methionine Length = 368 | Back alignment and structure |
|
| >pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup) From Paracococus Denitrificans Pd1222 (Target Nysgrc-012907) With Bound Mg Length = 391 | Back alignment and structure |
|
| >pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Polaromonas Sp. Js666 Length = 428 | Back alignment and structure |
|
| >pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Jannaschia Sp. Length = 381 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate Cycloisomerase Length = 370 | Back alignment and structure |
|
| >pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi. Length = 385 | Back alignment and structure |
|
| >pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member Of Enolase Superfamily From Enterococcus Faecalis V583 Length = 386 | Back alignment and structure |
|
| >pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From A Marine Actinobacterium In Complex With Magnesium Length = 398 | Back alignment and structure |
|
| >pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From A Marine Actinobacterium Length = 379 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Mesorhizobium Loti Length = 389 | Back alignment and structure |
|
| >pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Nubinhibens Ism Length = 379 | Back alignment and structure |
|
| >pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME Family Protein From Hoeflea Phototrophica Length = 370 | Back alignment and structure |
|
| >pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase Superfamily Member 1 (Enosf1) Length = 441 | Back alignment and structure |
|
| >pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 436 | Back alignment and structure |
|
| >pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Pseudomonas Fluorescens Length = 382 | Back alignment and structure |
|
| >pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And D-Erythronohydroxamate Length = 441 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti, Open Loop Conformation (Target Efi-502104) Length = 412 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And L-Fuconate Length = 441 | Back alignment and structure |
|
| >pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 444 | Back alignment and structure |
|
| >pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti Length = 399 | Back alignment and structure |
|
| >pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Aspergillus Oryzae Length = 371 | Back alignment and structure |
|
| >pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The Intermediate Analogue Benzohydroxamate Length = 383 | Back alignment and structure |
|
| >pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With (S)-Atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase, Target Efi- 502095) From Streptomyces Coelicolor, No Mg, Ordered Loop Length = 398 | Back alignment and structure |
|
| >pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (R)-Alpha-Phenylglycidate Length = 357 | Back alignment and structure |
|
| >pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With (s)-atrolactate Length = 359 | Back alignment and structure |
|
| >pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate Racemase From Pseudomonas Putida: Mechanistic And Crystallographic Evidence For Stereospecific Alkylation By (r)-alpha-phenylglycidate Length = 359 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)- Mandelate Length = 359 | Back alignment and structure |
|
| >pdb|3N4E|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING From Paracoccus Denitrificans Pd1222 Length = 393 | Back alignment and structure |
|
| >pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseovarius Nubinhibens Ism Length = 386 | Back alignment and structure |
|
| >pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent Galactarate Dehydratase From Oceanobacillus Iheyensis Complexed With Mg And Galactarate Length = 391 | Back alignment and structure |
|
| >pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces Coelicolor A3(2) Length = 385 | Back alignment and structure |
|
| >pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From Oceanobacillus Iheyensis Length = 391 | Back alignment and structure |
|
| >pdb|2GDQ|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From Bacillus Subtilis At 1.8 A Resolution Length = 382 | Back alignment and structure |
|
| >pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid Synthet Kosmotoga Olearia Length = 400 | Back alignment and structure |
|
| >pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium And Acetate Bound Length = 383 | Back alignment and structure |
|
| >pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240) From Pectobacterium Carotovorum Subsp. Carotovorum Pc1 Length = 426 | Back alignment and structure |
|
| >pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental Genome Shotgun Sequencing Of The Sargasso Sea Length = 391 | Back alignment and structure |
|
| >pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily From Agrobacterium Tumefaciens Length = 388 | Back alignment and structure |
|
| >pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) With Bound Mg And Formate Length = 408 | Back alignment and structure |
|
| >pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate Lactonizing Enzyme Family Protein) From Roseovarius Nubinhibens Length = 388 | Back alignment and structure |
|
| >pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) With Homology To Mannonate Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound (Ordered Loops, Space Group P41212) Length = 422 | Back alignment and structure |
|
| >pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium Tumefaciens (Efi Target Efi-502087) No Mg Length = 372 | Back alignment and structure |
|
| >pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With D-Tartrate Length = 392 | Back alignment and structure |
|
| >pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From Chromohalobacter Salexigens Dsm 3043 Length = 450 | Back alignment and structure |
|
| >pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate Dehydratase From Geobacillus Sp. Complexed With Mg Length = 392 | Back alignment and structure |
|
| >pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10 Length = 392 | Back alignment and structure |
|
| >pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME- Like Protein From Rubrobacter Xylanophilus Length = 372 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-127
Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 10/366 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q +N+PL PF IA+ NV ++++L++G +G GEA P V+ E Q
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGT 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
L + + ++ A R +EMA++DA+ + MP
Sbjct: 67 SAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAA-----RCGLEMAMLDALTRHYHMP 121
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI 226
L FGGVS + TD+TI AA A +G ++K+K ++ D+ LRAI
Sbjct: 122 LHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAI 181
Query: 227 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
P + I+D N GY + A+ + VLFEQP+ R+DW G+ V+
Sbjct: 182 HQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA---- 237
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346
+ G +VAADES RS DV +I + A VINIKL K GV L++I + +A+GL LMIGG
Sbjct: 238 QSGFAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGG 297
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 406
MVE+ LAM F+ +L+AG G F FIDLDTPL ++E P + G+ +G + + GHG L
Sbjct: 298 MVESILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNL 357
Query: 407 HWDNIA 412
+
Sbjct: 358 EGHHHH 363
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-123
Identities = 135/389 (34%), Positives = 201/389 (51%), Gaps = 21/389 (5%)
Query: 25 SPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS 84
S + F+++T T+ + PL++PL PF IA+ + N+ + +EL+
Sbjct: 8 SSGVDLGTENLYFQSMTAPTTI--RALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELT 65
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFAS 144
+G G+GEA P E Q A A +++ + + + L A
Sbjct: 66 DGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVREWRRIALALPALPGMTGSA- 124
Query: 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204
R A+E A++DA+ + +PLW FGG + ++ TD+TI S AA A +G
Sbjct: 125 ----RCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARG 180
Query: 205 FTTLKLKVG---------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 255
TT+K+K+G + ++ D+ + AIR V P + ILD N GY +A+ +L+ L
Sbjct: 181 VTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDML 240
Query: 256 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315
G+ P LFEQPV +DD EGL + V VAADES S D ++ + DV
Sbjct: 241 GVHGIVPALFEQPVAKDDEEGLRRL----TATRRVPVAADESVASATDAARLARNAAVDV 296
Query: 316 INIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP 375
+NIKL K G++ AL+I + R +GL+LMIGGMVE+ LAM + +AG G F+F+DLDTP
Sbjct: 297 LNIKLMKCGIVEALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTP 356
Query: 376 LLLSEDPVLDGYEVSGAVYKFTNAR-GHG 403
L L+E+P G G T GHG
Sbjct: 357 LFLAENPFDGGMTYHGGTIDLTLIEAGHG 385
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-123
Identities = 116/351 (33%), Positives = 177/351 (50%), Gaps = 10/351 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + PF I S + NV + I L +G G+GEA V E +
Sbjct: 4 IVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEAL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+ + E++ +F + L G +AAV+ A +DA+++ +
Sbjct: 64 LAIENAVREMITGIDVRNYARIFEITDRL-FGFPSL-----KAAVQFATLDALSQELGTQ 117
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
+ L GG + I TD T+ I + + A K ++GF +K+KVG+NLKEDIE + I
Sbjct: 118 VCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIA 177
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 287
V + +I+DAN GY +EAVE +Y+ G+ ++EQPV R+D EGL V +
Sbjct: 178 KVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFV----RFH 233
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347
VAADES R+ DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M
Sbjct: 234 SPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCM 293
Query: 348 VETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398
E+ L + + H + G G F+F DLD+ L+L E+ + G + +
Sbjct: 294 GESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKD 344
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-123
Identities = 144/358 (40%), Positives = 192/358 (53%), Gaps = 10/358 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R L++PL PF IA ++ N+ + +EL++G +G+GEA LP E Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
A E + S A A +V + G A R A+E A++DA+ K MP
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASGGGAGA----ARCAIETAILDALTKRAGMP 122
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAI 226
LW FGG +TTDITI SP A E A + GF LK+KVG D + AI
Sbjct: 123 LWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAI 182
Query: 227 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
A P +S ILD N G EA+ ++ +G L EQPV RDDW+G+ V+
Sbjct: 183 HAAAPGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR---- 238
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346
+ GV VAADES S +DV ++ A V+NIKL K G+ AL+I V RA+GL LMIGG
Sbjct: 239 RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGG 298
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR-GHG 403
MVE+ LAM + +AGLG F F+DLDTPL L+E+P G+ G R GHG
Sbjct: 299 MVESVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 346 bits (891), Expect = e-118
Identities = 91/360 (25%), Positives = 158/360 (43%), Gaps = 15/360 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + R + PL P+ IA +++++N+ + I ++G +G G A HVT E +
Sbjct: 3 IADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEAC 62
Query: 108 M-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+ L L + +A LP A RAA++MAL D VA+ + +
Sbjct: 63 HAALDHDRLGWLMGRDIRTLPRLCRELAERLPAAPAA-----RAALDMALHDLVAQCLGL 117
Query: 167 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 226
PL + G +++ T +TI I E A ++ GF LK+K+ + ++D E LR +
Sbjct: 118 PLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRL 177
Query: 227 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285
+ + +D N+ Y + + + E+G+ EQP + L +
Sbjct: 178 HETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE--FIEQPFPAGRTDWLRALPK--- 232
Query: 286 DKFGVSVAADESCRSLDDVKKIVKGNLA-DVINIKLAKV-GVLGALEIIEVVRASGLNLM 343
+AADES D + A + NIKL K G+ A I + +G++LM
Sbjct: 233 -AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLM 291
Query: 344 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
G M E+R+++ A H + +++DLD L+ D G+ + + T G G
Sbjct: 292 WGCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 342 bits (879), Expect = e-116
Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 15/369 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + E V L PF I+ L NV +RI ++G +G+GE + E TA
Sbjct: 3 ITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTA 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+ + L + + + S ++ ++ G+ ++A +AL D A+ +P
Sbjct: 63 FIVGQYLAKGLIGTSCLDIVSNSLLMDAIIYGNSCI-----KSAFNIALYDLAAQHAGLP 117
Query: 168 LWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 226
L+ GG I TD T+ I P + A A + +K GF +K+KVG + + D+E +R I
Sbjct: 118 LYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMI 177
Query: 227 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285
R A + +DAN+G+ + A+E L L + E+PV R+ + L +
Sbjct: 178 REAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQ--HCEEPVSRNLYTALPKIRQ--- 232
Query: 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 344
+ + ADESC + D +++++ D N+KL+K G+ AL II + + + + +
Sbjct: 233 -ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQV 291
Query: 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHG 403
GG +E+RL A H++ + D DTPL+ DPV G + + G G
Sbjct: 292 GGFLESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLG 351
Query: 404 GFLHWDNIA 412
D ++
Sbjct: 352 AGYQKDYLS 360
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-115
Identities = 126/360 (35%), Positives = 181/360 (50%), Gaps = 13/360 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
L ++ + LL G+ A +AAVEMAL D A+ +
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA-----KAAVEMALYDGWAQMCGL 117
Query: 167 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRA 225
PL+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++
Sbjct: 118 PLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQE 177
Query: 226 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284
IR V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V
Sbjct: 178 IRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKV---- 233
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343
D + ADES + ++++ AD+INIKL K G+ GA +I + A G+ M
Sbjct: 234 TDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECM 293
Query: 344 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
+G M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 294 VGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-115
Identities = 82/360 (22%), Positives = 163/360 (45%), Gaps = 14/360 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ + + +PL F A + ++++A+ + L NG G+G AP +T + Q
Sbjct: 5 IIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGM 64
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
E V+ S + + + A + A+++A D +AK +
Sbjct: 65 QYIIREIFAPVILGSDLSDYKQTLELAFKKVMFNSAA-----KMAIDLAYHDLLAKEQDI 119
Query: 167 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI 226
+ +L G +N+I TD++I + AE + + FT +K+K G + DI++L+A+
Sbjct: 120 SVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKAL 179
Query: 227 R-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285
+ F DAN+G+ + + +E++ + + + EQPV D + + ++
Sbjct: 180 DNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEITK--- 236
Query: 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 344
+ V ADES D ++++ ++INIKLAK G+L A +I ++ ++G++ M+
Sbjct: 237 -FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMV 295
Query: 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVS-GAVYKFTNARGHG 403
G M+E+ + + DLD +++D D + + N +G G
Sbjct: 296 GCMMESPAGILATASFALAED-ITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFG 354
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-114
Identities = 112/360 (31%), Positives = 175/360 (48%), Gaps = 15/360 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+++ R + L FTIA ++ ++ + IE G VG+GE +T E
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGT 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+ + + + + V+ + A +AA+++A D + + +P
Sbjct: 63 LETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAA-----KAAIDIACYDLMGQKAQLP 117
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
L++L GG N + TDIT+ I P A+ A + K GF TLK+KVG ++ DI ++AIR
Sbjct: 118 LYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIR 177
Query: 228 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
AV D LDAN+ + P++AV+ ++ L + + L EQPV R D EGL +V
Sbjct: 178 EAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVKRRDLEGLKYV----TS 231
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
+ ++ ADESC D ++VK DVINIKL K G+ AL+I ++ +G+ MIG
Sbjct: 232 QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIG 291
Query: 346 GMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG-AVYKFTNARGHG 403
M ET + + A HL+A DLD L PV G + + + A G G
Sbjct: 292 CMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLG 351
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 2e-98
Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 27/357 (7%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + L FT+AT +V + IE G G+GEA +P E ++ ++
Sbjct: 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEIE-YEGVTGYGEA-SMPPYLGETVES-VM 58
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ + + S L + V L P A +AAV++AL D V K + P +
Sbjct: 59 NFLKKVNLEQFSDPFQLEDILSYVDSLSPKDTAA-----KAAVDIALHDLVGKLLGAPWY 113
Query: 170 RLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA 228
+++G T +T TI I +P K F LK+K+G++ D E++ IR+
Sbjct: 114 KIWGLNKEKTPSTTFTIGIDTPDVVRAKT-KECAGLFNILKVKLGRD--NDKEMIETIRS 170
Query: 229 VHPDSSFILDANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 287
D +DAN+G+K ++ A++++ L E G+ + EQP+ ++ + + V +
Sbjct: 171 -VTDLPIAVDANQGWKDRQYALDMIHWLKEKGIV--MIEQPMPKEQLDDIAWV----TQQ 223
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 346
+ V ADES + L DV + INIKL K G+ A +++ + A G+ +M+G
Sbjct: 224 SPLPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGC 281
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
M ET A+ A S F DLD LL+S D G EV + G G
Sbjct: 282 MTETSCAISAASQFSPA---VDFADLDGNLLISNDRF-KGVEVVNGKITLNDLPGIG 334
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 297 bits (761), Expect = 3e-98
Identities = 66/378 (17%), Positives = 128/378 (33%), Gaps = 32/378 (8%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R ++ P + L +R++ +G G GE ++P ++ + ++
Sbjct: 6 ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEEQIGR 64
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKV------------------RAA 151
+ L+ + L G + + R A
Sbjct: 65 ELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFA 124
Query: 152 VEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 211
+EMAL+D ++ F I + I + A E +G+ LKLK
Sbjct: 125 LEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLK 184
Query: 212 VGK-NLKEDIEVLRAIRAVHP--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
+G + ++ +L IR +DAN + P A + L++L + + EQP
Sbjct: 185 IGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHLH--SIEQP 242
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV--KGNLADVINIKLAKV-GV 325
+ + W + + +++A DE L ++ I +K + + G
Sbjct: 243 IRQHQWSEMAAL----CANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGF 298
Query: 326 LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLD 385
A + IE+ R G+ I +E+ L + +A L T L + +
Sbjct: 299 HYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-S 357
Query: 386 GYEVSGAVYKFTNARGHG 403
V G + + H
Sbjct: 358 NLAVDGGLLGVSEGHHHH 375
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 294 bits (756), Expect = 4e-98
Identities = 93/337 (27%), Positives = 146/337 (43%), Gaps = 31/337 (9%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ + PL PF IA + V + +E G G GE P E + M
Sbjct: 5 RTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVM 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
+++ P + G + +LP A R A++ AL D A+ L
Sbjct: 63 A------QIMSVVPQLEKGLTREELQKILP-AGAA-----RNALDCALWDLAARRQQQSL 110
Query: 169 WRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
L G + T+ T T+ I +P + A AS + G LK+K+ + E + AIR
Sbjct: 111 ADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIR 168
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 287
PD++ I+DANE ++ + + L ++GV + EQP+ D L + H
Sbjct: 169 TAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH----- 221
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 346
+ + ADESC + ++K + +++NIKL K G+ AL + RA G +LM+G
Sbjct: 222 -PLPICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGC 278
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 383
M+ T A+ A L F DLD P L+ D
Sbjct: 279 MLCTSRAISAALPLVPQ---VSFADLDGPTWLAVDVE 312
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 293 bits (751), Expect = 8e-97
Identities = 75/362 (20%), Positives = 146/362 (40%), Gaps = 18/362 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ P ++P P A+ + E+V +R+ +G VG EAP P E Q
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGI 62
Query: 108 MVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+ + L +A G+ A +AA++MA+ DA+ +S+ +
Sbjct: 63 VAVIEQYFAPALIGLTLTEREVAHTRMART-VGNPTA-----KAAIDMAMWDALGQSLRL 116
Query: 167 PLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLKVGKN-LKEDIEVLR 224
+ + GG ++ + + P + A + R+ G T K+KVG+ ++ D V+R
Sbjct: 117 SVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVR 176
Query: 225 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
A+R +D N G+ E++ + ++ ++ + E+ DD +
Sbjct: 177 ALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLL--FAEELCPADDVLSRRRL--- 231
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 343
+ + ADES + DV + V G A I+IK A+ G G+ + + GL+++
Sbjct: 232 -VGQLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMV 290
Query: 344 IGGMVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 401
+G ++ ++ +L L +S+D + ++S G
Sbjct: 291 MGNQIDGQIGTACTVSFGTAFERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPG 350
Query: 402 HG 403
G
Sbjct: 351 LG 352
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 5e-96
Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 21/362 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE A LP T E
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 81
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
+A++ E +L + + + + + G++ A +AAVE+A+ DA AK
Sbjct: 82 SAILIIKEQLLPLLAQRKIRKPEEIQELFS-WIQGNEMA-----KAAVELAVWDAFAKME 135
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
L ++ G +I ++I + E +L ++Y QG+ +KLK+ N +DI+ +
Sbjct: 136 KRSLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFV 193
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
A+R P S + DAN Y ++ + L++L + + + EQP D+ +
Sbjct: 194 EAVRKSFPKLSLMADANSAYNREDFLL-LKELDQYDL--EMIEQPFGTKDFVDHAWL--- 247
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + + DE+ RS+ DV++ IN+KLA+V G+ AL+I E + + +
Sbjct: 248 -QKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILV 306
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARG 401
GGM+E + L+A D+ + +ED V +E++ K G
Sbjct: 307 WCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEG 366
Query: 402 HG 403
G
Sbjct: 367 IG 368
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 1e-94
Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 16/339 (4%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++
Sbjct: 5 AIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFH 64
Query: 110 KASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
L M + + ++ + G A +AA+++A D + K ++ P+
Sbjct: 65 TLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTA-----KAAIDIACFDIMGKKLNQPV 119
Query: 169 WRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
++L GG + I P AE A+ ++G+ + K+KVG N+KED++ + A+R
Sbjct: 120 YQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVR 179
Query: 228 -AVHPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285
V D + +D N+G+K + L L + + EQPV DD + + H+ +
Sbjct: 180 ERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNID--WIEQPVIADDIDAMAHI----R 233
Query: 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMI 344
K + + DE +S ++++I+K AD +NIKL K G+ A+++ +G+ +
Sbjct: 234 SKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQV 293
Query: 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 383
G MVE+ +A H++ ++L PL ++D
Sbjct: 294 GSMVESSVASSAGFHVAFSKKIITSVELTGPLKFTKDIG 332
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 2e-94
Identities = 75/356 (21%), Positives = 126/356 (35%), Gaps = 35/356 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R + R PL P T A + +R+E G VG+GE LP +E +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADI- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ ++ P + + LP QF A ++ + P+
Sbjct: 63 ------ALCQQLPGHLTPEIMATIPEALPAAQFG-----FATAWQSVGRLPYRVRPWPIC 111
Query: 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR- 227
L G S A E + ++G TT K KVG + +E+ +L+A+
Sbjct: 112 ALLG---------------SGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLA 156
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKD 286
A+ P + LDAN + A L G + + EQP+ D W+ L ++
Sbjct: 157 ALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSLA----Q 212
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346
++A DES S +V++ V IK A G +L ++ L+
Sbjct: 213 TVTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSS 272
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 402
+E +A HL + P+L +++ + GH
Sbjct: 273 ALEGAIARTAIFHLLETWQPCHALGFGVDRWR-SAPLLTTLTAYERLWERLDQEGH 327
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 1e-93
Identities = 86/371 (23%), Positives = 155/371 (41%), Gaps = 22/371 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE R L +PL F + + + +R+ G G GE LP E
Sbjct: 3 IEAAELRILELPLKFRFETSFGVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYREETVA 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
A E + ++ +A G+ A +A +EMA D AK++
Sbjct: 62 GARYLLEEVFLPRVLGRDLPNPEALREALAPF-RGNPMA-----KAVLEMAFFDLWAKAL 115
Query: 165 SMPLWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
PLW++ GGV + +++ I S + + ++ ++G+ +KLK+ D EVL
Sbjct: 116 GRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIKPG--WDYEVL 173
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+A+R P+++ DAN Y + L++L E+ + EQP+ DD +
Sbjct: 174 KAVREAFPEATLTADANSAYSLANLAQ-LKRLDELRL--DYIEQPLAYDDLLDHAKL--- 227
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + + DES + +K ++ V N+K A++ G +L + + ++G+ L
Sbjct: 228 -QRELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPL 286
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARG 401
+GGM+E + HL+ G K D+ + ED V + E + G
Sbjct: 287 WMGGMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVG 346
Query: 402 HGGFLHWDNIA 412
G L +
Sbjct: 347 IGVHLKLPFVE 357
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 1e-90
Identities = 79/371 (21%), Positives = 139/371 (37%), Gaps = 21/371 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE P E
Sbjct: 22 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 81
Query: 106 TAM-VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
T + +L V + + GH +AA+E A+ D AK
Sbjct: 82 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEV-KGHWMG-----KAALETAIWDLYAKRQ 135
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
L FG I I++ I + ++G+ +KLK+ D+E +
Sbjct: 136 QKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPV 193
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
IR P+ ++DAN Y + + L++L + + EQP DD+ +
Sbjct: 194 ALIRQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQLA--MIEQPFAADDFLDHAQL--- 247
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + + DE+ RSL D + + IN+K+ +V G+ AL+I + + L +
Sbjct: 248 -QRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLV 306
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARG 401
+GGM E+ + ++ D+ ED + + + + G
Sbjct: 307 WLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLG 366
Query: 402 HGGFLHWDNIA 412
G L N+
Sbjct: 367 IGVTLSQTNLL 377
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 3e-90
Identities = 86/378 (22%), Positives = 149/378 (39%), Gaps = 27/378 (7%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+Q L++PL P A + + + + +++ ++G GW E L P T E
Sbjct: 3 LQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTD 62
Query: 106 TAMVKASE-------ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALID 158
TA V + G++ + AA+EMA+ D
Sbjct: 63 TAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMS-----VAAIEMAVWD 117
Query: 159 AVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLK 217
A PL L GG + + T+ + + + +QGF +KLK+
Sbjct: 118 WYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAPG-- 175
Query: 218 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277
D ++A+R +PD + DAN Y+P++A VL +L + EQP+ DDW L
Sbjct: 176 RDRAAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDLQ--FIEQPLPEDDWFDL 232
Query: 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVR 336
+ + V DES RS+ ++K + A V+N+K ++ G L ++V
Sbjct: 233 AKL----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAG 288
Query: 337 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYE-VSGAVY 394
+G+ +GGM ET + +A DL + +D + + V V
Sbjct: 289 EAGMAAWVGGMYETGVGRVHGLIAAALPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVI 348
Query: 395 KFTNARGHGGFLHWDNIA 412
+ G ++ D +
Sbjct: 349 QVPQCAGVADWVDRDAVR 366
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 272 bits (698), Expect = 1e-88
Identities = 78/360 (21%), Positives = 135/360 (37%), Gaps = 17/360 (4%)
Query: 50 RAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ L +P+++ R+ E V +R+ G G+GEA T + +
Sbjct: 12 AMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYA 71
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
++ ++ A + A +AA++ AL+D + ++P+
Sbjct: 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEA-----KAALDSALLDLAGRISNLPV 126
Query: 169 WRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI 226
W L GG +TI +I L + R G +KLK G ++ DI L I
Sbjct: 127 WALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELI 186
Query: 227 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
P+ +D N+G + EAV + + + EQPV +E + + +
Sbjct: 187 ARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPD--FIEQPVRAHHFELMARL----RG 240
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
V + ADES +D+ + + D ++IK+ K G+ A + + A GL G
Sbjct: 241 LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGG 300
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFI--DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
M E LA H+ A L+ED + + V + G G
Sbjct: 301 DMFEAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLG 360
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 271 bits (694), Expect = 6e-88
Identities = 90/364 (24%), Positives = 159/364 (43%), Gaps = 19/364 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AEDQQT 106
V++ E+ ++VP I P ++ + + V +R+ S+G G GEA + ++ +
Sbjct: 7 VEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPE 66
Query: 107 AMVKASEAC--EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
A+ A +LK PA L ++ + G + G+ FA ++A+E AL+DA K++
Sbjct: 67 AISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFA-----KSAIETALLDAQGKAL 121
Query: 165 SMPLWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIE 221
+P+ L GG + + T+ A+ AE + KLK+G + L D+
Sbjct: 122 GLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGARELATDLR 181
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
RAI A+ +S +D N+ + + +L MGV L EQPV D L +
Sbjct: 182 HTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPVSAHDNAALVRL 239
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 339
+ ++ ADE+ + D ++ + +K+AK G L + V +A+G
Sbjct: 240 ----SQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAG 295
Query: 340 LNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 399
+ L G M+E + + H + L ++ PLLL +D V +
Sbjct: 296 IGLYGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQT 355
Query: 400 RGHG 403
G G
Sbjct: 356 PGLG 359
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 267 bits (684), Expect = 2e-86
Identities = 83/365 (22%), Positives = 153/365 (41%), Gaps = 20/365 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ E +++P I P +A + V IR+ ++G G GE+ + + ++
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 108 MVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
+K +L A + + + + G+ FA ++ +E AL+DA K +
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFA-----KSGIESALLDAQGKRL 122
Query: 165 SMPLWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIE 221
+P+ L GG V + + T+ A+ AE + KLK+G + D+
Sbjct: 123 GLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLA 182
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+ AI+ A+ +S +D N+ + A+ L G+ L EQP+ R++ G+ +
Sbjct: 183 HVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGID--LIEQPISRNNRAGMVRL 240
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 339
+ ADES ++D + + A V +K+AK G L + A+G
Sbjct: 241 ----NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAG 296
Query: 340 LNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398
+ L G M+E + + H L + +L PLLL+ED + + +
Sbjct: 297 IGLYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSK 356
Query: 399 ARGHG 403
A G G
Sbjct: 357 APGLG 361
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 8e-85
Identities = 84/363 (23%), Positives = 161/363 (44%), Gaps = 21/363 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT--AEDQQTA 107
++VP P ++ + + + V ++++ + G VG GE + T +E +T
Sbjct: 5 AISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAETI 63
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
V +L A L ++ + G+ A +AA+++AL D A+++++
Sbjct: 64 KVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSA-----KAAIDIALHDLKARALNL 118
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
+ L GG + +I T+ A + K+K+G + +D+E +
Sbjct: 119 SIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHI 178
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+I AV +S +D N+G+ Q A + +L E GV L EQPV R ++ L +
Sbjct: 179 RSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRL-- 234
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 341
++ GV++ ADES SL ++ + + D ++KL + G+ L++ V A+G++
Sbjct: 235 --TEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGIS 292
Query: 342 LMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR 400
G M+++ + A H+ A L + +L P +L + E+
Sbjct: 293 SYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGS 352
Query: 401 GHG 403
G G
Sbjct: 353 GLG 355
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 4e-84
Identities = 84/362 (23%), Positives = 149/362 (41%), Gaps = 22/362 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ E R + +PL+APF + E + +R G GWGE + P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYND 61
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
A L + + V ++A GH+ A + A+EMA++DA ++
Sbjct: 62 GAEHVLRHYLIPALLAAEDITAAKVTPLLA-KFKGHRMA-----KGALEMAVLDAELRAH 115
Query: 165 SMPLWRLFGGVSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
G V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +
Sbjct: 116 ERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPV 173
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
RA+R D +DAN Y +A + L +L G+ L EQP+ +D G +
Sbjct: 174 RAVRERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGLL--LIEQPLEEEDVLGHAEL-- 228
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 341
+ + DES S +K ++NIK +V G L A + +V A G+
Sbjct: 229 --ARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIP 286
Query: 342 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARG 401
+ GGM+ET L L++ D + + + + +SG G
Sbjct: 287 VWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPG 346
Query: 402 HG 403
G
Sbjct: 347 LG 348
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 1e-83
Identities = 96/365 (26%), Positives = 161/365 (44%), Gaps = 20/365 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q+ E+R L+VPLI P AT+ + + + + L NG +G+GE P P E +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 106 TAMVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
T VL L + + ++ ++A +AAV++A+ DA A+S+
Sbjct: 68 TMKALVDGYLAPVLIGRAVSELAGIMADLERVVARARYA-----KAAVDVAMHDAWARSL 122
Query: 165 SMPLWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGK-NLKEDIE 221
++P+ L GG V + + + ++ AE+ + + G + KLK+G + ED
Sbjct: 123 NVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTR 182
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+ + V S +D N + + A+ L L E GV LFEQP DD E L +
Sbjct: 183 RVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLREI 240
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 339
+ + VSV ADES + + +VK ADVI +K K G+L + +I + A G
Sbjct: 241 T----RRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGG 296
Query: 340 LNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398
L +E + + +A + +L P LL + ++ +E
Sbjct: 297 LACHGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQ 356
Query: 399 ARGHG 403
G G
Sbjct: 357 GPGLG 361
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 9e-83
Identities = 88/359 (24%), Positives = 150/359 (41%), Gaps = 28/359 (7%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQT-- 106
+ E P++ P+ + + L +++ V +++ G VG +A E Q +
Sbjct: 7 KVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSIT 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+M+ A +VL + + G + L + A +A V+ AL D V K +
Sbjct: 67 SMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA-----KATVDFALHDLVGKRFGV 121
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 225
P+++L GG I + + P AE A ++GF +KLK G LK DI ++
Sbjct: 122 PVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAE 181
Query: 226 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284
+R AV D +D N + +A+ + L + ++ EQP+ D +G+ +
Sbjct: 182 VRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLS--KIEQPLPAWDLDGMARL---- 235
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343
+ K + ADES + L D+ I+ AD + IK K G+L A + + R + L ++
Sbjct: 236 RGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVI 295
Query: 344 IGGMVETRLAMGFAGHLSAGL-----------GCFKFIDLDTPLLLSEDPVLDGYEVSG 391
G MV + L A HL A G D + D L+ G
Sbjct: 296 CGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEG 354
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 4e-81
Identities = 86/364 (23%), Positives = 161/364 (44%), Gaps = 23/364 (6%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQT- 106
E ++VP P ++ + + Q V +R+ S G VG GE + P +AE +T
Sbjct: 5 AIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETI 63
Query: 107 -AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVS 165
+V+ A +L + +A + G+ A +AAVEMAL+D A+++
Sbjct: 64 KIIVERYLAPHLLGTDA-FNVSGALQTMARAVTGNASA-----KAAVEMALLDLKARALG 117
Query: 166 MPLWRLFGG-VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEV 222
+ + L GG + + I T+ ++ K+K+G ++ ++D+
Sbjct: 118 VSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIH 177
Query: 223 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281
+ A+ ++ + +D N+ + Q A + +L +GV L EQPV R++ + L +
Sbjct: 178 MEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVGRENTQALRRL- 234
Query: 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 340
D V++ ADES +L + + DV ++KL + GV +I V ASG+
Sbjct: 235 ---SDNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGI 291
Query: 341 NLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 399
G M+++ + A L + + F +L P +L++ + E+ +
Sbjct: 292 ASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTG 351
Query: 400 RGHG 403
GHG
Sbjct: 352 VGHG 355
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 9e-81
Identities = 69/378 (18%), Positives = 140/378 (37%), Gaps = 37/378 (9%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + +P+ PF I++ ++ + I G+GE+ P E +
Sbjct: 9 IDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYLGETLE 67
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
T V ++ +++ ++ + G+ FA R VE A D +AK
Sbjct: 68 TTKVILKNHLLPMILGKEPLSIEEFNHLIKNGIRGNHFA-----RCGVENAYWDLIAKKN 122
Query: 165 SMPLWRLFGG-------------VSNTITTDITIPIVSPA---EAAELASKYRKQGFTTL 208
+ L + +N I + + I + ++G+ +
Sbjct: 123 KISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRI 182
Query: 209 KLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
K+K+ D+E L+ R AV DAN ++ + E + + + EQ
Sbjct: 183 KIKIKPG--WDVEPLQETRRAVGDHFPLWTDANSSFELDQW-ETFKAMDAAKC--LFHEQ 237
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVL 326
P+H + L + ++ + DES S + + K ++++ NIK+ +V G+L
Sbjct: 238 PLHYEALLDLKEL----GERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLL 293
Query: 327 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLD 385
A++I ++ +G+ L G M E+ L F L++ G D+ + L
Sbjct: 294 EAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGKGNDLV 353
Query: 386 GYEVSGAVYKFTNARGHG 403
++ + G
Sbjct: 354 ENTMTDGKIYVPDEPGAS 371
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 8e-80
Identities = 86/371 (23%), Positives = 145/371 (39%), Gaps = 22/371 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
++ AE +PL F + + V + I G G E P E
Sbjct: 10 IEAAEIVVARLPLKFRFETSFGVQTH-KVVPLLILHGEGVQGVAEGTMEARPMYREETIA 68
Query: 106 TAMVKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
A+ + +V + G++ A RA VEMA D A+++
Sbjct: 69 GALDLLRGTFLPAILGQTFANPEAVSDALGSY-RGNRMA-----RAMVEMAAWDLWARTL 122
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
+PL L GG + +++ I + +A +L ++ +QG+ +KLK+ D++ +
Sbjct: 123 GVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPV 180
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
RA R PD +DAN Y +A L +L E +T EQP+ DD +
Sbjct: 181 RATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLT--YIEQPLAWDDLVDHAEL--- 234
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + DES S D +K + VIN+K+A+V G + + +V ++ G +
Sbjct: 235 -ARRIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPV 293
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARG 401
GGM+E+ + HLS D D + + E + G
Sbjct: 294 WCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPG 353
Query: 402 HGGFLHWDNIA 412
G L + +A
Sbjct: 354 TGVTLDREFLA 364
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-78
Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 21/344 (6%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R +++PL P+ ++ + + ++ +++E G GWGE H
Sbjct: 7 RITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+ E + L V + LPGH +A ++ ++MA D ++ +
Sbjct: 67 IRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYA-----KSPIDMACWDIAGQAAGL 121
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 225
P+ L GG ++ S E + +YR++G+ +K+G +++ DI +R
Sbjct: 122 PIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRD 181
Query: 226 IR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284
+ P + D N G+ Q+A+ V+ ++ V+FEQP + + +
Sbjct: 182 VEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH---VMFEQPGE--TLDDIAAI---- 232
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343
+ V+ DE +L D ++ + LA+V IKL +V G+ A + ++ G+++
Sbjct: 233 RPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMF 292
Query: 344 IGGMVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDG 386
+ + LA A HL+A + +L+ D
Sbjct: 293 VMATGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 2e-78
Identities = 80/351 (22%), Positives = 140/351 (39%), Gaps = 18/351 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQT 106
V+R + P+ + V+ V + + ++G VGWGEA T +
Sbjct: 8 VERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAA 67
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
++ +P + + + +L GH A +AAVEMAL+D + K+ +
Sbjct: 68 FSALDIYLRPLILGAPIKRVRELMARMDKMLVGHGEA-----KAAVEMALLDILGKATGL 122
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLR 224
+ L GG V + I +I E G T K+K G E++ +L
Sbjct: 123 SVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILE 182
Query: 225 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+R LD N+ P A+++L + T EQPV R + + +
Sbjct: 183 TMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPT--FIEQPVPRRHLDAMAGFA-- 238
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ ADESC D+ ++V+ AD I++K+ K G++ A ++ + +GL
Sbjct: 239 --AALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPG 296
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSG 391
G + E +A+ L A + P +L+ED + + S
Sbjct: 297 YGGTLWEGGIALAAGTQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSA 347
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 3e-78
Identities = 70/363 (19%), Positives = 157/363 (43%), Gaps = 24/363 (6%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++P++ P+ IA+ + + ++I +G +GWGE + AE
Sbjct: 7 EIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGA 66
Query: 109 VKASEAC-EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+ A E L + A+ L + + LL GH +A ++A+++A+ D K + +P
Sbjct: 67 LAALEVLASGLAGAEALPL-PLHTRMDSLLCGHNYA-----KSALDIAVHDLWGKRLGVP 120
Query: 168 LWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRA 225
+ L GG +++++++ ++ ++ P EAA A + +++G++ L++K+G ++ DIE +R
Sbjct: 121 VHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRK 180
Query: 226 IR--AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+ + D N G+ ++A+ + ++ + EQP + +E L +
Sbjct: 181 VWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIP---FVMEQPCN--SFEDLEAI--- 232
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ ++ DE SL+ V +L D +K++++ G+ + A L
Sbjct: 233 -RPLCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPH 291
Query: 343 MIGGMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR 400
+ H+++ + + L P + +G + G +
Sbjct: 292 TCDDAWGGDIVSAACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGP 351
Query: 401 GHG 403
G G
Sbjct: 352 GLG 354
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 1e-77
Identities = 71/363 (19%), Positives = 142/363 (39%), Gaps = 23/363 (6%)
Query: 50 RAENRPLNVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-TA 107
++P+ P+TIA+S + ++ ++I +G GWGE + A A
Sbjct: 27 EIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGA 86
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+E L + + + + GLL GH +A +AA+++A D + K +
Sbjct: 87 RAALAEMAPGLIGANPLQPLVLRRRMDGLLCGHNYA-----KAAIDIAAYDLMGKHYGVR 141
Query: 168 LWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRA 225
+ L GG + + + I P E A +A++ +GF L++K+G ++ DIE +R
Sbjct: 142 VADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRK 201
Query: 226 IRA--VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+ + +D N ++A+ + + E+ + EQP + E + +
Sbjct: 202 VWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP---FVLEQPC--NTLEEIAAI--- 253
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + + DES L V + L D +KL ++ G+ ++ A L
Sbjct: 254 -RGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPH 312
Query: 343 MIGGMVETRLAMGFAGHLSAGLG--CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR 400
+ H+ A + + + + P + +G ++G
Sbjct: 313 SCDDAWGGDIIAAACTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGP 372
Query: 401 GHG 403
G G
Sbjct: 373 GLG 375
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 3e-76
Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 23/345 (6%)
Query: 50 RAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ-T 106
R L++PL P+ ++ + D++++ +RI+ G GWGE H
Sbjct: 7 RLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPG 66
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+ L +L V V+ LPGH + ++ ++MA D + + +
Sbjct: 67 LRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPGHSYV-----KSPIDMACWDILGQVAGL 121
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLR 224
PLW+L GG + + + +I +P + L ++ QG+ T K+G + +DI +
Sbjct: 122 PLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIE 181
Query: 225 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
AI + D N + P AVEVL + EQP D HV
Sbjct: 182 AISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPCQTLD--QCAHV--- 232
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ + DE D + + IK +V G+ A +I + + G +
Sbjct: 233 -ARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQM 291
Query: 343 MIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 386
I + T LA A HL+A + L++DP+
Sbjct: 292 HIEDVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQ 336
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 3e-75
Identities = 62/347 (17%), Positives = 114/347 (32%), Gaps = 37/347 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQ 105
+ + P + L + + I + G +GE E
Sbjct: 4 LTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIA 63
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVS 165
+ + E + + +V L A RA + MAL
Sbjct: 64 SVKHVIEQWFEDNRNKSFETYEAALKLVDS-LENTPAA-----RATIVMALYQMFHV--- 114
Query: 166 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 225
+P + + G T +S + + T +KLK + + +R
Sbjct: 115 LPSFSVAYG--------ATASGLSNKQLES----LKATKPTRIKLKWT---PQIMHQIRV 159
Query: 226 IRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285
+R + ++DANE Q+ + L+ L V E+P D L V+
Sbjct: 160 LRELDFHFQLVIDANESLDRQDFTQ-LQLLAREQVL--YIEEPF--KDISMLDEVAD--- 211
Query: 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 344
+A DE SL D+ +++ V+ +K ++G + I+ +++ G ++I
Sbjct: 212 -GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVI 270
Query: 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 391
GGM E L+ F L A G + +D V +
Sbjct: 271 GGMYEYGLSRYFTAML-ARKGDYPGDVTPAGYYFEQDVVAHSGILKE 316
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 4e-73
Identities = 65/354 (18%), Positives = 133/354 (37%), Gaps = 25/354 (7%)
Query: 50 RAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
R + ++P+ + + + IE G GWGE+
Sbjct: 7 RIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGG 66
Query: 108 MVKASEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
A E + ++ + L GH+ A RAA+++A D A++ +
Sbjct: 67 TRAALELLAPAILGMDPRQHDRIWDRMRDTLKGHRDA-----RAALDIACWDIAAQAAGL 121
Query: 167 PLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL-----KEDI 220
PL + GG V+ + +I +P +++R QGF +K+G + D
Sbjct: 122 PLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDA 181
Query: 221 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279
E + A P ++ DAN G + A+ +L L ++ E P W
Sbjct: 182 ERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGL--DIVLEAPC--ASWAETKS 237
Query: 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 338
+ + + + + DE ++ D+ ++ +L D + +K++K G+ L + A+
Sbjct: 238 L----RARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAA 293
Query: 339 GLNLMIGGMVETRLAMGFAGHLSAGLGCFK-FIDLDTPLLLSEDPVLDGYEVSG 391
G+ + + V ++++ HL+ LDT + + + +
Sbjct: 294 GMVMSVQDTVGSQISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRD 347
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 5e-72
Identities = 62/345 (17%), Positives = 128/345 (37%), Gaps = 20/345 (5%)
Query: 54 RPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+++P + A + +RI G GWGE+ +
Sbjct: 12 FQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAG 71
Query: 112 -SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWR 170
+ L + + + L GH+ A + A+++A D KSV +P+
Sbjct: 72 IATMAPSLIGLDPRRVDRINDAMDDALLGHEDA-----KTAIDVACWDIFGKSVGLPVCE 126
Query: 171 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 228
L GG + + +I + P + +KYR +G+ +K+ D + + A
Sbjct: 127 LLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALAN 186
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
PD FI+DAN + A+ +L L E P W + + K
Sbjct: 187 QQPDEFFIVDANGKLSVETALRLLRLLPHGL--DFALEAPCA--TWRECISL----RRKT 238
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 347
+ + DE + + KI+ + A+ I++K++K G+ ++ A+G ++ +
Sbjct: 239 DIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQET 298
Query: 348 VETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 391
+ +A HL+ + L+ +++ +++
Sbjct: 299 CGSDIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQD 343
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 8e-72
Identities = 61/345 (17%), Positives = 126/345 (36%), Gaps = 21/345 (6%)
Query: 54 RPLNVPLIAPF--TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
++P + A + + + I+ G G GE +
Sbjct: 11 YKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAF 70
Query: 112 SEA-CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWR 170
+ L + + ++ L+ GH +A +A + A D + ++ P+W
Sbjct: 71 ARLAAPQLLGQDPRQVARMERLMDHLVQGHGYA-----KAPFDAAFWDILGQATGQPVWM 125
Query: 171 LFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-A 228
L GG + + P S AE +++R G+ ++KVG + + DI+ +RA
Sbjct: 126 LLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPL 185
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
+ P + DAN+G++ A+ + ++ + EQP +E V +
Sbjct: 186 LEPGEKAMADANQGWRVDNAIRLARATRDLD---YILEQPCR--SYEECQQV----RRVA 236
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 347
+ DE L ++IV A++ +K++ + G+ A + + + + ++
Sbjct: 237 DQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDS 296
Query: 348 VETRLAMGFAGHLSAGLGCFKFID-LDTPLLLSEDPVLDGYEVSG 391
+A H +A I+ D + L G V
Sbjct: 297 WGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQ 341
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 3e-69
Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 27/344 (7%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
RPL +PL P+ + + I IE +G VG GE V P T A++
Sbjct: 12 RPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTGT---AAILY--R 66
Query: 114 ACEVLK-ESP--------AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
+ L SP + G A ++ + ++MA+ D K
Sbjct: 67 LAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQI-----FSGIDMAMWDLQGKLA 121
Query: 165 SMPLWRLFGG-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL 223
+P+ +L GG + + + E A A+ QG LKVG+ K D+E+
Sbjct: 122 GLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEIT 181
Query: 224 RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
A+R D+ LDANEG+ +A+ + KL + EQP + HV
Sbjct: 182 AAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYD--IEFIEQPTVSWSIPAMAHVR-- 237
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+K G+ + AD++ +L DV +I + AD+I I ++ G+ ++ V A+GL +
Sbjct: 238 --EKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKI 295
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG 386
I T + H+ + + L+ ED V
Sbjct: 296 CIHSSFTTGITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSP 339
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 5e-67
Identities = 64/338 (18%), Positives = 108/338 (31%), Gaps = 42/338 (12%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
+AG Q S V V AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPS---VAFGVSCALAELTDTLPQAAN 105
Query: 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR 227
+R + P + + G K++VG D V+ +
Sbjct: 106 YRA-----------APLCNGDPDDLILKLA--DMPGEKVAKVRVGLYEAVRDGMVVNLLL 152
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKD 286
PD LDAN + P + + + + + E+P D
Sbjct: 153 EAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRA------FAR 206
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 345
+ G+++A DES R D +G + IK G + E ++ A GL +I
Sbjct: 207 ETGIAIAWDESLREPDFAFVAEEG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVIS 264
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 383
+E+ L + ++A L LDT L+ V
Sbjct: 265 SSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV 302
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 4e-66
Identities = 66/357 (18%), Positives = 118/357 (33%), Gaps = 34/357 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + +P F ++V ++I G G GE H+ +
Sbjct: 5 DLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDL 56
Query: 110 KASEACEVLKESPA------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKS 163
K +L ++P L F F R ++ AL D AK
Sbjct: 57 KQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEKGSFI-----RNGIDNALHDLCAKY 111
Query: 164 VSMPLWRLFGG-VSNTITTDITI----PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKE 218
+ + + GG V I I ++ + +QGF +L VGKNL
Sbjct: 112 LDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDA 171
Query: 219 DIEVLRAIR-AVHPDSSF-ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276
D E L ++ D + ++A +++L + + + E P R+D++G
Sbjct: 172 DEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDG 231
Query: 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 335
L + E S ++++K + D+ NI + G+ A +
Sbjct: 232 LYQLRL------KTDYPISEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAA 285
Query: 336 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSG 391
+ ++++G E + HL L D P L D V +
Sbjct: 286 EVASKDVVLGTTQELSVGTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKD 342
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-59
Identities = 51/360 (14%), Positives = 112/360 (31%), Gaps = 54/360 (15%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ P + + AT+ + E V +++E ++G G+ + P + + +
Sbjct: 3 KISYSPYTLKPVQSLNAATAATAR-EGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL- 60
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ + + + ++ +A DA+ + ++
Sbjct: 61 ---SDLRMGRMTTQ------------------------IEQSIWLARRDALLRKEKKHVF 93
Query: 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
I + + + L + +G+ T+K+K+G++L+++ ++L I A
Sbjct: 94 DG----GEKIKNNYLLSHFQDLKPGFLD-GLKNEGYNTVKVKMGRDLQKEADMLTHIAA- 147
Query: 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKF 288
LD N Q + + L + + E P D + +
Sbjct: 148 -SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDF-HAW------GEARK 199
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMV 348
+A D + K + DVI IK AK + + + L L + +
Sbjct: 200 LAKIALDNQYDKVPWGK--IASAPFDVIVIKPAK---TDVDKAVAQCQKWNLKLAVTSYM 254
Query: 349 ETRLAMGFAGHLSAGL-----GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
+ + + A ++ L T L D G G G
Sbjct: 255 DHPVGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVG 314
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 2e-58
Identities = 76/364 (20%), Positives = 134/364 (36%), Gaps = 23/364 (6%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+ R D V A+ + +G VG G L + + Q+ V E
Sbjct: 11 TRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHE 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
LK + A+AL V G+Q A L AV++AL D AK +PL L G
Sbjct: 71 VWPSLKGNRAIAL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLG 127
Query: 174 GVSNTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-A 228
N + + + + L S G++ K+KVG + D+ L ++
Sbjct: 128 SRRNRVKAYASGLDFH-LDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTC 186
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
V S ++D NE + +EA+ L + E G + E P+ R D +GL + +
Sbjct: 187 VPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTL----RHAV 242
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMV 348
+ L + +++ + AD++N+ V + I + G+ + IG
Sbjct: 243 TWTQINSGEYLDLQGKRLLLEAHAADILNV---HGQVTDVMRIGWLAAELGIPISIGNT- 298
Query: 349 ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHW 408
+ H++ L ++++ + V E+ + GHG L
Sbjct: 299 ----FLEAGVHMAVALPEVEWLEYSFQNF--DHLVEQPIEIRDGYAYAPDRPGHGLVLSE 352
Query: 409 DNIA 412
Sbjct: 353 KARG 356
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-58
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 14/244 (5%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 209
E A A + W V +T+ + T+P V P EAA + +
Sbjct: 43 GPRECARWWAACYEAAELGW--PAPVRDTVPVNATVPAVGPEEAARIVASSGCTTAKVKV 100
Query: 210 LKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
+ G++ D+ + A+R A+ P +D N + AV ++ L + EQP
Sbjct: 101 AERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFELE--YVEQP 158
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA 328
+ L V + + V +AADES R +D ++ ADV+ +K+ +G G
Sbjct: 159 C--ATVDELAEV----RRRVSVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLG--GV 210
Query: 329 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGY 387
+ + GL +++ VET + + L+A L + L T LL D D
Sbjct: 211 RAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPELPYACGLATLRLLHADVCDDPL 270
Query: 388 EVSG 391
Sbjct: 271 LPVH 274
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 2e-57
Identities = 58/370 (15%), Positives = 126/370 (34%), Gaps = 49/370 (13%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQT 106
+ FT + E++++ + L +G V G+ + P A+D
Sbjct: 35 TGSTVTEGFTQVRQK---GESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIP 91
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
+ K E L + + +R + A++DAVAK+ +
Sbjct: 92 VIEK--EIAPKLIGREITNFKPMAEEFDKMTVNGNRLHT-AIRYGITQAILDAVAKTRKV 148
Query: 167 PLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNL 216
+ + N +P+ S + + K + ++ K+G
Sbjct: 149 TMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKG 208
Query: 217 KEDIEVLRAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT- 261
++ +E ++ +R H D + A + + ++ L E
Sbjct: 209 EKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPF 268
Query: 262 PVLFEQPVHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
+ E P+ +D E + + + + + ADE C +++DVK ++
Sbjct: 269 HLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMV 328
Query: 317 NIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDT 374
IK +G V + I +A+G+ GG ET + ++ G + L
Sbjct: 329 QIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGARQV--LAK 386
Query: 375 PLLLSEDPVL 384
P + ++ ++
Sbjct: 387 PGMGVDEGMM 396
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 1e-52
Identities = 72/348 (20%), Positives = 128/348 (36%), Gaps = 37/348 (10%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R +NVPL P A + V I + S G VG V + + + +
Sbjct: 12 RAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLL---DD 68
Query: 114 ACEVLKESPA--------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVS 165
++ P +A GL+ + A A ++MA DA+ K
Sbjct: 69 MAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLI---RMA-----AAGIDMAAWDALGKVHE 120
Query: 166 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 224
PL +L G + + + + A E A + GF +K ++G L +D+ V+R
Sbjct: 121 TPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVR 180
Query: 225 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+IR AV D ++D N+ A++ + L + G E+P + D+EG +
Sbjct: 181 SIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEG--VTWIEEPTLQHDYEGHQRI--- 235
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+ K V V E+ +++ K + + K+ GV G + + + G+ +
Sbjct: 236 -QSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPM 294
Query: 343 MIGGMVETRLAMGFAGHLSAGL---GCFKFIDLDTPLLLSEDPVLDGY 387
E HL A + +DL ++ G
Sbjct: 295 SSHLFQEISA------HLLAATPTAHWLERLDLAGSVIEPTLTFEGGN 336
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 4e-52
Identities = 70/350 (20%), Positives = 125/350 (35%), Gaps = 30/350 (8%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
+N+PL+ PFT + +R+ +G GWGE V A ++ A
Sbjct: 32 WVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWGAPVAAIVRRMA------ 85
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
L + AL + + + + AAV++A DA+ K+ + L G
Sbjct: 86 --PDLIGTSPFALEAFHRKQHMVPFFYGYLG-YAAIAAVDVACWDAMGKATGQSVTDLLG 142
Query: 174 GVSNT----------ITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEV 222
G P P AE A + ++ GF +KLK + D+ +
Sbjct: 143 GAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAI 202
Query: 223 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
LRA+R P + +D N + ++V L E+ E P EG+ V
Sbjct: 203 LRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELD--LEYLEDPCV--GIEGMAQV-- 256
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 341
K K + + + +D ++ N DVI+ + K G+ + GL
Sbjct: 257 --KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLG 314
Query: 342 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSG 391
+ + E +A + + +D+ L D +++ +
Sbjct: 315 MNLHSGGELGIATAAHLAVVSSTPVL-SRAIDSMYYLHADDIIEPLHLEN 363
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 2e-51
Identities = 72/359 (20%), Positives = 130/359 (36%), Gaps = 34/359 (9%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R P+ P + + V + +E S+G VGWGE + + +V
Sbjct: 14 RVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLV 73
Query: 110 KASEACEVLKESPA---------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAV 160
+ A + + A A +V + G A A +++AL D
Sbjct: 74 ETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQA-----IAGLDIALCDLA 128
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI 220
A+ PLW GG + I + ++P ++ ++ +G+ KLKVG + D+
Sbjct: 129 ARRAGQPLWAWLGGSGDRIGVYASG--INPENPEDVVARKAAEGYRAFKLKVGFDDARDV 186
Query: 221 EVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279
+R + + + DAN+G+ A ++ ++L E+P+ D
Sbjct: 187 RNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQ--LDWLEEPLRADRPA--AE 242
Query: 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS 338
+ +A + +A E+ + + + V+ LAK G G L + V A+
Sbjct: 243 WAELA-QAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAA 301
Query: 339 GLNLMIGGMVETRLAMGFAGHLSA------GLGCFKFIDLDTPL---LLSEDPVL-DGY 387
GL + + + + HL A G D PL L L +G
Sbjct: 302 GL-RYCPHYLGAGIGLQASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGR 359
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 6e-43
Identities = 74/361 (20%), Positives = 139/361 (38%), Gaps = 53/361 (14%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA-PVLPHVTAEDQQTAMVK 110
RP+ + L P T + + + I IE G G P +P +
Sbjct: 34 TARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPKAMK----YLVPA 89
Query: 111 ASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
+ ++L P F AGL A + V+MA+ DA+A+
Sbjct: 90 LHDMSDMLAGQPLAPAEIYDKTRKSLHFVGYAGLS---MIA-----ASGVDMAVWDALAR 141
Query: 163 SVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTTLKLKVGK-N 215
+ +MPL L GG ++ + P AEA EL ++ + GF LKL++G+ +
Sbjct: 142 AANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRDD 201
Query: 216 LKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274
DIE A+ AV D++ ++D N+G EA+ ++ ++G E+PV D++
Sbjct: 202 PAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLG--LEWIEEPVVYDNF 259
Query: 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIE 333
+G + + + E+ ++ + ++ D++ ++ GV G +
Sbjct: 260 DGYAQL----RHDLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAG 315
Query: 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC-------FKFIDLDTPLLLSEDPVLDG 386
V A G+ ++ + A + ++ P+L + DG
Sbjct: 316 VAGAWGI----------PMSTHLYPEVGAHVMRVTETAHWLEWQSWADPILQEPYALSDG 365
Query: 387 Y 387
Sbjct: 366 D 366
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-42
Identities = 64/348 (18%), Positives = 124/348 (35%), Gaps = 36/348 (10%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ P A +D V I + G G + + +
Sbjct: 35 RAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALK--PLVHLVEDI 92
Query: 114 ACEVLKESP-------AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
E+ ++ AM GL+ + ++MA DA+ +
Sbjct: 93 GRELAGKALVPVDLMKAMDAKFRLLGWQGLV--------GMAVSGLDMAFWDALGQLAGK 144
Query: 167 PLWRLFGGVSNTITT-DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLR 224
P+ L GG + I D + + + L + + GF +K K G +L D +++
Sbjct: 145 PVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIK 204
Query: 225 AIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
+R + PD + +LD N+ P EA + +L + E+PV +++ G V
Sbjct: 205 GLRALLGPDIALMLDFNQSLDPAEATRRIARLADYD--LTWIEEPVPQENLSGHAAV--- 259
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
+++ + + A E+ + + +D I L KV G+ G L + A+ + +
Sbjct: 260 -RERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPM 318
Query: 343 MIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 387
+ + H+ +D +L V+DG
Sbjct: 319 SSHIL------PEASAHVLPVTPTAHFLEVLDFAGAILTEPLRVIDGK 360
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 7e-42
Identities = 62/358 (17%), Positives = 114/358 (31%), Gaps = 35/358 (9%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE- 113
P+ A + + G G GE + + A
Sbjct: 32 PVAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLD 91
Query: 114 --ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLW 169
A + A +G+ L G + R A E+A +D K+ P+
Sbjct: 92 VYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVA 151
Query: 170 RLFGG-----------------VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLK 211
L GG D P + P A+ + GF ++KLK
Sbjct: 152 DLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLK 211
Query: 212 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
G +++ E ++A+R P LD N + + ++ V L + E P
Sbjct: 212 GGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDGV---LEYLEDPT- 267
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 329
+G+ V+ + + +A + + + + V+ V+ I G++ +
Sbjct: 268 -PGIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSA 322
Query: 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 386
I + G+ L + +++ HL+A D TP +D V G
Sbjct: 323 HIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPG 380
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-39
Identities = 55/341 (16%), Positives = 106/341 (31%), Gaps = 41/341 (12%)
Query: 61 IAPFTIATSRLDQV-ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK 119
P T + + Q E V++++ L NG V G+ + + A + + +
Sbjct: 36 GDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLND 95
Query: 120 ESPAMALG-------SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172
+ G L VR + AL+DA A + +
Sbjct: 96 HIKPLLEGRDVDAFLPNARFFDKLRIDGNLL-HTAVRYGLSQALLDATALASGRLKTEVV 154
Query: 173 GGVSNTITTDITIPI--VSPAEAAELASKYRKQG--------FTTLKLKVGKNLKEDIEV 222
IP+ S + K +G ++ K+G ++ E
Sbjct: 155 CDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREY 214
Query: 223 LRAIRA--------------VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQ 267
+R + +H D + P E + L + P+ E
Sbjct: 215 VRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEG 274
Query: 268 PVHRDD----WEGLGHV-SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322
PV + L + + + GV + ADE C + D+ ++ IK
Sbjct: 275 PVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPD 334
Query: 323 VG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 361
+G + ++ + G+ GG ET ++ H++
Sbjct: 335 LGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVA 375
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 64/363 (17%), Positives = 112/363 (30%), Gaps = 35/363 (9%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ I+++ G G GE Q A +
Sbjct: 37 PVAFADPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYADTVHLERLQAAAHAIVGRS 96
Query: 114 AC--EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLW 169
V++ + ALG L G ++ + R E+A +D + P+
Sbjct: 97 VFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVS 156
Query: 170 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRK-QGFTTLKLK 211
L GG D + P A + GF+ +KLK
Sbjct: 157 DLLGGAVRDAVPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLK 216
Query: 212 VGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
G +E++ + A+RA PD LD N + PQ +V+V L E + E P
Sbjct: 217 GGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVAAGL-EGVL--EYLEDPT- 272
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 329
+G+ V+ + + +A + + D + V N V+ G+ +
Sbjct: 273 -PGLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSR 327
Query: 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDGYE 388
+ + GL L + +++ HL+A D P +
Sbjct: 328 LLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRHEDVVAPGALN 387
Query: 389 VSG 391
Sbjct: 388 FCD 390
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 63/310 (20%), Positives = 112/310 (36%), Gaps = 39/310 (12%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E P+ PL F + + + R+ G +G ++
Sbjct: 28 ETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTG--DEHETMFDIDRIIHE 85
Query: 112 SEACEVLKESPA-------------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALID 158
A ++ + + + L AAV A+ D
Sbjct: 86 ELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLGLVAL------------AAVNTAIWD 133
Query: 159 AVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKYRKQGFTTLKLKVGK-N 215
AV K++ MPLW+L+GG N + A+ Y++ G +K KVG +
Sbjct: 134 AVGKALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGLS 193
Query: 216 LKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH-RDD 273
ED + A R A D +DAN+GYKP AV++ ++ ++ FE+PV +D
Sbjct: 194 AAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN--IRWFEEPVEWHND 251
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEII 332
+ V + + V V A ++ S + +++ DV N + G L
Sbjct: 252 KRSMRDV----RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTA 307
Query: 333 EVVRASGLNL 342
+ + + +
Sbjct: 308 AIATSYDVQM 317
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-35
Identities = 64/360 (17%), Positives = 117/360 (32%), Gaps = 55/360 (15%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E VP P + T + D + + G G G V V++
Sbjct: 12 EVSAYTVPTDYPESDGTLQWDSTTMILVEAH-GGGRKGLGYTYGDVSVGR------FVES 64
Query: 112 SEACEVLKESP------------AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDA 159
A A+ GV A + +AV++AL D
Sbjct: 65 KLAGVAEGSDALSPPAVWARMQAAIRNAGRPGVGAMAV------------SAVDIALWDL 112
Query: 160 VAKSVSMPLWRLFGGVSNTITTDIT--IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK 217
A+ + +PL + + E + G +K+KVG+ +
Sbjct: 113 KARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPE 172
Query: 218 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWE 275
+D E +RA R A+ ++DAN Y ++A+ G++ E+PV +D E
Sbjct: 173 KDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGIS--YLEEPVSSEDRE 230
Query: 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEV 334
GL + + GV++AA E +L + + D++ + + G+ G L + +
Sbjct: 231 GLRLLR--DRGPGGVAIAAGEYEWTLPQLHDLAGC--VDILQADVTRCGGITGLLRVDGI 286
Query: 335 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-------DLDTPLLLSEDPVLDGY 387
R + A + H + + ++ L G
Sbjct: 287 CRGHQIPFSAHC------APAVSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGS 340
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-35
Identities = 71/351 (20%), Positives = 125/351 (35%), Gaps = 41/351 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
E PL L P+ A IRI +G GWGE K
Sbjct: 10 ETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHV----GFTK- 64
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
L A + S+ + HQ A +AV MAL + AK+ + L
Sbjct: 65 -RIIPFLLGKQAGSRLSLVRTIQK---WHQRA-----ASAVSMALTEIAAKAADCSVCEL 115
Query: 172 FGGVSNTITTDITIPI-----------VSPAEAAELASKYRKQGFTTLKLKVGK-NLKED 219
+GG IP+ + + K+GF +K+K+G + KED
Sbjct: 116 WGGRYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKED 170
Query: 220 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGL 277
+ + A++ + ILDAN+ Y A + E T + + E+P+ D +
Sbjct: 171 VRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEW--TNIGWLEEPLPFDQPQDY 228
Query: 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVR 336
+ + + V VA E+ + ++ D+I + V G+ + +++ R
Sbjct: 229 AML----RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLAR 284
Query: 337 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGY 387
G+ + L+ +A A L + + D + D + + +
Sbjct: 285 YFGVRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPF 334
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-35
Identities = 59/369 (15%), Positives = 122/369 (33%), Gaps = 49/369 (13%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIE-----LSNGCVGWGEAPVLPHVTAEDQQTAM 108
R + P+ +P A ++ + + VG+G + +
Sbjct: 12 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG-----GL 66
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR---------AAVEMALIDA 159
++ A +L+ P L + K ++MA+ DA
Sbjct: 67 IRERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDA 126
Query: 160 VAKSVSMPLWRLFGGVSNTITTD---------ITIPIVSPAEAAELASKYRKQGFTTLKL 210
VAK PL+RL P + Y +G+ +K+
Sbjct: 127 VAKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKM 186
Query: 211 KVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
K+G ++ED + A+ + D+ +DAN + + + + L + +E+
Sbjct: 187 KIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYP--LFWYEEV 244
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK----GNLADVINIKLAKV- 323
D+ ++ + + +A E+ S D + +++ D + A
Sbjct: 245 GDPLDYALQAALA----EFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSY 300
Query: 324 GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG---CFKFIDLDTPLLLSE 380
G+ +EV++ G + + +++AGLG + DL P
Sbjct: 301 GLCEYQRTLEVLKTHGWSPS---RCIPHGGHQMSLNIAAGLGLGGNESYPDLFQPYGGFP 357
Query: 381 DPVL--DGY 387
D V +G+
Sbjct: 358 DGVRVENGH 366
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 7e-34
Identities = 55/356 (15%), Positives = 114/356 (32%), Gaps = 36/356 (10%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA-MVKASE 113
P+ + I I + G GE+ Q+ A +K
Sbjct: 36 PVAFHDMPLLNSVGVHEPFALRSIIEIITEDS-YGLGESYGDSAHLDRLQKAADKIKGLS 94
Query: 114 AC--EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLW 169
V+ + +L + + G + + + E+A +D K + +
Sbjct: 95 VYSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVS 154
Query: 170 RLFGG-----------------VSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLK 211
L GG D P + P + A K + GF +KLK
Sbjct: 155 DLLGGRVRDSVQYSAYLFYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLK 214
Query: 212 VGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
G +++ ++A+ P LD N + + + V ++L + E P
Sbjct: 215 GGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVAKELEGI---VEYLEDPA- 270
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 329
+ EG+ V + + +A + + + D + + + VI G+ +
Sbjct: 271 -GEIEGMAAV----AKEASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQ 325
Query: 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVL 384
+ + GL L + +++ HL++ + D P ++ V+
Sbjct: 326 TLASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVV 381
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 71/349 (20%), Positives = 135/349 (38%), Gaps = 41/349 (11%)
Query: 15 PQKPICQMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLN--VPLIAPFTIATSRLD 72
P P + ++ +N ++ + + + PL+ +P T+
Sbjct: 9 PSLPCWRCFAASGRITLSIKRFTQN-SRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTI 67
Query: 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP---------- 122
+ + + IR+E S G G+GEA A T+++ + A ++
Sbjct: 68 KRDAIIIRVETSEGITGYGEAHPGRSPGA---ITSLIHNTIAPMLIGMKATDCVGAWQRV 124
Query: 123 ---AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI 179
++ + A + + ++MAL D K+ +MPL+ L GG I
Sbjct: 125 HRMQLSSHGLGAGAALAI------------SGIDMALWDIRGKAANMPLYELLGGSKRRI 172
Query: 180 ---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSF 235
I + AE A +Y +G+ LKL++G + DIE +R +R + +
Sbjct: 173 PAYAGGIALGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDI 232
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+ DAN Y +A VL L E+ E+P +D+ +AK V +AA
Sbjct: 233 LTDANTAYTMADARRVLPVLAEIQ--AGWLEEPFACNDFASY---REVAKITPLVPIAAG 287
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343
E+ + + +++ V L+K G+ + I + A + +
Sbjct: 288 ENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPIN 336
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 35/384 (9%)
Query: 22 MASSPPAAAAPTSFSFKNLTQTFTVD-VQRAENRPLNVPLIAPFTIATSR------LDQV 74
MA S + A + + T T D ++ + +PL P + A L +V
Sbjct: 1 MALSANSDAVTYAKAANTRTAAETGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEV 60
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV- 133
+ I +G G G + A K E + L + ++ +
Sbjct: 61 AIIIAEIRSRDGFEGVGFS--YSKRAGGQGIYAHAK--EIADNLLGEDPNDIDKIYTKLL 116
Query: 134 -AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITIPIVS 189
AG G + + + +++AL D AK +PL +L G +++ T
Sbjct: 117 WAGASVGRSGMAVQAI-SPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTP 175
Query: 190 PAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 247
+ + R+ G +KLKVG+ N EDI L A+R A+ + ++DAN+ + +
Sbjct: 176 LDQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRET 235
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307
A+ + K+ + + E+P+ D EG + +A E S + +++
Sbjct: 236 AIRMGRKMEQFN--LIWIEEPLDAYDIEGHAQL----AAALDTPIATGEMLTSFREHEQL 289
Query: 308 VKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 366
+ GN +D + +V G+ L+I+++ G L +E L HLSA
Sbjct: 290 ILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVHL------HLSAAYPL 343
Query: 367 FK---FIDLDTPLLLSEDPVLDGY 387
+ PL + + DG
Sbjct: 344 EPWLEHFEWLNPLFNEQLELRDGR 367
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 5e-32
Identities = 63/362 (17%), Positives = 124/362 (34%), Gaps = 43/362 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA 111
+ L++P + + + +R+ + G +GWGE P +
Sbjct: 9 DLFYLSMPEVTDAADGSQDA-----LLVRVA-AGGHIGWGECEAAPLPSIAAFVCPKSHG 62
Query: 112 SEACEVLKESPAMALG-SVFGVVA-------GLLPGHQFASQLKVRAAVEMALIDAVAKS 163
C + + LG + G + + +EMAL D + +
Sbjct: 63 --VCRPVSD---SVLGQRLDGPDDIARIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRR 117
Query: 164 VSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVGK----NLK 217
+S P W L G S+ + + +P E E A R+ GF +K G +
Sbjct: 118 LSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGRGTVA 177
Query: 218 EDIEVLRAIR-AVHPDSSFILDANEGYKP--QEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274
D + + A R + PD ++D + + + A L L G + E+P
Sbjct: 178 ADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAG--VLWLEEPFDAGAL 235
Query: 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIE 333
+ A V +A E+ + + ++ I I ++ G+ A + +
Sbjct: 236 AAHAAL---AGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVAD 292
Query: 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLL--LSEDPVL---D 385
+A G+ + + LA+ + AGL + + L ++ D + +
Sbjct: 293 AAQARGI-TYVNHTFTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAE 351
Query: 386 GY 387
G
Sbjct: 352 GL 353
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 7e-32
Identities = 60/298 (20%), Positives = 106/298 (35%), Gaps = 38/298 (12%)
Query: 52 ENRPLNVPLIAPFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
+PL T +T + E + +RIE S+G G G MV
Sbjct: 8 RTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYT--YTVNHGGAAVATMVD 65
Query: 111 ASEACEVLKESP--------AMALGSVF----GVVAGLLPGHQFASQLKVRAAVEMALID 158
+L +M + G + +AV++AL D
Sbjct: 66 KDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHATSAI------------SAVDIALWD 113
Query: 159 AVAKSVSMPLWRLFGGVSNTIT--TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 215
PLW+LFGG + + A+ A ++ GF +K+KVG+ +
Sbjct: 114 LKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRFLAGGFRAIKMKVGRPD 173
Query: 216 LKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274
LKED++ + A+R + ++DAN + A+ L E+P DD
Sbjct: 174 LKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFD--LHWIEEPTIPDDL 231
Query: 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 331
G + + G ++A E+ +L D V+ + ++ + G ++
Sbjct: 232 VGNARI----VRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-31
Identities = 70/353 (19%), Positives = 125/353 (35%), Gaps = 34/353 (9%)
Query: 52 ENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
+PL P + A + ++ + IE + G G G + Q
Sbjct: 19 RISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFS--YSKRAGGPGQ 76
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVV--AGLLPGHQFASQLKVRAAVEMALIDAVAKS 163
A + E L + ++ + AG G S + A ++AL D AK
Sbjct: 77 FAHAR--EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAI-GAFDVALWDLKAKR 133
Query: 164 VSMPLWRLFGGVSNTI---TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKED 219
+ L +L G +++ T + AS ++G +KLKVG+ + D
Sbjct: 134 AGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQPDGALD 193
Query: 220 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
I + A+R + ++DAN+ + A + V E+P+ D EG
Sbjct: 194 IARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFN--LVWIEEPLDAYDHEGHA 251
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRA 337
+ +F +A E S + +++ AD + +V G+ L+I +
Sbjct: 252 AL----ALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEH 307
Query: 338 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFK---FIDLDTPLLLSEDPVLDGY 387
+GL L +E + HL+A + PL + DG
Sbjct: 308 AGLMLAPHFAMELHV------HLAAAYPREPWVEHFEWLEPLFNERIEIRDGR 354
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 60/303 (19%), Positives = 107/303 (35%), Gaps = 41/303 (13%)
Query: 52 ENRPLNVPLIA-PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
E L++PL + + +T + V +I S+G G+G H+ ++ T+ +
Sbjct: 7 EPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCIS 66
Query: 111 ASEACEVLKESPA--------MALGSVF------GVVAGLLPGHQFASQLKVRAAVEMAL 156
A +L E + +A G+ L AAV++AL
Sbjct: 67 DCYAPLLLGEDASDHSRLWTKLARYPSLQWVGRAGITHLAL------------AAVDVAL 114
Query: 157 IDAVAKSVSMPLWRLFGGVSNT-----ITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 211
D AK +PLW GG T + A A + GFT LK+K
Sbjct: 115 WDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIK 174
Query: 212 VGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 269
VG + DI L A+R V +D N + ++ FE+P+
Sbjct: 175 VGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD--IYWFEEPL 232
Query: 270 HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGA 328
DD + + +A E ++D + + + + ++ G+
Sbjct: 233 WYDDVTSHARL----ARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEY 288
Query: 329 LEI 331
+++
Sbjct: 289 IQV 291
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 52/376 (13%), Positives = 110/376 (29%), Gaps = 53/376 (14%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P+ ++ + + ++ ++G G GE P + + A
Sbjct: 34 IPVAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPGGEKIRQ-----TLEDAKP 88
Query: 114 ACEVLKESPA---------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
V+ ++ + L + + V A+E A++D + + +
Sbjct: 89 L--VIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFL 146
Query: 165 SMPLWRLFGG-------------------------------VSNTITTDITIPIVSPAEA 193
+ + L G ++P
Sbjct: 147 GVTVASLLGDGQQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESV 206
Query: 194 AELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251
LA Y K GF KLK G + E+ E + A+ PD+ LD N + EAV++
Sbjct: 207 VRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266
Query: 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311
++L + E P + + + G+ A + + +
Sbjct: 267 GKQLKGV---LAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQ 323
Query: 312 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 370
D+ + G++ + ++ GL +++ H++A G I
Sbjct: 324 SVDIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAI 383
Query: 371 DLDTPLLLSEDPVLDG 386
D +
Sbjct: 384 DTHWIWQEGNQRLTKE 399
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 62/299 (20%), Positives = 119/299 (39%), Gaps = 36/299 (12%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAI--RIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
+ L+ P+ + + ++ I + G G G + +
Sbjct: 9 KAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSGPYDLAV---LKRAI 65
Query: 110 KASEACEVLKESPA-------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
+ +++ E PA G A + V++AL D +
Sbjct: 66 EDVIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAA-----MSGVDIALWDLKGR 120
Query: 163 SVSMPLWRLFGGVSNTITTDITIPI--------VSPAEAAELASKYRKQGFTTLKLKVGK 214
+++ P+++L GG + + ++P +AA+ + + +QGFT KLKVG+
Sbjct: 121 AMNQPIYQLLGGKFH----TRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR 176
Query: 215 NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
++D LRA+R V D ++DAN+ +A+ +L L E G FE+P+ DD
Sbjct: 177 APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG--CYWFEEPLSIDD 234
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI 331
EG + V +A E+ + + ++ + DV+ ++ G+ AL I
Sbjct: 235 IEGH---RILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAI 290
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 60/384 (15%), Positives = 119/384 (30%), Gaps = 55/384 (14%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAP-----------VLPHVTAED 103
P+ + + + ++ + G G GE P V+P V +
Sbjct: 17 PVAGRDSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPGGEGIRQALERVIPLVVGQS 76
Query: 104 -----QQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMAL 156
+ ++ + A A A +L + AVE AL
Sbjct: 77 IGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAAL 136
Query: 157 IDAVAKSVSMPLWRLFGG-------------------------------VSNTITTDITI 185
+D + + + +P+ L G ++
Sbjct: 137 LDLLGQFLEVPVAELLGAGQQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHE 196
Query: 186 PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 243
++PA A LA ++ GF KLK G E++E + AI+A P + LD N +
Sbjct: 197 AAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAW 256
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
EA+ + + + E P + V K G+ A +
Sbjct: 257 SLNEAIALCKGQGHL---VAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIATDWRQ 313
Query: 304 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363
+ V+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 314 MGHAVQLHAVDIPLADPHFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAA 373
Query: 364 L-GCFKFIDLDTPLLLSEDPVLDG 386
G ID +++ +
Sbjct: 374 APGNITAIDTHWIWQEAQERLTRE 397
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-28
Identities = 66/393 (16%), Positives = 121/393 (30%), Gaps = 54/393 (13%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + +E +G G GE P + + K
Sbjct: 14 PVAGEDGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILN-----GLEKCRSL 68
Query: 115 CEVLKESP-------AMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVS 165
V + A G + F ++ V A+E AL D +++
Sbjct: 69 --VEGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALG 126
Query: 166 MPLWRLFGG--------------------------------VSNTITTDITIPIVSPAEA 193
MP+ L G + ++P
Sbjct: 127 MPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAV 186
Query: 194 AELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251
A LA Y + GF KLK G +E+ + +RA+ P++ LD N +K EAV V
Sbjct: 187 ANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDPNGAWKLDEAVRV 246
Query: 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311
LE + + E P ++ K + G+ A + ++ V+ N
Sbjct: 247 LEPIKHL---LSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLN 303
Query: 312 LADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFI 370
D+ + GA+ + E+ G+ +++ H++A G I
Sbjct: 304 SVDIPLADCHFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGEITAI 363
Query: 371 DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
D + + +++ G G
Sbjct: 364 DTHWIWQDGQRITREPFQIRDGKLTVPKTPGLG 396
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 58/323 (17%), Positives = 114/323 (35%), Gaps = 36/323 (11%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP-------------AMA 125
+R+ G VGWGE + A A++ A V+
Sbjct: 55 VRMTTEAGTVGWGETYGIVAPGA---VAALINDLLAGFVIGRDASDPSAVYDDLYDMMRV 111
Query: 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT- 184
G G L AA+++AL D + + L GG ++ ++
Sbjct: 112 RGYTGGFYVDAL------------AALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSG 159
Query: 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGY 243
+P + ELA ++ +GF K + +R + P + D +
Sbjct: 160 LPERTLKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQ 219
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
P+ A+E++ ++ P E PV +D GL V V +A E R+ D
Sbjct: 220 TPERALELIAEMQPFD--PWFAEAPVWTEDIAGLEKV----SKNTDVPIAVGEEWRTHWD 273
Query: 304 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363
++ ++ ++ ++ G+ + I + G++++ V + + + S+
Sbjct: 274 MRARIERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASST 333
Query: 364 LGCFKFIDLDTPLLLSEDPVLDG 386
L K + + +LDG
Sbjct: 334 LSMLKGHEFQHSIFEPNRRLLDG 356
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 67/371 (18%), Positives = 115/371 (30%), Gaps = 67/371 (18%)
Query: 52 ENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E L + V I +G G+G + + AED
Sbjct: 18 EFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHMTPEWAED------ 71
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
V+ +F L R +E ++D + + P++
Sbjct: 72 -------VIGRRLL----DLFDDRGRLR--------EAYRLQLEYPVLDWLGQRQGKPVY 112
Query: 170 RLFGGVSNTITTDITIPI----------------VSPAEAAELASKYRKQGFTTLKLKVG 213
L G + +P + A E A + +G K+KVG
Sbjct: 113 DLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVG 172
Query: 214 ---------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263
+ K DI ++R I P ++DAN Y EVL L ++
Sbjct: 173 RGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN--LY 230
Query: 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323
E+ H D+ + + V +A E S ++ +G DV+ +
Sbjct: 231 WLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRG-RVDVLQYDIIWP 289
Query: 324 GVLGALEIIEVVRASGLNLMI---GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL---L 377
G +E+ E + A GL G + HLSA + F+F++ D +
Sbjct: 290 GFTHWMELGEKLDAHGLRSAPHCYGNAYGIYASG----HLSAAVRNFEFVEYDDITIEGM 345
Query: 378 LSEDPVL-DGY 387
+ +G
Sbjct: 346 DVSGYRIENGE 356
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 66/332 (19%), Positives = 122/332 (36%), Gaps = 44/332 (13%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP-------------AMA 125
+RIE NG VGWGE L A ++ A + P
Sbjct: 57 VRIETENGAVGWGETYGLVAPRA---TMEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRV 113
Query: 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT 184
G G L AA+++AL D K +P+ +L GG + I I+
Sbjct: 114 RGYTGGFYVDAL------------AAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYIS 161
Query: 185 -IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEG 242
+P + A+ AELA+ ++ +GF++ K + + +R + P D +
Sbjct: 162 GLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWA 221
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302
+ EAV +++ + G E PV +D +GL V ++A E R++
Sbjct: 222 HTASEAVALIKAMEPHG--LWFAEAPVRTEDIDGLARV----AASVSTAIAVGEEWRTVH 275
Query: 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362
D+ V ++ ++ G+ + I + ++ + + + + SA
Sbjct: 276 DMVPRVARRALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASA 335
Query: 363 GLGCFKFI-------DLDTPLLLSEDPVLDGY 387
L + + LL+ + L+G
Sbjct: 336 ALANVDCHEFQHSIFEPNRRLLVGDMDCLNGE 367
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 52/306 (16%), Positives = 99/306 (32%), Gaps = 58/306 (18%)
Query: 52 ENRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
E R A QVE + + +G G E +
Sbjct: 7 EVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFT------APEIVRPH 60
Query: 108 MVKASEACEVLKESPA--------MALGSVFG----VVAGLLPGHQFASQLKVRAAVEMA 155
+++ ++ E +A L A V+ A
Sbjct: 61 VIEKFVKKVLIGEDHRDRERLWQDLAHWQRGSAAQLTDRTL-------------AVVDCA 107
Query: 156 LIDAVAKSVSMPLWRLFGGVSNTI--------TTDITIPIVSPAEAAELASKYRKQGFTT 207
L D +S+ P+++L GG + + ++ + +P + A K+G+
Sbjct: 108 LWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKG 167
Query: 208 LKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
+KL ++K D++ A+R AV PD ++DA Y +A+ + L ++G
Sbjct: 168 IKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLG 227
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINI 318
E+P+ + D + V ES + +K D++
Sbjct: 228 --FDWIEEPMDEQSLSSYKWL----SDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 281
Query: 319 KLAKVG 324
+ VG
Sbjct: 282 GVNDVG 287
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 47/264 (17%), Positives = 92/264 (34%), Gaps = 40/264 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
I+I +G GWGEA + E ++K E + ++L S
Sbjct: 39 IKITTEDGIEGWGEAFSINF--REKGIAIIIK--ELFREISNIPNLSIKSFYNKISLLSD 94
Query: 130 F---GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTD 182
+ +A+E+AL D K ++PL L T
Sbjct: 95 GHRGLDFSSAT------------SAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATC 142
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDAN 240
+ + K+ + + +K+ +L I+ + +R V + +LD
Sbjct: 143 WSDLKKDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLA 202
Query: 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 300
+ L+++ P E+PV ++ L + K+ F + V E
Sbjct: 203 VPEDLDQTKSFLKEVSSFN--PYWIEEPVDGENISLLTEI----KNTFNMKVVTGEKQSG 256
Query: 301 LDDVKKIVKGNLADVINIKLAKVG 324
L ++++ N AD+ N ++ +G
Sbjct: 257 LVHFRELISRNAADIFNPDISGMG 280
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-24
Identities = 53/351 (15%), Positives = 115/351 (32%), Gaps = 53/351 (15%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-------MALGSVFG 131
+ + ++G G GEAP + A+ +A V+ +
Sbjct: 42 VILTDNSGHTGVGEAPGGATIEN-----ALTEAIPH--VVGRPISILNKIVNDMHNGYLD 94
Query: 132 VVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLFGG--------------- 174
+ +L+V A A+E AL+D + + + +P+ L G
Sbjct: 95 ADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFY 154
Query: 175 VSNTITTDITIP-----------------IVSPAEAAELASKYRKQGFTTLKLKVG-KNL 216
V + TD+ + + A A+ + GF KLK G
Sbjct: 155 VGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEG 214
Query: 217 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276
++I+ + ++ PD+ LD N + EA+++ + L ++ E P ++
Sbjct: 215 SKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQLCKGLNDV---LTYAEDPCIGENGYS 271
Query: 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 336
+ + + G+ A + + ++ + D+ + GA + ++
Sbjct: 272 GREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLADPHFWTLTGASRVAQLCN 331
Query: 337 ASGLNLMIGGMVETRLAMGFAGHLSAGL-GCFKFIDLDTPLLLSEDPVLDG 386
GL +++ H+ A G +D + +
Sbjct: 332 EWGLTWGCHSNNHFDISLAMFSHVGAAAPGNPTALDTHWIWQEGDFYLTKN 382
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 57/315 (18%), Positives = 109/315 (34%), Gaps = 61/315 (19%)
Query: 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVEN------VAIRIELSNGCVGWGEAPVL 96
T + P + D + + + +E +G +G G A +
Sbjct: 30 TRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALA 89
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF----GVVAGLLPGHQFAS 144
P V ++ A V+ E P M S G+ +
Sbjct: 90 PSVVK-----KVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAI------- 137
Query: 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELA 197
+A+++A+ D + K V P+++L GG + IP+ S + A
Sbjct: 138 -----SAIDIAIWDLMGKLVGKPVFKLLGGRTKD-----RIPVYYSKLYAGSIEAMQKEA 187
Query: 198 SKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAV 249
+ K G+ K + G ++E+++ + A+R + D+ +L+ G+ A
Sbjct: 188 EEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAK 247
Query: 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309
+L KL P E+PV DD G + V ++ E S+ +++
Sbjct: 248 RMLPKLAPYE--PRWLEEPVIADDVAGYAEL----NAMNIVPISGGEHEFSVIGCAELIN 301
Query: 310 GNLADVINIKLAKVG 324
V+ +VG
Sbjct: 302 RKAVSVLQYDTNRVG 316
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 57/293 (19%), Positives = 107/293 (36%), Gaps = 41/293 (13%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA---PVLPHVTAEDQQTAM 108
E L VP + V +++ G VG GEA P++ E QT
Sbjct: 9 EVLHLRVPAMDADCEWGEDA-----VIVKVHTDKGIVGVGEADSSPLVVQACIEAPQTNF 63
Query: 109 VKASEACEVLKESPA--------MALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALID 158
++ E+ M GS + G + A A+++AL D
Sbjct: 64 YCNGLKRLLIGENALEIERLWNKMYWGSNYMGRRGAG----------IHAISAIDIALWD 113
Query: 159 AVAKSVSMPLWRLFGG-VSNTITTDIT-IPIVSPAEAAELASKYRKQGFTTLKLKVG--- 213
+ +P+ L GG + I T IP P + + + QGF+++K G
Sbjct: 114 IAGQFYGVPVHTLLGGKYRDKIRCYGTFIPADKPEDNVAIVQGLKDQGFSSIKFGGGVMG 173
Query: 214 KNLKEDIEVLRAIR-AVHPDSSFILDANEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271
+ D +++A+R A P+ +D + + + ++L E E+PV
Sbjct: 174 DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFN--LNWIEEPVLA 231
Query: 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
D + + +A ES + + ++ + + AD++ + + G
Sbjct: 232 DSLISYEKL----SRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCG 280
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 3e-23
Identities = 51/273 (18%), Positives = 87/273 (31%), Gaps = 53/273 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLP 138
+R+ +G GWG+ + + + G
Sbjct: 39 VRVTTQDGAQGWGQVSTYHADIT---------CTVLHRQVAP-----------WMLGQDI 78
Query: 139 -------------GHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLFGGVSNTI---T 180
H+F RA V+ A+ D K P+ + GG I
Sbjct: 79 TDLDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYA 138
Query: 181 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIR-AVHP 231
+ + I EA L QGFT K++ G + E++ +R +
Sbjct: 139 SSMKRDITPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGD 198
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
D ++DAN Y P A+EV L + G FE+P + V D +
Sbjct: 199 DVDLLIDANSCYTPDRAIEVGHMLQDHG--FCHFEEPCPYWELAQTKQV----TDALDID 252
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
V E L ++++ D++ + +G
Sbjct: 253 VTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLG 285
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 5e-23
Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 57/283 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+++ +G GWGE + A+++ A + E+P +
Sbjct: 27 VKLTTDDGITGWGECYAASV--GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFT 84
Query: 131 ----GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-------- 178
G + +E+A D + K+ P+W L GG N
Sbjct: 85 QRPDLTAIGAF------------SGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYL 132
Query: 179 ---ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEV 222
IT S AAE A+ +G+T +K ++ +E
Sbjct: 133 YPLPHHPITPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEF 192
Query: 223 LRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281
R IR AV + + + + A+ + + + P+ +E+PV D+ + V
Sbjct: 193 CRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYS--PLWYEEPVPPDNVGAMAQV- 249
Query: 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ VA E + + +++ A ++ L + G
Sbjct: 250 ---ARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAG 289
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 7e-23
Identities = 63/324 (19%), Positives = 108/324 (33%), Gaps = 61/324 (18%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P ++ + T V I + +G G G L T + V A
Sbjct: 18 PTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGKGT--EVVVCAVNALA- 74
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR--------AAVEMALIDAVAKSVSM 166
+ + F L + AAV A+ D AK
Sbjct: 75 -HHVLNKDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGK 133
Query: 167 PLWRLFGGVSN---------------------------------------------TITT 181
P+W+L + TT
Sbjct: 134 PVWKLLVDMDPRMLVSCIDFRYITDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTT 193
Query: 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN 240
S +L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN
Sbjct: 194 SCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDAN 253
Query: 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 300
+ + EAVE + KL + P+ E+P DD G +S A G+ +A E C +
Sbjct: 254 QRWDVPEAVEWMSKLAKFK--PLWIEEPTSPDDILGHATISK-ALVPLGIGIATGEQCHN 310
Query: 301 LDDVKKIVKGNLADVINIKLAKVG 324
K++++ + I ++G
Sbjct: 311 RVIFKQLLQAKALQFLQIDSCRLG 334
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 46/269 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++E G GWGE + A V E + L + P+ M
Sbjct: 19 LKVETDEGVTGWGEPVIEGRART---VEAAVH--ELSDYLIGQDPSRINDLWQTMYRAGF 73
Query: 130 F---GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
+ ++ + A ++ AL D K + +P++ L GG+ + T +
Sbjct: 74 YRGGPILMSAI------------AGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWV 121
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG---------KNLKEDIEVLRAIR-AVHPDSSF 235
PA+ + GF KL + + + + IR A F
Sbjct: 122 GGDRPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEF 181
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
LD + A ++++L P+ E+PV + E + + +AA
Sbjct: 182 GLDFHGRVSAPMAKVLIKELEPYR--PLFIEEPVLAEQAETYARL----AAHTHLPIAAG 235
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKVG 324
E S D K++++ ++ L+ G
Sbjct: 236 ERMFSRFDFKRVLEAGGVSILQPDLSHAG 264
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 6e-22
Identities = 48/282 (17%), Positives = 95/282 (33%), Gaps = 56/282 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++++ +G G GE ++ +L P
Sbjct: 26 VKLKTDDGIEGVGEIYSATF--GPKAMAPIIDDVFERHLLNRDPHHVERLFRQAYSSGFT 83
Query: 131 ----GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-------- 178
+ G++ + +EMA D + K+ + P++ L GG +
Sbjct: 84 QRPDLTMMGVV------------SGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYL 131
Query: 179 --ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVL 223
P AAE A++ K GFT +K + L
Sbjct: 132 YPKNAKGEYDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFC 191
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R +R AV + + + P A+ + ++L + P+ FE+PV E + V
Sbjct: 192 RRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYD--PLWFEEPVPPGQEEAIAQV-- 247
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ +A E + + K+++ A ++ + +A+VG
Sbjct: 248 --AKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 42/292 (14%), Positives = 98/292 (33%), Gaps = 52/292 (17%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
P++ + + ++ + + + +E N G+ + TA + +V+
Sbjct: 49 TPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVS------TAGEMGCFIVEKHL 102
Query: 114 ACEVLKESP--------AMALGSVF-----GVVAGLLPGHQFASQLKVRAAVEMALIDAV 160
+ + M +++ G+V + + V++AL D
Sbjct: 103 NRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTI------------SCVDLALWDLF 150
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------- 213
K V +P+++L GG I + +LA ++ GF K+
Sbjct: 151 GKVVGLPVYKLLGGAVRD-----EIQFYATGARPDLA---KEMGFIGGKMPTHWGPHDGD 202
Query: 214 KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
+++D ++ +R PD +LD A ++ E+ +
Sbjct: 203 AGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFN--LKWIEECLPPQ 260
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+EG + G+ V + E +L + + + D++ + G
Sbjct: 261 QYEGYRELK--RNAPAGMMVTSGEHHGTLQSFRTLAETG-IDIMQPDVGWCG 309
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-21
Identities = 40/280 (14%), Positives = 86/280 (30%), Gaps = 55/280 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESP----------- 122
+++ NG G GEA P + + + +K P
Sbjct: 29 VKVTDENGVYGLGEADGPPECMK--AFSEIENEHKWLNNIKEAVIGRDPLEFRANYNRMY 86
Query: 123 --AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-- 178
+G + + + ++MAL D K + +P ++L GG
Sbjct: 87 DTTKWIGMRGLGLFAI-------------SGIDMALYDLAGKQLGVPAYKLMGGAQKAQL 133
Query: 179 --------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAI 226
L +K +++G +K+ + + KE + LR +
Sbjct: 134 TPYFTLYPSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLREL 193
Query: 227 R-AVHPDSSFILDANEGYKP-QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284
R + D ++D + Q+A +L ++ E + DD G +
Sbjct: 194 REVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDID--LYFIEACLQHDDLIGHQKL---- 247
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ E + + ++ ++ V+ + G
Sbjct: 248 AAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCG 287
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-21
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 47/271 (17%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP--------AMALGSVF 130
+RI +G VGWGEA + A + + + + M V
Sbjct: 28 VRITAEDGTVGWGEASPMLGGIA--SLGVVARDIAPF-LEGQEVLDHAVLLDRMMHRLVK 84
Query: 131 ----GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-----ITT 181
G+ L AA ++AL D K + P+++L GG T +
Sbjct: 85 LGPEGIATAAL------------AACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSI 132
Query: 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIR-AVHPDS 233
E+A + + +K++ ++ DI RA+R + PD+
Sbjct: 133 GGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDA 192
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293
DAN GY A+ V L ++G FE+PV +G V + ++V+
Sbjct: 193 VIGFDANNGYSVGGAIRVGRALEDLG--YSWFEEPVQHYHVGAMGEV----AQRLDITVS 246
Query: 294 ADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
A E +L +K ++ ++ + K+G
Sbjct: 247 AGEQTYTLQALKDLILSG-VRMVQPDIVKMG 276
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 6e-21
Identities = 51/296 (17%), Positives = 101/296 (34%), Gaps = 54/296 (18%)
Query: 53 NRPLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ ++ P+ SR ++ + + + IE S+G VG+ +
Sbjct: 33 DDHISTPMGKYPEYRQSRRSFGINVLGTLVVEIEASDGNVGFAVTTGGEPAAY------I 86
Query: 109 VKASEACEVLKESP--------AMALGSVF----GVVAGLLPGHQFASQLKVRAAVEMAL 156
V+ A + M +++ G+V + + V++AL
Sbjct: 87 VEKHLARFLEGARVTDIERIWDQMYNSTLYYGRKGLVINTI------------SGVDLAL 134
Query: 157 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--- 213
D + K P+ +L GG + + +LA +K GF K+ +
Sbjct: 135 WDLLGKVRREPVHQLLGGAVRD-----ELQFYATGARPDLA---QKMGFIGGKMPLHHGP 186
Query: 214 ----KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
+ LK+++E L +R V PD + D A + E G E+
Sbjct: 187 SEGEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYG--LKWIEEA 244
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ DD+ G + G+ V E + + +++ D+I + G
Sbjct: 245 LPPDDYWGYAELRR--NAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCG 298
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 51/292 (17%), Positives = 94/292 (32%), Gaps = 66/292 (22%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
++I G G+GE + V A + L P M
Sbjct: 30 VKINTDEGISGFGEVGLAYGVGA-------SAGIGMAKDLSAIIIGMDPMNNEAIWEKML 82
Query: 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT------- 178
+ +G G + + +++AL D K+ +PL+++ GG S
Sbjct: 83 KKTFWGQGGGGIFSA-------AMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYAS 135
Query: 179 ------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------- 213
+ P + A+ A +G+ +K+
Sbjct: 136 QLQFGWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTD 195
Query: 214 KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
K L+ + + AIR AV PD I + + A++ + E+G +E+PV
Sbjct: 196 KILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG--IFYYEEPVMPL 253
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + V DK + +AA E + ++ VI + G
Sbjct: 254 NPAQMKQV----ADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCG 301
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 8e-21
Identities = 49/277 (17%), Positives = 92/277 (33%), Gaps = 45/277 (16%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ I G G GEA + M+K ++ + P+ M S +
Sbjct: 23 VEISTDEGITGAGEAGIAYG-VGGTAAAGMIKDLSERFLIGKDPSRIEELWSTMYDHSFW 81
Query: 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN----TITTDITIP 186
+ A +A+E AL D K + +P++ LFGG
Sbjct: 82 A-------KNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGA 134
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIR- 227
+P E A + K+G+ LK + ++ ++A+R
Sbjct: 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRD 194
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 287
A P+ ++D + G E + K+ E+ E+P D L + ++
Sbjct: 195 AAGPEIELMVDLSGGLTTDETIRFCRKIGELD--ICFVEEPCDPFDNGALKVI----SEQ 248
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ +A E + +KI + +I + G
Sbjct: 249 IPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAG 285
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 1e-20
Identities = 72/332 (21%), Positives = 114/332 (34%), Gaps = 64/332 (19%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P + L + V +R + + G+G + D QTA V A
Sbjct: 15 PTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGR--GNDVQTAAVAA--L 70
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR--------AAVEMALIDAVAKSVSM 166
E + + + G A L L AV A D A++ +
Sbjct: 71 AEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANK 130
Query: 167 PLWRLFGGVSN---------------------------------------------TITT 181
PLWR ++ TT
Sbjct: 131 PLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTT 190
Query: 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDAN 240
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN
Sbjct: 191 SPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDAN 250
Query: 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 300
+ + A++ + +L E E+P DD G + I + V V+ E ++
Sbjct: 251 QRWDVGPAIDWMRQLAEFD--IAWIEEPTSPDDVLGH---AAIRQGITPVPVSTGEHTQN 305
Query: 301 LDDVKKIVKGNLADVINIKLAKV-GVLGALEI 331
K++++ D+I I A+V GV L I
Sbjct: 306 RVVFKQLLQAGAVDLIQIDAARVGGVNENLAI 337
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 53/293 (18%), Positives = 98/293 (33%), Gaps = 72/293 (24%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA-------MAL 126
+++ + G G+GE + K +E +V E P
Sbjct: 27 VKLVTACGITGYGEIYNATFGP-----DLVAKMAE--DVFARQFAGEDPHHIEKLWHKTY 79
Query: 127 GSVF-----GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT--- 178
G+ + V G+L + +EMA D + K+ P + L GG +
Sbjct: 80 GAGYTQRPDVTVMGVL------------SGLEMACWDIIGKAAGKPAYELLGGKVHERLR 127
Query: 179 -------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------ 213
D AAE A+K QGFT +K
Sbjct: 128 SYTYLYPTDGDVYPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPS 187
Query: 214 -KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271
++L+ + IR AV + + + + A + +L P+ FE+P+
Sbjct: 188 LEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYD--PLWFEEPIPP 245
Query: 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ E + V + VA E + + ++++ A ++ + L +VG
Sbjct: 246 EKPEDMAEV----ARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVG 294
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 6e-20
Identities = 52/286 (18%), Positives = 98/286 (34%), Gaps = 56/286 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
+++ G G GEA + V ++K + +L E P + +
Sbjct: 26 VKVSTDEGIYGLGEAGIAYGV-GGSAAAGILK--DYAALLIGEDPFNTEAIWEKLFKKTF 82
Query: 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------- 178
+G G + +A ++A D K++++P+++L GG +
Sbjct: 83 WGQGGGTVIFS-------GISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQF 135
Query: 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------------KNLKED 219
E AE A K +G+ +K+ V + +K
Sbjct: 136 GWGKERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIG 195
Query: 220 IEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
+E + AIR AV PD I++ + A++ + + E +E+ + L
Sbjct: 196 VERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFN--IFFYEEINTPLNPRLLK 253
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
K K + +A+ E S ++ DVI L G
Sbjct: 254 EA----KKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCG 295
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 9e-20
Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 61/291 (20%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA--------MALGSV 129
IR+ +G G GE + +++ + ++ E P +
Sbjct: 30 IRVNTDSGLSGIGEVGLAYGA-GAKAGVGIIR--DLAPLIVGEDPLNIEKIWEFFFRKTF 86
Query: 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT----------- 178
+G+ G +A+++AL D K + +P+++L GG +N
Sbjct: 87 WGMGGG--NVFYAG-----MSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQF 139
Query: 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------K 214
D +V+P E AE A G+ +K+
Sbjct: 140 GWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLAD 199
Query: 215 NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
LK + A+R A+ D+ I++ + A++ + + + L+E+P+H +
Sbjct: 200 QLKMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYR--IFLYEEPIHPLN 257
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + V + +A E + +++++ V L G
Sbjct: 258 SDNMQKV----SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 60/284 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+R+ G G G A A +V ++ M + + +
Sbjct: 47 VRVTTEQGITGHGCATFQQRPLA---VKTLVDEYLQPLMIGRDANNIEDLWQMMNVNAYW 103
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
+ + + V+MAL D + MPL++LFGG S I
Sbjct: 104 RNGPLMNNAI-------------SGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHA 150
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLKEDIE 221
+ QG+ ++ ++G + + +E
Sbjct: 151 SGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVE 210
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+ A+R + D +E PQ+AV++ ++L P E + L V
Sbjct: 211 MFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQ--PYFIEDILPPQQSAWLEQV 268
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + V +A E + + ++ D I ++++G
Sbjct: 269 ----RQQSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIG 308
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 4e-19
Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 60/284 (21%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
+ +E + G G+G A A MV ++ ++ M + + +
Sbjct: 26 VVVETNEGVTGFGCATFQQRPLA---VKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYW 82
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
+ + + V+MAL D AK MPL +LFGG S I
Sbjct: 83 RNGPVINNAI-------------SGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHA 129
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLKEDIE 221
+ +L + ++G+ ++ ++G + + +
Sbjct: 130 TSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLT 189
Query: 222 VLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+ +++R + D +E P +A++ +++ + P E + + E L ++
Sbjct: 190 MFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYK--PYFIEDILPPNQTEWLDNI 247
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + VS+ E + ++ K ++ D I ++++G
Sbjct: 248 ----RSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIG 287
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-19
Identities = 52/300 (17%), Positives = 107/300 (35%), Gaps = 67/300 (22%)
Query: 55 PLNVPLIAPFTIATSR----LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110
++ P SR ++ + + + IE ++G VG+ P
Sbjct: 41 DISTPASKWEQYKKSRTSWGINVLGSFLVEIEATDGTVGFATGFGGPPA----------- 89
Query: 111 ASEACEVLK-----ESP--------AMALGSVF----GVVAGLLPGHQFASQLKVRAAVE 153
+ + P M S+F G+ ++ + ++
Sbjct: 90 CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVI------------SVID 137
Query: 154 MALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKV 212
+AL D + K + P++RL GG + + + E + GF K+ +
Sbjct: 138 LALWDLLGKVRNEPVYRLIGGATKE-----RLDFYCTGPEPTA----AKAMGFWGGKVPL 188
Query: 213 G-------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264
+ L++++E LR R AV PD ++D +E+++ ++
Sbjct: 189 PFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLN--INW 246
Query: 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+E+ + DD +G + I + V E S +K+V+G D+I + +G
Sbjct: 247 WEECLSPDDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLG 303
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 9e-19
Identities = 40/280 (14%), Positives = 82/280 (29%), Gaps = 55/280 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESP----------- 122
+++ NG G GEA P + + + P
Sbjct: 34 VKVTDENGVYGLGEADGSPDAIL--AYANIETEHKWLTNITEKAIGRLPIEINAIWDAMY 91
Query: 123 --AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-- 178
G + L + ++MAL D K + +P ++L GG +
Sbjct: 92 DATQWQGMRGLGMFAL-------------SGIDMALYDLAGKQLGVPAYQLLGGTNKDKV 138
Query: 179 --------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----NLKEDIEVLRAI 226
V+ A L K + +K+ V + KE LR +
Sbjct: 139 HPYLTLYPAIPVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLREL 198
Query: 227 R-AVHPDSSFILDANEGY-KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284
R + D+ ++D + E +L + ++ E + DD G +
Sbjct: 199 RGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLE--LYFAEATLQHDDLSGHAKL---- 252
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + E + + ++ + ++ + G
Sbjct: 253 VENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCG 292
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 8e-18
Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 46/213 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNT------------------ITTDITIPIVSPA 191
+ +E AL D K +P++RL GG S
Sbjct: 92 SGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGGLFEEGSNE 151
Query: 192 EAAELASKYRKQGFTTLKLKVG-----------------KNLKEDIEVLRAIR-AVHPDS 233
E +A + ++GF +KL V + + + + A+R AV P+
Sbjct: 152 EYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEV 211
Query: 234 SFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+D + + ++ + + + E+P ++ + L V +
Sbjct: 212 EVAIDMHGRFDIPSSIRFARAMEPFG----LLWLEEPTPPENLDALAEV----RRSTSTP 263
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ A E+ + D +++ D + +AK G
Sbjct: 264 ICAGENVYTRFDFRELFAKRAVDYVMPDVAKCG 296
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 53/292 (18%), Positives = 95/292 (32%), Gaps = 79/292 (27%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPA-------MALGSVF 130
+++ G VGW E TA+++ + + L S A
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPG---VTAVIE--QLGKRLVGASVMEHERFFAEAYCLTR 77
Query: 131 ----GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG------------ 174
GVV+ + A+E AL+DA AK++++P + L GG
Sbjct: 78 PATGGVVSEGI------------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSH 125
Query: 175 ---VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------ 213
P+ A + R++ F +K +
Sbjct: 126 CPTWRINHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPF 185
Query: 214 --------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264
K L+ L A+R PD +LD N KP+ +++L +L +
Sbjct: 186 QPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFD--LFW 243
Query: 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
E +GL +V ++ +++ E+ + + K N DV
Sbjct: 244 VEIDS--YSPQGLAYV----RNHSPHPISSCETLFGIREFKPFFDANAVDVA 289
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 75/294 (25%)
Query: 85 NGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF---GVV 133
G G G A + A + + A ++ + PA A+ + V+
Sbjct: 54 PGLYGLGCATFTQRIYA---VQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVM 110
Query: 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAE 192
L + ++MAL D K +P++ L GG I + E
Sbjct: 111 NNAL------------SGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVE 158
Query: 193 AAELASKYRKQGFTTLKLKVG--------------------------------------- 213
+ A ++G+ ++ ++G
Sbjct: 159 VEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFD 218
Query: 214 --KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
K + +R + + DA+E P A+ + + L E PV
Sbjct: 219 PEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQ--LFFLEDPVA 276
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
++ E L + + + +A E ++++ K ++ L D I ++ +G
Sbjct: 277 PENTEWLKML----RQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIG 326
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 79/298 (26%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I G G G+A + + + ++ ++ P G+ +
Sbjct: 42 LKIVTDQGIYGIGDATLNGREKS---VVSYLEDYLIPVLIGRDPQQIEDIWQFFYRGAYW 98
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP 186
+ L AA+++AL D AK +MPL++L GG S I
Sbjct: 99 RRGPVGMTAL-------------AAIDVALWDIKAKLANMPLYQLLGGKSRE-----RIL 140
Query: 187 I------VSPAEAAELASKYRKQGFTTLKLKVG--------------------------- 213
E K + +G+ ++++ G
Sbjct: 141 SYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSV 200
Query: 214 ------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266
K L +V A+R PD + D + P EA + + L E
Sbjct: 201 EVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYH--LFWME 258
Query: 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
V ++ E + + +A E S+ D +++++ D I + G
Sbjct: 259 DAVPAENQESFKLI----RQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 47/293 (16%), Positives = 92/293 (31%), Gaps = 69/293 (23%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + ++ ++ GS +
Sbjct: 43 LKITTEDGITGVGDATLNGRELSV---VSFLQDHMVPSLIGRDAHQIEDIWQFFYRGSYW 99
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
+ L AAV+MAL D K +P+++L GG T +T
Sbjct: 100 RGGPVAMTAL-------------AAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHA 146
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG-------------------------------- 213
+ + A KY+ G+ ++L+ G
Sbjct: 147 NGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWST 206
Query: 214 -KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271
K L ++ R + D + D + P EA + + L E V
Sbjct: 207 AKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYR--LFWLEDSVPA 264
Query: 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
++ G + + +A E + D K++++ L D + + G
Sbjct: 265 ENQAGFRLI----RQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAG 313
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 55/293 (18%), Positives = 93/293 (31%), Gaps = 69/293 (23%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++IE G G G+A + + A ++ A ++ P + G+ +
Sbjct: 36 LKIETDQGVYGIGDATLNGRELSV---VAYLQEHVAPCLIGMDPRRIEDIWQYVYRGAYW 92
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
+ + AAV+MAL D AK MPL++L GG S I
Sbjct: 93 RRGPVTMRAI-------------AAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHA 139
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG-------------------------------- 213
AE E Y G+ ++ + G
Sbjct: 140 NGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDT 199
Query: 214 -KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271
K L ++ +R D + D + Y PQEA + + L E
Sbjct: 200 RKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQ--LFWLEDCTPA 257
Query: 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
++ E V + +A E ++ D K +++ L D I + G
Sbjct: 258 ENQEAFRLV----RQHTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAG 306
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 53/220 (24%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNT----------------------------ITT 181
+AV++AL D + +PL GG + T
Sbjct: 89 SAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGSAELSTG 148
Query: 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIR- 227
+ +A LA +G+ +K+ +LK+ +E R IR
Sbjct: 149 PYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRA 208
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHR-DDWEGLGHVSHIA 284
AV + + + + A + L Y + E P+ + D+ + +
Sbjct: 209 AVGQRIEIMCELHSLWGTHAAARICNALADYG----VLWVEDPIAKMDNIPAVADL---- 260
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+ + + E+ +++ + D + + L G
Sbjct: 261 RRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCG 300
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 48/308 (15%), Positives = 87/308 (28%), Gaps = 93/308 (30%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-----ESPA--------MA 125
+ + G G GE V E + P +
Sbjct: 20 VLVHTDEGITGLGETFFGAETVE-----TYVH-----EYIAPRVIGRDPLQIDLLAQDLV 69
Query: 126 LGSVFG----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT--- 178
F V G +A ++AL D K+ + P+ +L GG S
Sbjct: 70 GYLGFRSSGAEVRGN-------------SAFDIALWDIFGKATNQPIAQLLGGFSRREIR 116
Query: 179 -------------------------ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213
D A ELA + G T +K+
Sbjct: 117 TYNTCAGTEYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPF 176
Query: 214 --------------KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--Y 256
+LK +E IR AV +++ + ++ A+++ + L Y
Sbjct: 177 DAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPY 236
Query: 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
+ E P+ D L ++A E+ S + +++ A V+
Sbjct: 237 Q----TFWHEDPIKMDSLSSLTRY----AAVSPAPISASETLGSRWAFRDLLETGAAGVV 288
Query: 317 NIKLAKVG 324
+ ++ G
Sbjct: 289 MLDISWCG 296
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 50/297 (16%), Positives = 98/297 (32%), Gaps = 75/297 (25%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA--------MALGSVF 130
++I +G G G+A + + + +++ G+ +
Sbjct: 42 LKITTDSGLTGLGDATLNGRELP---VASYLNDHVCPQLIGRDAHQIEDIWQYFYKGAYW 98
Query: 131 G----VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITI 185
++ + +AV+MAL D AK+ +MPL++L GG S T +
Sbjct: 99 RRGPVTMSAI-------------SAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHT 145
Query: 186 PIVSPAEAAELASKYRKQGFTTLKLKVG-------------------------------- 213
S E + +K+R QGF ++++ G
Sbjct: 146 TGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLW 205
Query: 214 ---KNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQ 267
K L ++ A+R + + D + P EA + + Y E
Sbjct: 206 STEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYR----LFWMED 261
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
P ++ + + +A E S+ D K++++ L D I + G
Sbjct: 262 PTPAENQACFRLI----RQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAG 314
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 69/462 (14%), Positives = 122/462 (26%), Gaps = 177/462 (38%)
Query: 41 TQTFTVDVQRAEN-----RPLNVPLIAPFT---IATSRLDQVENVAIRIELSNGCVGWGE 92
T+ + R N NV + P+ A L +NV I +G +G G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGK 163
Query: 93 APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAV 152
+ A + C K M +F + + +
Sbjct: 164 T-WV--------------ALDVCLSYKVQCKMDFK-IFWL--------NLKNCNSPETVL 199
Query: 153 EMALIDAVAKSVSMPLWRLFGGVSNTITT--DITIPIVSPAEAAE------LASK-YRK- 202
EM L +L + T+ D + I + + L SK Y
Sbjct: 200 EM-------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 203 -------------QGF--------TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE 241
F TT +V + A + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTT----------RFKQVTDFLSAATTTHISLDHHSM 296
Query: 242 GYKPQEAVEVLEKLYEM----------GVTPVLF--------EQPVHRDDWEGLGHVSHI 283
P E +L K + P + D+W+ H+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HV 350
Query: 284 AKDKFGVSVAADESCRSLD--DVKKIVKGNLA----DVINIKLAKVGVLGAL-------- 329
DK ++ + S L+ + +K+ L+ +I +L +
Sbjct: 351 NCDK--LTTIIESSLNVLEPAEYRKMFD-RLSVFPPSA-HIPTI---LLSLIWFDVIKSD 403
Query: 330 -EII--EVVRAS--------------GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-- 370
++ ++ + S + L + +E A+ H S + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSI-VDHYNIPKT 458
Query: 371 -DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411
D D + P LD Y Y GH H NI
Sbjct: 459 FDSDDLI----PPYLDQY-----FYSHI---GH----HLKNI 484
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.96 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.95 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.37 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.25 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.17 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.07 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.05 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.04 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.95 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.95 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.62 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.61 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.44 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.44 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.33 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.77 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.58 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.53 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.05 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.05 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.95 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 95.71 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 95.12 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 94.81 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.78 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 93.94 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.76 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.3 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 93.17 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 93.17 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.09 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 92.85 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 92.25 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 91.82 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.67 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 91.15 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 90.98 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 90.85 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 90.72 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.67 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 90.09 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 90.08 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 89.6 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 89.59 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 89.43 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 89.3 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 89.28 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 88.85 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 88.39 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 88.14 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 88.05 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 86.87 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 86.62 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 86.23 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 86.17 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 85.81 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 85.79 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 85.57 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 85.41 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 85.15 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 84.97 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.68 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 83.94 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 83.93 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 83.7 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 83.47 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 82.18 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 82.18 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 81.98 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 81.28 | |
| 3n2t_A | 348 | Putative oxidoreductase; aldo/keto reductase super | 80.59 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 80.47 |
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-78 Score=605.70 Aligned_cols=357 Identities=23% Similarity=0.354 Sum_probs=334.1
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|+|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+.+++|+.+.+...+++ +.|.++|++
T Consensus 1 m~MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G~d 80 (379)
T 3r0u_A 1 MVSKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSD 80 (379)
T ss_dssp -CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTTCB
T ss_pred CCCEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcCCC
Confidence 5699999999999999999999999999999999999999999999999998766777877766666665 789999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
+.+++.+|+.|++...++ ..|++||||||||++||.+|+|||+||||.+++|++|++++..+++++.++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~-----~~A~said~ALwDl~gK~~g~Pv~~LLGg~r~~v~~y~t~g~~~~e~~~~~a~~~~~ 155 (379)
T 3r0u_A 81 LSDYKQTLELAFKKVMFN-----SAAKMAIDLAYHDLLAKEQDISVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVE 155 (379)
T ss_dssp GGGHHHHHHHHHTTCSSC-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEBCEEECCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHH
Confidence 999999999998754433 248999999999999999999999999999889999999999999999999999999
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc--CCCCCceeecCCCCCCHHHHHH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~--~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+||++||+|+|.++++|++++++||++ ++++.|++|+|++|++++|++++++|++ +++ .|||||++++|++++++
T Consensus 156 ~Gf~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l--~~iEeP~~~~d~~~~~~ 233 (379)
T 3r0u_A 156 ANFTAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNV--EIIEQPVKYYDIKAMAE 233 (379)
T ss_dssp TTCCEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCE--EEEECCSCTTCHHHHHH
T ss_pred cCCCEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCc--EEEECCCCcccHHHHHH
Confidence 999999999999999999999999998 6799999999999999999999999999 665 69999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++
T Consensus 234 l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~ 309 (379)
T 3r0u_A 234 ITK----FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATA 309 (379)
T ss_dssp HHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHH
T ss_pred HHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCCCccHHHHHHHH
Confidence 975 67899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCC-CCCcccccCCCCCC
Q 015161 359 HLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIA 412 (412)
Q Consensus 359 hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~pGlG~~ld~~~~~ 412 (412)
|++++ ||+.++|++++..+.+|++.++++++||++.+|+ +||||+|+|+|.|+
T Consensus 310 hlaaa-p~~~~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLGveld~~~~~ 363 (379)
T 3r0u_A 310 SFALA-EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFGFNLAENLYF 363 (379)
T ss_dssp HHHHH-TTCCCBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTSCCCHHHHTC
T ss_pred HHHhC-CCCCeeecCchhhhhhccccCCceEECCEEEcCCCCCccceeECHHHHh
Confidence 99999 9999999999988888999999999999999999 89999999999875
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-77 Score=596.54 Aligned_cols=356 Identities=27% Similarity=0.454 Sum_probs=335.9
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.++|+++.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~d~~~ 80 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLD 80 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCCChhh
Confidence 89999999999999999999999999999999999999999999999998777777877766666778999999999999
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCee-eeceeecCCCHHHHHHHHHHHHHcC
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI-TTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i-~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
++.+|+.|++.+.++. .|++||||||||++||.+|+|||+||||.++++ ++|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~~G 155 (368)
T 3q45_A 81 IVSNSLLMDAIIYGNS-----CIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNG 155 (368)
T ss_dssp HHHHHHHHHHHCSCCH-----HHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeeeeeEEEecCCCHHHHHHHHHHHHHcC
Confidence 9999999988765542 489999999999999999999999999998889 9999999999999999999999999
Q ss_pred CCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHH
Q 015161 205 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283 (412)
Q Consensus 205 f~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 283 (412)
|++||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++|++
T Consensus 156 ~~~~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~- 232 (368)
T 3q45_A 156 FEIIKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKIRQ- 232 (368)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCC--SCEECCBCGGGGGGHHHHHH-
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCC--CEEECCCChhHHHHHHHHHh-
Confidence 9999999999999999999999997 7999999999999999999999999999997 49999999999999999975
Q ss_pred hhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 284 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++|+++
T Consensus 233 ---~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaa 309 (368)
T 3q45_A 233 ---ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVAL 309 (368)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHT
T ss_pred ---hCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCceecccCCcccccCCCCCceeeeCc-EEeeCCCCCcccccCCCCCC
Q 015161 363 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGA-VYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 363 a~~~~~~~e~~~p~~~~~d~~~~~~~~~~G-~~~~p~~pGlG~~ld~~~~~ 412 (412)
++||+.++|+++++.+.+|++.+++.+++| ++.+|++||||+++|++.++
T Consensus 310 a~p~~~~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~~d~~~l~ 360 (368)
T 3q45_A 310 VSKTICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGYQKDYLS 360 (368)
T ss_dssp TCTTEEEECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEEECTTTGG
T ss_pred cCCCCceeccccHHhhhhccccCCceecCCeEEEcCCCCccceeeCHHHHH
Confidence 999999999999988888998888899998 99999999999999999874
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-78 Score=605.52 Aligned_cols=354 Identities=36% Similarity=0.579 Sum_probs=316.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.|+|+++.+
T Consensus 27 mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G~d~~~ 106 (393)
T 3u9i_A 27 TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEGADVRE 106 (393)
T ss_dssp TBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGGG
T ss_pred cEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcCCCcCC
Confidence 89999999999999999999999999999999999999999999999998877778887777777778999999999999
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCC
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 205 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 205 (412)
++.+|+.|++...++ ..|++||||||||++||.+|+|||+||||..+++++|++++..+++++.+++++++++||
T Consensus 107 ~~~~~~~l~~~~~~~-----~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~Gf 181 (393)
T 3u9i_A 107 WRRIALALPALPGMT-----GSARCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGV 181 (393)
T ss_dssp HHHHHHHGGGSTTCC-----HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEECCEEEC---CHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCcc-----HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEEecCCCHHHHHHHHHHHHHcCC
Confidence 999999997654432 248999999999999999999999999999899999999999999999999999999999
Q ss_pred CEEeEecCCC---------hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HcCCCCCceeecCCCCCCH
Q 015161 206 TTLKLKVGKN---------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 206 ~~~KiKvG~~---------~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~l~~~~iEeP~~~~d~ 274 (412)
++||+|+|.+ +++|+++|++||++.|++.|++|+|++|++++|++++++| +++++ .|||||++++|+
T Consensus 182 ~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~ 259 (393)
T 3u9i_A 182 TTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVP--ALFEQPVAKDDE 259 (393)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCC--SEEECCSCTTCT
T ss_pred CeEEEEeCCCcccccccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCCCcH
Confidence 9999999965 8899999999999988999999999999999999999999 88887 599999999999
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++|||+||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||+|+
T Consensus 260 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~~es~ig 334 (393)
T 3u9i_A 260 EGLRRLTA----TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGGMVESLLA 334 (393)
T ss_dssp THHHHHHH----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHH
T ss_pred HHHHHHHh----hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHH
Confidence 99999975 689999999999999999999999999999999999 8 99999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCC-CCCcccccCCCCC
Q 015161 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNI 411 (412)
Q Consensus 354 ~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~pGlG~~ld~~~~ 411 (412)
+++++||++++||+.++|+++++.+.+|++.++++++||++.+|+ +||||+++|+++|
T Consensus 335 ~aa~~hlaaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~l 393 (393)
T 3u9i_A 335 MTVSACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYHGGTIDLTLIEAGHGVTPRSPAL 393 (393)
T ss_dssp HHHHHHHHHHHCCEEEECCCGGGSBSCCCEEESCEEETTEEECTTCCSBTCEEEC----
T ss_pred HHHHHHHHhcCCCCCeecccchhhhhhcccCCCceeECCEEECCCCCCcCCcccCcccC
Confidence 999999999999999999999988888999888999999999999 9999999999975
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-78 Score=604.04 Aligned_cols=357 Identities=40% Similarity=0.618 Sum_probs=331.3
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
.|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.|+|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDAR 83 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGG
T ss_pred CCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcCCCcc
Confidence 48999999999999999999999999999999999999999999999999887777888777777777889999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
+++.+|+.|+....++. ..|++||||||||++||..|+|||+||||..+++++|++++..+++++.+++++++++|
T Consensus 84 ~~~~~~~~l~~~~~~~~----~~A~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G 159 (389)
T 3s5s_A 84 AWRAVARALREASGGGA----GAARCAIETAILDALTKRAGMPLWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMG 159 (389)
T ss_dssp GHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHTTTCBHHHHTTCSCSEEECCEEECSSCSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhccCh----HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEeeecCCCHHHHHHHHHHHHHcC
Confidence 99999999987655443 14899999999999999999999999999988999999999999999999999999999
Q ss_pred CCEEeEecCCC-hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 205 FTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 205 f~~~KiKvG~~-~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
|++||+|+|.+ +++|+++|++||++.|++.|++|+|++|++++|++++++| +++++ .|||||++++|++++++|+
T Consensus 160 ~~~iKlKvg~~~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~ 237 (389)
T 3s5s_A 160 FRALKVKVGGRLAASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADV--ALLEQPVPRDDWDGMKEVT 237 (389)
T ss_dssp CCEEEEECCGGGTTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEE--EEEECCSCTTCHHHHHHHH
T ss_pred CCeEEEEecCCChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCcccHHHHHHHH
Confidence 99999999965 8899999999999988999999999999999999999999 78876 5999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||+|++++++||
T Consensus 238 ~----~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hl 312 (389)
T 3s5s_A 238 R----RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTASACF 312 (389)
T ss_dssp H----HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHH
T ss_pred h----hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHH
Confidence 5 578999999999999999999999999999999999 9 999999999999999999999999999999999999
Q ss_pred HccCCCCceecccCCcccccCCCCCceeeeCcEEeeCC-CCCcccccCCCCCC
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWDNIA 412 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~-~pGlG~~ld~~~~~ 412 (412)
++++||+.++|+++++.+.+|++.++++++||++.+|+ +||||+++|||.++
T Consensus 313 aaa~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~~~ 365 (389)
T 3s5s_A 313 AAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHGVTPQRRSPA 365 (389)
T ss_dssp HHHHCCEEEECCCGGGGBSCCCEECSCEEETTEEECTTCCSBTCCEEC-----
T ss_pred HhhCCCCCeeeccchhhhhhccccCCceeECCEEECCCCCCcCCcccCHHHHh
Confidence 99999999999999988888999888999999999999 99999999999874
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-76 Score=588.22 Aligned_cols=351 Identities=36% Similarity=0.596 Sum_probs=323.5
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
+|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+.+.+++|+...+...++.+.|.++|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVR 83 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence 48999999999999999999999999999999999999999999999999988888898877777777899999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
+++.+|+.|++.+.++. .|++||||||||++||..|+|||+||||..+++++|++++..+++++.+++++++++|
T Consensus 84 ~~~~~~~~l~~~~~~~~-----~a~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G 158 (365)
T 3ik4_A 84 GWRKLAAMLDHAEHEAA-----AARCGLEMAMLDALTRHYHMPLHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARG 158 (365)
T ss_dssp GHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEBCEEECCSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcC
Confidence 99999999987654432 4899999999999999999999999999989999999999999999999999999999
Q ss_pred CCEEeEecCCC-hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 205 FTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 205 f~~~KiKvG~~-~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
|++||+|+|.+ +++|+++|+++|++.|++.|++|+|++|++++|++++++| +++++ .|||||++++|++++++|+
T Consensus 159 ~~~iK~Kvg~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~ 236 (365)
T 3ik4_A 159 IKSIKVKTAGVDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPM--VLFEQPLPREDWAGMAQVT 236 (365)
T ss_dssp CCCEEEECCSSCHHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCc--eEEECCCCcccHHHHHHHH
Confidence 99999999965 9999999999999988899999999999999999999999 88876 5999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||++++..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|||+||+|+.++++||
T Consensus 237 ~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hl 311 (365)
T 3ik4_A 237 A----QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANL 311 (365)
T ss_dssp H----HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHH
T ss_pred h----hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHH
Confidence 5 578999999999999999999999999999999999 8 999999999999999999999999999999999999
Q ss_pred HccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
++++||+.++|+++++.+.+|++.++++++||++.+|++||||+|+.
T Consensus 312 aaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~~ 358 (365)
T 3ik4_A 312 AAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLE 358 (365)
T ss_dssp HHHHCCEEEECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCEEEC
T ss_pred HHhCCCCCeeccccchhhhhcccCCCceeECCEEECCCCCccCCCCC
Confidence 99999999999999988889999888999999999999999999875
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-76 Score=588.49 Aligned_cols=355 Identities=26% Similarity=0.386 Sum_probs=333.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++|++.||.++.++++.++.++|||+|++|++||||+.+. +.|++|+.+.+...+++ +.|.++|++
T Consensus 6 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 85 (383)
T 3i4k_A 6 LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLAPVLIGRA 85 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTHHHHTTSB
T ss_pred CEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhhHHHcCCC
Confidence 999999999999999999999999999999999999999999999999876 56788887777766765 889999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+.+++.+|+.|++.+.++. .|++|||+||||++||.+|+|||+||||. +++||+|++++..+++++.+++++++
T Consensus 86 ~~~~~~~~~~l~~~~~~~~-----~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~ 160 (383)
T 3i4k_A 86 VSELAGIMADLERVVARAR-----YAKAAVDVAMHDAWARSLNVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERI 160 (383)
T ss_dssp GGGHHHHHHHHHHHCCSCH-----HHHHHHHHHHHHHHHHHTTSBGGGGTTCCSCSEEEBCEEECSCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeEEEeEEeeCCCHHHHHHHHHHHH
Confidence 9999999999988766542 48999999999999999999999999996 57899999999999999999999988
Q ss_pred Hc-CCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 202 KQ-GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 202 ~~-Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
++ ||++||+|+|. ++++|++++++||++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|+++++
T Consensus 161 ~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~ 238 (383)
T 3i4k_A 161 EEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLR 238 (383)
T ss_dssp HHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTC--CEEESCSCTTCHHHHH
T ss_pred HhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHH
Confidence 87 99999999996 899999999999998 7889999999999999999999999999997 4999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+++.+++
T Consensus 239 ~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~ 314 (383)
T 3i4k_A 239 EITR----RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAAS 314 (383)
T ss_dssp HHHH----HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECCSCCCHHHHHHH
T ss_pred HHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCCCCccHHHHHHH
Confidence 9975 57899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++++||+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 315 ~hlaaa~p~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (383)
T 3i4k_A 315 LQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPGLGVDVDMDKV 369 (383)
T ss_dssp HHHHHHCTTEEEEECCCHHHHBSSCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HHHHHcCCCCCccccccchhhhhhhccCCCceeeCCEEECCCCCCcceeeCHHHH
Confidence 999999999999 899988777889999999999999999999999999999875
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-76 Score=589.21 Aligned_cols=357 Identities=22% Similarity=0.329 Sum_probs=329.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g 120 (412)
|.++|++|+++.+++|++.||+++.++++.++.++|||+|++|++||||+.+. ++|++|+.+.+...+++ +.|.++|
T Consensus 4 m~~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~liG 83 (382)
T 3dgb_A 4 HASAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIG 83 (382)
T ss_dssp CTTBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTT
T ss_pred hhCeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHHHHHHhcC
Confidence 45669999999999999999999999999999999999999999999999876 34677887776666665 8999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|++.+.|+. .|++||||||||++||.+|+|||+||||. +++||+|++++..+++++.+++++
T Consensus 84 ~d~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~ 158 (382)
T 3dgb_A 84 QDASNINAAMLRLEQSIRGNT-----FAKSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQK 158 (382)
T ss_dssp SBTTCHHHHHHHHHHHCCSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeeeEEEEecCCChHHHHHHHHH
Confidence 999999999999988776542 48999999999999999999999999997 569999999888888888888888
Q ss_pred HHH-cCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHH
Q 015161 200 YRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276 (412)
Q Consensus 200 ~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~ 276 (412)
+++ +||++||+|+|. ++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|+++
T Consensus 159 ~~~~~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~ 236 (382)
T 3dgb_A 159 MLDLRRHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAG 236 (382)
T ss_dssp HHHTTSCSEEEEECCSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTC--CCEECCBCTTCHHH
T ss_pred HHHhCCCCEEEEeeCCCCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCc--CeeeCCCCccCHHH
Confidence 777 699999999995 579999999999997 7889999999999999999999999999997 49999999999999
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHH
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~ 355 (412)
+++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+++
T Consensus 237 ~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~a 312 (382)
T 3dgb_A 237 MVRLNA----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTL 312 (382)
T ss_dssp HHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHHH
T ss_pred HHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecCCCccHHHHH
Confidence 999975 67899999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 356 FAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 356 a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++||++++||+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.|
T Consensus 313 a~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 369 (382)
T 3dgb_A 313 ASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPGLGLSLDEERL 369 (382)
T ss_dssp HHHHHHTTSSCCTTCBCCCHHHHBSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHHHHHHcCCCCcceeeccchhhhhhcccCCCceeECCEEECCCCCCcCcccCHHHH
Confidence 99999999999987 888888777889999999999999999999999999999875
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-76 Score=587.41 Aligned_cols=352 Identities=26% Similarity=0.373 Sum_probs=320.2
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (412)
|||++|+++++++|++.||.++.++.+.++.++|||+|++|++||||+.+.+.+++|+.+.+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G~~~~ 80 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDIR 80 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTTCBGG
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 89999999999999999999999999999999999999999999999998777777877766666655 88999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
+++.+|+.|++.+.++. .|++|||+||||++||..|+|||+||||.++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G 155 (356)
T 3ro6_B 81 TLPRLCRELAERLPAAP-----AARAALDMALHDLVAQCLGLPLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALG 155 (356)
T ss_dssp GHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHHHTSBHHHHTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccch-----hHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEEcCCCHHHHHHHHHHHHHcC
Confidence 99999999987665442 4899999999999999999999999999988999999999999999999999999999
Q ss_pred CCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHH
Q 015161 205 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283 (412)
Q Consensus 205 f~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 283 (412)
|++||+|+|.++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++. |||||++++|++++++|++
T Consensus 156 ~~~~K~K~G~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~~- 232 (356)
T 3ro6_B 156 FRVLKVKLCGDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIE--FIEQPFPAGRTDWLRALPK- 232 (356)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCC--CEECCSCTTCHHHHHTSCH-
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCC--EEECCCCCCcHHHHHHHHh-
Confidence 9999999999999999999999997 79999999999999999999999999999974 9999999999999999875
Q ss_pred hhcccCCeEEeCCCCCCHHHHHHHHHcC-CCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHH
Q 015161 284 AKDKFGVSVAADESCRSLDDVKKIVKGN-LADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 284 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~-a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hla 361 (412)
++++||++||++++..+++++++.+ ++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++||+
T Consensus 233 ---~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hla 309 (356)
T 3ro6_B 233 ---AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAA 309 (356)
T ss_dssp ---HHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHH
T ss_pred ---cCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHH
Confidence 5789999999999999999999999 9999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCC
Q 015161 362 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409 (412)
Q Consensus 362 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~ 409 (412)
+++||+.++|+++++.+.+|++.++++++||++.+|++||||+ +|+|
T Consensus 310 aa~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv-~d~~ 356 (356)
T 3ro6_B 310 LACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL-VYPD 356 (356)
T ss_dssp HTCTTEEEECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-EC--
T ss_pred hcCCCCCeEecccchhhhhccccCCceeECCEEECCCCCeeee-cCCC
Confidence 9999999999999888888999888999999999999999999 9986
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=585.98 Aligned_cols=355 Identities=25% Similarity=0.354 Sum_probs=315.0
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
+|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+. ++|++|+.+.+...+++ +.|.++|+
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l~G~ 83 (381)
T 3fcp_A 4 TATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLLKGQ 83 (381)
T ss_dssp CCBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred CcEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999999999999999999876 34677877766666665 89999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHH
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 200 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~ 200 (412)
++.+++.+|+.|++.+.++. .|++||||||||++||.+|+|||+||||. +++||+|++++..+++++.++++++
T Consensus 84 d~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~ 158 (381)
T 3fcp_A 84 PADNLNALTARMNGAIKGNT-----FAKSAIETALLDAQGKALGLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKL 158 (381)
T ss_dssp BSSCHHHHHHHHHHHCCSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeEEEecCCChHHHHHHHHHH
Confidence 99999999999988766542 48999999999999999999999999997 5799999999888898888888887
Q ss_pred HH-cCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 201 RK-QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 201 ~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
++ +||++||+|+|. ++++|+++|+++|++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|++++
T Consensus 159 ~~~~G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~ 236 (381)
T 3fcp_A 159 LAEGRHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAAL 236 (381)
T ss_dssp TC----CEEEEECCSSCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC--SEEECCBCTTCHHHH
T ss_pred HHhCCCCEEEEecCCCChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCc--cceeCCCCcccHHHH
Confidence 77 699999999995 589999999999997 6789999999999999999999999999997 499999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a 356 (412)
++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++
T Consensus 237 ~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 312 (381)
T 3fcp_A 237 VRLSQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVA 312 (381)
T ss_dssp HHHHH----HSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHHHHHH
T ss_pred HHHHH----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCCCCccHHHHHH
Confidence 99975 67899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 357 AGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 357 ~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++++| +.+ +|+++++.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 313 ~~hlaaa~~-~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (381)
T 3fcp_A 313 SLHAWSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLGVELDEDKL 367 (381)
T ss_dssp HHHHHTTSC-CTTCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHHHhCC-CccccccccchhhhhhccCCCceeeCCEEECCCCCCcCcccCHHHH
Confidence 999999999 776 788888777889999999999999999999999999999875
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-75 Score=585.39 Aligned_cols=356 Identities=22% Similarity=0.295 Sum_probs=318.3
Q ss_pred eeeEEeEEEEEEEEeccccceeccCcee-eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
.+|||++|+++++++|++.||+++.+++ +.++.++|||+|++|++||||+.+.+.++ |+...+...+++ +.|.++|+
T Consensus 6 ~~mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~l~G~ 84 (385)
T 3i6e_A 6 LEQKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFT-GTPEASYAALDRYLRPLVIGR 84 (385)
T ss_dssp CCSBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCTTTT-CCHHHHHHHHHHTTHHHHTTC
T ss_pred hhcEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCCCcC-CCHHHHHHHHHHHHHHHHCCC
Confidence 4589999999999999999999999998 88899999999999999999999877666 777666667777 88999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHH
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 200 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~ 200 (412)
++.+++.+|+.|++.+.++. .|++|||+||||++||.+|+|||+||||. +++||+|++++..+++++.++++++
T Consensus 85 d~~~~~~~~~~l~~~~~~~~-----~A~said~ALwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~ 159 (385)
T 3i6e_A 85 RVGDRVAIMDEAARAVAHCT-----EAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERL 159 (385)
T ss_dssp BGGGHHHHHHHHHHHSSSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECCSSHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCcccCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999988766542 48999999999999999999999999996 5799999999888999999999999
Q ss_pred HHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 201 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+++||++||+|+|. ++++|++++++||++.+++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++
T Consensus 160 ~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~ 237 (385)
T 3i6e_A 160 RADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMAR 237 (385)
T ss_dssp HHHTCCEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCC--SCEECCSCTTCHHHHHH
T ss_pred HHcCCCEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHH
Confidence 99999999999995 6899999999999977999999999999999999999999999997 49999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+.++++
T Consensus 238 l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~ 313 (385)
T 3i6e_A 238 LRG----LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGT 313 (385)
T ss_dssp HHT----TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHH
T ss_pred HHH----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCCCCccHHHHHHHH
Confidence 974 68999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 359 HLSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 359 hlaaa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+++++||+.+ +|++.+ ..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 314 hlaaa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 368 (385)
T 3i6e_A 314 HMIAATPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKL 368 (385)
T ss_dssp HHHHTCTTEEEEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSCBCHHHH
T ss_pred HHHHhCCCCccchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCceECHHHH
Confidence 99999999988 898876 556789998899999999999999999999999875
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-75 Score=583.74 Aligned_cols=356 Identities=22% Similarity=0.333 Sum_probs=317.5
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeee-EEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVE-NVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~-~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
-+|||++|+++++++|++.||.++.++.+.++ .++|||+|++|++||||+.+.+.++ |+...+...+++ +.|.++|+
T Consensus 4 ~~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~liG~ 82 (377)
T 3my9_A 4 WDSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFT-GTPEAAFSALDIYLRPLILGA 82 (377)
T ss_dssp CCCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC------CHHHHHHHHHTTTHHHHTTC
T ss_pred ccCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCCcC-CCHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999999999998888 9999999999999999999877665 666666666776 78999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHH
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 200 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~ 200 (412)
++.+++.+|+.|++.+.++. .|++||||||||++||.+|+|||+||||. ++++|+|++++..+++++.++++++
T Consensus 83 d~~~~~~~~~~l~~~~~~~~-----~A~said~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~ 157 (377)
T 3my9_A 83 PIKRVRELMARMDKMLVGHG-----EAKAAVEMALLDILGKATGLSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAM 157 (377)
T ss_dssp BTTCHHHHHHHHHHHSCSCH-----HHHHHHHHHHHHHHHHHHTCBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCch-----hHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999988766542 48999999999999999999999999996 5799999999888999999999999
Q ss_pred HHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 201 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
+++||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|+++++
T Consensus 158 ~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~ 235 (377)
T 3my9_A 158 VPAGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP--TFIEQPVPRRHLDAMA 235 (377)
T ss_dssp TTTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC--SCEECCSCTTCHHHHH
T ss_pred HHcCCCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--CEEECCCCccCHHHHH
Confidence 99999999999995 689999999999997 7999999999999999999999999999997 4999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|+++++
T Consensus 236 ~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~ 311 (377)
T 3my9_A 236 GFAA----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAG 311 (377)
T ss_dssp HHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCEECCSHHHHHHH
T ss_pred HHHH----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCCCCCcHHHHHHH
Confidence 9975 57899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLGCFKF-IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~~~~~-~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++++||+.+ +|++++ ..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 312 ~hlaaa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 367 (377)
T 3my9_A 312 TQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGISISEASL 367 (377)
T ss_dssp HHHHHTCTTBCSCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSCCCCHHHH
T ss_pred HHHHHhCCCCccceeecCchhhhhhhccCCCceeECCEEECCCCCCCCcccCHHHH
Confidence 999999999988 898887 566789999899999999999999999999999875
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-75 Score=580.67 Aligned_cols=354 Identities=21% Similarity=0.337 Sum_probs=318.7
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (412)
|||++|+++++++|++.||.++.++++.++.++|||+|++|++||||+.+.+++++|+...+...++ .+.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d~~ 80 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIGLTLT 80 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 8999999999999999999999999999999999999999999999999888888888777777776 589999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHc-
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ- 203 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~- 203 (412)
+++.+|+.|++. .++ ..|++||||||||++||.+|+|||+||||.+++||+|++++..+++++.+++++++++
T Consensus 81 ~~~~~~~~l~~~-~~~-----~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~ 154 (367)
T 3dg3_A 81 EREVAHTRMART-VGN-----PTAKAAIDMAMWDALGQSLRLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETY 154 (367)
T ss_dssp CHHHHHHHHTTS-CSC-----HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc-cCc-----hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 999999999764 333 2489999999999999999999999999977899999999999999999999999999
Q ss_pred CCCEEeEecCCChh-HHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 204 GFTTLKLKVGKNLK-EDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 204 Gf~~~KiKvG~~~~-~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
||++||+|+|.++. +|++++++||++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++|+
T Consensus 155 G~~~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 232 (367)
T 3dg3_A 155 GINTFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRLV 232 (367)
T ss_dssp CCCEEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCC--SCEESCSCTTSHHHHHHHH
T ss_pred CccEEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CEEECCCCcccHHHHHHHH
Confidence 99999999998777 999999999997 7999999999999999999999999999997 4999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hla 361 (412)
+ ++++||++||++++..+++++++.+++|++|+|++++|++++++++++|+++|+++++|||++|+|+.++++||+
T Consensus 233 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Git~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 308 (367)
T 3dg3_A 233 G----QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFG 308 (367)
T ss_dssp H----HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTTHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHH
T ss_pred H----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhHHHHHHHHHHHHHcCCeEEECCcCCcHHHHHHHHHHH
Confidence 5 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-Cc-eecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 362 AGLGC-FK-FIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 362 aa~~~-~~-~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++| +. .+++++++.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 309 aa~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 360 (367)
T 3dg3_A 309 TAFERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGIEIDPDKL 360 (367)
T ss_dssp TTCHHHHTSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSCCBCHHHH
T ss_pred HhCCcccCcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCceECHHHH
Confidence 99983 33 3678888778889999999999999999999999999999875
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-74 Score=575.58 Aligned_cols=355 Identities=20% Similarity=0.353 Sum_probs=322.7
Q ss_pred eeeEEeEEEEEEEEeccccceeccCc--eeeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~--~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
|+|||++|+++++++|++.||+++.+ +.+.++.++|||+|++|++||||+.+. +.|+.|+...+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G 80 (378)
T 3eez_A 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLG 80 (378)
T ss_dssp --CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999987 678899999999999999999999876 667777766666667789999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|++.+.|+. .|++|||+||||++||.+|+|||+||||. ++++|+|.+++..+++++.+.+++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gk~~g~Pl~~LlGg~~r~~v~~~~~~~~~~~e~~~~~a~~ 155 (378)
T 3eez_A 81 LDPRRLLDVERAMDIALPGHL-----YAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDR 155 (378)
T ss_dssp SCTTCHHHHHHHHHHHSSSCH-----HHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCeEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999988766543 48999999999999999999999999997 478999999999999999999999
Q ss_pred HHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
++++||++||+|+|.++++|++++++||++ ++++.|++|+|++|++++|++++++|+++++ |||||++ |+++++
T Consensus 156 ~~~~G~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iEqP~~--~~~~~~ 230 (378)
T 3eez_A 156 YRQRGYVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQPGE--TLDDIA 230 (378)
T ss_dssp HHHTTCCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC---CEECCSS--SHHHHH
T ss_pred HHhCCCCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe---EEecCCC--CHHHHH
Confidence 999999999999999999999999999997 6899999999999999999999999999974 9999998 799999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+.+++
T Consensus 231 ~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~es~i~~aa~ 306 (378)
T 3eez_A 231 AIRP----LHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMATGGSVLADAEA 306 (378)
T ss_dssp HTGG----GCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHH
T ss_pred HHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCCCCHHHHHHH
Confidence 8874 68999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCc-eecccCCcccccCCCCC-ceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 358 GHLSAGLGCFK-FIDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 358 ~hlaaa~~~~~-~~e~~~p~~~~~d~~~~-~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+||+++++|+. +.+++++..+.+|++.+ +++++||++.+|++||||+++|+++|+
T Consensus 307 ~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~ 363 (378)
T 3eez_A 307 LHLAATIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALG 363 (378)
T ss_dssp HHHHHTSCGGGBCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCCCTTSSC
T ss_pred HHHHHhCCCccceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCcccCHHHHh
Confidence 99999999854 46778777777888887 789999999999999999999999874
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-74 Score=577.56 Aligned_cols=355 Identities=19% Similarity=0.310 Sum_probs=324.3
Q ss_pred eeeEEeEEEEEEEEeccccc-eeccCc-eeeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAP-FTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~p-f~~a~~-~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
|+|||++|+++++++|++.| |+++.+ +.+.++.++|||+|++|++||||+.+. +.|++|+...+...++.+.|.|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l~G 80 (386)
T 3fv9_G 1 MSLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILG 80 (386)
T ss_dssp --CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHhCC
Confidence 67999999999999999999 999955 788899999999999999999999876 567777777666667789999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|++.+.|+. .|++||||||||++||.+|+|||+||||. ++++|+|++++..+++++.+++++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gk~~g~Pv~~LLGg~~~~~v~~y~s~~~~~~e~~~~~a~~ 155 (386)
T 3fv9_G 81 MDPRQHDRIWDRMRDTLKGHR-----DARAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVAR 155 (386)
T ss_dssp SCTTCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCBCEEEEECSCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEecCCCCHHHHHHHHHH
Confidence 999999999999988766542 48999999999999999999999999997 568999999999999999999999
Q ss_pred HHHcCCCEEeEecC-----CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCC
Q 015161 200 YRKQGFTTLKLKVG-----KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG-----~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~ 272 (412)
++++||++||+|+| .++++|+++|++||++ ++++.|++|+|++|++++|++++++| +++++ |||||++
T Consensus 156 ~~~~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i---~iEeP~~-- 230 (386)
T 3fv9_G 156 HRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDI---VLEAPCA-- 230 (386)
T ss_dssp HHHTTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCC---EEECCCS--
T ss_pred HHHCCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCc---EEecCCC--
Confidence 99999999999999 5689999999999998 79999999999999999999999999 77763 9999998
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+
T Consensus 231 ~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ 306 (386)
T 3fv9_G 231 SWAETKSLRA----RCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQ 306 (386)
T ss_dssp SHHHHHHHHT----TCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred CHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCCCCCH
Confidence 7999999874 68999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 352 LAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 352 i~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
|++++++||+++++|+.+ .+++++..+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 307 i~~aa~~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~ 368 (386)
T 3fv9_G 307 ISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGLGLRVNRDALG 368 (386)
T ss_dssp HHHHHHHHHHHTSCTTTEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBTCCEECGGGGC
T ss_pred HHHHHHHHHHHhCCCcccccccccccchhccccCCCceEECCEEECCCCCCCCceeCHHHHh
Confidence 999999999999999644 5677766667788888889999999999999999999999874
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-74 Score=570.45 Aligned_cols=345 Identities=32% Similarity=0.464 Sum_probs=325.8
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHh---HHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC---EVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~---~~l~g~~ 122 (412)
|||++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+.+.+++|+...+...++.+. |.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l~G~d 80 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFN 80 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTCCTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccccCCC
Confidence 8999999999999999999999999999999999999999999999999888788888777666667778 9999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
+.+++.+|+.|+ .++ . .|++||||||||++||.+|+|||+||||.++++|++++++..+++++.++++++++
T Consensus 81 ~~~~~~~~~~l~---~~~--~---~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 152 (354)
T 3jva_A 81 IEKIHEVMDKIS---AFA--P---AAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVK 152 (354)
T ss_dssp HHHHHHHHHHHC---SSC--H---HHHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHh---ccc--H---HHHHHHHHHHHHHHHHHcCCcHHHHhhccCCeeeeeEEeCCCCHHHHHHHHHHHHH
Confidence 999999999886 222 2 48999999999999999999999999998889999999999999999999999999
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
+||++||+|+|.+.++|++++++||++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 153 ~G~~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~ 230 (354)
T 3jva_A 153 LGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYVT 230 (354)
T ss_dssp TTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCE--EEEECCSCTTCHHHHHHHH
T ss_pred hCCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHH
Confidence 999999999998889999999999997 7999999999999999999999999999987 5999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGH 359 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~h 359 (412)
+ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+ ||++++++++|
T Consensus 231 ~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~h 306 (354)
T 3jva_A 231 S----QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAH 306 (354)
T ss_dssp H----HCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHHHHHHH
T ss_pred H----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHHHHHHH
Confidence 5 67899999999999999999999999999999999997 999999999999999999999999 99999999999
Q ss_pred HHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCC-CCccc
Q 015161 360 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGG 404 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~-pGlG~ 404 (412)
|++++||+.++|+++++.+.+|++.++++++||++.+|++ ||||+
T Consensus 307 laaa~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGv 352 (354)
T 3jva_A 307 LAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGI 352 (354)
T ss_dssp HHHHCTTEEEECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBTCB
T ss_pred HHhcCCCCCcccccchhhhhhccccCCceEECCEEEcCCCCCCCCC
Confidence 9999999999999999888899999999999999999999 99998
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-74 Score=574.59 Aligned_cols=355 Identities=24% Similarity=0.367 Sum_probs=323.8
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++||++||+++.++.+.++.++|||+| ||++||||+.+. |.+++|+.+.+...+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~liG~d 79 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999998 599999999874 55788887776666655 789999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecCCC-HHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVS-PAEAAELASKY 200 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~-~~~~~~~~~~~ 200 (412)
+.+++.+|+.|++...++. .|++||||||||++||.+|+|||+||||.. +.++++.++...+ ++++.+.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-----~A~said~AlwDl~gK~~g~Pl~~lLGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (370)
T 2chr_A 80 AFNVSGALQTMARAVTGNA-----SAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMI 154 (370)
T ss_dssp TTCHHHHHHHHHTTCSSCH-----HHHHHHHHHHHHHHHHHTTCCHHHHTTCCSCSEEEBEEEECSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhhcccccH-----HHHHHHHHHHHHHHHHhcCCccccccCCccccccceeeeeccCchhhhHHHHHHHH
Confidence 9999999999988666553 389999999999999999999999999985 5778887776654 45567777888
Q ss_pred HHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 201 RKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 201 ~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
.+.||+++|+|+| .++++|+++++++|++ ++++.||+|+|++|++++|++++++|+++++. |||||++++|+++++
T Consensus 155 ~~~g~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~d~~~~~ 232 (370)
T 2chr_A 155 ERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVGRENTQALR 232 (370)
T ss_dssp HTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCC--EEECCSCSSCHHHHH
T ss_pred hhcccceeecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCCc--eecCCCChhhhhhhh
Confidence 8899999999999 5889999999999997 89999999999999999999999999999984 999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|+.+++
T Consensus 233 ~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~~~~i~~aa~ 308 (370)
T 2chr_A 233 RLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVA 308 (370)
T ss_dssp HHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCHHHHHHH
T ss_pred HHhh----hccCCccCCccCCCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCcccHHHHHHH
Confidence 9975 68899999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 358 GHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 358 ~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+|+++++||+.+ .++++++.+.++++.++++++||++.+|++||||+++|+|+|+
T Consensus 309 ~hlaa~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~ 364 (370)
T 2chr_A 309 LQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVR 364 (370)
T ss_dssp HHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHHHH
T ss_pred HHHHHhCCCCCcccccCchhhhhhhccCCCceEECCEEECCCCCCCCceECHHHHH
Confidence 999999999887 4677787778888899999999999999999999999998763
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-73 Score=569.85 Aligned_cols=355 Identities=19% Similarity=0.288 Sum_probs=306.3
Q ss_pred eeeEEeEEEEEEEEecc-ccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcCC
Q 015161 44 FTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKES 121 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl-~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (412)
..|||++|+++++++|+ +.||.++.++.+.++.++|||+|++|++||||+.+. +.|+.|+...+...++.+.|.|+|+
T Consensus 21 ~~MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~ 100 (391)
T 4e8g_A 21 QSMKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIGA 100 (391)
T ss_dssp --CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGTTC
T ss_pred cCCEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHCCC
Confidence 44999999999999999 999999999999999999999999999999999876 6677666666666677799999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHH
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 200 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~ 200 (412)
++.+++.+|+.|+..+.|+. .|++||||||||++||.+|+|||+||||. +++||+|++++..+++++.++++++
T Consensus 101 d~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~e~~~~~a~~~ 175 (391)
T 4e8g_A 101 NPLQPLVLRRRMDGLLCGHN-----YAKAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEK 175 (391)
T ss_dssp CTTCHHHHHHHHHTTCSSCH-----HHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEECCEEECSCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHcCChHHHhcCCCCCCcEEEeEEcCCCCHHHHHHHHHHH
Confidence 99999999999987665542 48999999999999999999999999997 4689999999999999999999999
Q ss_pred HHcCCCEEeEecCC-ChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 201 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
+++||++||+|+|. ++++|+++|+++|++ + |++.|++|+|++|++++|++++++|+++++ |||||+ +|++++
T Consensus 176 ~~~G~~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~i---~iEeP~--~~~~~~ 250 (391)
T 4e8g_A 176 VAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIPF---VLEQPC--NTLEEI 250 (391)
T ss_dssp HHTTCSEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCS--SSHHHH
T ss_pred HHcCCcEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCe---EEecCC--ccHHHH
Confidence 99999999999996 899999999999996 7 999999999999999999999999999874 999996 589999
Q ss_pred HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a 356 (412)
++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++
T Consensus 251 ~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 326 (391)
T 4e8g_A 251 AAIRG----RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAA 326 (391)
T ss_dssp HHHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSSCSHHHHHH
T ss_pred HHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCCcCCCHHHHHH
Confidence 99874 68999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCceeccc-CCcccccCCCCCc-eeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 357 AGHLSAGLGCFKFIDLD-TPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 357 ~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~-~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++||++++||+.+.+.. ..-.+..+....+ +.++||++.+|++||||+++|+++|+
T Consensus 327 ~~hlaaa~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve~d~~~l~ 384 (391)
T 4e8g_A 327 CTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGITPDESLFG 384 (391)
T ss_dssp HHHHHTTSCGGGEEECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCCCCGGGTC
T ss_pred HHHHHHhCCCccccccccchhhhhhhccccCCceEECCEEECCCCCcCCCccCHHHHh
Confidence 99999999998766532 1112334444444 77899999999999999999999875
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-74 Score=575.63 Aligned_cols=354 Identities=24% Similarity=0.358 Sum_probs=325.7
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++++++|++.||++|.++.+.++.++|||+ ++|++||||+.+.+ .|++|+.+.+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 79 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999999999999 99999999998753 4777887766666665 789999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+.+++.+|+.|++.+.|+. .|++||||||||++||.+|+|||+||||. +++||+|++++..++++..++++++.
T Consensus 80 ~~~~~~~~~~l~~~~~g~~-----~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~ 154 (370)
T 1chr_A 80 AFNVSGALQTMARAVTGNA-----SAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMI 154 (370)
T ss_dssp TTCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBEEEECSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeEEEEecCCCcHHHHHHHHHHH
Confidence 9999999999988776542 48999999999999999999999999996 57999999988878777666666666
Q ss_pred H-cCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 202 K-QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 202 ~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
+ +||++||+|+|. ++++|++++++||++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|+++++
T Consensus 155 ~~~G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~ 232 (370)
T 1chr_A 155 ERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALR 232 (370)
T ss_dssp HTTCCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTE--EEEECCSCTTCHHHHH
T ss_pred HHCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHH
Confidence 6 899999999995 789999999999998 6789999999999999999999999999987 5999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+++++
T Consensus 233 ~l~~----~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~ 308 (370)
T 1chr_A 233 RLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVA 308 (370)
T ss_dssp HHHH----HSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECCSCCTTHHHHHH
T ss_pred HHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecCCCccHHHHHHH
Confidence 9975 57899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++++||+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 309 ~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 363 (370)
T 1chr_A 309 LQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363 (370)
T ss_dssp HHHHTTSSCCTTCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHH
T ss_pred HHHHHhCCCCccchhcccchhhhhcccCCCceeECCEEECCCCCcCCcccCHHHH
Confidence 999999999888 689888877889999899999999999999999999999865
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-72 Score=562.59 Aligned_cols=354 Identities=35% Similarity=0.540 Sum_probs=331.9
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (412)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+.+++|+...+...+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g~~~~ 80 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 89999999999999999999999999999999999999999999999998887888888877777777 89999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
+++.+|+.|.+.+.++. +|++||||||||+.||..|+|||+||||.++++|+|++++..+++++.+.++++.++|
T Consensus 81 ~~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G 155 (366)
T 1tkk_A 81 GYEAILHDIQHLLTGNM-----SAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQG 155 (366)
T ss_dssp GHHHHHHHHHHSSSSCH-----HHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcC
Confidence 99999999987555432 4899999999999999999999999999778999999999889999999999999999
Q ss_pred CCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc--CCCCCceeecCCCCCCHHHHHHh
Q 015161 205 FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 205 f~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~--~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
|+++|+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|++++++|
T Consensus 156 f~~iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i--~~iEqP~~~~d~~~~~~l 233 (366)
T 1tkk_A 156 FQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI--ELVEQPVHKDDLAGLKKV 233 (366)
T ss_dssp CCEEEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCc--eEEECCCCcccHHHHHHH
Confidence 9999999996 899999999999997 7999999999999999999999999999 887 599999999999999999
Q ss_pred HHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+++.++++|
T Consensus 234 ~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~ 309 (366)
T 1tkk_A 234 TD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAH 309 (366)
T ss_dssp HH----HCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHH
T ss_pred Hh----hCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHH
Confidence 75 57899999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 360 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+++++|++.++|+++|+.+.+|++.++++++||++.+|++||||+++|++.
T Consensus 310 laaa~~~~~~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 360 (366)
T 1tkk_A 310 FAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAALL 360 (366)
T ss_dssp HHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEEEECC-
T ss_pred HHHcCCCCceecccchhhcccccccCCceEECCEEECCCCCccceEecccc
Confidence 999999999999999877778888888999999999999999999999874
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-73 Score=570.81 Aligned_cols=356 Identities=20% Similarity=0.282 Sum_probs=319.8
Q ss_pred eeeEEeEEEEEEEEecccc--ceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCC
Q 015161 44 FTVDVQRAENRPLNVPLIA--PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~--pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (412)
|+|||++|+++++++|+++ ||+++.++++.++.++|||+|++|++||||+.. ++++.|+... .++.+.|.|+|+
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~~~~~~~~~~---~i~~l~p~l~G~ 76 (389)
T 3ozy_A 1 MSLKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-PYDLAVLKRA---IEDVIGPQLIGE 76 (389)
T ss_dssp -CCCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-SSCHHHHHHH---HHHTTHHHHTTS
T ss_pred CCCEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-CCCchHHHHH---HHHHHHHHHcCC
Confidence 5799999999999999999 999999999999999999999999999999983 3333444433 345689999999
Q ss_pred CCCCHHHHHHHHHhh--cCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCe-eeeceee-c-CCCHHHH
Q 015161 122 PAMALGSVFGVVAGL--LPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNT-ITTDITI-P-IVSPAEA 193 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~--~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~-i~~~~~i-~-~~~~~~~ 193 (412)
++.+++.+|+.|++. +++ .. .....|++|||+||||++||.+|+|||+||||. +++ +|+|.++ + ..+++++
T Consensus 77 d~~~~~~~~~~l~~~~~~~~~g~~-~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~r~~~v~~y~~~~~~~~~~e~~ 155 (389)
T 3ozy_A 77 DPANINYLWHKVFHGEVSRNLGHR-SVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLTPDQA 155 (389)
T ss_dssp CTTCHHHHHHHHHHHTHHHHHCSB-SHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCSSTTCEEEEEEEECSSCCHHHH
T ss_pred CcchHHHHHHHHHhhhhhhccCCc-hHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcccCCceeeEEecCCCCCCHHHH
Confidence 999999999999764 321 11 113468999999999999999999999999998 678 9999998 7 7899999
Q ss_pred HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.+.+++++++||++||+|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++
T Consensus 156 ~~~a~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~--~iEqP~~~~ 233 (389)
T 3ozy_A 156 ADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCY--WFEEPLSID 233 (389)
T ss_dssp HHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCS--EEESCSCTT
T ss_pred HHHHHHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCC--EEECCCCcc
Confidence 999999999999999999999999999999999997 79999999999999999999999999999974 999999999
Q ss_pred CHHHHHHhH-HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 273 DWEGLGHVS-HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 273 d~~~~~~l~-~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
|++++++|+ + ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|
T Consensus 234 d~~~~~~l~~~----~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~ 308 (389)
T 3ozy_A 234 DIEGHRILRAQ----GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTF-ND 308 (389)
T ss_dssp CHHHHHHHHTT----CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCCCT-TS
T ss_pred cHHHHHHHHhc----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-Cc
Confidence 999999987 4 68999999999999999999999999999999999998 99999999999999999999976 89
Q ss_pred HHHHHHHHHHHccCCCCceecccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 351 RLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++++++||++++||+.++|++.. ..+.++++.++++++||++.+|++||||+++|+|.+
T Consensus 309 ~i~~aa~~hlaaa~~~~~~~e~d~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 370 (389)
T 3ozy_A 309 IITVAANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFV 370 (389)
T ss_dssp HHHHHHHHHHHHHCCSCCCEEEECSSCGGGTTSBSCCCCCBTTEECCCCSSBTCSCBCHHHH
T ss_pred HHHHHHHHHHHHhCCCCeeEEecCccchhhHhhccCCceeECCEEECCCCCcCCcccCHHHH
Confidence 9999999999999999998887642 224567778888999999999999999999999865
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-72 Score=565.39 Aligned_cols=348 Identities=19% Similarity=0.274 Sum_probs=317.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC---CccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---PHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~---~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
|||++|+++.+++|++.||++ +.++|||+|++|++||||+.+. |.+++|+. ++ .+.+.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~--------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~--~i--~~~l~p~liG~d 68 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH--DL--KQGLLSILLGQN 68 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE--------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH--HH--HHHHHHHHTTCC
T ss_pred CEEEEEEEEEEecccCCCccc--------ceEEEEEEECCCCEEEeccccccCCCccchhHH--HH--HHHHHHHhCCCC
Confidence 899999999999999999876 6899999999999999999875 56777765 22 245899999999
Q ss_pred CCCHHHHHHHHHhhcCCCc--chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec----CCCHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQ--FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP----IVSPAEAAE 195 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~--~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~----~~~~~~~~~ 195 (412)
+.+++.+|+.|++.+.... ......|++||||||||++||.+|+|||+||||. +++||+|++++ ..+++++.+
T Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~ 148 (391)
T 3gd6_A 69 PFDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLD 148 (391)
T ss_dssp TTCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHH
Confidence 9999999999987544110 0012368999999999999999999999999995 67899999998 778999999
Q ss_pred HHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~-vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
++++++++||++||+|+|.++++|++++++||++ ++++.|+ +|+|++|++++|++++++|+++++.+.|||||++++|
T Consensus 149 ~a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d 228 (391)
T 3gd6_A 149 VVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRND 228 (391)
T ss_dssp HHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSCTTC
T ss_pred HHHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCChhh
Confidence 9999999999999999999999999999999997 7999999 9999999999999999999999872249999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
++++++|++ ++++|| ||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|
T Consensus 229 ~~~~~~l~~----~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i 302 (391)
T 3gd6_A 229 FDGLYQLRL----KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSV 302 (391)
T ss_dssp HHHHHHHHH----HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHH
T ss_pred HHHHHHHHH----HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecCCCccHH
Confidence 999999975 678999 999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCC--CCCcccccCCCCC
Q 015161 353 AMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTN--ARGHGGFLHWDNI 411 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~--~pGlG~~ld~~~~ 411 (412)
++++++||++++||+.+ +|+++++.+.+|++.++++++||++.+|+ +||||+++|++++
T Consensus 303 ~~aa~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~~PGlGv~~d~~~l 364 (391)
T 3gd6_A 303 GTAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLYAPDRSVKGLGIELDESLL 364 (391)
T ss_dssp HHHHHHHHHTTCSSCCSCBCCCGGGGBSCCSBSSCCCEETTEEECCCTTSSBTSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCCCccccccchhhhhhccccCCceeECCEEEeCCCCCCCCCcccCHHHH
Confidence 99999999999999999 99999887778999999999999999999 9999999999865
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-72 Score=563.65 Aligned_cols=350 Identities=25% Similarity=0.371 Sum_probs=317.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEecc--CCccCcccHHHHHHHHHH-HhHHHc---
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLK--- 119 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~--- 119 (412)
|||++|+++++++||+.||+++.++++.++.++|||+|++|++||||+.+ .|+|++|+...+...+++ +.|.++
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l~~~~ 80 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRFARWL 80 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999985 467888888777776765 789999
Q ss_pred ----CCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCC-HHHHH
Q 015161 120 ----ESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS-PAEAA 194 (412)
Q Consensus 120 ----g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~-~~~~~ 194 (412)
|+++.+++.+++.+. .++|+ ..|++||||||||++||..|+|||+||||.+++||+|++++..+ ++++.
T Consensus 81 ~~~~G~~~~~~~~~~~~~~-~~~g~-----~~A~said~ALwDl~gk~~g~Pl~~LLGg~r~~v~~~~~~~~~~~~e~~~ 154 (388)
T 3qld_A 81 RAASQDQDVDPRTVCEALR-DVRGN-----RMSVAAIEMAVWDWYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLI 154 (388)
T ss_dssp TSGGGSSCCCGGGGGGGGT-TCCSC-----HHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSEEEBEEEECCCSCHHHHH
T ss_pred cccCCCCccCHHHHHHHHH-HccCc-----HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEeEEecCCCCHHHHH
Confidence 999998888887663 34443 24899999999999999999999999999888999999999876 99999
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
+++++++++||++||+|+|. ++|+++|++||++.|++.|++|+|++|++++|++ +++|+++++ .|||||++++|+
T Consensus 155 ~~~~~~~~~G~~~~K~Kv~~--~~d~~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i--~~iEeP~~~~d~ 229 (388)
T 3qld_A 155 QSVDAAVEQGFRRVKLKIAP--GRDRAAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDL--QFIEQPLPEDDW 229 (388)
T ss_dssp HHHHHHHHTTCSEEEEECBT--TBSHHHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCC--SCEECCSCTTCH
T ss_pred HHHHHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCC--cEEECCCCcccH
Confidence 99999999999999999985 6899999999998899999999999999999986 899999987 499999999999
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|+
T Consensus 230 ~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~ 305 (388)
T 3qld_A 230 FDLAKLQA----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGGMYETGVG 305 (388)
T ss_dssp HHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred HHHHHHHH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecCccchHHH
Confidence 99999985 67899999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcee-cccCC-cccccCCCCCce-eeeCcEEeeCCCCCcccccCCCCC
Q 015161 354 MGFAGHLSAGLGCFKFI-DLDTP-LLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 354 ~~a~~hlaaa~~~~~~~-e~~~p-~~~~~d~~~~~~-~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
.++++|+++ ++|+.+. +++.+ ..+.+|++.+++ +++||++.+|++||||+++|++.+
T Consensus 306 ~aa~~~laa-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 365 (388)
T 3qld_A 306 RVHGLIAAA-LPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVPQCAGVADWVDRDAV 365 (388)
T ss_dssp HHHHHHHHT-STTBCSCBSCCCGGGTCSSCSBSSCCCCSBTTEEECCCCSSSGGGBCHHHH
T ss_pred HHHHHHHHc-CCCCCcccccCcchhhHHhhcccCCCceeECCEEECCCCCcCCceeCHHHH
Confidence 999999987 8998764 45433 345678888888 899999999999999999999875
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-71 Score=555.30 Aligned_cols=354 Identities=24% Similarity=0.375 Sum_probs=328.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++|++.||+++.++++.++.++|+|+| +|++||||+.+. +.|++|+...+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHHcCCC
Confidence 89999999999999999999999999999999999999 999999999876 56778887777777765 889999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+.+++.+|+.|.+...++. +|++||||||||+.||.+|+|+|+||||. ++++|+|++++..+++++.+.+++++
T Consensus 80 ~~~~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~ 154 (370)
T 1nu5_A 80 ASNLSQARVLMDRAVTGNL-----SAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMI 154 (370)
T ss_dssp TTCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHTTCBHHHHHTCCSCSEEEBCEEECSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCcCCceEeeEEecCCCHHHHHHHHHHHH
Confidence 9999999999987655432 48999999999999999999999999997 57899999998889999999999999
Q ss_pred H-cCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 202 K-QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 202 ~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
+ +||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|+++++
T Consensus 155 ~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~~~~~~~~ 232 (370)
T 1nu5_A 155 ETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALR 232 (370)
T ss_dssp HTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCC--EEECCSCTTCHHHHH
T ss_pred HhCCccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcc--eEeCCCCcccHHHHH
Confidence 9 999999999995 789999999999997 78999999999999999999999999999974 999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.||+++++++
T Consensus 233 ~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~ 308 (370)
T 1nu5_A 233 RLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAA 308 (370)
T ss_dssp HHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHH
T ss_pred HHHH----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecCCcchHHHHHHH
Confidence 9985 57899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++++||+.+ +|+++|+.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 309 ~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 363 (370)
T 1nu5_A 309 LHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDKV 363 (370)
T ss_dssp HHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHhcCCCCCcccccCchhhhccccccCCceEECCEEECCCCCCCCceeCHHHH
Confidence 999999999998 898887666788888889999999999999999999999865
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-71 Score=555.68 Aligned_cols=356 Identities=19% Similarity=0.330 Sum_probs=314.3
Q ss_pred cceeeEEeEEEEEEEEecc-ccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC-ccCcccHHHHHHHHHHHhHHHc
Q 015161 42 QTFTVDVQRAENRPLNVPL-IAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP-HVTAEDQQTAMVKASEACEVLK 119 (412)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl-~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~-~~~~e~~~~~~~~~~~~~~~l~ 119 (412)
...+|||++|+++++++|+ +.||++|.++.+.++.++|||+|++|++||||+.+.+ .++.+....+...++.+.|.++
T Consensus 6 ~~~sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 6 HHHSLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp ---CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4568999999999999998 5699999999999999999999999999999998754 3444455555556677899999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHH
Q 015161 120 ESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELAS 198 (412)
Q Consensus 120 g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~ 198 (412)
|+++.+.+ ++..+.....++. .|+||||+||||++||.+|+|||+||||+ ++++++|++++..+++++.++++
T Consensus 86 g~d~~~~~-~~~~~~~~~~~~~-----~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~s~~~~~~~~~~~~a~ 159 (376)
T 4h2h_A 86 GAEALPLP-LHTRMDSLLCGHN-----YAKSALDIAVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQAL 159 (376)
T ss_dssp TCBSSHHH-HHHHHHHHCSCCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEECEEEECSCCHHHHHHHHH
T ss_pred CCccCcHH-HHHHHHHhhcccH-----HHHHHHHHhhhHHHHHhcCCCceecCCCCcCCceeEeeecccCCHHHHHHHHH
Confidence 99998776 4445555566653 37999999999999999999999999997 46899999999999999999999
Q ss_pred HHHHcCCCEEeEecC-CChhHHHHHHHHHHHh--CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHH
Q 015161 199 KYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 275 (412)
Q Consensus 199 ~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~--~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~ 275 (412)
+++++||+++|+|+| .+++.|+++++++|++ ++++.||+|+|++|++++|++++++++++++ |||||++ +++
T Consensus 160 ~~~~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~---~iEeP~~--~~~ 234 (376)
T 4h2h_A 160 EKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFE 234 (376)
T ss_dssp HHHHHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCSS--SHH
T ss_pred HHHhcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc---cccCCcc--hhh
Confidence 999999999999999 4678999999999985 6899999999999999999999999998874 9999995 477
Q ss_pred HHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 276 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
++++|++ .+++||++||++++..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.
T Consensus 235 ~~~~l~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~~~~i~~ 310 (376)
T 4h2h_A 235 DLEAIRP----LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVS 310 (376)
T ss_dssp HHHHHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSSCSHHHH
T ss_pred hHhhhhh----cccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCCCCccHHHH
Confidence 8888864 67899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHccCCCC--ceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 355 GFAGHLSAGLGCF--KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 355 ~a~~hlaaa~~~~--~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++|++++.++. ...++..|+...++.+.++++++||++.+|++||||+++|+|+|.
T Consensus 311 aa~~hlaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~e~L~ 370 (376)
T 4h2h_A 311 AACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTIDPERFG 370 (376)
T ss_dssp HHHHHHHTTSCGGGEEECCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCCCTTTTC
T ss_pred HHHHHHHHhCCccccccccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEECHHHcC
Confidence 9999999987643 234456677667777888899999999999999999999999874
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-72 Score=558.22 Aligned_cols=353 Identities=24% Similarity=0.439 Sum_probs=329.2
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (412)
|||++|+++.+++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.+++|+...+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g~d~~ 80 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIGQNPM 80 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTTCCTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 89999999999999999999999999999999999999999999999998766677887777777777 89999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHc
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 203 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 203 (412)
+++.+|+.|.+...++. +|++||||||||+.||..|+|||+||||. ++++|++++++..+++++.+.++++.++
T Consensus 81 ~~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~i~~~~~~~~~~~a~~~~~~ 155 (369)
T 2p8b_A 81 NIEKIHDMMDNTIYGVP-----TAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQK 155 (369)
T ss_dssp CHHHHHHHHHHHCSCCH-----HHHHHHHHHHHHHHHHHTTSBGGGGTTCCCCSCEECCEEECSCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeeEEecCCChHHHHHHHHHHHHc
Confidence 99999999987665432 48999999999999999999999999997 6789999999988999999999999999
Q ss_pred CCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 204 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV-EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 204 Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~-~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+ ++++.|+++++. |||||++++|++++++|+
T Consensus 156 Gf~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~ 233 (369)
T 2p8b_A 156 GYQSFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNID--WIEQPVIADDIDAMAHIR 233 (369)
T ss_dssp TCCEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCS--CEECCBCTTCHHHHHHHH
T ss_pred CcCEEEEEeCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCc--EEECCCCcccHHHHHHHH
Confidence 99999999999999999999999997 79999999999999999999 999999999974 999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.||+++.++++|+
T Consensus 234 ~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~l 309 (369)
T 2p8b_A 234 S----KTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHV 309 (369)
T ss_dssp H----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecCCCccHHHHHHHHHH
Confidence 5 67899999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++||+.++|+++|+++.+| .++++++||++.+|++||||+++|++.+
T Consensus 310 aa~~~~~~~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~~d~~~l 358 (369)
T 2p8b_A 310 AFSKKIITSVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIEINEDTL 358 (369)
T ss_dssp HTTCTTEEEECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCCCCHHHH
T ss_pred HHcCCCCceeccCcchhcccc--CCCceeECCEEeCCCCCcCCCccCHHHH
Confidence 999999999999888655566 6778899999999999999999999865
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-71 Score=556.91 Aligned_cols=352 Identities=20% Similarity=0.310 Sum_probs=307.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++.+++||++||+++.+++++++.++|||+|++|++||||+.+.+ .... ...+.+.|.|+|+++.+
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~~-----~~~~--~~~~~~~~~liG~d~~~ 73 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPA-----RPNA--AVVQAYSGWLIGQDPRQ 73 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSCH-----HHHH--HHHHHHHTTTTTSCTTC
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCCc-----chHH--HHHHHHHHHHcCCChHH
Confidence 8999999999999999999999999999999999999999999999986532 1111 12356889999999999
Q ss_pred HHHHHHHHHhhcCCCcc-hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecCC-----CHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLPGHQF-ASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIV-----SPAEAAELAS 198 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~-~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~-----~~~~~~~~~~ 198 (412)
++.+|+.|++....... .....|++|||+||||++||.+|+|||+||||.. +++++|.+.+.. .+++.+++++
T Consensus 74 ~e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 153 (378)
T 4hpn_A 74 TEKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGSFKRDNVDRVSDNASEMA 153 (378)
T ss_dssp HHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEEEEECCCBCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCccccCcceeeeeccccccchhHHHHHHHHH
Confidence 99999999876543221 1234689999999999999999999999999975 588999876542 3466677788
Q ss_pred HHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 199 KYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 199 ~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
++.++||+++|+|+|.++++|+++|+++|++ +|++.||+|+|++|++++|++++++|+++++. |||||++++|++++
T Consensus 154 ~~~~~Gf~~~K~k~g~~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d~~~~ 231 (378)
T 4hpn_A 154 ERRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGID--WFEEPVVPEQLDAY 231 (378)
T ss_dssp HHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCCS--CEECCSCTTCHHHH
T ss_pred HHHHhccceecccccCChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcccc--hhhcCCCccchhhh
Confidence 8889999999999999999999999999997 89999999999999999999999999999984 99999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a 356 (412)
++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++++.++
T Consensus 232 ~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v~~h~-~~~~i~~aa 306 (378)
T 4hpn_A 232 ARVRA----GQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHV-WGTGVQIAA 306 (378)
T ss_dssp HHHHH----HSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEECCBC-CSSHHHHHH
T ss_pred HHHHh----hCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeEEeCC-CCcHHHHHH
Confidence 99975 68999999999999999999999999999999999998 9999999999999999998876 489999999
Q ss_pred HHHHHccCCCCce--------ecccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 357 AGHLSAGLGCFKF--------IDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 357 ~~hlaaa~~~~~~--------~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++++++..+ .|++.. ..+.++++.++++++||++.+|++||||+++|+|+|
T Consensus 307 ~~h~~aa~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 370 (378)
T 4hpn_A 307 ALQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDAL 370 (378)
T ss_dssp HHHHHHHCCCSSCCSSCCCCCEEEECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHHHHcCcccccccccccceeeccccchhhhhhccCCCeeECCEEECCCCCCCcceECHHHH
Confidence 9999998865432 333221 123467788889999999999999999999999876
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-71 Score=555.28 Aligned_cols=357 Identities=18% Similarity=0.269 Sum_probs=311.0
Q ss_pred CCCcccccccccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHH
Q 015161 31 APTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK 110 (412)
Q Consensus 31 ~~~~~~~~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~ 110 (412)
..+.|.|++... .|||++|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+. +.+. ....
T Consensus 14 ~~~~~~~~~m~~--~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~-~~~~---~~~~ 87 (383)
T 3toy_A 14 GTENLYFQSMMT--TAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTR-LALK---PLVH 87 (383)
T ss_dssp -----------C--CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSSG-GGHH---HHHH
T ss_pred ChhhccccccCC--CCEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCCC-chHH---HHHH
Confidence 456788887433 289999999999999999999999999999999999999999999999987532 1222 2233
Q ss_pred H-HHHhHHHcCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC
Q 015161 111 A-SEACEVLKESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 187 (412)
Q Consensus 111 ~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~ 187 (412)
+ +.+.|.|+|+++.+++ +|+.|++.. .|+.. ....|++||||||||++||.+|+|||+||||..+++|+|.+++.
T Consensus 88 i~~~l~p~l~G~d~~~~e-~~~~l~~~~~~~g~~g-~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~ 165 (383)
T 3toy_A 88 LVEDIGRELAGKALVPVD-LMKAMDAKFRLLGWQG-LVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGV 165 (383)
T ss_dssp HHHHHHHHTTTCBCCHHH-HHHHHHHHTTTTCCST-HHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCCEEEEEECSS
T ss_pred HHHHHHHHhCCCCCCcHH-HHHHHHHHHhhcCCcc-hHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEeEecCC
Confidence 3 5689999999999999 999998753 33321 12468999999999999999999999999999899999999888
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 188 VSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
.+++++.+++++++++ ||++||+|+|. ++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++ .|
T Consensus 166 ~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~ 243 (383)
T 3toy_A 166 LDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDL--TW 243 (383)
T ss_dssp CCHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SE
T ss_pred CCHHHHHHHHHHHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCC--CE
Confidence 9999999999999999 99999999995 799999999999997 8999999999999999999999999999997 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++
T Consensus 244 iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~ 319 (383)
T 3toy_A 244 IEEPVPQENLSGHAAVRE----RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMS 319 (383)
T ss_dssp EECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBC
T ss_pred EECCCCcchHHHHHHHHh----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 999999999999999975 67899999999999999999999999999999999998 9999999999999999999
Q ss_pred EccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 344 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 344 ~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++.+ +++|+++++||+.++|+.. +.++++.++++++|| +.+|++||||+++|+|.+
T Consensus 320 ~h~~~~------a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G-i~~p~~PGlGve~d~~~l 377 (383)
T 3toy_A 320 SHILPE------ASAHVLPVTPTAHFLEVLD---FAGAILTEPLRVIDG-KVTAKGPGLGLAWNESAV 377 (383)
T ss_dssp CCSCHH------HHHHHGGGCTTBCCEEECC---SSGGGBSSCCCCBTT-EECCCCSBTSCCBCHHHH
T ss_pred ecCHHH------HHHHHHHhCCCCceeeccc---hhhhhccCCCeeeCC-EECCCCCcCCccCCHHHH
Confidence 999853 6789999999999988753 346777788899999 999999999999999875
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-71 Score=557.99 Aligned_cols=357 Identities=24% Similarity=0.344 Sum_probs=315.5
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc-cCcccHHHHHHHHHH-HhH-HHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-VTAEDQQTAMVKASE-ACE-VLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~-~~~e~~~~~~~~~~~-~~~-~l~g 120 (412)
|.|||++|+++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+.+. |++|+...+...+++ +.| .|+|
T Consensus 1 m~MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l~G 80 (397)
T 2qde_A 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLG 80 (397)
T ss_dssp --CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTTTT
T ss_pred CCCEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhhcC
Confidence 4599999999999999999999999999999999999999999999999988764 577877777777776 899 9999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|.....+ . .+|++||||||||+.||..|+|||+||||. ++++|+|++++..+++++.+.+++
T Consensus 81 ~d~~~~~~l~~~l~~~~~~--~---~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~~g~~~~e~~~~~a~~ 155 (397)
T 2qde_A 81 EDPTKIEKIVGRMDILTRD--N---NQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALA 155 (397)
T ss_dssp CCTTCHHHHHHHHHHHCSS--C---HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEBCEECCCSCHHHHHHHHHH
T ss_pred CChHhHHHHHHHhhhhhcc--c---hhHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceEEECCCCCHHHHHHHHHH
Confidence 9999999999998544433 2 258999999999999999999999999997 579999999888889999999999
Q ss_pred HHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
++++||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|+++++
T Consensus 156 ~~~~Gf~~vKik~g~~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~ 233 (397)
T 2qde_A 156 VLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNL--SKIEQPLPAWDLDGMA 233 (397)
T ss_dssp HHHHTCSCEEEECCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHH
T ss_pred HHHhhhhheeecccCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC--CEEECCCChhhHHHHH
Confidence 999999999999999999999999999997 8999999999999999999999999999997 4999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+++++
T Consensus 234 ~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ig~aa~ 309 (397)
T 2qde_A 234 RLRG----KVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPA 309 (397)
T ss_dssp HHHT----TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCCSCCHHHHHHH
T ss_pred HHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH
Confidence 9974 67899999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHccCC------C-----CceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLG------C-----FKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~------~-----~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++++++ | ..++++++|+.+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 310 ~hlaa~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (397)
T 2qde_A 310 AHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLV 374 (397)
T ss_dssp HHHHHHCTTGGGSCBCCCHHHHHTTCSSGGGCCCCSBTTCCEEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHHhCCcccccccccccceeeeecCCchhhhhccccCCceEECCEEECCCCCcCCcccCHHHH
Confidence 99999998 7 234566777666788888889999999999999999999999865
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-72 Score=561.47 Aligned_cols=356 Identities=18% Similarity=0.277 Sum_probs=302.8
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (412)
.+|||++|+++.+++|++.||+++.++++.++.++|||+|++|++||||+.+.....+++...+ .++ .+.|.|+|++
T Consensus 8 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~--~i~~~l~p~liG~d 85 (392)
T 3ddm_A 8 ASITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRAR--LVETVLAPLLTARA 85 (392)
T ss_dssp CCBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSSTTHHHHHHH--HHHHTHHHHHTTSC
T ss_pred CCCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCCCCCchHHHHH--HHHHHHHHHhCCCC
Confidence 4599999999999999999999999999999999999999999999999963211122332222 234 4899999999
Q ss_pred CCCHHHHHHHHHhh------cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHH
Q 015161 123 AMALGSVFGVVAGL------LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAEL 196 (412)
Q Consensus 123 ~~~~~~~~~~l~~~------~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~ 196 (412)
+.+++.+|+.|++. +.|+.. ....|+|||||||||++||.+|+|||+||||..+++|+|.+ +.. ++++.+.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~g~~g-~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~~-g~~-~e~~~~~ 162 (392)
T 3ddm_A 86 FADPAQAFAHLEARTAVLAIQTGEPG-PLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYAS-GIN-PENPEDV 162 (392)
T ss_dssp BSSHHHHHHHHHHTTHHHHHHHTCHH-HHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCCEEEEEEE-EEC-SSSHHHH
T ss_pred cCCHHHHHHHHHhhhhhhhhhcCCcc-hHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeEEee-cCC-HHHHHHH
Confidence 99999999999764 234321 12468999999999999999999999999999899999877 433 7888999
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC-H
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-W 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~ 274 (412)
+++++++||++||+|+|.++++|++++++||++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++| +
T Consensus 163 a~~~~~~G~~~iKlK~g~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~ 240 (392)
T 3ddm_A 163 VARKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQL--DWLEEPLRADRPA 240 (392)
T ss_dssp HHHHHHHTCCCEEEECSSCHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTSCH
T ss_pred HHHHHHcCCCEEEEecCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCC--CEEECCCCccchH
Confidence 999999999999999999999999999999998 8999999999999999999999999999997 49999999999 9
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++|+|+
T Consensus 241 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~~~i~ 315 (392)
T 3ddm_A 241 AEWAELAQ----AAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRYCPHY-LGAGIG 315 (392)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEECCEE-CSCHHH
T ss_pred HHHHHHHH----hcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEEecC-CchHHH
Confidence 99999975 67899999999999999999999999999999999998 9999999999999999999887 599999
Q ss_pred HHHHHHHHccCCC---CceecccCCcccccCCCCCce-eeeCcEEeeCCCCCcccccCCCCC
Q 015161 354 MGFAGHLSAGLGC---FKFIDLDTPLLLSEDPVLDGY-EVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 354 ~~a~~hlaaa~~~---~~~~e~~~p~~~~~d~~~~~~-~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++++|+++++|| +.++|++.......|++.+++ +++||++.+|++||||+++|+|.+
T Consensus 316 ~aa~~hl~aa~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 377 (392)
T 3ddm_A 316 LQASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGRITLGGAPGLGVTPDLAAL 377 (392)
T ss_dssp HHHHHHHHHHSCCSSSCCEEEEESSCCHHHHTTCGGGGGCBTTEEECCSCSBTSCCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCceEEecCCcchHHHhccCCcceeeCCEEECCCCCcCCceeCHHHH
Confidence 9999999999999 678887653222234778888 899999999999999999999875
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-71 Score=557.11 Aligned_cols=353 Identities=22% Similarity=0.283 Sum_probs=296.1
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (412)
..|||++|+++++++||++||++|.++.+.++.++|||+|++|++||||+.+. .++...+...++ .++|.|+|+|
T Consensus 18 ~~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~----~~~~~~~~~~i~~~lap~LiG~d 93 (388)
T 4h83_A 18 HGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDE----HETMFDIDRIIHEELAPTLIGQD 93 (388)
T ss_dssp --CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCC----CTTHHHHHHHHHHTTHHHHTTSB
T ss_pred CCCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCC----cccHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999999999999999999999999999999999999999999753 234333334444 4799999999
Q ss_pred CCCHHHHHHHHHhhcC--CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCC--CHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELAS 198 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~--g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~--~~~~~~~~~~ 198 (412)
+.+++.+|+.+++... .........|+|||||||||++||.+|+|||+||||.++++++|.+.... +++++.++++
T Consensus 94 p~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~~~~~~y~~~~~~~~~~~~~~~~~~ 173 (388)
T 4h83_A 94 AMAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMH 173 (388)
T ss_dssp TTCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEEEEEECCTTCTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCcCceEEEeeccccCCCHHHHHHHHH
Confidence 9999999999987532 11112234689999999999999999999999999998999998775432 4567888999
Q ss_pred HHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCC-CCHH
Q 015161 199 KYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWE 275 (412)
Q Consensus 199 ~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~ 275 (412)
+++++||+++|+|+| .++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++. |||||+++ +|++
T Consensus 174 ~~~~~G~~~~Kikvg~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~~d~~ 251 (388)
T 4h83_A 174 NYQELGLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WFEEPVEWHNDKR 251 (388)
T ss_dssp HHHHHTBSEEEEECSSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCCC--CEESCBCSTTHHH
T ss_pred HHHHcCCceEeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCcc--eeecCcccccchH
Confidence 999999999999996 6899999999999997 89999999999999999999999999999984 99999986 5788
Q ss_pred HHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 276 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++.+|+ ++
T Consensus 252 ~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v~~h~--~~---- 321 (388)
T 4h83_A 252 SMRDVRY----QGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQMGHHE--EP---- 321 (388)
T ss_dssp HHHHHHH----HSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEECCCS--CH----
T ss_pred HHHHHHh----hcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEEEecC--HH----
Confidence 9999875 68999999999999999999999999999999999997 9999999999999999887765 33
Q ss_pred HHHHHHHccCCCCceecccCCc--ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 355 GFAGHLSAGLGCFKFIDLDTPL--LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 355 ~a~~hlaaa~~~~~~~e~~~p~--~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++|++++++|+.+.|+..+. .+..+++.++++++||++.+|++||||+++|+|.|+
T Consensus 322 ~~~~h~~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~d~l~ 381 (388)
T 4h83_A 322 QVSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTLTLSDRPGLGWDLNWDYID 381 (388)
T ss_dssp HHHHHHHHHSTTBCCEEEECTTTCHHHHHSBTTCCCCBTBEEECCSCSBTCCCBCHHHHH
T ss_pred HHHHHHHHHhhcCcceeecCcccchhhhhccCCCCeeECCEEECCCCCCCCeeeCHHHHH
Confidence 4678999999999888864432 134577788899999999999999999999998763
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-71 Score=557.33 Aligned_cols=349 Identities=19% Similarity=0.289 Sum_probs=317.8
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
.|||++|+++++++|++.||+++.++++.++.++|||+| +|++||||+.+. |.|++|+...+...+++ +.|.|+|+
T Consensus 6 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~liG~ 84 (400)
T 3mwc_A 6 SARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGK 84 (400)
T ss_dssp CCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHHTTC
T ss_pred CcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHHcCC
Confidence 499999999999999999999999999999999999999 999999999875 56888988877777765 78999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-------------CCCCeeeeceeecCC
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-------------GVSNTITTDITIPIV 188 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-------------g~~~~i~~~~~i~~~ 188 (412)
++.+++.+|+.|+..++|+. .|++||||||||++||.+|+|||+||| +.+++||+|+++++.
T Consensus 85 d~~~~e~~~~~l~~~~~g~~-----~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~r~~v~~~~s~g~~ 159 (400)
T 3mwc_A 85 EPLSIEEFNHLIKNGIRGNH-----FARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIP 159 (400)
T ss_dssp CCSSHHHHHHHHHHSCCSCH-----HHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCBCSEEEBCEEECCC
T ss_pred CCCCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccCCCeEEeeEEeccC
Confidence 99999999999987666543 389999999999999999999999999 567799999999865
Q ss_pred -C--HHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 189 -S--PAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 189 -~--~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+ ++++.+++++++++||++||+|++ +++|+++|++||++ ++++.|++|+|++|+.++ ++++++|+++++ .|
T Consensus 160 ~~~~~e~~~~~a~~~~~~G~~~iKlKv~--~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i--~~ 234 (400)
T 3mwc_A 160 EDGRIETLIHQVEESLQEGYRRIKIKIK--PGWDVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKC--LF 234 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSCEEEECB--TTBSHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCC--SC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeC--cchHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCC--CE
Confidence 6 899999999999999999999996 47899999999997 799999999999999999 999999999997 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++
T Consensus 235 iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~ 310 (400)
T 3mwc_A 235 HEQPLHYEALLDLKELGE----RIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLW 310 (400)
T ss_dssp EESCSCTTCHHHHHHHHH----HSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEE
T ss_pred EeCCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999975 57899999999999999999999999999999999998 9999999999999999999
Q ss_pred EccCcchHHHHHHHHHHHccCCCCcee-cccCCc-cccc--CCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 344 IGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPL-LLSE--DPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 344 ~~~~~es~i~~~a~~hlaaa~~~~~~~-e~~~p~-~~~~--d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|||+||+|++++++|||+ ++|+.+. +++.+. .+.+ |++. ++++||++.+|++||||+++|++.+
T Consensus 311 ~~~~~es~i~~aa~~hlaa-~~~~~~~~d~~~~~~~~~~~~d~~~--~~~~~G~i~~p~~PGlGve~d~~~l 379 (400)
T 3mwc_A 311 GGTMPESGLGARFLISLAS-FRGFVFPADVAASEKWYGKGNDLVE--NTMTDGKIYVPDEPGASFDMTLSHL 379 (400)
T ss_dssp ECCSCCCHHHHHHHHHHTT-BTTBCSCBCCCCHHHHHCTTTSSSC--CCEETTEEECCCSBTTTTTCCHHHH
T ss_pred ecCCCCCHHHHHHHHHHHc-CCCCcceeccCchhhhhhcccCeeE--EEEECCEEECCCCCCcCcccCHHHH
Confidence 9999999999999999988 9998774 455442 2334 7766 7899999999999999999999875
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=552.55 Aligned_cols=344 Identities=20% Similarity=0.294 Sum_probs=300.9
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHH-HHHHHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV-KASEACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~-~~~~~~~~l~g~~ 122 (412)
|.|||++|+++.+++| ||.+ +. ++.++|||+|++|++||||+. .+++...+.. .++.+.|.|+|+|
T Consensus 1 m~MkI~~i~~~~~~~p---~~~~----~~-~~~~~V~v~td~G~~G~GE~~-----~~~~~~~~~~~~~~~l~p~liG~d 67 (393)
T 4dwd_A 1 MSLKIAKVEALSVAMG---DGTG----WM-PTSAFVRITAEDGTVGWGEAS-----PMLGGIASLGVVARDIAPFLEGQE 67 (393)
T ss_dssp -CCBEEEEEEEEEECC---C----------CEEEEEEEEETTSCEEEEEEC-----CGGGGHHHHHHHHHHTHHHHTTSB
T ss_pred CCCEEEEEEEEEEcCC---Cccc----cc-ceEEEEEEEECCCCEEEEEcc-----CcHHHHHHHHHHHHHHHHHHCCCC
Confidence 5699999999999998 6654 44 789999999999999999997 2344444422 2466899999999
Q ss_pred CCCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec---CCCHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---IVSPAEAAELA 197 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~---~~~~~~~~~~~ 197 (412)
+.+++.+|+.|++...++. .+....|+|||||||||++||.+|+|||+||||. +++||+|.+++ ..+++++.+++
T Consensus 68 ~~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~s~~g~~~~~~e~~~~~a 147 (393)
T 4dwd_A 68 VLDHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVDEVVREV 147 (393)
T ss_dssp GGGHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeEEecCccCCCCHHHHHHHH
Confidence 9999999999987543221 1123469999999999999999999999999998 77999999962 46899999999
Q ss_pred -HHHHHcCCCEEeEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecC
Q 015161 198 -SKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268 (412)
Q Consensus 198 -~~~~~~Gf~~~KiKvG~-------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP 268 (412)
++++++||++||+|+|. ++++|++++++||++ ++++.|++|+|++|+.++|++++++|+++++ .|||||
T Consensus 148 ~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEqP 225 (393)
T 4dwd_A 148 ARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGY--SWFEEP 225 (393)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTC--SEEECC
T ss_pred HHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECC
Confidence 99999999999999996 799999999999997 8999999999999999999999999999997 499999
Q ss_pred CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 269 ~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++++|++++++|++ ++++||++||++++..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 226 ~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 300 (393)
T 4dwd_A 226 VQHYHVGAMGEVAQ----RLDITVSAGEQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQT 300 (393)
T ss_dssp SCTTCHHHHHHHHH----HCSSEEEBCTTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred CCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCC
Confidence 99999999999975 5789999999999999999999999 999999999998 99999999999999999999999
Q ss_pred cchHHHHHHHHHHHccCCCC----ceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 348 VETRLAMGFAGHLSAGLGCF----KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 348 ~es~i~~~a~~hlaaa~~~~----~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|++++++||++++||+ .++|+ +...+|++.++++++||++.+|++||||+++|+|.+
T Consensus 301 -~~~i~~aa~~hlaaa~p~~~~~~~~~e~---~~~~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 364 (393)
T 4dwd_A 301 -QPGVGHFANIHVLSTLMHMTKPVELADR---WDRGRPVFRNPAEPVDGHFALGDAPGLGIVVDEDEL 364 (393)
T ss_dssp -CSSHHHHHHHHHHHTCTTCCSCEEECTT---GGGGTTTBSSCCCCBTTEEECCCCSBTCCCBCHHHH
T ss_pred -CcHHHHHHHHHHHHhCCCcccccceeEe---ecCcccccCCCceeECCEEECCCCCcCCCccCHHHH
Confidence 9999999999999999998 56662 112337778888999999999999999999999875
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-71 Score=555.77 Aligned_cols=348 Identities=20% Similarity=0.274 Sum_probs=308.5
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
.+|||++|+++++++|++.||.++.++.+.++.++|||+|++|++||||+.+ ++++. ..++.+.|.++|+++
T Consensus 22 ~mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~-----g~~~~---~~i~~l~p~liG~d~ 93 (398)
T 4dye_A 22 SMMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMW-----GAPVA---AIVRRMAPDLIGTSP 93 (398)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHHHHHTTCCT
T ss_pred CCceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecC-----chHHH---HHHHHHHHHHcCCCc
Confidence 3589999999999999999999999999999999999999999999999975 23322 334678999999999
Q ss_pred CCHHHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee------cCC---CHH
Q 015161 124 MALGSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI------PIV---SPA 191 (412)
Q Consensus 124 ~~~~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i------~~~---~~~ 191 (412)
.+++.+|+.|+.. ..|.. ...|++||||||||++||.+|+|||+||||. +++||+|.++ +.. +++
T Consensus 94 ~~~~~~~~~l~~~~~~~g~~---~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~~g~~~~~~~e 170 (398)
T 4dye_A 94 FALEAFHRKQHMVPFFYGYL---GYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPK 170 (398)
T ss_dssp TCHHHHHHHTTTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECGGGSTTCCTTTHHH
T ss_pred cCHHHHHHHHHhhhhhhccc---cHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCcCCeEEEEEEEeccccCCcccCCCHH
Confidence 9999999988542 11111 2268999999999999999999999999997 4799999987 443 358
Q ss_pred HHHHHHHHHHHc-CCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 192 EAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 192 ~~~~~~~~~~~~-Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
++.+++++++++ ||++||+|+|.++++|++++++||++.|++.|++|+|++|++++|++++++|+++++ .|||||++
T Consensus 171 ~~~~~a~~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~ 248 (398)
T 4dye_A 171 AMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDL--EYLEDPCV 248 (398)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSS
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEcCCCC
Confidence 899999999999 999999999999999999999999987999999999999999999999999999997 49999999
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcc
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 249 --d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~e 322 (398)
T 4dye_A 249 --GIEGMAQVKA----KVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGE 322 (398)
T ss_dssp --HHHHHHHHHH----HCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCC
T ss_pred --CHHHHHHHHh----hCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcCCcc
Confidence 8999999975 67899999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 350 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 350 s~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++.++++|+++++||+.+........+.+|++ ++++++||++.+|++||||+++|++.+
T Consensus 323 ~~i~~aa~l~laaa~p~~~~~~d~~~~~~~~d~~-~~~~~~~G~i~vp~~PGlGve~d~~~l 383 (398)
T 4dye_A 323 LGIATAAHLAVVSSTPVLSRAIDSMYYLHADDII-EPLHLENGRLRVPSGPGLGVSVDEDKL 383 (398)
T ss_dssp CHHHHHHHHHHHHTCTTCCSCBCCSGGGBSCCSB-SCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred hHHHHHHHHHHHhcCCccceeecccchhhhhhcc-CCceeeCCEEECCCCCCCCceeCHHHH
Confidence 9999999999999999987532222233456666 778999999999999999999999875
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-70 Score=551.07 Aligned_cols=355 Identities=23% Similarity=0.335 Sum_probs=319.4
Q ss_pred ccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHH
Q 015161 41 TQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEV 117 (412)
Q Consensus 41 ~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~ 117 (412)
+..+.|||++|+++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+. +.|++|+...+...+++ +.|.
T Consensus 15 ~~~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~ 94 (386)
T 1wue_A 15 PRGSHMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPL 94 (386)
T ss_dssp --CCCCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHH
T ss_pred CCCCcCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999864 45778888777766765 7899
Q ss_pred HcCCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCC-CHHHHHHH
Q 015161 118 LKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAEL 196 (412)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~-~~~~~~~~ 196 (412)
|+|+++.+++.+++.|.. +.|+ . +|++||||||||++||..|+|||+||||.++++|+|.+++.. +++++.++
T Consensus 95 l~G~d~~~~~~l~~~l~~-~~g~--~---~A~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~g~~~~~~~~~~~ 168 (386)
T 1wue_A 95 LLTEAIEQPQEVSTIFEE-VKGH--W---MGKAALETAIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQ 168 (386)
T ss_dssp HTTSCCCSTHHHHHHGGG-SCSC--H---HHHHHHHHHHHHHHHHHTTSBGGGGSSSCCSEEECCEEECCCSCHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHH-ccCc--h---HHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCeeEeeEEecCCCCHHHHHHH
Confidence 999999999999988865 4443 2 489999999999999999999999999987899999988864 69999999
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHH
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~ 276 (412)
++++.++||+++|+|+|. ++|+++|++||++.|++.|++|+|++|+.++| +++++|+++++ .|||||++++|+++
T Consensus 169 a~~~~~~G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~ 243 (386)
T 1wue_A 169 VQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQL--AMIEQPFAADDFLD 243 (386)
T ss_dssp HHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCC--SCEECCSCTTCSHH
T ss_pred HHHHHHhhhheEEEeeCc--HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCC--eEEeCCCCcccHHH
Confidence 999999999999999984 67999999999988899999999999999999 99999999997 49999999999999
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHH
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~ 355 (412)
+++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|+.+
T Consensus 244 ~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~a 319 (386)
T 1wue_A 244 HAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRA 319 (386)
T ss_dssp HHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHH
T ss_pred HHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECCCcccHHHHH
Confidence 999974 67899999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 356 FAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 356 a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+| +++++.+ .+++.+. .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 320 a~~hla-a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 376 (386)
T 1wue_A 320 LNLQFA-SQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 376 (386)
T ss_dssp HHHHHH-TSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHHH-hCCCCCcccccCchhhhhhhccccCCcEEECCEEECCCCCcCCceeCHHHH
Confidence 999997 6888776 3444332 24578878889999999999999999999999865
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-71 Score=551.11 Aligned_cols=347 Identities=17% Similarity=0.270 Sum_probs=303.8
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH---------H
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE---------A 114 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~---------~ 114 (412)
|+|||++|+++.+++|++.+ .+++.+++ ++|||+|++|++||||+. ++...+...+++ +
T Consensus 1 ~~MkI~~i~~~~~~~P~~~~----~~~~~~~~-~~V~v~td~G~~G~GE~~-------~~~~~~~~~i~~~~~~~~~~~l 68 (374)
T 3sjn_A 1 MVLKITDIEVLHLRVPAMDA----DCEWGEDA-VIVKVHTDKGIVGVGEAD-------SSPLVVQACIEAPQTNFYCNGL 68 (374)
T ss_dssp -CCBEEEEEEEEEESSCTTS----CCCTTSEE-EEEEEEETTSCEEEEEES-------SCHHHHHHHHHCCCSBTTBCCH
T ss_pred CCcEEEEEEEEEEeccCcCC----cCcccceE-EEEEEEECCCCEEEEcCC-------CChHHHHHHHHhhhccchHhHH
Confidence 56999999999999887765 33333455 899999999999999932 233333344554 8
Q ss_pred hHHHcCCCCCCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC-CCCeeeeceeecCCCH--
Q 015161 115 CEVLKESPAMALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSP-- 190 (412)
Q Consensus 115 ~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg-~~~~i~~~~~i~~~~~-- 190 (412)
.|.|+|+++.+++.+|+.|++...++. .+....|++||||||||++||.+|+|||+|||| .+++||+| ++..++
T Consensus 69 ~p~liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y--~~~~~~~~ 146 (374)
T 3sjn_A 69 KRLLIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCY--GTFIPADK 146 (374)
T ss_dssp HHHHTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEE--EEECCCSS
T ss_pred HHHHcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCcCCceeEE--eccCCCCC
Confidence 999999999999999999987554432 122346899999999999999999999999999 56799998 344444
Q ss_pred -HHHHHHHHHHHHcCCCEEeEecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHHHHHHHcCCCCCce
Q 015161 191 -AEAAELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 191 -~~~~~~~~~~~~~Gf~~~KiKvG---~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~-~~~A~~~~~~l~~~~l~~~~ 264 (412)
+++.+.+++++++||++||+|+| .++++|++++++||++ ++++.|++|+|++|+ +++|++++++|+++++ .|
T Consensus 147 ~e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i--~~ 224 (374)
T 3sjn_A 147 PEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNL--NW 224 (374)
T ss_dssp GGGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCC--SE
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCc--eE
Confidence 88999999999999999999998 5789999999999997 899999999999999 9999999999999997 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|++++
T Consensus 225 iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~ 300 (374)
T 3sjn_A 225 IEEPVLADSLISYEKLSR----QVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLI 300 (374)
T ss_dssp EECSSCTTCHHHHHHHHH----HCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEEC
T ss_pred EECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999975 57999999999999999999999999999999999998 9999999999999999999
Q ss_pred EccCcchHHHHHHHHHHHccCCCCceecccC-CcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 344 IGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 344 ~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++ +++|++++++||++++||+.++|+.. +..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 301 ~h~~-~~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 368 (374)
T 3sjn_A 301 PHGF-STGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVAVSDAPGLGIELDEELI 368 (374)
T ss_dssp CBCC-SCHHHHHHHHHHHHTCTTCCEEEEECCCCHHHHHSBTTCCCEETTEEECCCSSBTCCCBCHHHH
T ss_pred ecCC-CcHHHHHHHHHHHHhCCCCcEEEecCCcchhhhhhccCCCeeeCcEEECCCCCCCCCCcCHHHH
Confidence 9999 89999999999999999999988753 3334678888889999999999999999999999875
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-70 Score=548.20 Aligned_cols=346 Identities=21% Similarity=0.316 Sum_probs=310.4
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~ 123 (412)
.|||++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+.+.. .+ .....+ +.+.|.|+|+++
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~-~~---~~~~~~~~~l~p~liG~d~ 102 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPK-AM---KYLVPALHDMSDMLAGQPL 102 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSCGG-GH---HHHHHHHHHHHHHHTTSBC
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCCCc-hH---HHHHHHHHHHHHHHCCCCc
Confidence 3899999999999999999999999999999999999999999999999875321 12 222233 568999999999
Q ss_pred CCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC---CCHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI---VSPAEAAELAS 198 (412)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~---~~~~~~~~~~~ 198 (412)
.++ .+|+.|++.. .|+.. ....|++|||+||||++||.+|+|||+||||..++||+|.+++. .+++++.++++
T Consensus 103 ~~~-~~~~~l~~~~~~~g~~g-~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~~~~e~~~~~a~ 180 (390)
T 3ugv_A 103 APA-EIYDKTRKSLHFVGYAG-LSMIAASGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVE 180 (390)
T ss_dssp CHH-HHHHHHHHHTGGGCSST-HHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEEEECSCCCSSCHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHhhCCcc-hHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceEEEEecccccCCCHHHHHHHHH
Confidence 999 9999997643 23321 12468999999999999999999999999999899999999877 68899999999
Q ss_pred HHHHc---CCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 199 KYRKQ---GFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 199 ~~~~~---Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
+++++ ||++||+|+|. ++++|+++|++||++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|
T Consensus 181 ~~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d 258 (390)
T 3ugv_A 181 LKAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGL--EWIEEPVVYDN 258 (390)
T ss_dssp HHHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCC--SEEECCSCTTC
T ss_pred HHHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCccc
Confidence 99999 99999999995 789999999999997 7999999999999999999999999999997 49999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 259 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~--- 331 (390)
T 3ugv_A 259 FDGYAQLRH----DLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHLYPE--- 331 (390)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBSCHH---
T ss_pred HHHHHHHHH----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH---
Confidence 999999975 67899999999999999999999999999999999998 9999999999999999999999853
Q ss_pred HHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 353 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+++++||+.++|+.. +.++++.++++++||++.+|++||||+++|+|.+
T Consensus 332 ---a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 384 (390)
T 3ugv_A 332 ---VGAHVMRVTETAHWLEWQS---WADPILQEPYALSDGDLIVPDKPGLGLDWDEDVV 384 (390)
T ss_dssp ---HHHHHHTTCTTBCCEEECC---TTGGGBSSCCCEETTEEECCSSSBTCCCBCHHHH
T ss_pred ---HHHHHHHhCCCCceeeccc---hhhhhccCCCeeECCEEECCCCCcCCCCcCHHHH
Confidence 6789999999999988753 3467777888999999999999999999999875
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=542.99 Aligned_cols=352 Identities=23% Similarity=0.334 Sum_probs=319.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCce--eeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
|.|||++|+++++++|++.||+++.++ ++.++.++|+|+|++|++||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l~g 80 (378)
T 2qdd_A 1 MSLRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHLLG 80 (378)
T ss_dssp -CCCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHCC
Confidence 459999999999999999999999998 88899999999999999999999987 778888877777777778999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|...+++ .. +|++||||||||+.||..|+|||+||||. ++++|+|++++..+++++.+.+++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~~---~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~ 155 (378)
T 2qdd_A 81 LDPRSLDHVNRVMDLQLPG--HS---YVKSPIDMACWDILGQVAGLPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAE 155 (378)
T ss_dssp CCTTCHHHHHHHHHHHSCS--CH---HHHHHHHHHHHHHHHHHHTCBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhhcc--ch---HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCCCceEEEecCCCHHHHHHHHHH
Confidence 9999999999999655544 22 58999999999999999999999999997 578999999888899999999999
Q ss_pred HHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 200 YRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
++++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+ ++ + |||||++ |++++
T Consensus 156 ~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~--i-~iEqP~~--d~~~~ 229 (378)
T 2qdd_A 156 AAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR--D-WIEQPCQ--TLDQC 229 (378)
T ss_dssp HHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC--C-EEECCSS--SHHHH
T ss_pred HHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC--c-EEEcCCC--CHHHH
Confidence 999999999999996 899999999999997 789999999999999999999999998 76 4 9999998 89999
Q ss_pred HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a 356 (412)
++|++ ++++||++||+++++++++++++.+++|++++|++++| ++++++++++|+++|+++++||+.||+|+.++
T Consensus 230 ~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~~es~i~~aa 305 (378)
T 2qdd_A 230 AHVAR----RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTA 305 (378)
T ss_dssp HHHHT----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHH
T ss_pred HHHHH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCcHHHHHH
Confidence 99974 67899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHccCCCC--ce-ecccCCcccccCCCCC-ceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 357 AGHLSAGLGCF--KF-IDLDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 357 ~~hlaaa~~~~--~~-~e~~~p~~~~~d~~~~-~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++||++++||+ .+ .++ +| .+.+|++.+ +++++||++.+|++||||+++|++.++
T Consensus 306 ~~hlaaa~~~~~~~~~~d~-~~-~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 363 (378)
T 2qdd_A 306 ALHLAASTPEANRLASWLG-HA-HLADDPIPGQGARNRDGLATPPSAPGLGVIPDPEALG 363 (378)
T ss_dssp HHHHHHTSCTTTBCCBCCG-GG-GBSCCSSTTCSCCCBTTEECCCCSSBTCCCCCGGGSC
T ss_pred HHHHHHcCCCcceeccccc-cc-hhhhccccCCCceEECCEEECCCCCcCCCccCHHHHh
Confidence 99999999984 33 455 45 346788888 889999999999999999999999874
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-70 Score=550.74 Aligned_cols=355 Identities=25% Similarity=0.382 Sum_probs=318.6
Q ss_pred ccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHH
Q 015161 41 TQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEV 117 (412)
Q Consensus 41 ~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~ 117 (412)
.....|||++|+++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+. +.|++|+...+...+++ +.|.
T Consensus 15 ~~~~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~ 94 (393)
T 1wuf_A 15 PRGSHMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPL 94 (393)
T ss_dssp ----CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHH
T ss_pred CCCCcCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999864 46778888777766665 7899
Q ss_pred HcCCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCC-CHHHHHHH
Q 015161 118 LKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV-SPAEAAEL 196 (412)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~-~~~~~~~~ 196 (412)
|+|+++.+++.+++.|.. +.|+ . +|++||||||||++||..|+|||+||||.++++|+|.+++.. +++++.++
T Consensus 95 l~G~d~~~~~~l~~~l~~-~~g~--~---~a~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~v~~~~~~g~~~~~e~~~~~ 168 (393)
T 1wuf_A 95 LAQRKIRKPEEIQELFSW-IQGN--E---MAKAAVELAVWDAFAKMEKRSLAKMIGATKESIKVGVSIGLQQNVETLLQL 168 (393)
T ss_dssp HHHCEESSTTHHHHHHTT-SCSC--H---HHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEBCEEECCCSCHHHHHHH
T ss_pred HcCCCccCHHHHHHHHHH-ccCc--h---HHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeEEeCCCCCHHHHHHH
Confidence 999999999999988865 4443 2 489999999999999999999999999977899999998865 58999999
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHH
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~ 276 (412)
++++.++||+++|+|+|. ++|+++|++||++.|++.|++|+|++|++++| +++++|+++++ .|||||++++|+++
T Consensus 169 a~~~~~~G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~ 243 (393)
T 1wuf_A 169 VNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDL--EMIEQPFGTKDFVD 243 (393)
T ss_dssp HHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTC--SEEECCSCSSCSHH
T ss_pred HHHHHHHhhHhheeccCh--HHHHHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCC--eEEECCCCCcCHHH
Confidence 999999999999999984 77999999999988899999999999999999 99999999997 49999999999999
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHH
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~ 355 (412)
+++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|+||+|+.+
T Consensus 244 ~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~a 319 (393)
T 1wuf_A 244 HAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRA 319 (393)
T ss_dssp HHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHH
T ss_pred HHHHHH----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecCCcccHHHHH
Confidence 999974 67899999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 356 FAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 356 a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|++ +++++.+ .+++.+. .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 320 a~~hla-a~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 376 (393)
T 1wuf_A 320 HNIALA-ARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 376 (393)
T ss_dssp HHHHHH-TSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred HHHHHH-hCCCCCcccccCchhhhhhhhcccCCcEEECCEEECCCCCcCCCccCHHHH
Confidence 999997 7888776 4565543 34678878888999999999999999999999865
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-70 Score=547.35 Aligned_cols=349 Identities=19% Similarity=0.255 Sum_probs=297.6
Q ss_pred eEEeEEEEEEEEeccccce-eccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPF-TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf-~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
|||++|+++.+++|++.|| +++.++.+.++.++|||+|++|++||||+.+...++++ ..+...++ .+.|.|+|+++
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~--~~~~~~i~~~l~p~liG~d~ 78 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSD--RLITSCISDCYAPLLLGEDA 78 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCCHHHH--HHHHHHHHHTTHHHHTTSBT
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccccCcH--HHHHHHHHHHHHHHhCCCCh
Confidence 8999999999999999999 99999999999999999999999999999864321221 12223344 58999999999
Q ss_pred CCHHHHHHHHHhhc--CCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCe-eeeceeecC---CCHHHHHHH
Q 015161 124 MALGSVFGVVAGLL--PGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPI---VSPAEAAEL 196 (412)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~-i~~~~~i~~---~~~~~~~~~ 196 (412)
.+++.+|+.|++.. .+.. ......|++||||||||++||.+|+|||+||||..++ +|+|.+++. .+++++.++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~~~~v~~y~s~~~~~~~~~~~~~~~ 158 (372)
T 3tj4_A 79 SDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAG 158 (372)
T ss_dssp TCHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEECTTCCTTSCHHHHHHH
T ss_pred hhHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCCCCCeEEEEecCCccCCCHHHHHHH
Confidence 99999999998642 1211 0113468999999999999999999999999998765 999988432 389999999
Q ss_pred HHHHHHc-CCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 197 ASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 197 ~~~~~~~-Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
+++++++ ||++||+|+| .++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|
T Consensus 159 a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d 236 (372)
T 3tj4_A 159 SARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDD 236 (372)
T ss_dssp HHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCE--EEEESCSCTTC
T ss_pred HHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEECCCCchh
Confidence 9999999 9999999999 5789999999999998 6899999999999999999999999999987 59999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc--Ccch
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG--MVET 350 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~--~~es 350 (412)
++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ |.+
T Consensus 237 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~- 311 (372)
T 3tj4_A 237 VTSHARLAR----NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQ- 311 (372)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTT-
T ss_pred HHHHHHHHh----hcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHH-
Confidence 999999975 67899999999999999999999999999999999998 9999999999999999999999 765
Q ss_pred HHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 351 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+++++||+.++|++ | +.++++.++++++||++.+|++||||+++|++.+
T Consensus 312 -----~~~~l~aa~~~~~~~e~~-~--~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 364 (372)
T 3tj4_A 312 -----VHVHLSYWHPASTILEYI-P--WIKDHFEEPIHVRDGVYKRPEQPGASTTPLAESF 364 (372)
T ss_dssp -----THHHHHHHCTTBCCEEEC-C--SSGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred -----HHHHHhhhCCCCceeeec-h--HHHHhccCCCceeCCEEECCCCCCCCCcCCHHHH
Confidence 378999999999999987 4 3467788889999999999999999999999875
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=541.91 Aligned_cols=353 Identities=19% Similarity=0.316 Sum_probs=319.2
Q ss_pred eEEeEEEEEEEEecccc-ceeccCc-eeeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIA-PFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~-pf~~a~~-~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
|||++|+++++++|++. ||.++.+ +.+.++.++|+|+|++|++||||+.+. +.|++++...+...++.+.|.|+|++
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 83 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLD 83 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999 9999877 578899999999999999999999876 67788887777777777999999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+.+++.+|+.|...++++. +|++||||||||+.||.+|+|||+||||. ++++|+|.+++..+++++.+.+++++
T Consensus 84 ~~~~~~~~~~l~~~~~~~~-----~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~a~~~~ 158 (371)
T 2ps2_A 84 PRRVDRINDAMDDALLGHE-----DAKTAIDVACWDIFGKSVGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYR 158 (371)
T ss_dssp TTCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCEEBEEEECSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999987655432 48999999999999999999999999995 56999999998889999999999999
Q ss_pred HcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHH
Q 015161 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
++||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.| +++++ |||||++ |++++++
T Consensus 159 ~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i---~iE~P~~--~~~~~~~ 233 (371)
T 2ps2_A 159 AKGYKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF---ALEAPCA--TWRECIS 233 (371)
T ss_dssp TTTCCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC---EEECCBS--SHHHHHH
T ss_pred HhChheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC---cCcCCcC--CHHHHHH
Confidence 9999999999999999999999999997 78999999999999999999999999 99974 9999998 8999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+++.++++
T Consensus 234 l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~ 309 (371)
T 2ps2_A 234 LRR----KTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIV 309 (371)
T ss_dssp HHT----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHH
T ss_pred HHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCCCcCHHHHHHHH
Confidence 874 67899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 359 HLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 359 hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
||+++++|+.+ .+++++..+.+|++.++++++||++.+|++||||+++|++.++
T Consensus 310 hlaa~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 364 (371)
T 2ps2_A 310 HLAQTIPERSLRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLGIMPRLDVLG 364 (371)
T ss_dssp HHHTTSCTTTEEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTSCEECHHHHC
T ss_pred HHHHhCCCcccccccccchhhhccccCCCceEECCEEECCCCCCCCCeeCHHHHh
Confidence 99999999864 5666665556788778888999999999999999999998763
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-69 Score=547.28 Aligned_cols=347 Identities=18% Similarity=0.211 Sum_probs=302.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (412)
|||++|+++.+++|+ | ++..++.++|||+|++|++||||+.+. .++++... ..+++ +.|.|+|+++.
T Consensus 1 MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~~~---~~i~~~l~p~LiG~dp~ 68 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P------HVGGMYWIFVKLKTDDGIEGVGEIYSA-TFGPKAMA---PIIDDVFERHLLNRDPH 68 (412)
T ss_dssp CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCC-SSCHHHHH---HHHHHHHHHHTTTSCTT
T ss_pred CEEEEEEEEEEccCC--C------ccCCCceEEEEEEECCCCEEEEeecCC-CCCHHHHH---HHHHHHhHHHhCCCChh
Confidence 899999999999998 4 223468999999999999999999643 23443332 33444 67999999999
Q ss_pred CHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec---------CCCHHHH
Q 015161 125 ALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP---------IVSPAEA 193 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~---------~~~~~~~ 193 (412)
+++.+|+.|++...... ......|+|||||||||++||.+|+|||+||||. +++||+|.++. ..+++++
T Consensus 69 ~~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~e~~ 148 (412)
T 4e4u_A 69 HVERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLA 148 (412)
T ss_dssp CHHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCCBCTTSCBCSSCHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEeccCCcccccccCCCHHHH
Confidence 99999999976422111 1113469999999999999999999999999995 67899997653 4689999
Q ss_pred HHHHHHHHHcCCCEEeEecCCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCC
Q 015161 194 AELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMG 259 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~-------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 259 (412)
++++++++++||++||+|+|.+ +++|++++++||++ ++++.|++|+|++|+.++|++++++|++++
T Consensus 149 ~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~ 228 (412)
T 4e4u_A 149 AECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYD 228 (412)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcC
Confidence 9999999999999999999854 78999999999997 799999999999999999999999999999
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHc
Q 015161 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS 338 (412)
Q Consensus 260 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~ 338 (412)
+ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~ 302 (412)
T 4e4u_A 229 P--LWFEEPVPPGQEEAIAQVAK----HTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVH 302 (412)
T ss_dssp C--SEEECCSCSSCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHT
T ss_pred C--cEEECCCChhhHHHHHHHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999975 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCcEEEccCcchHHHHHHHHHHHccCCCCceeccc-CCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 339 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 339 gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+++++|++ +|+|++++++||++++||+.++|+. ....+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 303 gi~v~~h~~-~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 375 (412)
T 4e4u_A 303 YAQIAPHLY-NGPVGAAASIQLATCTPNFLIQESIMTWGGFHAEVVKTPIRWEDGYIIPSNEPGLGIELDMDVV 375 (412)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHTCTTBCCEEESTTSCHHHHHTBSSCCEEETTEEECCCSSBTSCCBCHHHH
T ss_pred CCEEEecCC-CcHHHHHHHHHHHHhCCCceeeeecCccchhhHhhccCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 999999986 7999999999999999999988843 33334568888889999999999999999999999865
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=546.65 Aligned_cols=348 Identities=17% Similarity=0.191 Sum_probs=302.0
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
+|||++|+++.+++|+ | ++..++.++|||+|++|++||||+.+. .++++... ..+++ +.|.|+|+++
T Consensus 1 ~MkIt~i~~~~v~~pl--p------~~~~~~~~~V~v~td~G~~G~GE~~~~-~~~~~~~~---~~i~~~l~p~liG~dp 68 (404)
T 4e5t_A 1 SMRLSDIETFVVGNPP--P------RHGGRYFIFVKLVTACGITGYGEIYNA-TFGPDLVA---KMAEDVFARQFAGEDP 68 (404)
T ss_dssp -CCEEEEEEEEEECCT--T------CTTCSEEEEEEEEETTSCEEEEEECCC-SSCHHHHH---HHHHHHHHHHTTTSCT
T ss_pred CCEEEEEEEEEeccCC--c------ccCCCceEEEEEEECCCCEEEEeeccC-CCchHHHH---HHHHHHHHHHhcCCCh
Confidence 4899999999999998 4 123468899999999999999999642 23333332 23444 6899999999
Q ss_pred CCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec---------------
Q 015161 124 MALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--------------- 186 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--------------- 186 (412)
.+++.+|+.|++...+.. ......|+|||||||||++||.+|+|||+||||+ +++||+|.+++
T Consensus 69 ~~~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~p~~d~~~~ 148 (404)
T 4e5t_A 69 HHIEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDVYPDPDKPNV 148 (404)
T ss_dssp TCHHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCC----------CCCT
T ss_pred hHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCCcCeEEEEEEecccccccccccccccc
Confidence 999999999976422111 1112469999999999999999999999999995 67899987653
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKN-------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~ 252 (412)
..+++++++++++++++||++||+|+|.+ +++|++++++||++ ++++.|++|+|++|+.++|++++
T Consensus 149 ~~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~ 228 (404)
T 4e5t_A 149 YNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLA 228 (404)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHH
Confidence 45889999999999999999999999854 78999999999997 78999999999999999999999
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHH
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 331 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i 331 (412)
++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++
T Consensus 229 ~~l~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~i 302 (404)
T 4e5t_A 229 RRLEAYDP--LWFEEPIPPEKPEDMAEVAR----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKI 302 (404)
T ss_dssp HHHGGGCC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHH
T ss_pred HHHhhcCC--cEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 99999997 49999999999999999975 67999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc-CCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 332 ~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+++|+++|+++++|++ +|+|++++++||++++||+.++|+. ....+.+|++.++++++||++.+|++||||+++|++.
T Consensus 303 a~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~ 381 (404)
T 4e5t_A 303 AAMAECHSAQIAPHLY-CGPLVALANIQLATCSPNFLVLESIRTFDGFFAELLTTPIRWENGYIIPSQEPGLGHDLNEDV 381 (404)
T ss_dssp HHHHHHTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEEESTTSCTHHHHTBSSCCEEETTEEECCCSSBTSSCBCHHH
T ss_pred HHHHHHcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEecccccchhHHhcCCCCeeeCCEEECCCCCCCCcCCCHHH
Confidence 9999999999999987 7999999999999999999988843 2223456788888999999999999999999999986
Q ss_pred C
Q 015161 411 I 411 (412)
Q Consensus 411 ~ 411 (412)
+
T Consensus 382 ~ 382 (404)
T 4e5t_A 382 A 382 (404)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-70 Score=552.14 Aligned_cols=355 Identities=19% Similarity=0.269 Sum_probs=300.8
Q ss_pred eEEeEEEEEEEEeccccceeccCcee-------------------eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHH
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRL-------------------DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQT 106 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~-------------------~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~ 106 (412)
.||++|+++.+.+|+..||..+.... .....++|||+|++|++||||+.+.. +++...
T Consensus 26 ~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~--~~~~~~- 102 (412)
T 4h1z_A 26 DRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV--APRATM- 102 (412)
T ss_dssp CCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--CHHHHH-
T ss_pred ceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--CHHHHH-
Confidence 49999999999999999986432211 11346999999999999999987532 222222
Q ss_pred HHHHHHH-HhHHHcCCCCCCHHHHHHHHHhhcC--CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeec
Q 015161 107 AMVKASE-ACEVLKESPAMALGSVFGVVAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTD 182 (412)
Q Consensus 107 ~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~--g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~ 182 (412)
..+++ ++|.|+|+|+.+++.+|+.|++... +........|+|||||||||++||.+|+|||+||||.. +++++|
T Consensus 103 --~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~~~~v~~y 180 (412)
T 4h1z_A 103 --EIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAY 180 (412)
T ss_dssp --HHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCCCSEEEEE
T ss_pred --HHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCCCCceEEEE
Confidence 23343 7899999999999999999987542 22222234689999999999999999999999999985 589998
Q ss_pred eee-cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 183 ITI-PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 183 ~~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
.+. +..+++++.+.+++++++||+++|+|+|.+.+.|+++++++|++ +|++.|++|+|++|++++|++++++|+++++
T Consensus 181 ~s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
T 4h1z_A 181 ISGLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGL 260 (412)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCE
T ss_pred eccCCCCcHHHHHHHHHHHHhcCcceeccccccchhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhccccc
Confidence 774 45678889999999999999999999998888999999999997 8999999999999999999999999999997
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCC
Q 015161 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 340 (412)
Q Consensus 261 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi 340 (412)
.|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|+++.|++++++++++|+++|+
T Consensus 261 --~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~GGit~~~kia~~A~~~gi 334 (412)
T 4h1z_A 261 --WFAEAPVRTEDIDGLARVAA----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGHKGITQFMRIGAYAHVHHI 334 (412)
T ss_dssp --EEEECCSCTTCHHHHHHHHH----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred --ceecCCCCccchHHHHHHHh----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCCCChHHHHHHHHHHHHCCC
Confidence 59999999999999999975 689999999999999999999999999999999986339999999999999999
Q ss_pred cEEEccCcchHHHHHHHHHHHccCCCCceecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 341 NLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 341 ~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++|++.+++|++++++|+++++||+.+.|+..+. ...++++.++++++||++.+|++||||+|+|+|++
T Consensus 335 ~v~~h~~~~~~i~~aa~lhl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGve~d~eal 406 (412)
T 4h1z_A 335 KVIPHATIGAGIFLAASLQASAALANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQ 406 (412)
T ss_dssp EECCCCCSSCSHHHHHHHHHHHHCTTBCCEEECHHHHTGGGGGEEECCEEETTEEECCCSSBTSEEECHHHH
T ss_pred cEEecCCcchHHHHHHHHHHHHhCCCCCeeeccccccccchhhccCCCeEECCEEECCCCCCCCeEECHHHH
Confidence 999999999999999999999999999998876543 34567778889999999999999999999999975
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-69 Score=531.98 Aligned_cols=342 Identities=34% Similarity=0.505 Sum_probs=318.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
+|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+.+++|+...+...++.+.|.|+|+++.
T Consensus 1 MmkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~d~~ 80 (345)
T 2zad_A 1 MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVR 80 (345)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTCBGG
T ss_pred CCEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCCChh
Confidence 48999999999999999999999999999999999999999999999998876667788777776677789999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
+++.+|+.| ..+.++ .+|++|||+||||+.||.+|+|||+||||.++++|+|.+++..+++++.+.+++++++|
T Consensus 81 ~~~~~~~~l-~~~~~~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G 154 (345)
T 2zad_A 81 NYARIFEIT-DRLFGF-----PSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEG 154 (345)
T ss_dssp GHHHHHHHH-TTCTTS-----HHHHHHHHHHHHHHHHHHHTSCHHHHTTCCCSEEEBCEEECSCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHH-HHhccc-----hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcC
Confidence 999999998 433222 25899999999999999999999999999778999999998889999999999999999
Q ss_pred CCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc--eeecCCCCCCHHHHHHhHH
Q 015161 205 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV--LFEQPVHRDDWEGLGHVSH 282 (412)
Q Consensus 205 f~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~--~iEeP~~~~d~~~~~~l~~ 282 (412)
|+++|+|+|.++++|++++++||++++++.|++|+|++|+.++|+++++.|+++++ . |||||++++|++++++|++
T Consensus 155 f~~iKik~g~~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~~~iE~P~~~~~~~~~~~l~~ 232 (345)
T 2zad_A 155 FRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGI--DIAVYEQPVRREDIEGLKFVRF 232 (345)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTC--CCSEEECCSCTTCHHHHHHHHH
T ss_pred cCEEEEeecCCHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeeeCCCCcccHHHHHHHHH
Confidence 99999999998999999999999998899999999999999999999999999986 7 9999999999999999975
Q ss_pred HhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHH
Q 015161 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 283 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hla 361 (412)
++++||++||++++.++++++++.+++|++|+|+++ | ++++++++++|+++|+++++||+.||+++.++++|++
T Consensus 233 ----~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 307 (345)
T 2zad_A 233 ----HSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFA 307 (345)
T ss_dssp ----HSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHH
Confidence 578999999999999999999999999999999999 9 9999999999999999999999999999999999999
Q ss_pred ccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCC
Q 015161 362 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 399 (412)
Q Consensus 362 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~ 399 (412)
+++||+.++|+++|+.+.+|++.++++++||++.+|++
T Consensus 308 a~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~ 345 (345)
T 2zad_A 308 LGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345 (345)
T ss_dssp HHHCCCSEECCCGGGGBSSCCCCCSSEEETTEEECCCC
T ss_pred HcCCCCceeecCCchhhhhccccCCcEEECCEEeCCCC
Confidence 99999999999998777788988889999999999974
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-69 Score=537.85 Aligned_cols=353 Identities=18% Similarity=0.281 Sum_probs=320.2
Q ss_pred eeeEEeEEEEEEEEecccc-ceeccCce-eeeeeEEEEEEEECCCcEEEEEeccC-CccCcccHHHHHHHHHHHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIA-PFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVL-PHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~-pf~~a~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
|.|||++|+++.+++|++. ||+++.++ .+.++.++|+|+|++|.+||||+.+. +.|++|+...+...++.++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g 80 (379)
T 2rdx_A 1 MSLRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLG 80 (379)
T ss_dssp -CCCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHHcC
Confidence 4599999999999999999 99999998 78899999999999999999999986 677777765555566678999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~ 199 (412)
+++.+++.+|+.|...+.| . .+|++||||||||+.||..|+|||+||||. ++++|+|++++..+++++.+.+++
T Consensus 81 ~d~~~~~~~~~~l~~~~~g--~---~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~a~~ 155 (379)
T 2rdx_A 81 QDPRQVARMERLMDHLVQG--H---GYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELAR 155 (379)
T ss_dssp SCTTCHHHHHHHHHHHSSS--C---HHHHHHHHHHHHHHHHHHHTCBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHHhHHHhCCCHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHH
Confidence 9999999999999654444 2 258999999999999999999999999996 579999999988899999999999
Q ss_pred HHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
++++||+.+|+|+|.+++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ |||||++ |+++++
T Consensus 156 ~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iE~P~~--~~~~~~ 230 (379)
T 2rdx_A 156 HRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY---ILEQPCR--SYEECQ 230 (379)
T ss_dssp HHHTTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC---EEECCSS--SHHHHH
T ss_pred HHHcCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe---EEeCCcC--CHHHHH
Confidence 999999999999998899999999999997 6899999999999999999999999999974 9999998 899999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||+++++++++++++.+++|++++|++++| ++++++++++|+++|+++++||++||+++.+++
T Consensus 231 ~l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~ 306 (379)
T 2rdx_A 231 QVRR----VADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAV 306 (379)
T ss_dssp HHHT----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSHHHHHHH
T ss_pred HHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEeeccCcHHHHHHH
Confidence 9874 67899999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHccCCCCcee---cccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 358 GHLSAGLGCFKFI---DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 358 ~hlaaa~~~~~~~---e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+|++++++|+.+. ++ +| ++.+|++.++++++||++.+|++||||+++|++.++
T Consensus 307 ~~laaa~~~~~~~~~~~~-~~-~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 362 (379)
T 2rdx_A 307 AHFAASTPEEFLINSTDL-MN-YNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLG 362 (379)
T ss_dssp HHHHHTSCTTTEEEECCG-GG-GBSSCSEEECCEEETTEEECCCSSBTSEEECHHHHC
T ss_pred HHHHHcCCCccccccccc-cc-hhhhccccCCceEECCEEEcCCCCcCCeeeCHHHHh
Confidence 9999999997654 33 45 336788878889999999999999999999998753
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-69 Score=551.48 Aligned_cols=346 Identities=15% Similarity=0.233 Sum_probs=304.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
+|||++|+++.++.|+. + +..++.++|||+|++|++||||+.+.+. ..+++. ..+++ +.|.|+|+|+
T Consensus 1 mMkIt~i~~~~~~~p~~-----~---~~~~~~v~V~v~Td~G~~G~GE~~~~~~-~~~~v~---~~i~~~l~p~LiG~dp 68 (433)
T 3rcy_A 1 MVKLRDLDIIVTAPPAP-----G---WGGRYWILVKLTTDDGITGWGECYAASV-GPEAMR---AVIEDVFARHMEGENP 68 (433)
T ss_dssp -CCEEEEEEEEECCCTT-----C---TTCSCEEEEEEEETTSCEEEEEECCCSS-CHHHHH---HHHHHHHHHHTTTSCT
T ss_pred CCeEEEEEEEEEcCCCC-----c---cCCceEEEEEEEECCCCEEEEeccCCCC-CHHHHH---HHHHHHHHHHhCCCCc
Confidence 48999999999999873 2 2236889999999999999999876442 333332 33444 8999999999
Q ss_pred CCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee---c-------CCCH
Q 015161 124 MALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---P-------IVSP 190 (412)
Q Consensus 124 ~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i---~-------~~~~ 190 (412)
.+++.+|+.|++.. .+... ..+.|+|||||||||++||.+|+|||+||||+ +++|++|.++ + ..++
T Consensus 69 ~~ie~~~~~l~~~~~~~~g~~-~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~g~~~~~~~~~~ 147 (433)
T 3rcy_A 69 ENIELMFRRVYSSGFTQRPDL-TAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSA 147 (433)
T ss_dssp TCHHHHHHHHHHTTTCCSCCH-HHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSSEEEEEECCCCTTSCHHHHTTCH
T ss_pred ccHHHHHHHHHhcccccCCch-HHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeEEEEEEEcccCCcccccCCCCH
Confidence 99999999998742 22220 12469999999999999999999999999995 6789999865 2 2689
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~-------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
+++++++++++++||++||+|+|. +++.|++++++||++ ++++.|++|+|++|++++|++++++|+
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le 227 (433)
T 3rcy_A 148 DMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIE 227 (433)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhh
Confidence 999999999999999999999973 467899999999997 899999999999999999999999999
Q ss_pred cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHH
Q 015161 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 257 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A 335 (412)
++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|
T Consensus 228 ~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA 301 (433)
T 3rcy_A 228 PYSP--LWYEEPVPPDNVGAMAQVAR----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMA 301 (433)
T ss_dssp GGCC--SEEECCSCTTCHHHHHHHHH----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHH
T ss_pred hcCC--CEEECCCChhhHHHHHHHHh----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHH
Confidence 9997 49999999999999999975 67899999999999999999999999999999999998 99999999999
Q ss_pred HHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 336 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 336 ~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+++++|++ +|+|++++++||++++||+.++|++.+ .+.++++.++++++||++.+|++||||+++|++.+
T Consensus 302 ~~~gv~~~~h~~-~s~i~~aa~lhlaaa~pn~~~~E~~~~-~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~~~l 375 (433)
T 3rcy_A 302 EVYNAQMAPHLY-AGPVEWAANVHFAASIPNILMCESIET-PFHDALIKGSIRVEGGYITPPEAPGLGIEVDEALA 375 (433)
T ss_dssp HTTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEECCCC-HHHHHHTTTCSCEETTEECCCCSSBTCCCCCHHHH
T ss_pred HHcCCEEEecCC-CCHHHHHHHHHHHHHhccCcEEEeccc-hhhhhhcCCCceEECCEEEcCCCCcCCcccCHHHH
Confidence 999999999985 999999999999999999999998775 44567788889999999999999999999999865
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-69 Score=545.45 Aligned_cols=344 Identities=15% Similarity=0.182 Sum_probs=302.3
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
+.|||++|+++.+. | + ..+.++|||+|++|++||||+.+.. +.+++ ...+++ +.|.|+|++
T Consensus 4 ~~mkIt~v~~~~~~-----~-----~---~~~~~~V~v~td~G~~G~GE~~~~~--~~~~~---~~~i~~~l~p~liG~d 65 (401)
T 3sbf_A 4 KETIISDIHCIITK-----P-----D---RHNLITVVVETNEGVTGFGCATFQQ--RPLAV---KTMVDEYLKPILIGKN 65 (401)
T ss_dssp -CCBEEEEEEEEEC-----S-----S---SSCEEEEEEEETTSCEEEEECCCTT--SHHHH---HHHHHHTHHHHHTTSB
T ss_pred CCeEEEEEEEEEEc-----C-----C---CceEEEEEEEeCCCCEEEEccccCC--CHHHH---HHHHHHHHHHHHcCCC
Confidence 56999999998763 1 1 1267999999999999999987532 33333 234555 899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||. ++++|+|.+++..+++++.+++++++
T Consensus 66 ~~~~e~~~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 145 (401)
T 3sbf_A 66 ANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFL 145 (401)
T ss_dssp TTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCcCCeeeEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999874321111123469999999999999999999999999997 56899999888889999999999999
Q ss_pred HcCCCEEeEecCCC------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 202 KQGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~------------------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
++||++||+|+|.+ ++.|++++++||++ ++++.|++|+|++|++++|++++++|+
T Consensus 146 ~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~ 225 (401)
T 3sbf_A 146 EKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVE 225 (401)
T ss_dssp HTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHG
T ss_pred HcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999843 57899999999997 799999999999999999999999999
Q ss_pred cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHH
Q 015161 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 257 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A 335 (412)
++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|
T Consensus 226 ~~~i--~~iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A 299 (401)
T 3sbf_A 226 QYKP--YFIEDILPPNQTEWLDNIRS----QSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLC 299 (401)
T ss_dssp GGCC--SCEECSSCTTCGGGHHHHHT----TCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHH
T ss_pred hcCC--CEEECCCChhHHHHHHHHHh----hCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHH
Confidence 9997 49999999999999999874 68999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 336 RASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 336 ~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 300 ~~~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 376 (401)
T 3sbf_A 300 QNFGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAA 376 (401)
T ss_dssp HHHTCEECCCCCTTSCHHHHHHHHHHHHHSTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSSCCCCHHHH
T ss_pred HHcCCEEEecCCcccchHHHHHHHHHHHhCCCcceeeccCCchhhHhhcCCCCeeeCCEEECCCCCCCCceECHHHH
Confidence 9999999999996 799999999999999999999998765445567888889999999999999999999999865
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-69 Score=549.24 Aligned_cols=350 Identities=19% Similarity=0.270 Sum_probs=304.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeee-eeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
.+|||++|+++++++| ..||.++.+.... .+.++|+|+|++|++||||+.. .+.+ ...++.+.|.|+|++
T Consensus 21 ~~mkI~~i~~~~v~~P-~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~v---~~~i~~l~p~LiG~d 91 (441)
T 3vc5_A 21 QSMLIREVRVTPVAFR-DPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYG-----DLAH---LEQVRAAAARLPGLD 91 (441)
T ss_dssp --CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEEC-----CHHH---HHHHHHHHHTCTTSB
T ss_pred cCcEEEEEEEEEEecC-CcccccccCccccceeEEEEEEEECCCCEEEEeCCC-----hHHH---HHHHHHHHHHhCCCC
Confidence 4599999999999999 8999999876543 5679999999999999999852 2222 234567899999999
Q ss_pred CCCHHHHHHHHHhhcCCCc------c-h------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee---
Q 015161 123 AMALGSVFGVVAGLLPGHQ------F-A------SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--- 185 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~------~-~------~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--- 185 (412)
+.+++.+|+.|++.+.++. . . ....|++|||+||||++||.+|+|||+||||. +++||+|.++
T Consensus 92 ~~~~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~v~~~a~~~~~ 171 (441)
T 3vc5_A 92 VYALHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYK 171 (441)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEBCEEEECB
T ss_pred hhHHHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEeeccc
Confidence 9999999999987643211 0 0 13369999999999999999999999999997 5789985432
Q ss_pred -------------cCCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Q 015161 186 -------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 186 -------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~ 250 (412)
+..+|++++++++++++ +||++||+|+|. ++++|+++|++||++.|++.|++|+|++|++++|++
T Consensus 172 ~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~ 251 (441)
T 3vc5_A 172 WAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR 251 (441)
T ss_dssp CSBCTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred cccCCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence 12689999999999887 499999999995 889999999999998899999999999999999999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHH
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 329 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l 329 (412)
++++|+++ + .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++
T Consensus 252 ~~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GGitea~ 322 (441)
T 3vc5_A 252 VGRALDGV-L--EYLEDPTP--GIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSA 322 (441)
T ss_dssp HHHHTTTT-C--SEEECCSS--SHHHHHHHHT----TSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTSHHHHH
T ss_pred HHHHHHHH-H--HHhhccCC--CHHHHHHHHh----cCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCCHHHHH
Confidence 99999998 7 49999995 7999999874 68999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCcee-cccCCcccccCCC-CCceeeeCcEEeeCCCCCcccccC
Q 015161 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 330 ~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+++++|+++|+++++|++.+++|++++++||++++||+.+. +++.|+...+|++ .++++++||++.+|++||||+++|
T Consensus 323 kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGLGveld 402 (441)
T 3vc5_A 323 HIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGLGVELD 402 (441)
T ss_dssp HHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGGTTCCSBCTTSCCCBTTEEECCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcceeecccchhhcccccccCCCceEECCEEECCCCCCCCceEC
Confidence 99999999999999999999999999999999999998875 5555765545665 457899999999999999999999
Q ss_pred CCCC
Q 015161 408 WDNI 411 (412)
Q Consensus 408 ~~~~ 411 (412)
+|+|
T Consensus 403 ~~~l 406 (441)
T 3vc5_A 403 RDAL 406 (441)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-69 Score=547.61 Aligned_cols=349 Identities=19% Similarity=0.292 Sum_probs=303.9
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeee-eeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
+.|||++|+++++++| ..|+.++.+.... .+.++|+|+|++|++||||+.. .+.+ ...++.+.|.|+|++
T Consensus 26 ~~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~~---~~~i~~l~p~LiG~d 96 (445)
T 3vdg_A 26 NRIRITGARVTPVAFA-DPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYA-----DTVH---LERLQAAAHAIVGRS 96 (445)
T ss_dssp GCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECC-----CHHH---HHHHHHHHHHHTTCB
T ss_pred CCCEEEEEEEEEEecC-CccccccccccccceeEEEEEEEECCCCeEEEeCCC-----hHHH---HHHHHHHHHHhCCCC
Confidence 4699999999999999 8899998876443 5679999999999999999852 2322 234467899999999
Q ss_pred CCCHHHHHHHHHhhcCCCc------c-h------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee---
Q 015161 123 AMALGSVFGVVAGLLPGHQ------F-A------SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--- 185 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~------~-~------~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--- 185 (412)
+.+++.+|+.|++.+.++. . . ....|++|||+||||++||.+|+|||+||||. +++||+|.++
T Consensus 97 ~~~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~~~ 176 (445)
T 3vdg_A 97 VFSTNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYLFYK 176 (445)
T ss_dssp TTCHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSSSEEEBCEEEECB
T ss_pred hhhHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccc
Confidence 9999999999988643211 0 0 23469999999999999999999999999997 5789985432
Q ss_pred -------------cCCCHHHHHHHHHHHHHc-CCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Q 015161 186 -------------PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 186 -------------~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~ 250 (412)
+..+++++++++++++++ ||++||+|+|. ++++|+++|++||++.|++.|++|+|++|++++|++
T Consensus 177 ~~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 177 WAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSSSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred ccccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 126899999999998875 99999999995 889999999999998899999999999999999999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHH
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 329 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l 329 (412)
++++|+++ + .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++
T Consensus 257 ~~~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGitea~ 327 (445)
T 3vdg_A 257 VAAGLEGV-L--EYLEDPTP--GLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSR 327 (445)
T ss_dssp HHHHTTTT-C--SEEECCSS--SHHHHHHHHH----HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHHHHH
T ss_pred HHHHHhhH-H--HeeeCCCC--CHHHHHHHHh----cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHHHHH
Confidence 99999998 7 49999995 7999999975 68999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCcee-cccCCcccccCCC-CCceeeeCcEEeeCCCCCcccccC
Q 015161 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 330 ~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~-~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+++++|+++|+++++|++.+++|++++++||++++||+.+. +...|+.. +|.+ .++++++||++.+|++||||+|+|
T Consensus 328 kia~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~-~d~~~~~~~~~~~G~i~~p~~PGLGveld 406 (445)
T 3vdg_A 328 LLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRH-EDVVAPGALNFCDGEVQVPATPGLGVEID 406 (445)
T ss_dssp HHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCCSCBCCCGGGCC-CCSBCSSSSCEETTEEECCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcceeeccccchhh-cccccCCCceEECCEEECCCCCcCCCcCC
Confidence 99999999999999999999999999999999999998874 44446544 4544 567899999999999999999999
Q ss_pred CCCC
Q 015161 408 WDNI 411 (412)
Q Consensus 408 ~~~~ 411 (412)
+|+|
T Consensus 407 ~~~l 410 (445)
T 3vdg_A 407 EDAL 410 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-69 Score=543.17 Aligned_cols=345 Identities=19% Similarity=0.211 Sum_probs=303.5
Q ss_pred ceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
...|||++|+++.+. | .++.++|||+|++|++||||+.+.. ..+. +...+++ +.|.|+|+
T Consensus 14 ~~~mkIt~v~~~~~~-----~---------~~~~~~V~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~ 74 (418)
T 3r4e_A 14 GSHMKITAARVIITC-----P---------GRNFVTLKIETDQGVYGIGDATLNG--RELS---VVAYLQEHVAPCLIGM 74 (418)
T ss_dssp TCCCCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTHHHHHTTS
T ss_pred CCCCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhcCC
Confidence 356999999997653 1 1367999999999999999986532 2222 2334555 89999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHH
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKY 200 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~ 200 (412)
++.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||+ +++||+|.+++..+++++.++++++
T Consensus 75 dp~~ie~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~ 154 (418)
T 3r4e_A 75 DPRRIEDIWQYVYRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHY 154 (418)
T ss_dssp CTTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCccCCeeeEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999875321111123468999999999999999999999999997 5799999998888999999999999
Q ss_pred HHcCCCEEeEecCC---------------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHH
Q 015161 201 RKQGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQ 246 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~---------------------------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~ 246 (412)
+++||++||+|+|. +++.|+++|++||++ ++++.|++|+|++|+.+
T Consensus 155 ~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~ 234 (418)
T 3r4e_A 155 IDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQ 234 (418)
T ss_dssp HHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHH
T ss_pred HHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHH
Confidence 99999999999984 157899999999997 79999999999999999
Q ss_pred HHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-H
Q 015161 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 325 (412)
Q Consensus 247 ~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-i 325 (412)
+|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +
T Consensus 235 ~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGi 308 (418)
T 3r4e_A 235 EAANLGKMLEPYQL--FWLEDCTPAENQEAFRLVRQ----HTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGL 308 (418)
T ss_dssp HHHHHHHHHGGGCC--SEEESCSCCSSGGGGHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHH
T ss_pred HHHHHHHHHHhhCC--CEEECCCCccCHHHHHHHHh----cCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCH
Confidence 99999999999997 49999999999999999975 67899999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccc
Q 015161 326 LGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 404 (412)
Q Consensus 326 t~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~ 404 (412)
+++++++++|+++|+++++|++. +|+|++++++||++++||+.++|++.+..+.++++.++++++||++.+|++||||+
T Consensus 309 t~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv 388 (418)
T 3r4e_A 309 THLRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGETPGHGV 388 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBSEEEETTEEEECCCSBSSB
T ss_pred HHHHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCC
Confidence 99999999999999999999997 79999999999999999999999876554567788888999999999999999999
Q ss_pred ccCCCCCC
Q 015161 405 FLHWDNIA 412 (412)
Q Consensus 405 ~ld~~~~~ 412 (412)
++|++.++
T Consensus 389 eld~~~l~ 396 (418)
T 3r4e_A 389 DIDEELAA 396 (418)
T ss_dssp CCCHHHHT
T ss_pred ccCHHHHH
Confidence 99998764
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=547.11 Aligned_cols=353 Identities=18% Similarity=0.188 Sum_probs=302.8
Q ss_pred CcccccccccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH
Q 015161 33 TSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS 112 (412)
Q Consensus 33 ~~~~~~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~ 112 (412)
..|.|...+ ++|||++|+++.+. | + ..+.++|||+|++|++||||+.+.. +.+++ ...++
T Consensus 16 ~~~~~~~~~--~~mkIt~v~~~~~~-----~-----~---~~~~v~V~v~td~Gi~G~GE~~~~~--~~~~~---~~~i~ 75 (422)
T 3tji_A 16 ENLYFQSMM--TPVIIKNIECFITR-----P-----D---RHNLVTVRVTTEQGITGHGCATFQQ--RPLAV---KTLVD 75 (422)
T ss_dssp --------C--CCCBEEEEEEEEEC-----S-----S---SSCEEEEEEEETTSCCEEEECCCTT--SHHHH---HHHHH
T ss_pred cceeccccC--CCcEEEEEEEEEEc-----C-----C---CccEEEEEEEECCCCEEEEeccCCC--CHHHH---HHHHH
Confidence 345554422 36999999998763 1 1 1267999999999999999987532 33333 23455
Q ss_pred H-HhHHHcCCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCH
Q 015161 113 E-ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSP 190 (412)
Q Consensus 113 ~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~ 190 (412)
+ +.|.|+|+++.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||+ +++||+|.+++..++
T Consensus 76 ~~l~p~LiG~dp~~ie~~~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~ 155 (422)
T 3tji_A 76 EYLQPLMIGRDANNIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETL 155 (422)
T ss_dssp HTHHHHHTTSBTTCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSH
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeCCCCH
Confidence 5 89999999999999999999874321111123469999999999999999999999999997 568999998888899
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCCC------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGKN------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKP 245 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~~------------------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~ 245 (412)
+++.+++++++++||++||+|+|.. ++.|++++++||++ ++++.|++|+|++|++
T Consensus 156 e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~ 235 (422)
T 3tji_A 156 EALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFP 235 (422)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 9999999999999999999999842 56899999999997 8999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++|
T Consensus 236 ~~A~~~~~~Le~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GG 309 (422)
T 3tji_A 236 QQAVQLAKQLEPFQP--YFIEDILPPQQSAWLEQVRQ----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGG 309 (422)
T ss_dssp HHHHHHHHHHGGGCC--SEEECCSCGGGGGGHHHHHH----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTS
T ss_pred HHHHHHHHHHHhhCC--CeEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCC
Confidence 999999999999997 49999999999999999975 67899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG 403 (412)
++++++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+..+.+|++.++++++||++.+|++||||
T Consensus 310 it~~~kia~lA~a~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlG 389 (422)
T 3tji_A 310 ITPALKLAHLCQAFGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAAIQEFIPRSATTNDVFPGAPEVKEGFVYPPVQPGIG 389 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSC
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCCccHHHHHHHHHHHHhCCCCceEeccCcchhhhhccCCCceeECCEEECCCCCcCC
Confidence 999999999999999999999995 7999999999999999999999987654445678888899999999999999999
Q ss_pred cccCCCCC
Q 015161 404 GFLHWDNI 411 (412)
Q Consensus 404 ~~ld~~~~ 411 (412)
+++|++.+
T Consensus 390 ve~d~~~l 397 (422)
T 3tji_A 390 VGFNEALA 397 (422)
T ss_dssp CCCCHHHH
T ss_pred CCcCHHHH
Confidence 99999865
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-69 Score=544.47 Aligned_cols=343 Identities=18% Similarity=0.219 Sum_probs=302.0
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.|||++|+++.+. | .++.++|||+|++|++||||+.+.. ..++ +...+++ +.|.|+|+++
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~dp 82 (424)
T 3v3w_A 22 SMKIVDAKVIVTC-----P---------GRNFVTLKIVTDQGIYGIGDATLNG--REKS---VVSYLEDYLIPVLIGRDP 82 (424)
T ss_dssp -CCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTHHHHHTTSCT
T ss_pred CCEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhcCCCh
Confidence 3899999997763 1 1367999999999999999986532 2222 2334555 8999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||+ +++||+|.+++..+++++.++++++++
T Consensus 83 ~~ie~i~~~~~~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 162 (424)
T 3v3w_A 83 QQIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKD 162 (424)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcCCCceeEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999999875321111123468999999999999999999999999997 568999998888899999999999999
Q ss_pred cCCCEEeEecCC---------------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHH
Q 015161 203 QGFTTLKLKVGK---------------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 248 (412)
Q Consensus 203 ~Gf~~~KiKvG~---------------------------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A 248 (412)
+||++||+|+|. +++.|+++|++||++ ++++.|++|+|++|++++|
T Consensus 163 ~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A 242 (424)
T 3v3w_A 163 KGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEA 242 (424)
T ss_dssp TTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Confidence 999999999983 157899999999997 7999999999999999999
Q ss_pred HHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHH
Q 015161 249 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 327 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~ 327 (412)
++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++
T Consensus 243 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~ 316 (424)
T 3v3w_A 243 ARLGKALEPYHL--FWMEDAVPAENQESFKLIRQ----HTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQ 316 (424)
T ss_dssp HHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEECCCChHhHHHHHHHHh----hCCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHHH
Confidence 999999999997 49999999999999999975 67899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccccc
Q 015161 328 ALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 406 (412)
Q Consensus 328 ~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~l 406 (412)
+++++++|+++|+++++|++. +|+|++++++||++++||+.++|++.+..+.++++.++++++||++.+|++||||+++
T Consensus 317 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 396 (424)
T 3v3w_A 317 MRRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAYTFNDGYFTPGEKPGHGVDI 396 (424)
T ss_dssp HHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCC
T ss_pred HHHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCccc
Confidence 999999999999999999997 7999999999999999999999987655456778888899999999999999999999
Q ss_pred CCCCCC
Q 015161 407 HWDNIA 412 (412)
Q Consensus 407 d~~~~~ 412 (412)
|+++++
T Consensus 397 d~~~l~ 402 (424)
T 3v3w_A 397 DEKLAA 402 (424)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998764
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-69 Score=543.11 Aligned_cols=347 Identities=18% Similarity=0.241 Sum_probs=297.7
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHH------HHHHhHH
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEACEV 117 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~~~ 117 (412)
++|||++|+++++++|+ +...++.++|||+|++|++||||+.+.+ +.....+.. ++.+.|.
T Consensus 3 ~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~p~ 69 (394)
T 3mqt_A 3 LGANIVSVEFIPVNVAA---------TNWSENTVIVKVTDENGVYGLGEADGPP----ECMKAFSEIENEHKWLNNIKEA 69 (394)
T ss_dssp --CCEEEEEEEEEECC--------------CEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCGGGG
T ss_pred CCCeEeEEEEEEEecCC---------CCCCccEEEEEEEECCCCEEEEEECCcH----HHHHHHHhcccchhhHHHHHHH
Confidence 35999999999999997 2235689999999999999999997532 221111110 1127899
Q ss_pred HcCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec--C-C--C
Q 015161 118 LKESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--I-V--S 189 (412)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--~-~--~ 189 (412)
|+|+++.+++.+|+.|++.. .|... ....|+|||||||||++||.+|+|||+||||. ++++|+|.+++ . . +
T Consensus 70 liG~dp~~~e~~~~~l~~~~~~~g~~g-~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~ 148 (394)
T 3mqt_A 70 VIGRDPLEFRANYNRMYDTTKWIGMRG-LGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYPSVAADAT 148 (394)
T ss_dssp TTTSCTTCHHHHHHHHHHHTTTTCSSB-HHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSSBCCEEECCCCCCTTCC
T ss_pred hCCCChhHHHHHHHHHHHhhhhhCCcc-HHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCCCCeEEEEEEecCCCCCCcc
Confidence 99999999999999998753 22221 12468999999999999999999999999997 46899998876 3 2 3
Q ss_pred HH----HHHHHHHHHHHcCCCEEeE-ecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHcCC
Q 015161 190 PA----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYEMG 259 (412)
Q Consensus 190 ~~----~~~~~~~~~~~~Gf~~~Ki-KvG---~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~-~~~~A~~~~~~l~~~~ 259 (412)
++ ++.+++++++++||++||+ |+| .++++|++++++||++ ++++.|++|+|++| +.++|++++++|++++
T Consensus 149 ~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~ 228 (394)
T 3mqt_A 149 LSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDID 228 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGC
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcC
Confidence 44 5667888999999999999 999 6899999999999997 89999999999999 9999999999999999
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHc
Q 015161 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS 338 (412)
Q Consensus 260 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~ 338 (412)
+ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~ 302 (394)
T 3mqt_A 229 L--YFIEACLQHDDLIGHQKLAA----AINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHH 302 (394)
T ss_dssp C--SEEESCSCTTCHHHHHHHHH----HSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHH
T ss_pred C--eEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 7 49999999999999999975 67899999999999999999999999999999999998 99999999999999
Q ss_pred CCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCc----ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 339 GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 339 gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+++++|++ +|+|+.++++||++++||+.++|++.+. .+.++++.++++++||++.+|++||||+++|++.+
T Consensus 303 gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l 378 (394)
T 3mqt_A 303 NAQLMPHNW-KTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSDKPGLGIELNIEFV 378 (394)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCCCCSBTCCCBCHHHH
T ss_pred CCEEeccCC-CchHHHHHHHHHHHhCCCCceEEecCcccccchhHHhhccCCCcccCCEEECCCCCCCCCCcCHHHH
Confidence 999999998 9999999999999999999999987662 23467778888999999999999999999999875
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-69 Score=536.74 Aligned_cols=351 Identities=23% Similarity=0.313 Sum_probs=308.8
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g 120 (412)
++|||++|+++.+++|++.||+++.++++.++.++|+|+| +|++||||+.+. +++++|++..+...+++ +.|.++|
T Consensus 6 ~~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g 84 (375)
T 1r0m_A 6 RMFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILG 84 (375)
T ss_dssp CCEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTT
T ss_pred cccEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999999999999999 599999999864 56788888777776765 8899999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC-CCHHHHHHHHHH
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASK 199 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~ 199 (412)
+++.+++.+++.+.. +.|+ .+|++|||+||||+.||..|+|||+||||..++++++++++. .+++++.+.+++
T Consensus 85 ~d~~~~~~l~~~~~~-~~g~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~ 158 (375)
T 1r0m_A 85 QTFANPEAVSDALGS-YRGN-----RMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRR 158 (375)
T ss_dssp CEESSHHHHHHTTTT-SCSC-----HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-ccCc-----hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCCHHHHHHHHHH
Confidence 999999888876632 3332 148999999999999999999999999998778888888877 489999999999
Q ss_pred HHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+.++||+++|+|++ ++.|++++++||++.+++.|++|+|++|+.++ ++++++|+++++ .|||||++++|++++++
T Consensus 159 ~~~~G~~~iKik~~--~~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 233 (375)
T 1r0m_A 159 HVEQGYRRIKLKIK--PGWDVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDL--TYIEQPLAWDDLVDHAE 233 (375)
T ss_dssp HHHTTCSCEEEECB--TTBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCC--SCEECCSCTTCSHHHHH
T ss_pred HHHhcccEEEEecC--hHHHHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHH
Confidence 99999999999996 47899999999997789999999999999999 999999999997 49999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+++.++++
T Consensus 234 l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~ 309 (375)
T 1r0m_A 234 LAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNI 309 (375)
T ss_dssp HHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHH
T ss_pred HHH----hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHH
Confidence 975 57899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 359 HLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 359 hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|++ +++|+.+ +|++.+. .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 310 hla-a~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 363 (375)
T 1r0m_A 310 HLS-TLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFL 363 (375)
T ss_dssp HHT-TSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred HHH-cCCCCCcccccCCchhhhhhhcccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 999 9999998 8987652 35678888888999999999999999999999865
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-69 Score=543.87 Aligned_cols=343 Identities=17% Similarity=0.208 Sum_probs=302.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.|||++|+++.+. | .++.++|||+|++|++||||+.+.. ..+. +...+++ +.|.|+|+++
T Consensus 23 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~dp 83 (425)
T 3vcn_A 23 MLKIIDAKVIVTC-----P---------GRNFVTLKITTEDGITGVGDATLNG--RELS---VVSFLQDHMVPSLIGRDA 83 (425)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHHH---HHHHHHHTTHHHHTTCBT
T ss_pred CCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChHH---HHHHHHHHHHHHhCCCCh
Confidence 5899999997653 1 1367999999999999999986532 2222 2334555 8999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||+ +++||+|.+++..+++++.++++++++
T Consensus 84 ~~ie~i~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 163 (425)
T 3vcn_A 84 HQIEDIWQFFYRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIEDTIAEAVKYKA 163 (425)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSSSSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999999875321111123468999999999999999999999999997 578999998888899999999999999
Q ss_pred cCCCEEeEecCC----------------C-----------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHH
Q 015161 203 QGFTTLKLKVGK----------------N-----------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 248 (412)
Q Consensus 203 ~Gf~~~KiKvG~----------------~-----------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A 248 (412)
+||++||+|+|. + ++.|+++|++||++ ++++.|++|+|++|++++|
T Consensus 164 ~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A 243 (425)
T 3vcn_A 164 MGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEA 243 (425)
T ss_dssp TTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHH
Confidence 999999999983 0 46789999999997 7999999999999999999
Q ss_pred HHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHH
Q 015161 249 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 327 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~ 327 (412)
++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++
T Consensus 244 ~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 317 (425)
T 3vcn_A 244 ARLGKDLEPYRL--FWLEDSVPAENQAGFRLIRQ----HTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITN 317 (425)
T ss_dssp HHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CEEECCCChhhHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHH
Confidence 999999999997 49999999999999999975 67899999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccccc
Q 015161 328 ALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 406 (412)
Q Consensus 328 ~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~l 406 (412)
+++++++|+++|+++++|++. +|+|++++++||++++||+.++|++.+..+.++++.++++++||++.+|++||||+++
T Consensus 318 ~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGvel 397 (425)
T 3vcn_A 318 LKKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFGLQEYMRHTPETDAVFPHAYTFSDGMLHPGDKPGLGVDI 397 (425)
T ss_dssp HHHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBCCEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCC
T ss_pred HHHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCceEeecCcchhhhhhcCCCceeeCCEEECCCCCCCCCcC
Confidence 999999999999999999997 7999999999999999999999987655456778888899999999999999999999
Q ss_pred CCCCCC
Q 015161 407 HWDNIA 412 (412)
Q Consensus 407 d~~~~~ 412 (412)
|+++++
T Consensus 398 d~~~l~ 403 (425)
T 3vcn_A 398 DEDLAA 403 (425)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998764
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-69 Score=542.84 Aligned_cols=349 Identities=17% Similarity=0.220 Sum_probs=299.4
Q ss_pred cceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHH------HHHHh
Q 015161 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVK------ASEAC 115 (412)
Q Consensus 42 ~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~------~~~~~ 115 (412)
....|||++|+++.+++|+ +...++.++|||+|++|++||||+.+.+ +.....+.. ++.+.
T Consensus 6 ~~~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~~~~~~~~~~~~~~l~ 72 (394)
T 3mkc_A 6 NPAVAPIKSIEFIPVNYQA---------SNWSQNTVVVKVTDENGVYGLGEADGSP----DAILAYANIETEHKWLTNIT 72 (394)
T ss_dssp CTTCCCEEEEEEEEEEEC-------------CEEEEEEEEEETTSCEEEEEECSCH----HHHHHHHTCCCCBTTBCCTT
T ss_pred CCCCCeEEEEEEEEEecCC---------CCCCccEEEEEEEECCCCeEEEEecCcH----HHHHHHHhcccchhhHHHHH
Confidence 3466999999999999997 2335689999999999999999997532 211111110 11278
Q ss_pred HHHcCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeeceeec--C-CC
Q 015161 116 EVLKESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIP--I-VS 189 (412)
Q Consensus 116 ~~l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~--~-~~ 189 (412)
|.|+|+++.+++.+|+.|++.. .|... ....|+|||||||||++||.+|+|||+||||.. +++|+|.+++ . .+
T Consensus 73 p~liG~dp~~~e~~~~~l~~~~~~~g~~g-~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~ 151 (394)
T 3mkc_A 73 EKAIGRLPIEINAIWDAMYDATQWQGMRG-LGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAIPVD 151 (394)
T ss_dssp TTTTTSCTTCHHHHHHHHHHHTHHHHSST-HHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEECCEEECCCSCC-C
T ss_pred HHhCCCChhHHHHHHHHHHHhhhhcCCch-HHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEecCCcCCCC
Confidence 9999999999999999998642 11111 124689999999999999999999999999974 6899998876 2 23
Q ss_pred --HH----HHHHHHHHHHHcCCCEEeE-ecC---CChhHHHHHHHHHHHh-CCCcEEEEeCCCCC-CHHHHHHHHHHHHc
Q 015161 190 --PA----EAAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAV-HPDSSFILDANEGY-KPQEAVEVLEKLYE 257 (412)
Q Consensus 190 --~~----~~~~~~~~~~~~Gf~~~Ki-KvG---~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~-~~~~A~~~~~~l~~ 257 (412)
++ ++.+++++++++||++||+ |+| .++++|++++++||++ ++++.|++|+|++| +.++|++++++|++
T Consensus 152 ~~~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~ 231 (394)
T 3mkc_A 152 ASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIED 231 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGG
T ss_pred cchhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 44 5677889999999999999 999 6799999999999997 79999999999999 99999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 258 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 258 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
+++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 232 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~ 305 (394)
T 3mkc_A 232 LEL--YFAEATLQHDDLSGHAKLVE----NTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMAT 305 (394)
T ss_dssp GCC--SEEESCSCTTCHHHHHHHHH----HCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHH
T ss_pred cCC--eEEECCCCchhHHHHHHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHH
Confidence 997 49999999999999999975 67899999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCc----ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 337 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPL----LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 337 ~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~----~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++++|++ +|+|+.++++||++++||+.++|++.+. .+.++++.++++++||++.+|++||||+++|++.|
T Consensus 306 ~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 383 (394)
T 3mkc_A 306 ANNVQVMPHNW-KTGITSAAAIHYQFAVGNAPYFEYVHPEFCDGELRKYLVTPEAELVDGGFAKPTAPGLGIDLNQEFL 383 (394)
T ss_dssp HTTCEECCCCC-SCHHHHHHHHHHHHHTCCSSCCEECCGGGCCCHHHHHSEECCCCCBTTBEECCCSSBTCCEECHHHH
T ss_pred HcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEeeccccccchhHHhhccCCCcccCCEEECCCCCCCCceeCHHHH
Confidence 99999999998 9999999999999999999999988763 23456777788999999999999999999999875
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=533.68 Aligned_cols=349 Identities=24% Similarity=0.361 Sum_probs=318.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++|++.||+++.++++.++.++|+|+| +|++||||+.+. +++++|++..+...+++ +.|.++|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRVLGRD 79 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHHTTCB
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999 599999999865 56788888777766765 899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC-CCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~~~ 201 (412)
+.+++.+++.+.. +.|+ + +|++||||||||+.||..|+|||+||||..++++.+++++. .+++++.+.++++.
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~---~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~ 153 (369)
T 2zc8_A 80 LPNPEALREALAP-FRGN--P---MAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHL 153 (369)
T ss_dssp CSSHHHHHHHHTT-SCSC--H---HHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-hcCC--h---HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeceEEecCCCCHHHHHHHHHHHH
Confidence 9999999887743 3442 2 48999999999999999999999999998778888888877 48999999999999
Q ss_pred HcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
++||+++|+|+++ ++|++++++||++.+++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|+
T Consensus 154 ~~G~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 228 (369)
T 2zc8_A 154 EEGYRRIKLKIKP--GWDYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRL--DYIEQPLAYDDLLDHAKLQ 228 (369)
T ss_dssp HTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCC--SCEECCSCTTCSHHHHHHH
T ss_pred HhhhheeeeecCh--hHHHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHH
Confidence 9999999999964 7899999999997789999999999999999 999999999997 4999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+++.++++|+
T Consensus 229 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 304 (369)
T 2zc8_A 229 R----ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHL 304 (369)
T ss_dssp H----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHH
T ss_pred h----hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHH
Confidence 5 57899999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 361 SAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 361 aaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+ +++|+.+ +|++.+. .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 305 a-a~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (369)
T 2zc8_A 305 A-TLPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGVHLKLPFV 356 (369)
T ss_dssp T-TSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred H-cCCCCCcccccCCcchhhhhccccCCcEEECCEEECCCCCcCCcccCHHHH
Confidence 9 9999998 8987652 35678888888999999999999999999999865
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-69 Score=545.79 Aligned_cols=344 Identities=15% Similarity=0.204 Sum_probs=301.3
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.++|++|+.+.+.- ..++.++|||+|++|++||||+.+. ++++.+.. .+++ ++|.|+|+|+
T Consensus 25 ~~~It~v~~~~v~~-------------~~~~~vlV~v~Td~G~~G~GEa~~~--~~~~~~~~---~i~~~lap~LiG~dp 86 (421)
T 4hnl_A 25 PTIITDVKSFAIKP-------------DRHNLVVVKVETNKGISGLGCSTFQ--FRPLAVKT---VVDEYLRPLLMGRDA 86 (421)
T ss_dssp CCBEEEEEEEEECS-------------SSSCEEEEEEEETTSCCEEEECCCT--TSHHHHHH---HHHHTHHHHHTTCBT
T ss_pred CceEEEEEEEEECC-------------CCceEEEEEEEECCCCEEEEeccCC--CCHHHHHH---HHHHHHHHHHCCCCh
Confidence 36799999888741 1246799999999999999998643 34444333 3344 8999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|+.....+.......|+|||||||||++||.+|+|||+||||+. +++|+|.+....+++++.++++++++
T Consensus 87 ~~ie~i~~~~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~ 166 (421)
T 4hnl_A 87 NEIEDIWQVMNVNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKARTAIPAYTHAVADNLDDLYHEIDRFLA 166 (421)
T ss_dssp TCHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCccCcccceecccCCCCHHHHHHHHHHHHH
Confidence 99999999987643222222235789999999999999999999999999974 58999999888899999999999999
Q ss_pred cCCCEEeEecCC------------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 203 QGFTTLKLKVGK------------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 203 ~Gf~~~KiKvG~------------------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
+||+++|+|+|. +++.|+++++++|++ ++++.|++|+|++|++++|++++++|++
T Consensus 167 ~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~ 246 (421)
T 4hnl_A 167 AGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEP 246 (421)
T ss_dssp TTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred hhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhh
Confidence 999999999983 257899999999997 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 258 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 258 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
+++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 247 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~ 320 (421)
T 4hnl_A 247 YQL--FFLEDILPPDQSHWLTQLRS----QSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCD 320 (421)
T ss_dssp GCC--SEEECCSCGGGGGGHHHHHT----TCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHH
T ss_pred hhh--cccccCCcccchHHHHHHHh----cCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHH
Confidence 997 49999999999999999974 78999999999999999999999999999999999997 999999999999
Q ss_pred HcCCcEEEccCcc-hHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 337 ASGLNLMIGGMVE-TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 337 ~~gi~~~~~~~~e-s~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++|+++++|++.+ |++++++++|+++++||+.+.|+.....+.++++.++++++||++.+|++||||+|+|+|+|+
T Consensus 321 ~~gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGveld~~~l~ 397 (421)
T 4hnl_A 321 AMGVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEKSGIGITFDEEAAA 397 (421)
T ss_dssp HTTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHEECCCCCBTTEECCCCSSBSCCEECHHHHT
T ss_pred HCCCeEEEeCCcchhHHHHHHHHHHHHhCCCCccccccCcchhhhhhccCCCeEECCEEECCCCCCCCeeECHHHHh
Confidence 9999999999986 789999999999999999998865433345677778889999999999999999999999764
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-68 Score=530.07 Aligned_cols=348 Identities=24% Similarity=0.371 Sum_probs=317.1
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++|++.||+++.++++.++.++|+|+|++| +||||+.+. +.+++|+++.+...+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 79 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999999999999999 999999865 56788888777776765 889999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC-CCHHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-VSPAEAAELASKYR 201 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-~~~~~~~~~~~~~~ 201 (412)
+.+++.+++.+.. +.++ + +|++||||||||+.||..|+|||+||||..++++++++++. .+++++.+.+++++
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~---~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~ 153 (368)
T 1sjd_A 80 DITAAKVTPLLAK-FKGH--R---MAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYL 153 (368)
T ss_dssp SCCHHHHHHHHTT-SCSC--H---HHHHHHHHHHHHHHHHHTTCBHHHHHTCCCSEEEBEEEECCCSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-hcCC--H---HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCccceEEeeCCCCHHHHHHHHHHHH
Confidence 9999999887743 4442 2 48999999999999999999999999998778888888877 48999999999999
Q ss_pred HcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 202 KQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
++||+++|+|+++ +.|+++|+++|++ ++++.|++|+|++|+.++ +++++.|+++++ .|||||++++|++++++|
T Consensus 154 ~~Gf~~vKik~~~--~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l 228 (368)
T 1sjd_A 154 DEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGL--LLIEQPLEEEDVLGHAEL 228 (368)
T ss_dssp HHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCC--SEEECCSCTTCHHHHHHH
T ss_pred HhCccEEEEecCc--hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCC--CeEeCCCChhhHHHHHHH
Confidence 9999999999974 7899999999997 799999999999999999 999999999997 499999999999999999
Q ss_pred HHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++++++||+++.++++|
T Consensus 229 ~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~h 304 (368)
T 1sjd_A 229 AR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVA 304 (368)
T ss_dssp HT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHH
T ss_pred HH----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCccccHHHHHHHHH
Confidence 74 67899999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 360 LSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 360 laaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+ +++|+.+ +|++.+. .+.+|+ .++++++||++.+|++||||+++|++.+
T Consensus 305 la-a~~~~~~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlGv~~d~~~l 356 (368)
T 1sjd_A 305 LA-SLPNFTLPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLGVAPIPELL 356 (368)
T ss_dssp HH-TSTTBCSCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred HH-cCCCCCcccccCCchhhhhhcC-CCCceEECCEEECCCCCcCCceeCHHHH
Confidence 99 9999998 8987652 356777 7888999999999999999999999865
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-68 Score=531.80 Aligned_cols=350 Identities=24% Similarity=0.305 Sum_probs=315.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcc-cHHHHHHHHH-HHhHHHcCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e-~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+. ++| +. +...++ .+.|.|+|+++
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~-----~~~~~~--~~~~i~~~l~~~l~g~d~ 76 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECT-----VAPDQT--GTAAILYRLAKHLVGHSP 76 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEE-----CTTCHH--HHHHHHHHHHGGGTTSCG
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccC-----CCchHH--HHHHHHHHHHHHHCCCCh
Confidence 8999999999999999999999999999999999999999999999997 234 33 344455 48999999999
Q ss_pred CCHHHHHHH-HHhhc--CCCc--chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHH
Q 015161 124 MALGSVFGV-VAGLL--PGHQ--FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELA 197 (412)
Q Consensus 124 ~~~~~~~~~-l~~~~--~g~~--~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~ 197 (412)
.+++.+|+. |++.. .|.. .. ..+|++|||+||||+.||.+|+|||+||||. ++++|+|++++..+++++.+.+
T Consensus 77 ~~~~~~~~~~l~~~~~~~g~~~~~~-~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a 155 (384)
T 2pgw_A 77 HDVAPLIARIFHQEYLGHGANIMRA-ANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDA 155 (384)
T ss_dssp GGHHHHHHHHHHHHTGGGTCCCHHH-HHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCSSSEEEBCEECCCSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhcccccccc-cHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCCCCceEEEEECCCCCHHHHHHHH
Confidence 999999998 85432 2210 11 2468999999999999999999999999997 6799999998888999999999
Q ss_pred HHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 198 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 198 ~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
++++++||+.+|+|+|.+++.|+++|++||++.+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++
T Consensus 156 ~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~ 233 (384)
T 2pgw_A 156 AVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDI--EFIEQPTVSWSIPAM 233 (384)
T ss_dssp HHHHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHH
T ss_pred HHHHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCC--CEEeCCCChhhHHHH
Confidence 999999999999999988999999999999983399999999999999999999999999997 499999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a 356 (412)
++|++ ++++||++||+++++++++++++.+++|++++|++++| ++++++++++|+++|+++++|+|.||++++++
T Consensus 234 ~~l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa 309 (384)
T 2pgw_A 234 AHVRE----KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCA 309 (384)
T ss_dssp HHHHH----HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCHHHHHH
T ss_pred HHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCHHHHHH
Confidence 99975 57899999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHccCCCCce-ec-ccCCcccccCCCCC-ceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 357 AGHLSAGLGCFKF-ID-LDTPLLLSEDPVLD-GYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 357 ~~hlaaa~~~~~~-~e-~~~p~~~~~d~~~~-~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++++||+.+ +| +++| +.+|++.+ +++++||++.+|++||||+++|++.+
T Consensus 310 ~~hlaaa~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 365 (384)
T 2pgw_A 310 EHHIGLAIPNLDDGNQIMWQL--VQEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLV 365 (384)
T ss_dssp HHHHHHHCSSBCSSBCCCGGG--BSSCSEEESCCCCBTTEEECCCSSBTCCEECHHHH
T ss_pred HHHHHHhCCCcccccccccCc--hhhhhccCCCceEECCEEECCCCCcCCCcCCHHHH
Confidence 9999999999887 66 6566 36788877 88899999999999999999999865
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-68 Score=539.94 Aligned_cols=343 Identities=16% Similarity=0.178 Sum_probs=301.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECC-CcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
|||++|+++.+. | + ..+.++|||+|++ |++||||+.+.. +.++ +...+++ +.|.|+|+++
T Consensus 27 mkIt~v~~~~~~-----~-----~---~~~~v~V~v~Td~~Gi~G~GE~~~~~--~~~~---~~~~i~~~l~p~LiG~dp 88 (440)
T 3t6c_A 27 LFITNVKTILTA-----P-----G---GIDLVVVKIETNEPGLYGLGCATFTQ--RIYA---VQSAIDEYLAPFLIGKDP 88 (440)
T ss_dssp CCEEEEEEEEEC-----T-----T---SSCEEEEEEEESSTTCEEEEECCCGG--GHHH---HHHHHHTTHHHHHTTCCT
T ss_pred CEEEEEEEEEEC-----C-----C---CceEEEEEEEEcCCCCEEEEeeccCC--CHHH---HHHHHHHHHHHHHcCCCh
Confidence 899999998763 1 1 1267999999999 999999986532 2233 2334555 8999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||. +++||+|.+++..+++++.++++++++
T Consensus 89 ~~ie~i~~~~~~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~ 168 (440)
T 3t6c_A 89 ARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKME 168 (440)
T ss_dssp TCHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeeEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999999874322211123469999999999999999999999999997 568999988888899999999999999
Q ss_pred cCCCEEeEecCCC-----------------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCC
Q 015161 203 QGFTTLKLKVGKN-----------------------------------------LKEDIEVLRAIRAV-HPDSSFILDAN 240 (412)
Q Consensus 203 ~Gf~~~KiKvG~~-----------------------------------------~~~D~~~v~avr~~-~~~~~l~vDaN 240 (412)
+||+++|+|+|.. ++.|+++|++||++ ++++.|++|+|
T Consensus 169 ~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~d~~L~vDaN 248 (440)
T 3t6c_A 169 EGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAH 248 (440)
T ss_dssp TTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred cCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 9999999999831 46899999999997 79999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|+
T Consensus 249 ~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 249 ERITPINAIHMAKALEPYQL--FFLEDPVAPENTEWLKMLRQ----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp TCSCHHHHHHHHHHTGGGCC--SEEECSSCGGGGGGHHHHHH----HCCSCEEECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred CCCCHHHHHHHHHHhhhcCC--CEEECCCChhhHHHHHHHHh----hcCCCEEeCcccCCHHHHHHHHHcCCccceeech
Confidence 99999999999999999997 49999999999999999975 6789999999999999999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~ 398 (412)
+++| ++++++++++|+++|+++++|++. +|+|++++++||++++||+.++|+..+....++++.++++++||++.+|+
T Consensus 323 ~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~~~E~~~~~~~~~~~~~~~~~~~~G~i~vp~ 402 (440)
T 3t6c_A 323 SSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVND 402 (440)
T ss_dssp GGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCEEETTEEECCC
T ss_pred hhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCceEeecCcchhhHhhcCCCceecCCEEECCC
Confidence 9998 999999999999999999999986 79999999999999999999999876544456788888999999999999
Q ss_pred CCCcccccCCCCCC
Q 015161 399 ARGHGGFLHWDNIA 412 (412)
Q Consensus 399 ~pGlG~~ld~~~~~ 412 (412)
+||||+++|++.++
T Consensus 403 ~PGLGveld~~~l~ 416 (440)
T 3t6c_A 403 KPGLGIDINEALAA 416 (440)
T ss_dssp CSBTSCCCCHHHHT
T ss_pred CCCCCcccCHHHHH
Confidence 99999999998764
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-68 Score=538.29 Aligned_cols=348 Identities=17% Similarity=0.247 Sum_probs=302.7
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeee-eeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
.|||++|+++++++| ..|+.++.+.... .+.++|||+|++ ++||||+.. .+.+ ...++.+.|.|+|+|+
T Consensus 26 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g-----~~~~---~~~i~~l~p~LiG~d~ 95 (445)
T 3va8_A 26 RSIIKEIVITPVAFH-DMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYG-----DSAH---LDRLQKAADKIKGLSV 95 (445)
T ss_dssp HTBCCEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEEC-----CHHH---HHHHHHHHHHHTTSBT
T ss_pred CCEEEEEEEEEEecC-CcccccccCcccCceeEEEEEEEECC-CEEEEecCC-----cHHH---HHHHHHHHHHHCCCCh
Confidence 389999999999999 8899998876433 567999999999 999999853 2322 2345678999999999
Q ss_pred CCHHHHHHHHHhhcCCCc------c-h------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee----
Q 015161 124 MALGSVFGVVAGLLPGHQ------F-A------SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---- 185 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~------~-~------~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i---- 185 (412)
.+++.+|+.|++.+.++. . + ....|++||||||||++||.+|+|||+||||. +++||+|.++
T Consensus 96 ~~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~y~~ 175 (445)
T 3va8_A 96 YSTNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKW 175 (445)
T ss_dssp TCHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEBCEEEECBC
T ss_pred hHHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeecccc
Confidence 999999999988643221 0 0 23468999999999999999999999999997 5789986543
Q ss_pred ------------cCCCHHHHHHHHHHHHHc-CCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 015161 186 ------------PIVSPAEAAELASKYRKQ-GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 186 ------------~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
+..+++++++++++++++ ||++||+|+|. ++++|+++|++||++.|++.|++|+|++|++++|+++
T Consensus 176 ~~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~ 255 (445)
T 3va8_A 176 GGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWV 255 (445)
T ss_dssp SSSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHH
Confidence 126899999999998875 99999999995 8899999999999988999999999999999999999
Q ss_pred HHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHH
Q 015161 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 330 (412)
Q Consensus 252 ~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~ 330 (412)
+++|+++ + .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++
T Consensus 256 ~~~L~~~-l--~~iEeP~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGitea~k 326 (445)
T 3va8_A 256 AKELEGI-V--EYLEDPAG--EIEGMAAVAK----EASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQT 326 (445)
T ss_dssp HHHTTTT-C--SEEESCBS--HHHHHHHHHT----TCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHH
T ss_pred HHHHhhh-c--CeEeecCc--CHHHHHHHHH----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHHHHHH
Confidence 9999998 7 49999994 7999999874 68999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCcee-cccCCcccc-cCCC-CCceeeeCcEEeeCCCCCcccccC
Q 015161 331 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLS-EDPV-LDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 331 i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~-e~~~p~~~~-~d~~-~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
++++|+++|+++++|++.+++|++++++||++++||+.+. +...|+... +|++ .++++++||++.+|++||||+++|
T Consensus 327 ia~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~~~~d~~~~~~~~~~d~~~~~~~~~~~G~i~vp~~PGLGveld 406 (445)
T 3va8_A 327 LASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELD 406 (445)
T ss_dssp HHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGSCTTCCSBCTTSCCEETTEEECCCSSBTSCCBC
T ss_pred HHHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCceeeeccchhhhcccccccCCCceEECCEEECCCCCcCCCccC
Confidence 9999999999999999999999999999999999998874 444565442 3555 567899999999999999999999
Q ss_pred CCCC
Q 015161 408 WDNI 411 (412)
Q Consensus 408 ~~~~ 411 (412)
+|+|
T Consensus 407 ~~~l 410 (445)
T 3va8_A 407 RERL 410 (445)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-67 Score=521.27 Aligned_cols=347 Identities=20% Similarity=0.256 Sum_probs=311.4
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
.|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.+ +++. .+...++ .+.|.++|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~---~~~~-~~~~~i~~~l~~~l~g~d~ 78 (359)
T 1mdl_A 3 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT---PVAL-KSLKQLLDDMAAMIVNEPL 78 (359)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS---GGGH-HHHHHHHHHHHHHHTTSBS
T ss_pred CCEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC---CchH-HHHHHHHHHHHHHHCCCCc
Confidence 48999999999999999999999999999999999999999999999998753 3443 4444555 48899999999
Q ss_pred CCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+ +.|++...... .....+|++||||||||+.||.+|+|||+||||.++++|+|.+++..+++++.+.++++++
T Consensus 79 ~~~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~a~~~~~ 157 (359)
T 1mdl_A 79 APVSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAE 157 (359)
T ss_dssp CHHHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCCCCeeeeeecCCCCHHHHHHHHHHHHH
Confidence 999998 88866432211 1112468999999999999999999999999998889999988766788999999999999
Q ss_pred cCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 203 QGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 203 ~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
+||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|
T Consensus 158 ~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iE~P~~~~~~~~~~~l 235 (359)
T 1mdl_A 158 LGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI 235 (359)
T ss_dssp TTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCS--CEECCSCTTCHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCC--eEECCCChhhHHHHHHH
Confidence 999999999996 899999999999997 78999999999999999999999999999974 99999999999999999
Q ss_pred HHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
++ ++++||++||+++++++++++++.+++|++++|++++| ++++++++++|+++|+++++|++ ++ +++|
T Consensus 236 ~~----~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~-~~-----a~~~ 305 (359)
T 1mdl_A 236 QS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLF-QE-----ISAH 305 (359)
T ss_dssp HH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBSC-HH-----HHHH
T ss_pred HH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeeccH-HH-----HHHH
Confidence 75 67899999999999999999999999999999999998 99999999999999999999986 33 8999
Q ss_pred HHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 360 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++++++.++|++ | +.+|++.++++++||++.+|++||||+++|++.+
T Consensus 306 laaa~~~~~~~e~~-~--~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l 354 (359)
T 1mdl_A 306 LLAATPTAHWLERL-D--LAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEI 354 (359)
T ss_dssp HHHTCTTBCCEEEC-C--SSTTTBCCCSEEETTEEECCSSSBTCCCBCHHHH
T ss_pred HHHhCCCCcccccC-c--hhhhhccCCceeECCEEECCCCCCCCccCCHHHH
Confidence 99999999999987 5 3678888889999999999999999999999865
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-67 Score=523.37 Aligned_cols=348 Identities=20% Similarity=0.285 Sum_probs=308.0
Q ss_pred eEEeEEEEEEEEeccccceeccCcee-eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
|||++|+++.+++|++.||+++.+++ +.++.++|+|+|++|++||||+.+.+ .+.+ .+...++ .+.|.|+|+++
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~g-~~~~---~~~~~i~~~l~~~l~G~d~ 77 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTVN-HGGA---AVATMVDKDLRGCLLGADA 77 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEES-SSHH---HHHHHHHHTTHHHHTTSCT
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCCC-CchH---HHHHHHHHHHHHHhcCCCc
Confidence 69999999999999999999999988 89999999999999999999998642 1222 3333444 47899999999
Q ss_pred CCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY 200 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~ 200 (412)
.+++.+|+.|+....+.. .....+|++||||||||+.||..|+|||+||||.++++|+|.+.+. .+++++.+.++++
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~y~~~~~~~~~~e~~~~~a~~~ 157 (371)
T 2ovl_A 78 EQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRF 157 (371)
T ss_dssp TCHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEEEEECCBTTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCcCCCHHHHHHHHHHH
Confidence 999999999987544321 1112468999999999999999999999999999889999988654 3889999999999
Q ss_pred HHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHH
Q 015161 201 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
+++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|+++++
T Consensus 158 ~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~ 235 (371)
T 2ovl_A 158 LAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL--HWIEEPTIPDDLVGNA 235 (371)
T ss_dssp HHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHH
T ss_pred HHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHH
Confidence 99999999999996 899999999999997 7999999999999999999999999999997 4999999999999999
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~ 357 (412)
+|++ ++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ ++
T Consensus 236 ~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~~~~------a~ 305 (371)
T 2ovl_A 236 RIVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHGVHD------LT 305 (371)
T ss_dssp HHHH----HHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECSCHH------HH
T ss_pred HHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccccHHH------HH
Confidence 9975 56899999999999999999999999999999999998 9999999999999999999999854 79
Q ss_pred HHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 358 GHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 358 ~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++++++|+.++|++. + +.++++.++++++||++.+|++||||+++|++.+
T Consensus 306 ~hlaaa~~~~~~~e~~~-~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 357 (371)
T 2ovl_A 306 VHALASVPHRTYMEAHG-F-GLHAYMAEPMAVTDGCVSAPDRPGHGVVLDFERL 357 (371)
T ss_dssp HHHHTSCTTEEEEECC-----CGGGBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred HHHHhhCCCCcccccCh-H-HHHHhccCCCeeeCCEEECCCCCCCCCccCHHHH
Confidence 99999999999998763 2 3567777888999999999999999999999865
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-67 Score=531.17 Aligned_cols=361 Identities=22% Similarity=0.283 Sum_probs=308.6
Q ss_pred ccccccccceeeEEeEEEEEEEEeccccceeccCce--eeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH
Q 015161 35 FSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS 112 (412)
Q Consensus 35 ~~~~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~ 112 (412)
.+++++...+.|||++|+++.+++|++.||.++.++ .+.++.++|+|+|++|++||||+.+ + ++.+.+...++
T Consensus 28 ~~~~~~~~~~~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~--g---~~~~~~~~~i~ 102 (428)
T 3bjs_A 28 KRFTQNSRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP--G---RSPGAITSLIH 102 (428)
T ss_dssp -----------CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC--T---TCHHHHHHHHH
T ss_pred cccccCCCCCCCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC--C---CCHHHHHHHHH
Confidence 456665556779999999999999999999999998 8889999999999999999999986 2 34444445556
Q ss_pred H-HhHHHcCCCCCCHHHHHHHHHhhcC---CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeec--
Q 015161 113 E-ACEVLKESPAMALGSVFGVVAGLLP---GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP-- 186 (412)
Q Consensus 113 ~-~~~~l~g~~~~~~~~~~~~l~~~~~---g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~-- 186 (412)
+ +.|.|+|+++.+++.+|+.|++... +.. ....+|++||||||||+.||.+|+|||+||||.++++|+|.+ +
T Consensus 103 ~~l~p~liG~d~~~~~~i~~~l~~~~~~~~~~~-g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~vp~~~s-g~~ 180 (428)
T 3bjs_A 103 NTIAPMLIGMKATDCVGAWQRVHRMQLSSHGLG-AGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAG-GIA 180 (428)
T ss_dssp HTTTTTTTTSBTTCHHHHHHHHHHHTTTTTSCT-HHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCCCEEEEEE-SSC
T ss_pred HHHHHHhCCCCccCHHHHHHHHHHhhhhccCCc-chHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeeeee-ccc
Confidence 4 8899999999999999999965422 211 112368999999999999999999999999998778999976 3
Q ss_pred -CCCH-HHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 187 -IVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 187 -~~~~-~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
..++ +++.+.+++++++||+++|+|+|.+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .
T Consensus 181 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i--~ 258 (428)
T 3bjs_A 181 LGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQA--G 258 (428)
T ss_dssp SCSCCHHHHHHHHHHHHHHTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--S
T ss_pred cCCChHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--C
Confidence 3578 999999999999999999999998899999999999997 8999999999999999999999999999997 4
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCc
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 341 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~ 341 (412)
|||||++++|++++++|++ +++ +||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 259 ~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~ 334 (428)
T 3bjs_A 259 WLEEPFACNDFASYREVAK----ITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIP 334 (428)
T ss_dssp CEECCSCTTCHHHHHHHTT----TCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCccCHHHHHHHHH----hCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCe
Confidence 9999999999999999874 678 99999999999999999999999999999999998 99999999999999999
Q ss_pred EEEccCcchHHHHHHHHHHHccCCCCceeccc----CCcccccCCCCCcee-eeCcEEeeCCCCCcccccCCCCCC
Q 015161 342 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD----TPLLLSEDPVLDGYE-VSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 342 ~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~----~p~~~~~d~~~~~~~-~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+++| +.||++++++++||+++++|+.+.|++ +| +. +++.++++ ++||++.+|++||||+++|++.++
T Consensus 335 ~~~~-~~es~i~~~a~~hlaaa~~~~~~~E~~~~~~~~--~~-~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 406 (428)
T 3bjs_A 335 INAH-SSATGLNHAATIHFLAATENAGYFEACVSKFNP--FR-DMFGTSFEIGADGCVEPPDAPGLGIEVDESIFE 406 (428)
T ss_dssp BCCB-CCSSHHHHHHHHHHHHHCTTBCCEEEECCSSCT--TT-STTTC-CCCCTTSEECCCCSSBTCCCCCGGGTT
T ss_pred EEec-CCCcHHHHHHHHHHHHhCCCccceecccccccc--HH-HhccCCCeeeeCCEEECCCCCCCCCeECHHHHH
Confidence 9999 889999999999999999998776532 44 23 36677888 999999999999999999999874
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-67 Score=529.16 Aligned_cols=336 Identities=17% Similarity=0.233 Sum_probs=291.5
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
+|||++|+++.+ | . +.++|||+|++|++||||+.+.. +.+++. ..++.+.|.|+|+++.
T Consensus 1 mMkIt~i~~~~~--~--~------------~~~~V~v~td~G~~G~GE~~~~g--~~~~~~---~~i~~l~p~liG~dp~ 59 (405)
T 3rr1_A 1 MVKITRLTTYRL--P--P------------RWMFLKVETDEGVTGWGEPVIEG--RARTVE---AAVHELSDYLIGQDPS 59 (405)
T ss_dssp CCCEEEEEEEEE--T--T------------TEEEEEEEETTSCEEEECCCCTT--CHHHHH---HHHHHHGGGTTTSCTT
T ss_pred CCeEEEEEEEEE--C--C------------CEEEEEEEECCCCEEEEeCCCCC--CHHHHH---HHHHHHHHHHCCCCcc
Confidence 489999999887 2 1 23899999999999999998642 233333 3446689999999999
Q ss_pred CHHHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 125 ALGSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 125 ~~~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+++.+|+.|++. ++|. .....|+|||||||||++||.+|+|||+||||. +++||+|.+++..+++++.+++++++
T Consensus 60 ~~e~~~~~l~~~~~~~g~--~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 137 (405)
T 3rr1_A 60 RINDLWQTMYRAGFYRGG--PILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPADVIAGMKALQ 137 (405)
T ss_dssp CHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcccCC--chHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccccCceeeeEeCCCCCHHHHHHHHHHHH
Confidence 999999999874 2332 123468999999999999999999999999997 56899999999899999999999999
Q ss_pred HcCCCEEeEecCC----------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 202 KQGFTTLKLKVGK----------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 202 ~~Gf~~~KiKvG~----------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
++||++||+ +|. ++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++
T Consensus 138 ~~G~~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~ 214 (405)
T 3rr1_A 138 AGGFDHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP--LFIEEPVL 214 (405)
T ss_dssp HTTCCEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC--SCEECSSC
T ss_pred HcCCCEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCC
Confidence 999999999 774 367899999999997 7999999999999999999999999999997 49999999
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcc
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +
T Consensus 215 ~~d~~~~~~l~~----~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~~-~ 289 (405)
T 3rr1_A 215 AEQAETYARLAA----HTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHCP-L 289 (405)
T ss_dssp CSSTHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBCC-S
T ss_pred cccHHHHHHHHh----cCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCCC-C
Confidence 999999999974 68999999999999999999999999999999999998 99999999999999999999987 7
Q ss_pred hHHHHHHHHHHHccCCCCceeccc--CCcccccCCCC-----CceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 350 TRLAMGFAGHLSAGLGCFKFIDLD--TPLLLSEDPVL-----DGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 350 s~i~~~a~~hlaaa~~~~~~~e~~--~p~~~~~d~~~-----~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+|++++++|+++++||+.+.|+. .++.+.++++. ++++++||++.+|++||||+++|++.+
T Consensus 290 s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~~~l 358 (405)
T 3rr1_A 290 GPIALAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPPRLPGLGVDIDEALV 358 (405)
T ss_dssp CHHHHHHHHHHHHHCTTBCCEEECC--------CGGGGBSCGGGGCEETTEECCCCSSBTSCCBCHHHH
T ss_pred cHHHHHHHHHHHHhCCCceeeeeccccccccchhhhhhcccCCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 999999999999999999887743 22223334443 267899999999999999999999865
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-67 Score=526.30 Aligned_cols=345 Identities=18% Similarity=0.211 Sum_probs=302.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~ 122 (412)
..|||++|+++.+++|++.||+++.++++.++.++|+|+|+ |++||||+.+ .++. ...++ .++|.|+|++
T Consensus 4 ~~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~-----~~~~---~~~i~~~l~~~l~g~d 74 (372)
T 3cyj_A 4 SGPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYG-----DVSV---GRFVESKLAGVAEGSD 74 (372)
T ss_dssp --CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEES-----CTHH---HHHHHHHTHHHHTTSB
T ss_pred CCCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccC-----cHHH---HHHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999999999999999 9999999965 2332 22333 4789999999
Q ss_pred CCCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCC--CHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASK 199 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~--~~~~~~~~~~~ 199 (412)
+.+++.+|+.|.+...+.. .....+|++||||||||+.||..|+|||+||||.++++|+|.+++.. +++++.+++++
T Consensus 75 ~~~~~~i~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~~~a~~ 154 (372)
T 3cyj_A 75 ALSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGG 154 (372)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCCSSEEEEEECCCTTSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCCCCceEEEEcCCCCCCHHHHHHHHHH
Confidence 9999999999877543321 11124699999999999999999999999999988899999987765 45778899999
Q ss_pred HHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCceeecCCCCCCHHHH
Q 015161 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~-~l~~~~iEeP~~~~d~~~~ 277 (412)
+.++||+++|+|+|.++++|+++|+++|++ ++++.|++|+|++|++++|++++++|+++ ++. |||||++++|++++
T Consensus 155 ~~~~G~~~~KiKvG~~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i~--~iEqP~~~~d~~~~ 232 (372)
T 3cyj_A 155 WAAAGIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGIS--YLEEPVSSEDREGL 232 (372)
T ss_dssp HHHTTCCEEEEECCSSGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCCC--EEECSSCTTCHHHH
T ss_pred HHHcCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCCc--EEECCCCcccHHHH
Confidence 999999999999999999999999999997 79999999999999999999999999999 974 99999999999999
Q ss_pred HHhHHHhhcccC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 278 GHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 278 ~~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
++|++ +++ +||++||++++..+++++ .+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 233 ~~l~~----~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~------ 300 (372)
T 3cyj_A 233 RLLRD----RGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCAP------ 300 (372)
T ss_dssp HHHHH----HSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSCH------
T ss_pred HHHHH----hCCCCCCEECCCCccCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccchH------
Confidence 99985 455 799999999999999998 789999999999998 999999999999999999999983
Q ss_pred HHHHHHHccCCCCceecccC-CcccccCCCCCceeeeCcEEeeC-CCCCcccccCCCCC
Q 015161 355 GFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFT-NARGHGGFLHWDNI 411 (412)
Q Consensus 355 ~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p-~~pGlG~~ld~~~~ 411 (412)
++++|++++++++.++|+.. +..+.++++.+++.++||++.+| ++||||+++|++.+
T Consensus 301 ~a~lhlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~~PGlGv~~d~~~l 359 (372)
T 3cyj_A 301 AVSAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGSLRPDPDRPGLGLELKRSEA 359 (372)
T ss_dssp HHHHHHGGGCTTEEEEEEEHHHHHHHHHHEECCCCCGGGEECCCTTSCBTCCEECHHHH
T ss_pred HHHHHHHHhCCCCceeeccCCchhhhhHhhcCCCcccCcEEEcCCCCCcccceECHHHH
Confidence 57899999999998888542 22234566777888999999999 99999999999865
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-67 Score=524.51 Aligned_cols=343 Identities=21% Similarity=0.265 Sum_probs=308.2
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.. .++ .+...+++ ++|.|+|+++
T Consensus 3 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~--~~~~~i~~~l~~~l~G~d~ 75 (382)
T 2gdq_A 3 LVKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVD-----WLP--ALHVGFTKRIIPFLLGKQA 75 (382)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECS-----CHH--HHHHHHHHTHHHHHTTSBT
T ss_pred CCEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeecC-----chH--HHHHHHHHHHHHHhcCCCc
Confidence 389999999999999999999999999999999999999999999999972 222 23445565 8999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec--CCCH---HHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP--IVSP---AEAAELA 197 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~--~~~~---~~~~~~~ 197 (412)
.+++.+|+.|.+.. .+|++||||||||+.||.+|+|||+||||. ++++|+|.+++ ..++ +++.+.+
T Consensus 76 ~~~~~~~~~l~~~~--------~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~g~~~~~~~~~e~~~~~a 147 (382)
T 2gdq_A 76 GSRLSLVRTIQKWH--------QRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNV 147 (382)
T ss_dssp TCHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEECCCBCSSTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecccCCCcccHHHHHHHH
Confidence 99999999987532 248999999999999999999999999997 67999997653 3688 9999999
Q ss_pred HHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCceeecCCCCCCH
Q 015161 198 SKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDW 274 (412)
Q Consensus 198 ~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~-~l~~~~iEeP~~~~d~ 274 (412)
++++++||+.+|+|+|. +++.|++++++||++ ++++.|++|+|++|+.++|+++++.|+++ ++ .|||||++++|+
T Consensus 148 ~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~ 225 (382)
T 2gdq_A 148 EAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNI--GWLEEPLPFDQP 225 (382)
T ss_dssp HHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCE--EEEECCSCSSCH
T ss_pred HHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCC--eEEECCCCcccH
Confidence 99999999999999996 899999999999997 79999999999999999999999999999 87 599999999999
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++| +.||+++
T Consensus 226 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~es~i~ 300 (382)
T 2gdq_A 226 QDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAH-AYDGSLS 300 (382)
T ss_dssp HHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECCC-CSSCSHH
T ss_pred HHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHH
Confidence 99999974 67899999999999999999999999999999999998 999999999999999999999 8899999
Q ss_pred HHHHHHHHccCCCCc-e-ecccCCcccccCCCCCcee------eeCcEEeeCCCCCcccccCCCCC
Q 015161 354 MGFAGHLSAGLGCFK-F-IDLDTPLLLSEDPVLDGYE------VSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 354 ~~a~~hlaaa~~~~~-~-~e~~~p~~~~~d~~~~~~~------~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
.++++|++++++|+. + .+.++| +.+|++.++++ ++||++.+|++||||+++|++.+
T Consensus 301 ~~a~l~laa~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 364 (382)
T 2gdq_A 301 RLYALFAQACLPPWSKMKNDHIEP--IEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIV 364 (382)
T ss_dssp HHHHHHHHHTSCCSSSCTTSCSCC--EEEECSSCGGGGGBCCCCBTTEEECCCSSBTSSCBCHHHH
T ss_pred HHHHHHHHHhCchHhhcccccccc--HHHHHhcccccccccccccCCEEECCCCCCCCceeCHHHH
Confidence 999999999999832 1 233345 35788888888 99999999999999999999865
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-68 Score=524.06 Aligned_cols=332 Identities=29% Similarity=0.434 Sum_probs=295.9
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCC-CCCCHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES-PAMALGS 128 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~-~~~~~~~ 128 (412)
+++++++++||+.||+++.++.+.++.++||| |++|++||||+.+.++ ++|+...+...++.+. ++|+ ++.+++.
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v-td~G~~G~GE~~~~~~-~ge~~~~~~~~l~~~~--l~g~~d~~~~e~ 77 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEI-EYEGVTGYGEASMPPY-LGETVESVMNFLKKVN--LEQFSDPFQLED 77 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEEEEECEEEEEE-EETTEEEEEEEECCGG-GSCCHHHHHHHHTTCC--CTTCCCTTCHHH
T ss_pred eEEEEEEEEeccCcEEeeCcEEEEeeEEEEEE-EeCCcEEEEeeeCCCC-CCCCHHHHHHHHHHHH--hcCCCCccCHHH
Confidence 47899999999999999999999999999999 8999999999998764 4566665554444333 7898 9999999
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeec-eeecCCCHHHHHHHHHHHHHcCCCE
Q 015161 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD-ITIPIVSPAEAAELASKYRKQGFTT 207 (412)
Q Consensus 129 ~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~-~~i~~~~~~~~~~~~~~~~~~Gf~~ 207 (412)
+|+.|++...++. .|++||||||||++||..|+|||+||||.+++++.| ++++..+++++.++++++.+ ||++
T Consensus 78 ~~~~l~~~~~~~~-----~A~said~ALwDl~gk~~g~Pl~~LlGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~-g~~~ 151 (338)
T 3ijl_A 78 ILSYVDSLSPKDT-----AAKAAVDIALHDLVGKLLGAPWYKIWGLNKEKTPSTTFTIGIDTPDVVRAKTKECAG-LFNI 151 (338)
T ss_dssp HHHHHHHTCSCCH-----HHHHHHHHHHHHHHHHHHTSBHHHHTTCCGGGCCBBCCBCCCCCHHHHHHHHHHHHT-TCSS
T ss_pred HHHHHHHhccCCH-----HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceEEEEEeCCCHHHHHHHHHHHHh-cccE
Confidence 9999987544332 489999999999999999999999999997788754 57788899999999998876 8999
Q ss_pred EeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 208 ~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~-~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
||+|+|. ++|+++|+++|++.+ ..|++|+|++|+ +++|++++++|+++++ .|||||++++|++++++|++
T Consensus 152 ~K~Kvg~--~~d~~~v~avR~~~~-~~l~vDaN~~~t~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~---- 222 (338)
T 3ijl_A 152 LKVKLGR--DNDKEMIETIRSVTD-LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWVTQ---- 222 (338)
T ss_dssp EEEECSS--SCHHHHHHHHHTTCC-CCEEEECTTCCCCHHHHHHHHHHHHHTTE--EEEECCSCTTCHHHHHHHHH----
T ss_pred EEEecCc--HHHHHHHHHHHhhcC-CcEEEECcCCCCCHHHHHHHHHHHhhCCC--CEEECCCCCCcHHHHHHHHh----
Confidence 9999997 579999999999864 699999999995 9999999999999987 59999999999999999975
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++||++||++++..++++++ +++|++|+|++++| ++++++++++|+++|+++++|||.||++++++++|+++.++
T Consensus 223 ~~~ipIa~dE~~~~~~~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~~ 300 (338)
T 3ijl_A 223 QSPLPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAVD 300 (338)
T ss_dssp TCSSCEEESTTCCSGGGTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHTTGGGCS
T ss_pred cCCCCEEECCCCCCHHHHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHhccCC
Confidence 6899999999999999998886 78999999999998 99999999999999999999999999999999999998654
Q ss_pred CCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccccc
Q 015161 366 CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 406 (412)
Q Consensus 366 ~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~l 406 (412)
++++++++.+.+|++.+ ++++||++.+|++||||+++
T Consensus 301 ---~~~l~~~~~~~~d~~~~-~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 301 ---FADLDGNLLISNDRFKG-VEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp ---EECCCGGGGBSCCCCBC-CEEETTEEECCSCSBTCCBC
T ss_pred ---cccccchhhhhhcccCC-ceeECCEEECCCCCccceee
Confidence 66888888778888875 88999999999999999986
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-67 Score=529.17 Aligned_cols=340 Identities=18% Similarity=0.226 Sum_probs=295.1
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
|.|||++|+++.+..+ .++.++|||+|++|++||||+.+. ++.+.+.. .++.+.|.|+|+++
T Consensus 1 ~~MkI~~i~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~~~---~i~~l~p~liG~d~ 62 (409)
T 3go2_A 1 MSLKVVSVDTLCCDAG-------------WRNYHFVKLTTDEGIVGWSEFDEG--FGSPGVTA---VIEQLGKRLVGASV 62 (409)
T ss_dssp -CCBEEEEEEEEEECS-------------SSEEEEEEEEETTCCEEEEEECST--TTCTTHHH---HHHHHHHHHTTSBT
T ss_pred CCCEEEEEEEEEECCC-------------CccEEEEEEEECCCCEEEEeecCC--CCcHHHHH---HHHHHHHHhcCCCh
Confidence 5799999999987631 246899999999999999998753 34455433 34568999999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceee--------------cCC
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI--------------PIV 188 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i--------------~~~ 188 (412)
.+++.+|+.|++...+........|+|||||||||++||.+|+|||+||||. +++||+|++. +..
T Consensus 63 ~~~e~~~~~~~~~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~i~~~~~~~~~~~ 142 (409)
T 3go2_A 63 MEHERFFAEAYCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINHPKFFGPPVT 142 (409)
T ss_dssp TCHHHHHHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSEEEEEECSTTHHHHHCTTTSSSCCC
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeEEEEEeecCccccccccccccCCC
Confidence 9999999999875432222223469999999999999999999999999997 6799999653 346
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEec-------------CCC-------------hhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKV-------------GKN-------------LKEDIEVLRAIRAV-HPDSSFILDANE 241 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKv-------------G~~-------------~~~D~~~v~avr~~-~~~~~l~vDaN~ 241 (412)
+++++.+.+++++++||++||+|+ |.+ ++.|++++++||++ ++++.|++|+|+
T Consensus 143 ~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~ 222 (409)
T 3go2_A 143 DLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNF 222 (409)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 899999999999999999999999 421 45789999999997 899999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+|+.++|++++++|+++++ .|||||+ +|++++++|++ ++++||++||+++++.+++++++.+++|++|+|++
T Consensus 223 ~~~~~~A~~~~~~L~~~~i--~~iE~P~--~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 294 (409)
T 3go2_A 223 NAKPEGYLKILRELADFDL--FWVEIDS--YSPQGLAYVRN----HSPHPISSCETLFGIREFKPFFDANAVDVAIVDTI 294 (409)
T ss_dssp CSCHHHHHHHHHHTTTSCC--SEEECCC--SCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHH
T ss_pred CCCHHHHHHHHHHHhhcCC--eEEEeCc--CCHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 9999999999999999997 4999997 48999999975 68899999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC-CcccccCCCCCceeeeCcEEeeCCC
Q 015161 322 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNA 399 (412)
Q Consensus 322 ~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~ 399 (412)
+ | ++++++++++|+++|+++++|+ ++|+|+.++++||++++||+.++|++. +..+.+|++.++++++||++.+|++
T Consensus 295 ~-GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~~~E~~~~~~~~~~d~~~~~~~~~~G~i~~p~~ 372 (409)
T 3go2_A 295 W-NGVWQSMKIAAFADAHDINVAPHN-FYGHLCTMINANFAAAVPNLRIMETDIDRLAWEDELFTHAPEYQNGELIIPDR 372 (409)
T ss_dssp H-HCHHHHHHHHHHHHHTTCEEEECC-CSCHHHHHHHHHHHHHCSSBCCEEECCCCCTTHHHHBSCCCCEETTEEECCCS
T ss_pred C-CCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHcCCCCeEEEeeCCcchhhhhhccCCCeeECCEEECCCC
Confidence 9 8 9999999999999999999986 699999999999999999999988753 2334577888889999999999999
Q ss_pred CCcccccCCCCC
Q 015161 400 RGHGGFLHWDNI 411 (412)
Q Consensus 400 pGlG~~ld~~~~ 411 (412)
||||+++|++.+
T Consensus 373 PGlGveld~~~l 384 (409)
T 3go2_A 373 PGWGTDPVEEAI 384 (409)
T ss_dssp SBSSCCBCHHHH
T ss_pred CCCCcccCHHHH
Confidence 999999999865
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-66 Score=522.13 Aligned_cols=356 Identities=15% Similarity=0.197 Sum_probs=309.6
Q ss_pred ccccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHH
Q 015161 39 NLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118 (412)
Q Consensus 39 ~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l 118 (412)
|+..+|.|||++|+++.+. |+..|+.++. .++.++|+|+|++|++||||+.+.+ +..+++. ..++++.|.|
T Consensus 4 ~~~~~~~MkI~~i~~~~~~-p~~~~~~~~~----~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~~~---~~i~~l~p~l 74 (391)
T 2qgy_A 4 NNQDISIGKLSRLKIWITD-NHLSDDQWSN----TKKFIIIKITTEDGIEGWGEAFSIN-FREKGIA---IIIKELFREI 74 (391)
T ss_dssp -CTTCCCCCEEEEEEEEEC-CCBCGGGCSB----CCCCEEEEEEETTCCEEEEEECCCT-TTHHHHH---HHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEec-CccccccccC----CCcEEEEEEEECCCCEEEecccCCC-CChHHHH---HHHHHHHHHh
Confidence 4455677999999999995 7766665543 3567999999999999999998765 3344433 3445689999
Q ss_pred cCCCCCCHHHHHHHHHh-hcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeece--eec-CCCHHHH
Q 015161 119 KESPAMALGSVFGVVAG-LLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDI--TIP-IVSPAEA 193 (412)
Q Consensus 119 ~g~~~~~~~~~~~~l~~-~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~--~i~-~~~~~~~ 193 (412)
+|+++.+++.+|+.|.. ......... .+|++||||||||+.||..|+|||+||||. ++++|+|. +++ ..+++++
T Consensus 75 ~G~d~~~~~~i~~~l~~~~~~~~g~~~-~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~g~~~~~~~~~~~ 153 (391)
T 2qgy_A 75 SNIPNLSIKSFYNKISLLSDGHRGLDF-SSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKKDTNDY 153 (391)
T ss_dssp TTCTTCCHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHHHHHHHTSBHHHHHCSSCCSEEEEEEECCCSSCCCHHHH
T ss_pred cCCChhHHHHHHHHHHhhhhhccCchH-HHHHHHHHHHHHHHHHHHhCCcHHHHcCCCcCCCcceEEecccCCCCCHHHH
Confidence 99999999999999876 322111111 369999999999999999999999999996 56899987 444 5689999
Q ss_pred HHHHHHHHHcCCCEEeEecCCC-hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~-~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~ 271 (412)
.+.+++++++||+.+|+|+|.+ ++.|+++|++||++ ++++.|++|+|++|++++|+++++.|+++++. |||||+++
T Consensus 154 ~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~~ 231 (391)
T 2qgy_A 154 LRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPY--WIEEPVDG 231 (391)
T ss_dssp HHHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCS--EEECSSCT
T ss_pred HHHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCC--eEeCCCCh
Confidence 9999999999999999999977 79999999999996 89999999999999999999999999999974 99999999
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+|++++++|++ ++++||++||+++++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|++ ++
T Consensus 232 ~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~~ 306 (391)
T 2qgy_A 232 ENISLLTEIKN----TFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW-NS 306 (391)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC-SC
T ss_pred hhHHHHHHHHh----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC-CC
Confidence 99999999975 57899999999999999999999999999999999998 99999999999999999999999 88
Q ss_pred -HHHHHHHHHHHccCCCCceecccC-CcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 351 -RLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 351 -~i~~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|++++++|+++++||+.++|++. +..+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 307 ~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 369 (391)
T 2qgy_A 307 MSVSASAMLHVCSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDIL 369 (391)
T ss_dssp TTHHHHHHHHHHHHCTTBCCEEECGGGHHHHHTTBCCSEEEETTEEEECCSSBTCCCBCHHHH
T ss_pred cHHHHHHHHHHHHhCCCCceEeecCccchhhHHHhcCCceeeCCEEECCCCCcCCccCCHHHH
Confidence 999999999999999999999764 2233478888889999999999999999999999865
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-67 Score=526.49 Aligned_cols=335 Identities=21% Similarity=0.242 Sum_probs=289.6
Q ss_pred eeeEEeEEEEEEEEeccccceecc--Ccee-eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIA--TSRL-DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a--~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
..|||++|+++++++|++.||.++ .|.. ..++.++|+|+|+ |++||||+.+.. +++.|.|+|
T Consensus 10 ~~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~~--------------~~l~~~liG 74 (392)
T 3v5c_A 10 SDWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHMT--------------PEWAEDVIG 74 (392)
T ss_dssp TTCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSCC--------------HHHHHTTTT
T ss_pred cCcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCcH--------------HHHHHHhCC
Confidence 358999999999999999999964 7776 5689999999999 999999998631 346899999
Q ss_pred CCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC-e-----eeecee-ecCC-----
Q 015161 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-T-----ITTDIT-IPIV----- 188 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~-~-----i~~~~~-i~~~----- 188 (412)
+++.++.. ..+.. ...|++||||||||++||.+|+|||+||||+.+ + +|+|.+ ++..
T Consensus 75 ~d~~~~~~--------~~~~~---~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~r~~~~~v~v~~y~~~~~~~~~~~~ 143 (392)
T 3v5c_A 75 RRLLDLFD--------DRGRL---REAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLA 143 (392)
T ss_dssp CBGGGGBC--------TTSCB---CGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCCSCCCCCEEEEEEEEEECBTTTTCC
T ss_pred CCHHHHHh--------hccch---HHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCcccccceEEEEEeeccccccccc
Confidence 99875421 11221 124899999999999999999999999999865 4 888864 3322
Q ss_pred ----CHHHHHHHHHHHHHcCCCEEeEecCCC---------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 189 ----SPAEAAELASKYRKQGFTTLKLKVGKN---------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 189 ----~~~~~~~~~~~~~~~Gf~~~KiKvG~~---------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+++++.+++++++++||++||+|+|.+ +++|+++|++||++ +|++.|++|+|++|++++|++++++
T Consensus 144 ~~~~~~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~ 223 (392)
T 3v5c_A 144 DERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAA 223 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHh
Confidence 246778888899999999999999963 68999999999996 9999999999999999999999999
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~ 333 (412)
|+++++ .|||||++ +|++++++|++.++. .+.+|||+||+++ ..+++++++.+++|++|+|+++.|+++++++++
T Consensus 224 L~~~~l--~~iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~GGitea~kia~ 299 (392)
T 3v5c_A 224 LSDVNL--YWLEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIWPGFTHWMELGE 299 (392)
T ss_dssp TTTSCC--CEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHH
T ss_pred cccCCC--eEEeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 999987 49999998 689999999853211 2689999999999 899999999999999999999944999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++|+++++||+ +++|++++++||++++||+.++|++.++ ..++..++++++||++.+|++||||+|+|+|.+
T Consensus 300 ~A~~~gv~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~--~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l 374 (392)
T 3v5c_A 300 KLDAHGLRSAPHCY-GNAYGIYASGHLSAAVRNFEFVEYDDIT--IEGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp HHHHTTCEECCBCC-SCTHHHHHHHHHGGGCTTBCCEEECCEE--ETTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred HHHHcCCeEEecCC-CcHHHHHHHHHHHHhCCCCceEecccch--hhhccCCCCeeECCEEECCCCCCCCccCCHHHH
Confidence 99999999999998 8999999999999999999999988654 245556788999999999999999999999875
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-67 Score=525.05 Aligned_cols=351 Identities=16% Similarity=0.197 Sum_probs=311.7
Q ss_pred eeeEEeEEEEEEEEecccc--------------------ceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCccc
Q 015161 44 FTVDVQRAENRPLNVPLIA--------------------PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAED 103 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~--------------------pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~ 103 (412)
|+|||++|+++++++|++. ||+++.++++.+ .++|+|+|++|++||||+.+.. +++
T Consensus 1 m~mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~~~V~v~td~G~~G~GE~~~~~---~~~ 76 (388)
T 2nql_A 1 MNSPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDR-SVLVRMTTEAGTVGWGETYGIV---APG 76 (388)
T ss_dssp CCCCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEE-EEEEEEEETTCCEEEEEEECSS---CHH
T ss_pred CCceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccce-EEEEEEEECCCCEEEEEecCCC---CcH
Confidence 4599999999999999999 999998888888 9999999999999999998752 343
Q ss_pred HHHHHHHHHH-HhHHHcCCCCCCHHHHHHHHHh--h-cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCee
Q 015161 104 QQTAMVKASE-ACEVLKESPAMALGSVFGVVAG--L-LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI 179 (412)
Q Consensus 104 ~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~--~-~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i 179 (412)
.+...+++ ++|.|+|+++.+++.+|+.|++ . ..+.. ....+|++||||||||+.||..|+|||+||||.++++
T Consensus 77 --~~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~-~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~v 153 (388)
T 2nql_A 77 --AVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTG-GFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSF 153 (388)
T ss_dssp --HHHHHHHHTHHHHHTTCCSSSHHHHHHHHHHHHGGGTCSS-HHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCSEE
T ss_pred --HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhcccccCCc-hHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCce
Confidence 33445564 8999999999999999999844 2 22211 1123689999999999999999999999999987799
Q ss_pred eeceeec-CCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 180 TTDITIP-IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 180 ~~~~~i~-~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
|+|.+++ ..+++++.+.+++++++||+.+|+|+|. +++. +++|++||++ ++++.|++|+|++|+.++|+++++.|+
T Consensus 154 p~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~ 232 (388)
T 2nql_A 154 PAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQ 232 (388)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHG
T ss_pred EeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999876 4689999999999999999999999995 7888 9999999996 899999999999999999999999999
Q ss_pred cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHH
Q 015161 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 257 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A 335 (412)
++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++++|+++ | ++++++++++|
T Consensus 233 ~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A 305 (388)
T 2nql_A 233 PFDP--WFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALA 305 (388)
T ss_dssp GGCC--SCEECCSCTTCHHHHHHHHT----SCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHH
T ss_pred hcCC--CEEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHH
Confidence 9997 49999999999999999974 678999999999999999999999999999999999 9 99999999999
Q ss_pred HHcCCcEEEccCcchHHHHHHHHHHHccCCCC--cee-cccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 336 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCF--KFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 336 ~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~--~~~-e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|+++++|++.||+|+.++++|+++++||+ ++. ++++| +.+|++.++++++||++.+|++||||+++|++.+
T Consensus 306 ~~~g~~~~~h~~~es~i~~aa~~hlaa~~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 382 (388)
T 2nql_A 306 AEHGIDVIPHATVGAGIFLAASLQASSTLSMLKGHEFQHSIFE--PNRRLLDGDMDCREGRYHLPSGPGLGVRPSEAAL 382 (388)
T ss_dssp HHHTCEECCCCCSSCSHHHHHHHHHHTTCTTBCCEEECHHHHT--GGGGGEESCCEEETTEEECCCSSBTSCEECHHHH
T ss_pred HHcCCeEEeecCCCcHHHHHHHHHHHHhCCchhhhccccccch--HHHHhccCCCcccCCEEECCCCCCCCceECHHHH
Confidence 99999999999999999999999999999996 232 33455 3678887889999999999999999999999865
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-67 Score=527.02 Aligned_cols=339 Identities=18% Similarity=0.179 Sum_probs=284.9
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++.+. | .++.++|||+|++|++||||+. +++++...++ .+.+.|.|+|+++.+
T Consensus 1 MkIt~ie~~~~~-----~---------~~~~~~V~v~td~G~~G~GE~~----~~~~~~~~~i--~~~l~p~liG~dp~~ 60 (400)
T 4dxk_A 1 MKITKLETVRVA-----E---------RTNLLWVLVHTDEGITGLGETF----FGAETVETYV--HEYIAPRVIGRDPLQ 60 (400)
T ss_dssp CCEEEEEEEEET-----T---------STTEEEEEEEETTSCCEEEEEE----SCHHHHHHHH--HHTHHHHHTTSCTTC
T ss_pred CeEEEEEEEEEC-----C---------CCCEEEEEEEECCCCEEEEcCC----CCccHHHHHH--HHHHHHHhCCCCcch
Confidence 899999998764 1 2468999999999999999953 2344444322 245899999999999
Q ss_pred HHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecC----------------
Q 015161 126 LGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI---------------- 187 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~---------------- 187 (412)
++.+|+.| ..+.++. .+....|+|||||||||++||.+|+|||+||||. +++||+|.++..
T Consensus 61 ~~~~~~~~-~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~~~~~ 139 (400)
T 4dxk_A 61 IDLLAQDL-VGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYG 139 (400)
T ss_dssp HHHHHHHH-CCSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSCEEEEBC-------------------
T ss_pred HHHHHHHH-HHHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCccCceeEEEeccccccccccccccccccc
Confidence 99999999 4443321 1223469999999999999999999999999997 579999976431
Q ss_pred ---CCHHH--------HHHHHHHHHHcCCCEEeEecCC--------------ChhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 015161 188 ---VSPAE--------AAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV-HPDSSFILDANE 241 (412)
Q Consensus 188 ---~~~~~--------~~~~~~~~~~~Gf~~~KiKvG~--------------~~~~D~~~v~avr~~-~~~~~l~vDaN~ 241 (412)
.++++ ..+.+++++++||++||+|+|. +++.|++++++||++ ++++.|++|+|+
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~ 219 (400)
T 4dxk_A 140 LSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHS 219 (400)
T ss_dssp ---------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred ccccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 2456678889999999999971 367899999999997 789999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+|+.++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++
T Consensus 220 ~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~ 293 (400)
T 4dxk_A 220 MWQLLPAMQIAKALTPYQT--FWHEDPIKMDSLSSLTRYAA----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDIS 293 (400)
T ss_dssp CBCHHHHHHHHHHTGGGCC--SEEECCBCTTSGGGHHHHHH----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTT
T ss_pred CCCHHHHHHHHHHHhhcCC--CEEEcCCCcccHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 9999999999999999997 49999999999999999975 67999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecc-cC-CcccccCCCCCceeeeCcEEeeCC
Q 015161 322 KVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-DT-PLLLSEDPVLDGYEVSGAVYKFTN 398 (412)
Q Consensus 322 ~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~-~~-p~~~~~d~~~~~~~~~~G~~~~p~ 398 (412)
++| ++++++++++|+++|+++++|++. ++|++++++||++++||+.++|. .. ...+.+|++.++++++||++.+|+
T Consensus 294 ~~GGit~~~kia~~A~~~gi~~~~h~~~-s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~ 372 (400)
T 4dxk_A 294 WCGGLSEARKIASMAEAWHLPVAPHXCT-GPVVLCASTHLSLNAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPP 372 (400)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCEEEC-CC-CHHHHHHHHHHHHHCTTBCCEECCTTC-CCTHHHHBSCCCEEETTEEECCS
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEecCCC-ChHHHHHHHHHHHhCCCceeEEecccccchhhHhhcCCCCeeeCCEEECCC
Confidence 998 999999999999999999999974 99999999999999999998884 31 112346778888999999999999
Q ss_pred CCCcccccCCCCCC
Q 015161 399 ARGHGGFLHWDNIA 412 (412)
Q Consensus 399 ~pGlG~~ld~~~~~ 412 (412)
+||||+++|++.++
T Consensus 373 ~PGlGveld~~~l~ 386 (400)
T 4dxk_A 373 GAGLGMELHPDIEK 386 (400)
T ss_dssp SSBTSCCBCTTGGG
T ss_pred CCCCCCcCCHHHHh
Confidence 99999999999864
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-66 Score=527.07 Aligned_cols=343 Identities=18% Similarity=0.210 Sum_probs=292.7
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.|||++|+++.+. | .++.++|||+|++|++||||+... +++. .+...+++ +.|.|+|+++
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~----g~~~-~~~~~l~~~l~p~LiG~dp 82 (426)
T 4e4f_A 22 SMKIVSAEVFVTC-----P---------GRNFVTLKITTDSGLTGLGDATLN----GREL-PVASYLNDHVCPQLIGRDA 82 (426)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCT----TCHH-HHHHHHHHTHHHHHTTSBT
T ss_pred CcEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEecccC----CCcH-HHHHHHHHHHHHHHcCCCh
Confidence 5999999987652 1 247899999999999999998643 2222 22234444 7899999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|++.......+....|+|||||||||++||.+|+|||+||||.. +++|+|.+....+++++.++++++++
T Consensus 83 ~~ie~i~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~~~~~~~~~~ 162 (426)
T 4e4f_A 83 HQIEDIWQYFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRD 162 (426)
T ss_dssp TCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeEeEeCCCCCHHHHHHHHHHHHH
Confidence 99999999998743211111234699999999999999999999999999974 58999988777789999999999999
Q ss_pred cCCCEEeEecCCC-----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHH
Q 015161 203 QGFTTLKLKVGKN-----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQ 246 (412)
Q Consensus 203 ~Gf~~~KiKvG~~-----------------------------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~ 246 (412)
+||+++|+|+|.+ ++.+++++++||++ ++++.|++|+|++|+++
T Consensus 163 ~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~a~G~d~~L~vDaN~~~~~~ 242 (426)
T 4e4f_A 163 QGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPI 242 (426)
T ss_dssp TTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHH
T ss_pred cCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHH
Confidence 9999999999832 12357899999997 89999999999999999
Q ss_pred HHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-H
Q 015161 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V 325 (412)
Q Consensus 247 ~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-i 325 (412)
+|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +
T Consensus 243 ~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGi 316 (426)
T 4e4f_A 243 EAARFGKSVEDYRL--FWMEDPTPAENQACFRLIRQ----HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGI 316 (426)
T ss_dssp HHHHHHHHTGGGCC--SEEECCSCCSSGGGGHHHHT----TCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHH
T ss_pred HHHHHHHHHhhcCC--CEEECCCChHHHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCH
Confidence 99999999999997 49999999999999999874 68999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHcCCcEEEcc-CcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccc
Q 015161 326 LGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 404 (412)
Q Consensus 326 t~~l~i~~~A~~~gi~~~~~~-~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~ 404 (412)
+++++++++|+++|+++++|+ +.+|++++++++|+++++||+.++|++++.....+++.++++++||++.+|++||||+
T Consensus 317 t~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGv 396 (426)
T 4e4f_A 317 TGMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHSWTFDNGYMHPGEKPGLGI 396 (426)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCCCCEEETTEEECCSSSBTCC
T ss_pred HHHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCceeEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCc
Confidence 999999999999999999987 4689999999999999999999999876422222455678899999999999999999
Q ss_pred ccCCCCCC
Q 015161 405 FLHWDNIA 412 (412)
Q Consensus 405 ~ld~~~~~ 412 (412)
++|++.++
T Consensus 397 e~de~~~~ 404 (426)
T 4e4f_A 397 EFDEKLAA 404 (426)
T ss_dssp CCCHHHHT
T ss_pred ccCHHHHH
Confidence 99998764
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-66 Score=533.05 Aligned_cols=351 Identities=19% Similarity=0.228 Sum_probs=300.8
Q ss_pred ceeeEEeEEEEEEEEeccccceeccCce-eeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCC
Q 015161 43 TFTVDVQRAENRPLNVPLIAPFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (412)
Q Consensus 43 ~~~mkI~~i~~~~~~~pl~~pf~~a~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (412)
+++|||++|+++++..| ..+..++.+. ....+.++|+|+|++|++||||+.. ++.+. ..++.++|.|+|+
T Consensus 5 ~~~~~It~i~~~~v~~~-d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~ 75 (470)
T 3p0w_A 5 THTPRVTEMQVIPVAGR-DSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG-----GEGIR---QALERVIPLVVGQ 75 (470)
T ss_dssp -CCCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTGGGTTTC
T ss_pred CCCCeEEEEEEEEecCC-CcccccccccCCCcceEEEEEEEECCCCEEEEeCCC-----hHHHH---HHHHHHHHHhCCC
Confidence 35689999999999998 6667666655 3346789999999999999999852 23332 3346689999999
Q ss_pred CCCCHHHHHHHHHhhcCCCc--c-------------h-----------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-C
Q 015161 122 PAMALGSVFGVVAGLLPGHQ--F-------------A-----------SQLKVRAAVEMALIDAVAKSVSMPLWRLFG-G 174 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~--~-------------~-----------~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-g 174 (412)
|+.+++.+|+.|++.+.+.. . + ....|+||||+||||++||.+|+|||+||| |
T Consensus 76 d~~~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG 155 (470)
T 3p0w_A 76 SIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155 (470)
T ss_dssp BGGGHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTS
T ss_pred ChhhHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCC
Confidence 99999999999988653210 0 0 012689999999999999999999999999 6
Q ss_pred C-CCeeeeceee-----------------------------cCCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHH
Q 015161 175 V-SNTITTDITI-----------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEV 222 (412)
Q Consensus 175 ~-~~~i~~~~~i-----------------------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~ 222 (412)
+ +++||+|.+. +..++++++++++++++ +||++||+|+|. ++++|+++
T Consensus 156 ~~r~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~r 235 (470)
T 3p0w_A 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEA 235 (470)
T ss_dssp CCCSEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 5 5689987643 13578999999999888 699999999995 88999999
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCC
Q 015161 223 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESC 298 (412)
Q Consensus 223 v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~ 298 (412)
|++||+++|++.|++|+|++|++++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||++
T Consensus 236 v~avRea~pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~ 308 (470)
T 3p0w_A 236 IAAIKARFPHARVTLDPNGAWSLNEAIALCKGQGHL-V--AYAEDPCGPEAGYSGREVMAEFKR----ATGIPTATNMIA 308 (470)
T ss_dssp HHHHHHHCTTSEEEEECTTBBCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSS
T ss_pred HHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHhcccc-c--eeecCCCChhhccchHHHHHHHHh----cCCCCEEeCCcc
Confidence 999999999999999999999999999999999998 6 49999999998 789999875 578999999999
Q ss_pred CCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcc
Q 015161 299 RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLL 377 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~ 377 (412)
++..+++++++.+++|++|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||+ +.+++.++.
T Consensus 309 ~~~~~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~-~~~~d~~~~ 386 (470)
T 3p0w_A 309 TDWRQMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN-ITAIDTHWI 386 (470)
T ss_dssp CSHHHHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHH
T ss_pred CCHHHHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-ceeeccccc
Confidence 9999999999999999999999 676 9999999999999999999999999999999999999999987 445554432
Q ss_pred c---ccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 378 L---SEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 378 ~---~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+ .++++.++++++||++.+|++||||+|+|+++|
T Consensus 387 ~~~~~~~l~~~p~~~~dG~i~vP~~PGLGveld~~~l 423 (470)
T 3p0w_A 387 WQEAQERLTREPLRIQGGHVAVPERPGLGIEIDMDRV 423 (470)
T ss_dssp HHTTTCCCBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred cccchhhhcCCCceeECCEEECCCCCCcCceeCHHHH
Confidence 2 257778889999999999999999999999875
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-66 Score=524.30 Aligned_cols=349 Identities=17% Similarity=0.198 Sum_probs=299.4
Q ss_pred eeeEEeEEEEEEEEeccc----------------cceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHH
Q 015161 44 FTVDVQRAENRPLNVPLI----------------APFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~----------------~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~ 107 (412)
.+|||++|+.+.+..+-. ..+..+.++++.++.++|||+|++|++||||+.+.+ . .+
T Consensus 21 ~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~----~---~~ 93 (412)
T 3stp_A 21 QSMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALAP----S---VV 93 (412)
T ss_dssp --CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSSH----H---HH
T ss_pred eccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCCH----H---HH
Confidence 579999999999875211 123466778888899999999999999999986532 2 22
Q ss_pred HHHHHH-HhHHHcCCCCCCHHHHHHHHHhhcC--CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeece
Q 015161 108 MVKASE-ACEVLKESPAMALGSVFGVVAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDI 183 (412)
Q Consensus 108 ~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~--g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~ 183 (412)
...+++ +.|.|+|+++.+++.+|+.|++... |.. .....|+|||||||||++||.+|+|||+||||. +++||+|.
T Consensus 94 ~~~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~-g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~ 172 (412)
T 3stp_A 94 KKVIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRK-GIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYY 172 (412)
T ss_dssp HHHHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSS-THHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCCCceEEEEE
Confidence 334555 7899999999999999999986432 111 113469999999999999999999999999997 67999998
Q ss_pred ee-cCCCHHHHHHHHHHHHHcCCCEEeEecCCC-------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 184 TI-PIVSPAEAAELASKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 184 ~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+. ...+++++.+.+++++++||++||+|+|.+ ++.|+++|++||++ ++++.|++|+|++|++++|++++++
T Consensus 173 s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~ 252 (412)
T 3stp_A 173 SKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPK 252 (412)
T ss_dssp ECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 84 567899999999999999999999999853 57999999999997 7999999999999999999999999
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++++
T Consensus 253 Le~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~ 326 (412)
T 3stp_A 253 LAPYEP--RWLEEPVIADDVAGYAELNA----MNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAAQKINA 326 (412)
T ss_dssp HGGGCC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHH
T ss_pred HHhcCC--CEEECCCCcccHHHHHHHHh----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHH
Confidence 999997 49999999999999999975 68999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc------CCcccccCCCCCceeeeCcEEeeCCC-CCccccc
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD------TPLLLSEDPVLDGYEVSGAVYKFTNA-RGHGGFL 406 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~------~p~~~~~d~~~~~~~~~~G~~~~p~~-pGlG~~l 406 (412)
+|+++|+++++|| +.++++||+++.+|+.++|+. ....+.++++.++++++||++.+|++ ||||+++
T Consensus 327 ~A~a~gi~v~~h~------~~aa~~hlaaA~~~~~~~e~~~~~d~~~~~~l~~~~~~~~~~~~~G~i~vp~~~PGlGvel 400 (412)
T 3stp_A 327 IAEAAQIPVIPHA------GQMHNYHLTMANTNCPISEYFPVFDVEVGNELFYYIFEGDPEAVDGYLQLDDDLPGLGIAI 400 (412)
T ss_dssp HHHHHTCCBCCSS------CSHHHHHHHHTCTTCCCEEECCCCSSSSSTTTHHHHEECCCCCBTTEECCCSSSCBTSCEE
T ss_pred HHHHcCCEEEecc------HHHHHHHHHHhCCCCceEEecccccccccchhhhhhccCCCcccCCEEEcCCCCCcccccC
Confidence 9999999999998 357899999988888777754 22223455677788899999999999 9999999
Q ss_pred CCCCCC
Q 015161 407 HWDNIA 412 (412)
Q Consensus 407 d~~~~~ 412 (412)
|++.++
T Consensus 401 d~~~l~ 406 (412)
T 3stp_A 401 SDKHLQ 406 (412)
T ss_dssp CCTTGG
T ss_pred CHHHHH
Confidence 999874
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=518.78 Aligned_cols=338 Identities=16% Similarity=0.197 Sum_probs=286.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (412)
|||++|+++.+. ..++.++|||+|++|++||||+.. ..+.. ...++ .+.|.|+|+++.
T Consensus 4 mkIt~v~~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~---~~~i~~~l~p~liG~dp~ 62 (410)
T 3dip_A 4 PRITALRTIRLP--------------ERPKLIWVEVETEDGLTGLGETFR----GAQAV---EAVLHEQTAPAIIGRAAE 62 (410)
T ss_dssp CBEEEEEEEEET--------------TEEEEEEEEEEETTSCEEEEEEES----CHHHH---HHHHHHTHHHHHTTSBTT
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEeCCC----ChHHH---HHHHHHHHHHHhcCCCcc
Confidence 899999998763 135789999999999999999432 23332 23344 489999999999
Q ss_pred CHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecC---------------
Q 015161 125 ALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--------------- 187 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~--------------- 187 (412)
+++.+|+.|++...+.. ......|+|||||||||++||.+|+|||+||||. +++||+|.++..
T Consensus 63 ~~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~g~~~~~~~~~~~~ 142 (410)
T 3dip_A 63 NITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGS 142 (410)
T ss_dssp CHHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECTTTC------------
T ss_pred hHHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCcCCceeEEEecccccccccccccccccc
Confidence 99999999976432111 1123469999999999999999999999999996 579999965421
Q ss_pred --------CCHHH----HHHHHHHHHHcCCCEEeE--------ecCC-----ChhHHHHHHHHHHHh-CCCcEEEEeCCC
Q 015161 188 --------VSPAE----AAELASKYRKQGFTTLKL--------KVGK-----NLKEDIEVLRAIRAV-HPDSSFILDANE 241 (412)
Q Consensus 188 --------~~~~~----~~~~~~~~~~~Gf~~~Ki--------KvG~-----~~~~D~~~v~avr~~-~~~~~l~vDaN~ 241 (412)
.++++ ..+.+++++++||++||+ |+|. ++++|+++|++||++ ++++.|++|+|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~ 222 (410)
T 3dip_A 143 AELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHS 222 (410)
T ss_dssp ----------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTT
T ss_pred cccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCC
Confidence 12222 255677888999999999 9884 357899999999998 789999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecC-CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
+|++++|++++++|+++++ .||||| ++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|+
T Consensus 223 ~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 296 (410)
T 3dip_A 223 LWGTHAAARICNALADYGV--LWVEDPIAKMDNIPAVADLRR----QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDL 296 (410)
T ss_dssp CBCHHHHHHHHHHGGGGTC--SEEECCBSCTTCHHHHHHHHH----HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECT
T ss_pred CCCHHHHHHHHHHHHhcCC--CEEECCCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecc
Confidence 9999999999999999997 499999 89999999999975 5789999999999999999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecc-c-CCcccccCCCCCceeeeCcEEeeC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL-D-TPLLLSEDPVLDGYEVSGAVYKFT 397 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~-~-~p~~~~~d~~~~~~~~~~G~~~~p 397 (412)
+++| ++++++++++|+++|+++++|++ |+|++++++||++++||+.++|+ + ....+.+|++.++++++||++.+|
T Consensus 297 ~~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p 374 (410)
T 3dip_A 297 TWCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAIFQEVVRASLATWYADLVDHLPVIQEGIALAP 374 (410)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBCCEEEECTTSCCTHHHHBSCCCCEETTEEECC
T ss_pred cccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCeEEEeccccCchhHHhhcCCCCcccCCEEECC
Confidence 9997 99999999999999999999998 99999999999999999998884 3 122234677888899999999999
Q ss_pred CCCCcccccCCCCCC
Q 015161 398 NARGHGGFLHWDNIA 412 (412)
Q Consensus 398 ~~pGlG~~ld~~~~~ 412 (412)
++||||+++|++.++
T Consensus 375 ~~PGlGve~d~~~l~ 389 (410)
T 3dip_A 375 TRPGLGTALLPHVRK 389 (410)
T ss_dssp CSSBTSCCBCTTGGG
T ss_pred CCCCCCcccCHHHHh
Confidence 999999999999874
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-66 Score=517.04 Aligned_cols=338 Identities=20% Similarity=0.302 Sum_probs=282.1
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~ 122 (412)
..|||++|+.+..+ +.++|||+|++|++||||+.+ ++.+... ..+ +.+.|.|+|+|
T Consensus 21 ~~mkIt~v~~~~~~-----------------~~~~V~v~Td~G~~G~GE~~~---~~~~~~~---~~i~~~l~p~LiG~d 77 (388)
T 3tcs_A 21 QSMKLKAIETFTND-----------------AVGFVRVTTQDGAQGWGQVST---YHADITC---TVLHRQVAPWMLGQD 77 (388)
T ss_dssp --CBEEEEEEEECS-----------------SCEEEEEEETTSCEEEEECCS---SSHHHHH---HHHHHHTHHHHTTSB
T ss_pred cccEEEEEEEEEeC-----------------CeEEEEEEECCCCEEEEeccC---CccHHHH---HHHHHHHHHHhCCCC
Confidence 45999999976521 358999999999999999864 2333322 223 45899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKY 200 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~ 200 (412)
+.+++.+|+.|+....+........|+|||||||||++||.+|+|||+||||..+++|+|.+... .++++..+++.+.
T Consensus 78 ~~~~e~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~ 157 (388)
T 3tcs_A 78 ITDLDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRL 157 (388)
T ss_dssp CTTHHHHHHHHHHHTTTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCEEEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCCCceEEEEecCcCCCChHHHHHHHHHH
Confidence 99999999999764322221112358999999999999999999999999999889999987532 3676665655554
Q ss_pred -HHcCCCEEeEecCCC--------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 201 -RKQGFTTLKLKVGKN--------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 201 -~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
.++||++||+|+|.+ +++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++. |||||++
T Consensus 158 ~~~~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~ 235 (388)
T 3tcs_A 158 RDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFC--HFEEPCP 235 (388)
T ss_dssp HHHHCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCC--EEECCSC
T ss_pred HHhcCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCe--EEECCCC
Confidence 578999999999943 45688999999997 89999999999999999999999999999974 9999999
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcc
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 236 ~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~h~~~- 310 (388)
T 3tcs_A 236 YWELAQTKQVTD----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTPHCAN- 310 (388)
T ss_dssp TTCHHHHHHHHH----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCCCCCS-
T ss_pred ccCHHHHHHHHH----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCC-
Confidence 999999999975 67899999999999999999999999999999999997 999999999999999999999985
Q ss_pred hHHHHHHHHHHHccCCCC-ceeccc--CC--cccccCCC-CCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 350 TRLAMGFAGHLSAGLGCF-KFIDLD--TP--LLLSEDPV-LDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 350 s~i~~~a~~hlaaa~~~~-~~~e~~--~p--~~~~~d~~-~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++.++++|+++++||+ .++|+. ++ ..+.++++ .++++++||++.+|++||||+++|++.|
T Consensus 311 ~~~~~~a~~hl~aa~pn~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~G~i~vp~~PGLGveld~~~l 378 (388)
T 3tcs_A 311 WSLVTLFTMHLLRAIPNAGKYLEFSIEGPDYYPWQEGLFVKTPYEIEDGHARVTDAPGWGVEISPEWL 378 (388)
T ss_dssp TTTHHHHHHHHHTTCTTBCSCEEEECCCTTTCGGGTTCBSSCSCCCBTTEEEECSSSBTCCCBCHHHH
T ss_pred cHHHHHHHHHHHHhCCCccceeEeecCcccccchhhhhccCCCceeeCCEEECCCCCCCCCeECHHHH
Confidence 557778899999999997 466643 21 12335666 5678899999999999999999999875
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=518.04 Aligned_cols=346 Identities=20% Similarity=0.250 Sum_probs=304.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCc------eeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHH
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~------~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~ 117 (412)
+.|||++|+++.+++|++.||+++.+ +++.++.++|+|+|++|++||||++ .+.++.+.+. ..++.++|.
T Consensus 24 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~~~---~~~~~l~p~ 99 (398)
T 2pp0_A 24 TGDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSY-SKRAGGQGIY---AHAKEIADN 99 (398)
T ss_dssp HSCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEE-ESSTTHHHHH---HHHHHHGGG
T ss_pred CCCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEec-CccchHHHHH---HHHHHHHHH
Confidence 55999999999999999999999865 6778899999999999999999994 2333433222 234568999
Q ss_pred HcCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--C-CHHH
Q 015161 118 LKESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAE 192 (412)
Q Consensus 118 l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~-~~~~ 192 (412)
|+|+++.+++.+|+.|.+.. .++.. ...+|++||||||||+.||.+|+|||+||||.++++|+|.+++. . ++++
T Consensus 100 l~G~d~~~~~~i~~~l~~~~~~~~~~~-~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~vp~y~~~g~~~~~~~e~ 178 (398)
T 2pp0_A 100 LLGEDPNDIDKIYTKLLWAGASVGRSG-MAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQ 178 (398)
T ss_dssp GTTSCTTCHHHHHHHHHHHTGGGCSST-HHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSCSEEEEEECTTSCTTSCHHH
T ss_pred HcCCCchhHHHHHHHHHHhhcccCCch-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEecCCcCCCCHHH
Confidence 99999999999999997652 33321 12469999999999999999999999999999889999988533 3 8999
Q ss_pred HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 193 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
+.+.+++++++||+.+|+|+| .+++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++
T Consensus 179 ~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i--~~iEqP~~ 256 (398)
T 2pp0_A 179 VLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNL--IWIEEPLD 256 (398)
T ss_dssp HHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTC--SCEECCSC
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC--ceeeCCCC
Confidence 999999999999999999999 4789999999999997 8999999999999999999999999999997 49999999
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcc
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 257 ~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h~~~~ 332 (398)
T 2pp0_A 257 AYDIEGHAQLAA----ALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAME 332 (398)
T ss_dssp TTCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH
T ss_pred hhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeecCccH
Confidence 999999999975 57899999999999999999999999999999999998 9999999999999999999998754
Q ss_pred hHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCC
Q 015161 350 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409 (412)
Q Consensus 350 s~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~ 409 (412)
+ ++|++++++++.++|+.. +..+++.++++++||++.+|++||||+++|++
T Consensus 333 ~------~~~laaa~~~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~ 383 (398)
T 2pp0_A 333 V------HLHLSAAYPLEPWLEHFE---WLNPLFNEQLELRDGRMWISDRHGLGFTLSEQ 383 (398)
T ss_dssp H------HHHHHHTCSSCCCEEECS---TTGGGBSCCCEEETTEEECCSSSBTCCCBCHH
T ss_pred H------HHHHHhcCCCcceeeccc---chhhhccCCCeeeCCEEECCCCCCCCcccCHH
Confidence 3 689999999999888642 23456777889999999999999999999987
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=514.10 Aligned_cols=341 Identities=18% Similarity=0.238 Sum_probs=301.0
Q ss_pred eEEeEEEEEEEEecccccee---cc-CceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcC
Q 015161 46 VDVQRAENRPLNVPLIAPFT---IA-TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKE 120 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~---~a-~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g 120 (412)
|||++|+++++++|++.||+ ++ .++++.++.++|+|+|++|++||||+.. ++. +...++ .++|.|+|
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~------~~~--~~~~i~~~l~~~l~g 72 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP------EIV--RPHVIEKFVKKVLIG 72 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG------GGG--CHHHHHHTHHHHHTT
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC------chH--HHHHHHHHHHHHHcC
Confidence 89999999999999999998 87 6778888999999999999999999972 222 223445 38899999
Q ss_pred CCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceee--c------CCCH
Q 015161 121 SPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI--P------IVSP 190 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i--~------~~~~ 190 (412)
+++.+++.+|+.|++.. .|... ..+|++||||||||+.||.+|+|||+||||.++++|+|.++ + ..++
T Consensus 73 ~d~~~~~~~~~~l~~~~~~~g~~~--~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~~~~~~~g~~~~~~~~~~ 150 (382)
T 1rvk_A 73 EDHRDRERLWQDLAHWQRGSAAQL--TDRTLAVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATP 150 (382)
T ss_dssp SBTTCHHHHHHHHHHHHTTTTTCS--CHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSCSEEEEEEEECCCCCCTTTTSSH
T ss_pred CChHHHHHHHHHHHHhhhcccchH--HHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCCCcceecEEeccCccccccCCCH
Confidence 99999999999985532 22111 23589999999999999999999999999987799999543 3 4689
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCC
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 262 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~ 262 (412)
+++.+.+++++++||+.+|+|+|. +++.|+++|++||++ ++++.|++|+|++|++++|+++++.|+++++
T Consensus 151 e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-- 228 (382)
T 1rvk_A 151 EDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGF-- 228 (382)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--
Confidence 999999999999999999999996 789999999999996 8999999999999999999999999999997
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 263 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
.|||||++++|++++++|++ ++++||++||++++ +++++++++.+++|++|+|++++| ++++++++++|+++|+
T Consensus 229 ~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~ 304 (382)
T 1rvk_A 229 DWIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGM 304 (382)
T ss_dssp SEEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTC
T ss_pred CEEeCCCChhhHHHHHHHHh----hCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCC
Confidence 49999999999999999975 57899999999999 999999999999999999999997 9999999999999999
Q ss_pred cEEEccCcchHHHHHHHHHHHccCCCCceeccc----------CCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 341 NLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD----------TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 341 ~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~----------~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
++++| +.+++ ++|++++++++.++|+. +|+ +.+|++ ++++ +||++.+|++||||+++|++.
T Consensus 305 ~~~~~-~~~~~-----~~~laaa~~~~~~~E~~~~~~~~~~~~~~~-~~~d~~-~~~~-~~G~~~~p~~PGlGv~~d~~~ 375 (382)
T 1rvk_A 305 ECEVH-GNTAM-----NLHVVAATKNCRWYERGLLHPFLEYDDGHD-YLKSLS-DPMD-RDGFVHVPDRPGLGEDIDFTF 375 (382)
T ss_dssp CEEEC-CCSHH-----HHHHHHHCSSCCCEEEEEECTTSCGGGCCT-TBSSCS-SCBC-TTSEEECCSCSBTCCCBCHHH
T ss_pred eEeec-CCCCH-----HHHHHHhCCccceeeeccccccccccccch-hHHhhc-cCCC-cCCEEECCCCCCCccccCHHH
Confidence 99999 56776 89999999998887754 343 357777 7788 999999999999999999986
Q ss_pred C
Q 015161 411 I 411 (412)
Q Consensus 411 ~ 411 (412)
+
T Consensus 376 l 376 (382)
T 1rvk_A 376 I 376 (382)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-65 Score=514.98 Aligned_cols=346 Identities=20% Similarity=0.207 Sum_probs=300.0
Q ss_pred eeEEeEEEEEEEEeccccceeccCc------eeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATS------RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~------~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l 118 (412)
+|||++|+++.+++|++.||+++.+ +++.++.++|+|+|++|++||||++ .+.++.+.+. ..++.++|.|
T Consensus 12 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~~~---~~i~~l~~~l 87 (393)
T 2og9_A 12 SDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSY-SKRAGGPGQF---AHAREIAPAL 87 (393)
T ss_dssp CCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEE-EESTTHHHHH---HHHHHHGGGG
T ss_pred CCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEec-CcccchHHHH---HHHHHHHHHH
Confidence 4999999999999999999999976 6778899999999999999999994 2333444332 2345689999
Q ss_pred cCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--C-CHHHH
Q 015161 119 KESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V-SPAEA 193 (412)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~-~~~~~ 193 (412)
+|+++.+++.+|+.|.... .++.. ...+|++||||||||+.||.+|+|||+||||.++++|+|.+++. . +++++
T Consensus 88 ~G~d~~~~~~i~~~l~~~~~~~~~~~-~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~y~~~g~~~~~~~e~~ 166 (393)
T 2og9_A 88 IGEDPSDIAKLWDKLCWAGASAGRSG-LSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQL 166 (393)
T ss_dssp TTSCTTCHHHHHHHHHHTTGGGCSSS-HHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSCSEEEEEBCTTCCTTSCHHHH
T ss_pred cCCChhhHHHHHHHHHHhhhhcCCch-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEECCCcCCCCHHHH
Confidence 9999999999999987642 23321 12368999999999999999999999999999889999988533 3 89999
Q ss_pred HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCC
Q 015161 194 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~ 271 (412)
.+.+++++++||+.+|+|+| .+++.|+++|++||++ ++++.|++|+|++|++++|+++++.|+++++ .|||||+++
T Consensus 167 ~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~ 244 (393)
T 2og9_A 167 MVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNL--VWIEEPLDA 244 (393)
T ss_dssp HHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCc
Confidence 99999999999999999999 4789999999999997 8999999999999999999999999999997 499999999
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 245 ~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~- 319 (393)
T 2og9_A 245 YDHEGHAALAL----QFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPHFAME- 319 (393)
T ss_dssp TCHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH-
T ss_pred ccHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEeccCccH-
Confidence 99999999975 57899999999999999999999999999999999997 9999999999999999999999754
Q ss_pred HHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 351 RLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
.++|++++++++.++|+. + +..+++.++++++||++.+|++||||+++|++.
T Consensus 320 -----~~~~laaa~~~~~~~e~~-~--~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 371 (393)
T 2og9_A 320 -----LHVHLAAAYPREPWVEHF-E--WLEPLFNERIEIRDGRMLVPTRPGLGLTLSGQV 371 (393)
T ss_dssp -----HHHHHHHTSSSCCEEECC-C--TTGGGBSCCCCEETTEEECCCSSBTCCCBCTHH
T ss_pred -----HHHHHHhhCCCCceeecc-c--chHHHccCCCeeeCCEEECCCCCCCCeeeCHHH
Confidence 468999999999998864 2 234567778899999999999999999999874
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-66 Score=525.35 Aligned_cols=349 Identities=19% Similarity=0.258 Sum_probs=298.8
Q ss_pred eeEEeEEEEEEEEeccccceeccCce-eeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSR-LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
+|||++|+++++..+ ..|..+.+|. ......++|+|+|++|++||||+.. .+.+. ..++.+.|.|+|+++
T Consensus 4 ~~~It~v~~~~v~~~-d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~dp 74 (450)
T 3mzn_A 4 FPKITKMNVVPVAGE-DGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPS-----SEGIL---NGLEKCRSLVEGARV 74 (450)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHTHHHHTTCBG
T ss_pred CCEEEEEEEEEeccc-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhCCCCh
Confidence 579999999999887 5555544443 3345678999999999999999853 23332 234668999999999
Q ss_pred CCHHHHHHHHHhhcCCC----cc------hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC--CC-CCeeeeceee-----
Q 015161 124 MALGSVFGVVAGLLPGH----QF------ASQLKVRAAVEMALIDAVAKSVSMPLWRLFG--GV-SNTITTDITI----- 185 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~----~~------~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG--g~-~~~i~~~~~i----- 185 (412)
.+++.+|+.|++.+.++ .. .....|+||||+||||++||.+|+|||+||| |+ +++||+|.+.
T Consensus 75 ~~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v~~y~~~~~~gd 154 (450)
T 3mzn_A 75 NEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGD 154 (450)
T ss_dssp GGHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEEEBCEEEECBCC
T ss_pred hhHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceEEeeeeeccccc
Confidence 99999999998754211 00 1134699999999999999999999999999 54 5689987542
Q ss_pred ------------------------cCCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC
Q 015161 186 ------------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA 239 (412)
Q Consensus 186 ------------------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa 239 (412)
+..+|++++++++++++ +||++||+|+|. ++++|+++|++||+++|++.|++|+
T Consensus 155 ~~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDa 234 (450)
T 3mzn_A 155 PDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDP 234 (450)
T ss_dssp GGGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred cccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 13578999999999887 699999999995 7899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
|++|++++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||++++..+++++++.+++|+
T Consensus 235 N~~w~~~~A~~~~~~L~~~-i--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di 307 (450)
T 3mzn_A 235 NGAWKLDEAVRVLEPIKHL-L--SYAEDPCGQEGGFSGRETMAEFKK----RTGLPTATNMIATDYKQLQYAVQLNSVDI 307 (450)
T ss_dssp TTCBCHHHHHHHHGGGGGG-C--SEEESSBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHhhhc-c--ceeeCCCCcccccchHHHHHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCE
Confidence 9999999999999999998 6 49999999998 789999875 67899999999999999999999999999
Q ss_pred EEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccc--cCCCCCceeeeCc
Q 015161 316 INIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGA 392 (412)
Q Consensus 316 v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G 392 (412)
+|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||+ +.+++.++.+. ++++.++++++||
T Consensus 308 ~~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~-~~~~d~~~~~~~~~~l~~~~~~~~~G 385 (450)
T 3mzn_A 308 PLADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE-ITAIDTHWIWQDGQRITREPFQIRDG 385 (450)
T ss_dssp EBCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHTTCCSBSSCCCCBTT
T ss_pred EEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccccccccCCCeEECC
Confidence 99998 676 9999999999999999999999999999999999999999986 45666554333 4677888899999
Q ss_pred EEeeCCCCCcccccCCCCC
Q 015161 393 VYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 393 ~~~~p~~pGlG~~ld~~~~ 411 (412)
++.+|++||||+|+|+++|
T Consensus 386 ~i~vp~~PGLGveld~~~l 404 (450)
T 3mzn_A 386 KLTVPKTPGLGIELDDDKL 404 (450)
T ss_dssp EEECCCSSBTSCCBCHHHH
T ss_pred EEECCCCCcCCCccCHHHH
Confidence 9999999999999999875
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-65 Score=517.39 Aligned_cols=350 Identities=17% Similarity=0.226 Sum_probs=299.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
.|||++|+++.+.+|+..|++. ...++|||+|++|++||||+.+..+.+.++ +...++++.|.|+|+++.
T Consensus 3 ~MkI~~i~~~~~~~p~~~p~~~-------~~~v~V~v~td~G~~G~Ge~a~~~g~~~~~---~~~~i~~l~p~liG~d~~ 72 (407)
T 2o56_A 3 LMKITSVDIIDVANDFASATSK-------WRPVVVKINTDEGISGFGEVGLAYGVGASA---GIGMAKDLSAIIIGMDPM 72 (407)
T ss_dssp CCCEEEEEEEECCCCC-----C-------CCCEEEEEEETTSCEEEEEESCSSSSCHHH---HHHHHHHHHHHHTTSCTT
T ss_pred CCEEEEEEEEEeccccCCCccc-------ceeEEEEEEeCCCCEEEEeeccCCCCchHH---HHHHHHHHHHHhCCCChH
Confidence 3899999999999999998642 135899999999999999993322223333 334456689999999999
Q ss_pred CHHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee-ec--CC---------C
Q 015161 125 ALGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV---------S 189 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~---------~ 189 (412)
+++.+|+.|.+...+ +......+|++||||||||+.||.+|+|||+||||. ++++|+|.+ ++ .. +
T Consensus 73 ~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~ 152 (407)
T 2o56_A 73 NNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTE 152 (407)
T ss_dssp CHHHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSSEEEEEECGGGCCSTTCTTCCCCS
T ss_pred HHHHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCCCCeeeeeeeeccCCccccccccccCC
Confidence 999999999764322 111112468999999999999999999999999996 568999976 53 34 8
Q ss_pred HHHHHHHHHHHHHcCCCEEeEec------CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 249 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKv------G~-------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~ 249 (412)
++++.+.+++++++||+++|+|+ |. +++.|+++|++||++ ++++.|++|+|++|++++|+
T Consensus 153 ~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 232 (407)
T 2o56_A 153 PEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAI 232 (407)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 89999999999999999999997 53 467899999999996 89999999999999999999
Q ss_pred HHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHH
Q 015161 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGA 328 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~ 328 (412)
++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++
T Consensus 233 ~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~ 306 (407)
T 2o56_A 233 QFGRMIEELGI--FYYEEPVMPLNPAQMKQVAD----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEV 306 (407)
T ss_dssp HHHHHHGGGCC--SCEECSSCSSSHHHHHHHHH----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred HHHHHHHhcCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 99999999997 49999999999999999985 57899999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC--cccccCCCCCceeeeCcEEeeCCCCCccccc
Q 015161 329 LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGFL 406 (412)
Q Consensus 329 l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~l 406 (412)
++++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+.+|++.++++++||++.+|++||||+++
T Consensus 307 ~~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~ 385 (407)
T 2o56_A 307 KKICDMAHVYDKTVQIHVCG-GPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQEL 385 (407)
T ss_dssp HHHHHHHHTTTCEECCCCCS-CHHHHHHHHHHHHHCTTBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCB
T ss_pred HHHHHHHHHcCCeEeecCCC-CHHHHHHHHHHHHhCCCceeEeeccccccccHHHhccCCceecCCEEECCCCCCCCcee
Confidence 99999999999999999995 99999999999999999998886421 1135688888889999999999999999999
Q ss_pred CCCCC
Q 015161 407 HWDNI 411 (412)
Q Consensus 407 d~~~~ 411 (412)
|++.+
T Consensus 386 d~~~l 390 (407)
T 2o56_A 386 TEETM 390 (407)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 99865
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-65 Score=518.74 Aligned_cols=354 Identities=19% Similarity=0.219 Sum_probs=291.8
Q ss_pred eeEEeEEEEEEEEeccccceeccCce--eeeeeEEEEEEEECC--CcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~--~~~~~~~lV~v~t~~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
.|||++|+++.+++|++.|+..+.+. ....+.++|+|+||+ |++||||+.+... +.+. +...++.+.|.|+|
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g~-~~~~---~~~~i~~l~~~liG 79 (441)
T 4a35_A 4 RGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGK-GTEV---VVCAVNALAHHVLN 79 (441)
T ss_dssp CCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEECST-THHH---HHHHHHHHGGGTTT
T ss_pred CCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCCCC-ChHH---HHHHHHHHHHHhCC
Confidence 48999999999999999888765443 345678999999998 9999999986421 2222 23345678999999
Q ss_pred CCCCCHHHHHHHHHhhc--------CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC---------------
Q 015161 121 SPAMALGSVFGVVAGLL--------PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN--------------- 177 (412)
Q Consensus 121 ~~~~~~~~~~~~l~~~~--------~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~--------------- 177 (412)
+|+.+++.+|+.+++.+ .|+..+....|+||||+||||++||.+|+|||+||||..+
T Consensus 80 ~d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~i~~~~~~~y~~d~ 159 (441)
T 4a35_A 80 KDLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYITDV 159 (441)
T ss_dssp CBHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCHHHHHTTCCCTTTTTT
T ss_pred CCHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccceecccccccccc
Confidence 99999865554444321 1221122357999999999999999999999999999742
Q ss_pred ---------------------------eeeeceee-c--CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHH
Q 015161 178 ---------------------------TITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227 (412)
Q Consensus 178 ---------------------------~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr 227 (412)
.+|.|.+. + ..+++++.+++++++++||++||+|+|.++++|+++|+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~avR 239 (441)
T 4a35_A 160 LTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIR 239 (441)
T ss_dssp CCHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHH
Confidence 25677653 2 24899999999999999999999999999999999999999
Q ss_pred Hh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 228 AV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 228 ~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
++ +|++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++.++ .+++||++||++++..++++
T Consensus 240 ~a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~--~~iEeP~~~~d~~~~~~l~~~l~-~~~iPIa~gE~~~~~~~~~~ 316 (441)
T 4a35_A 240 DMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKP--LWIEEPTSPDDILGHATISKALV-PLGIGIATGEQCHNRVIFKQ 316 (441)
T ss_dssp HHHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHHHHG-GGTCEEEECTTCCSHHHHHH
T ss_pred HHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCc--cEEeCCCCcccHHHHHHHHHhcc-CCCCCEEeCCccccHHHHHH
Confidence 98 8999999999999999999999999999987 59999999999999999985321 26899999999999999999
Q ss_pred HHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHH-HHHH-------ccCCCCceecccCCcc
Q 015161 307 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA-GHLS-------AGLGCFKFIDLDTPLL 377 (412)
Q Consensus 307 ~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~-~hla-------aa~~~~~~~e~~~p~~ 377 (412)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+. +++++++ .|++ ++.++..++|+..+
T Consensus 317 ~l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~~H~~---~ig~aa~~~hl~~~~~~~l~~~~~~~~~E~~~~-- 391 (441)
T 4a35_A 317 LLQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHAG---GVGLCELVQHLIIFDYISVSASLENRVCEYVDH-- 391 (441)
T ss_dssp HHHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBCCCCC---TTTHHHHHHHHHHHHHHHTSCCCTTCCEEECCS--
T ss_pred HHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCC---hHHHHHHHHHHhhhhhcccccCcccceeeccch--
Confidence 999999999999999998 99999999999999999999863 4555443 3553 23344556776432
Q ss_pred cccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 378 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 378 ~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
.++++.++++++||++.+|++||||+++|++++
T Consensus 392 -~~~~~~~p~~~~dG~i~vp~~PGLGveld~~~l 424 (441)
T 4a35_A 392 -LHEHFKYPVMIQRASYMPPKDPGYSTEMKEESV 424 (441)
T ss_dssp -SGGGBSSCCEESSSEEECCCSSBCSCCBCHHHH
T ss_pred -hhhcccCCceeeCCEEECCCCCcCCcccCHHHH
Confidence 356778889999999999999999999999875
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=522.93 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=296.6
Q ss_pred eeEEeEEEEEEEEeccccceeccCceee-eeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~-~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
.|||++|+++++..+ ..|+.+..|... .....+|+|+|++|++||||+.. ++.+. ..++.+.|.|+|+++
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~-----~~~v~---~~i~~l~p~LiG~dp 78 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPG-----GATIE---NALTEAIPHVVGRPI 78 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----SHHHH---HHHHHHGGGTTTCBG
T ss_pred CCEEEEEEEEEeccC-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHhcCCCh
Confidence 479999999999998 667766665533 35678999999999999999853 23332 234678999999999
Q ss_pred CCHHHHHHHHHh--hcCCCc----ch----hhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CCeeeeceee------
Q 015161 124 MALGSVFGVVAG--LLPGHQ----FA----SQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITI------ 185 (412)
Q Consensus 124 ~~~~~~~~~l~~--~~~g~~----~~----~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-g~-~~~i~~~~~i------ 185 (412)
.+++.+|+.|++ .+.++. .. ....|+||||+||||++||.+|+|||+||| |+ +++||+|.+.
T Consensus 79 ~~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v~~y~~~~~~gd~ 158 (455)
T 3pfr_A 79 SILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFYVGDD 158 (455)
T ss_dssp GGHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCCCSEEEBCEEECCBCCG
T ss_pred hHHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcCCeEEEeeeecccccc
Confidence 999999999987 443211 00 014699999999999999999999999999 65 5789987542
Q ss_pred -----------------------cCCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCC
Q 015161 186 -----------------------PIVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDAN 240 (412)
Q Consensus 186 -----------------------~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN 240 (412)
...++++++++++++++ +||++||+|+|. ++++|+++|++||+++|++.|++|+|
T Consensus 159 ~~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN 238 (455)
T 3pfr_A 159 KITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEGSKEIDTVIELKKHFPDARITLDPN 238 (455)
T ss_dssp GGSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCeEeecCC
Confidence 12578999999999887 699999999995 78999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
++|++++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||++++..+++++++.+++|++
T Consensus 239 ~~w~~~~A~~~~~~L~~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~ 311 (455)
T 3pfr_A 239 GCWSLDEAIQLCKGLNDV-L--TYAEDPCIGENGYSGREIMAEFRR----RTGIPTATNMIATNWREMCHAIMLQSVDIP 311 (455)
T ss_dssp TBSCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHhhccc-c--eeeecCCChhhccchHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999998 6 49999999998 689999875 578999999999999999999999999999
Q ss_pred EecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccc---cCCCCCceeeeCc
Q 015161 317 NIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS---EDPVLDGYEVSGA 392 (412)
Q Consensus 317 ~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~---~d~~~~~~~~~~G 392 (412)
|+|+ ++| ++++++++++|+++|+++++|++.+++|++++++|+++++||+ ..+++.++.+. ++++.++++++||
T Consensus 312 ~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~-~~~~d~~~~~~~~~~~l~~~p~~~~dG 389 (455)
T 3pfr_A 312 LADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN-PTALDTHWIWQEGDFYLTKNPLEIKDG 389 (455)
T ss_dssp BCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC-CCCBCCCGGGTTTTCCSBSSCCCEETT
T ss_pred EecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccchhhccCCCCeEECC
Confidence 9998 676 9999999999999999999999999999999999999999986 33444443222 4677888899999
Q ss_pred EEeeCCCCCcccccCCCCC
Q 015161 393 VYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 393 ~~~~p~~pGlG~~ld~~~~ 411 (412)
++.+|++||||+|+|+++|
T Consensus 390 ~i~vp~~PGLGveld~~~l 408 (455)
T 3pfr_A 390 KIKLNDKPGLGIELNMDNV 408 (455)
T ss_dssp EEECCSCSBTCCCBCHHHH
T ss_pred EEeCCCCCcCCcccCHHHH
Confidence 9999999999999999875
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-65 Score=515.47 Aligned_cols=353 Identities=16% Similarity=0.203 Sum_probs=302.2
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
|.|||++|+++.+.+|++.+... . ...++|||+|++|++||||+.+..+.+.++ +...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~pl~~~~~~---~---~~~v~V~v~td~G~~G~Ge~~~~~g~~~~~---~~~~i~~l~p~liG~d~ 71 (410)
T 2gl5_A 1 MSLKITSIEVFDCELKKRDQTMS---S---YNPVLIRVNTDSGLSGIGEVGLAYGAGAKA---GVGIIRDLAPLIVGEDP 71 (410)
T ss_dssp -CCCEEEEEEEECCGGGTCGGGT---T---CCCEEEEEEETTSCEEEEEESCSSSTTHHH---HHHHHHHHGGGTTTSCT
T ss_pred CCceEEEEEEEEecccccccCcc---c---ccceEEEEEeCCCCEEEEeecCcCCCChHH---HHHHHHHHHHHhCCCCh
Confidence 45999999999999998764311 1 135799999999999999993322222333 33445568999999999
Q ss_pred CCHHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee-ec--CC-------CH
Q 015161 124 MALGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 190 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~-------~~ 190 (412)
.+++.+|+.|.+...+ +......+|++||||||||++||.+|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 72 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 151 (410)
T 2gl5_A 72 LNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKNHILVTP 151 (410)
T ss_dssp TCHHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSEEEEEECGGGCCTTCCSCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceeEeEecccCCccccccccCCH
Confidence 9999999999764322 111112468999999999999999999999999996 568999987 65 34 89
Q ss_pred HHHHHHHHHHHHcCCCEEeEec------CC------------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 015161 191 AEAAELASKYRKQGFTTLKLKV------GK------------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 245 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKv------G~------------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~ 245 (412)
+++.+.+++++++||+++|+|+ |. +++.|+++|++||++ ++++.|++|+|++|++
T Consensus 152 ~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 231 (410)
T 2gl5_A 152 EEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGT 231 (410)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 9999999999999999999997 53 457899999999996 8999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++++|++++|
T Consensus 232 ~~ai~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 305 (410)
T 2gl5_A 232 NSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGG 305 (410)
T ss_dssp HHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTH
T ss_pred HHHHHHHHHHHhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999987 59999999999999999975 57899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC--cccccCCCCCceeeeCcEEeeCCCCCc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGH 402 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~pGl 402 (412)
++++++++++|+++|+++++|++ +|+|+.++++|+++++||+.++|+... ..+.+|++.++++++||++.+|++|||
T Consensus 306 it~~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGl 384 (410)
T 2gl5_A 306 ITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGL 384 (410)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCHHHHTTBSSCCCCBTTEECCCCSSBT
T ss_pred HHHHHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcceeeeeccccccchHHHhccCCceecCCEEECCCCCcC
Confidence 99999999999999999999999 599999999999999999998887421 113568888888999999999999999
Q ss_pred ccccCCCCCC
Q 015161 403 GGFLHWDNIA 412 (412)
Q Consensus 403 G~~ld~~~~~ 412 (412)
|+++|++.++
T Consensus 385 Gv~~d~~~l~ 394 (410)
T 2gl5_A 385 GQELNDEVVK 394 (410)
T ss_dssp SCCBCHHHHT
T ss_pred CcccCHHHHH
Confidence 9999998763
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-65 Score=512.19 Aligned_cols=345 Identities=18% Similarity=0.224 Sum_probs=299.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhH-HHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~ 122 (412)
|.|||++|+++.+. |. ++ ..++|+|+|++|++||||+.+. | +++...+...++.+.| .|+|++
T Consensus 1 m~mkI~~i~~~~v~-~~--~~----------~~v~V~v~td~G~~G~GE~~~~--~-g~~~~~~~~~i~~l~~~~l~G~d 64 (392)
T 2poz_A 1 MSLKITGVNIYLLK-SG--RL----------HPVLVEISTDEGITGAGEAGIA--Y-GVGGTAAAGMIKDLSERFLIGKD 64 (392)
T ss_dssp --CCEEEEEEEECC-BT--TB----------CCEEEEEEETTSCCEEEEESCS--S-SSCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCeEEEEEEEEEe-cC--Cc----------cEEEEEEEECCCCEEEEeecCC--c-CCchHHHHHHHHHhhHhhhcCCC
Confidence 45999999999987 43 22 2689999999999999999753 2 4455455555667899 999999
Q ss_pred CCCHHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee--e-cCCCHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT--I-PIVSPAEAAEL 196 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~--i-~~~~~~~~~~~ 196 (412)
+.+++.+|+.|.+...+ +......+|++||||||||+.||.+|+|||+||||. ++++|+|.+ . +..+++++.+.
T Consensus 65 ~~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~v~~y~~g~~~~~~~~~~~~~~ 144 (392)
T 2poz_A 65 PSRIEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARA 144 (392)
T ss_dssp TTCHHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEECSCCTTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeccccCCCCHHHHHHH
Confidence 99999999999775332 221112468999999999999999999999999996 568999875 2 24689999999
Q ss_pred HHHHHHcCCCEEeEecC------------------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 197 ASKYRKQGFTTLKLKVG------------------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG------------------~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
+++++++||+++|+|+| .+++.|+++|++||++ ++++.|++|+|++|++++|+++++.|++
T Consensus 145 a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~ 224 (392)
T 2poz_A 145 VERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGE 224 (392)
T ss_dssp THHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998 2467899999999996 8999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 258 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 258 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
+++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+
T Consensus 225 ~~i--~~iE~P~~~~~~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 298 (392)
T 2poz_A 225 LDI--CFVEEPCDPFDNGALKVISE----QIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAE 298 (392)
T ss_dssp GCE--EEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHH
T ss_pred cCC--CEEECCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 987 59999999999999999985 57899999999999999999999999999999999998 999999999999
Q ss_pred HcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC--Cc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 337 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 337 ~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~--p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++++|++. |+|++++++||++++||+.++|+.. .+ .+.+|++.++++++||++.+|++||||+++|++.+
T Consensus 299 ~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 375 (392)
T 2poz_A 299 AYNMRVAPHVCG-SSLIETATLQLEANITNFMIHEHYPAFKADDGYVEVLENPPSISSGYFEMPNGPGLGAVLIKRNI 375 (392)
T ss_dssp TTTCEECCCCCS-SHHHHHHHHHHHHHCTTBCCEEECGGGGGSTTCCCCBSSCCCEETTEEECCCSSBTSCCBCHHHH
T ss_pred HcCCeEecCCCC-CHHHHHHHHHHHHhCCCceEEeeccccccCchHHHhccCCCeecCCEEECCCCCCCCceeCHHHH
Confidence 999999999997 9999999999999999998888652 11 23478888889999999999999999999999865
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=511.93 Aligned_cols=349 Identities=17% Similarity=0.192 Sum_probs=299.3
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
|.|||++|+++.+.+|..+|+ ..++|+|+|++|++||||+.+..+.+.+ .+...++++.|.|+|+++
T Consensus 1 m~MkI~~i~~~~~~~~~~~~~----------~~v~V~v~td~G~~G~Ge~~~~~g~~~~---~~~~~i~~l~p~l~G~d~ 67 (403)
T 2ox4_A 1 MSLKITKIEIFHVHTRPQSGQ----------RPILVKVSTDEGIYGLGEAGIAYGVGGS---AAAGILKDYAALLIGEDP 67 (403)
T ss_dssp -CCCEEEEEEEEECCCTTTCC----------CCEEEEEEETTSCEEEEEESCSSSSCHH---HHHHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEEEEEecCCCCCCc----------cceEEEEEeCCCCEEEEeecCCCCCchH---HHHHHHHHHHHHcCCCCH
Confidence 459999999999976532221 2589999999999999999332222333 333445668999999999
Q ss_pred CCHHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee-ec--CC-------CH
Q 015161 124 MALGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-IP--IV-------SP 190 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~-i~--~~-------~~ 190 (412)
.+++.+|+.|.+...+ +......+|++||||||||+.||.+|+|||+||||. ++++|+|.+ ++ .. ++
T Consensus 68 ~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~ 147 (403)
T 2ox4_A 68 FNTEAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWGKERKSKGRK 147 (403)
T ss_dssp TCHHHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSSEEEEEECGGGCSSSSCCCCCSH
T ss_pred HHHHHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeeeEeeccCCccccccccCCH
Confidence 9999999999764322 211112469999999999999999999999999996 568999987 64 34 89
Q ss_pred HHHHHHHHHHHHcCCCEEeEec------CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 015161 191 AEAAELASKYRKQGFTTLKLKV------GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKv------G~-------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~ 250 (412)
+++.+.+++++++||+++|+|+ |. +++.|+++|++||++ ++++.|++|+|++|++++|++
T Consensus 148 e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~ 227 (403)
T 2ox4_A 148 EEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQ 227 (403)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 9999999999999999999997 53 467899999999996 899999999999999999999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHH
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGAL 329 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l 329 (412)
+++.|+++++ .|||||++++|++++++|++ ++++||++||+++++++++++++.+++|++++|++++| +++++
T Consensus 228 ~~~~l~~~~i--~~iE~P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~ 301 (403)
T 2ox4_A 228 FAKAIEEFNI--FFYEEINTPLNPRLLKEAKK----KIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFK 301 (403)
T ss_dssp HHHHHGGGCE--EEEECCSCTTSTHHHHHHHH----TCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHH
T ss_pred HHHHHHhhCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHH
Confidence 9999999987 59999999999999999975 67899999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC--cccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP--LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 330 ~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p--~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+.+|++.++++++||++.+|++||||+++|
T Consensus 302 ~i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d 380 (403)
T 2ox4_A 302 KIADMAHIFEVTVQAHVAG-TGVAEAASLHAEIAIPNFCIHEHHQKTLLPEYEELCVHNYQPVKGRYKVPELPGIGQDIT 380 (403)
T ss_dssp HHHHHHHHTTCEECCCCCS-CHHHHHHHHHHHHTCSSBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBC
T ss_pred HHHHHHHHcCCEEeecCCC-CHHHHHHHHHHHHhCCCcceeeeccccccchHHHhccCCceecCCEEECCCCCCCCcccC
Confidence 9999999999999999995 99999999999999999998886321 11356888888899999999999999999999
Q ss_pred CCCCC
Q 015161 408 WDNIA 412 (412)
Q Consensus 408 ~~~~~ 412 (412)
++.++
T Consensus 381 ~~~l~ 385 (403)
T 2ox4_A 381 EKLYQ 385 (403)
T ss_dssp GGGGT
T ss_pred HHHHH
Confidence 99874
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-65 Score=511.01 Aligned_cols=345 Identities=19% Similarity=0.229 Sum_probs=296.9
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC--
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-- 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-- 123 (412)
|+| +++++++++|++.||+++.++++.++.++|+| |++|++||||+.+.+++++|+...+...++.++|.++|+++
T Consensus 3 ~~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~d~~~ 80 (377)
T 2pge_A 3 SGM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIR 80 (377)
T ss_dssp CCC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHSCCHH
T ss_pred cce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCCCccc
Confidence 466 89999999999999999999999999999999 89999999999988878888887777777788999999987
Q ss_pred ----------CCHHHHHHHHHhh------cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC
Q 015161 124 ----------MALGSVFGVVAGL------LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 187 (412)
Q Consensus 124 ----------~~~~~~~~~l~~~------~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~ 187 (412)
.+++.+++.|... +.........+|++||||||||+.||..|+|||+||||.++++|+|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~~~vp~~~~i~~ 160 (377)
T 2pge_A 81 LRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWM 160 (377)
T ss_dssp HHHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTSCCEEBCEEECC
T ss_pred hhhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEEeEEecC
Confidence 3445566555331 110000012358999999999999999999999999998789999999988
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
.+++++.++++++.++||+++|+|+| .++++|+++|+++|++ + +++.|++|+|++|++++|+++++.|+++++ .|
T Consensus 161 ~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~ 238 (377)
T 2pge_A 161 GEAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HS 238 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC---CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCC--SE
T ss_pred CCHHHHHHHHHHHHHHhhhhheeecCCCChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--cE
Confidence 89999999999999999999999999 4889999999999997 6 899999999999999999999999999997 49
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH--HHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCc
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD--VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 341 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~--~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~ 341 (412)
||||++++|++++++|++ ++++||++||++++..+ ++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 239 iEqP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~ 314 (377)
T 2pge_A 239 IEQPIRQHQWSEMAALCA----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIG 314 (377)
T ss_dssp EECCBCSSCHHHHHHHHH----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCE
T ss_pred EEccCCcccHHHHHHHHh----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCe
Confidence 999999999999999985 57899999999999888 889999999999999999998 99999999999999999
Q ss_pred EEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCC
Q 015161 342 LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNA 399 (412)
Q Consensus 342 ~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~ 399 (412)
+++|+++||++++++++|++++++++.++|++++..+.+|++ ++++++||++.+|++
T Consensus 315 ~~~~~~~es~i~~~a~~hlaa~~~~~~~~~l~~~~~~~~d~~-~~~~~~~G~~~~~~~ 371 (377)
T 2pge_A 315 FWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-SNLAVDGGLLGVSEG 371 (377)
T ss_dssp EEEBCCSCCHHHHHHHHHHHHTTCCSSCBBCSCCCCBSSCCC-CCCEECSSEEEC---
T ss_pred EEecCCcccHHHHHHHHHHHHCCCCCccccCCchhhhHhhcc-CCceeeCCEEecCCc
Confidence 999999999999999999999999988889887666677876 678999999999985
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-64 Score=515.87 Aligned_cols=350 Identities=17% Similarity=0.207 Sum_probs=286.5
Q ss_pred EEeEEEEEEEEeccccceeccC---ceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIAT---SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~---~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
+|++++++++... ..|+.... +.+..| .||+|+|++|++||||++. ++... ..++.+.|.|+|+++
T Consensus 27 ~i~~~~v~pva~~-d~~l~~~~g~h~p~f~R--tiV~v~Td~Gi~G~GE~~g-----~~~~~---~~le~~~p~liG~dp 95 (464)
T 4g8t_A 27 IITEMQVIPVAGH-DSMLLNLSGAHSPYFTR--NIVILKDNSGNTGVGEVPG-----GEKIR---QTLEDAKPLVIGKTL 95 (464)
T ss_dssp BEEEEEEEEEEEE-CCCBEETTEECCSEEEE--EEEEEEETTSCEEEEEEEC-----CHHHH---HHHHHHGGGTTTCBG
T ss_pred EEeEEEEEEecCC-CcccccCCcccCCccce--EEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHHcCCCH
Confidence 8999999999753 22333333 333333 4899999999999999852 33333 234678999999999
Q ss_pred CCHHHHHHHHHhhcCCCcc----------hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CCeeeeceeecC----
Q 015161 124 MALGSVFGVVAGLLPGHQF----------ASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDITIPI---- 187 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~----------~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-g~-~~~i~~~~~i~~---- 187 (412)
.+++.+|+.|++.+.++.. .....|+||||+||||++||.+|+|||+||| |+ +++|++|.+...
T Consensus 96 ~~ie~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V~~y~~~~~~~d~ 175 (464)
T 4g8t_A 96 GEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGDR 175 (464)
T ss_dssp GGHHHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEEEBCEEECCBCCG
T ss_pred HHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeeccCcc
Confidence 9999999999875432210 1134689999999999999999999999999 55 468999876532
Q ss_pred -------------------------CCHHHHHHHHHH-HHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCC
Q 015161 188 -------------------------VSPAEAAELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDAN 240 (412)
Q Consensus 188 -------------------------~~~~~~~~~~~~-~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN 240 (412)
.++++..+++++ +.++||++||+|+| .+.++|+++++++|+++|++.||+|+|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~~~~~~di~~v~avrea~pd~~L~vDaN 255 (464)
T 4g8t_A 176 KKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPN 255 (464)
T ss_dssp GGSCSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECT
T ss_pred cccchhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHhhCCCceEEEECC
Confidence 245666555544 45569999999999 588999999999999988999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
++|++++|+++++.|+++ + .|||||++++|+.++.++.+.+++++++||++||++++..+++++++.+++|++|+|+
T Consensus 256 ~~wt~~~Ai~~~~~le~~-l--~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~d~ 332 (464)
T 4g8t_A 256 GAWSLDEAVKIGKQLKGV-L--AYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLADP 332 (464)
T ss_dssp TCBCHHHHHHHHHHTTTT-C--SCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBCCH
T ss_pred CccCHHHHHHHHHHhhhc-c--ceeecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEeccc
Confidence 999999999999999987 6 4999999999875544443344457899999999999999999999999999999995
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFT 397 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p 397 (412)
++| ++++++++++|+++|+++++|++.+++|++++++|+++++||..+ ++...++ ...+++++++++++||++.+|
T Consensus 333 -~~GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~~~~~~~~~~~~~~~l~~~p~~i~dG~i~vP 411 (464)
T 4g8t_A 333 -HFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIDTHWIWQEGNQRLTKEPFQIKGGLVEVP 411 (464)
T ss_dssp -HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTSCCSBSSCCCEETTEEECC
T ss_pred -cccchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCccccccccccchhHhhcCCCCeeECCEEECC
Confidence 776 999999999999999999999999999999999999999998654 3433222 235678888999999999999
Q ss_pred CCCCcccccCCCCC
Q 015161 398 NARGHGGFLHWDNI 411 (412)
Q Consensus 398 ~~pGlG~~ld~~~~ 411 (412)
++||||+|+|+|+|
T Consensus 412 ~~PGLGvelD~d~l 425 (464)
T 4g8t_A 412 KKPGLGVELDMDQV 425 (464)
T ss_dssp SSSBTCCCBCHHHH
T ss_pred CCCCCceEECHHHH
Confidence 99999999999976
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-64 Score=505.81 Aligned_cols=346 Identities=22% Similarity=0.281 Sum_probs=292.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|+|||++|+++++++|++.||+++.++++.++.++|+|+|++|++||||+.+.. .+..+.+.+...+++ +.|.++|++
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~g-~~~~~~~~~~~~i~~~l~p~l~G~d 79 (389)
T 2oz8_A 1 MSLSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLF-NPLPDQQEIESVFEHEVWPSLKGNR 79 (389)
T ss_dssp --CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEESS-SCCCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CCCEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEeccCC-CccccHHHHHHHHHHHHHHHHcCCC
Confidence 569999999999999999999999999999999999999999999999998631 110012233444554 789999998
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCC--CHHHHHHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKY 200 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~--~~~~~~~~~~~~ 200 (412)
+.++ +..+.....+..-....+|++||||||||+.||..|+|||+||||.++++|+|.+++.. +++++.+.++++
T Consensus 80 ~~~~---~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~~~vp~y~~~~~~~~~~~~~~~~a~~~ 156 (389)
T 2oz8_A 80 AIAL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHA 156 (389)
T ss_dssp HHHH---TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHH
T ss_pred HHHH---HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCceEEEEeCCCcCCCHHHHHHHHHHH
Confidence 7654 21111001111000011379999999999999999999999999988899999887653 899999999999
Q ss_pred HHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc--CCCCCceeecCCCCCCHHH
Q 015161 201 RKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE--MGVTPVLFEQPVHRDDWEG 276 (412)
Q Consensus 201 ~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~--~~l~~~~iEeP~~~~d~~~ 276 (412)
+++||+++|+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++++|+++
T Consensus 157 ~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i--~~iEqP~~~~~~~~ 234 (389)
T 2oz8_A 157 ASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDL--LWVEDPILRHDHDG 234 (389)
T ss_dssp HHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCC--SEEESCBCTTCHHH
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCc--eEEeCCCCCcCHHH
Confidence 99999999999996 899999999999997 7899999999999999999999999999 876 59999999999999
Q ss_pred HHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEc-cCcchHHHH
Q 015161 277 LGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG-GMVETRLAM 354 (412)
Q Consensus 277 ~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~-~~~es~i~~ 354 (412)
+++|++ ++ ++||++||++ +.++++++++.+++|++|+| -|++++++++++|+++|+++++| ++.+
T Consensus 235 ~~~l~~----~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik---GGit~a~~i~~~A~~~gi~~~~~~~~~e----- 301 (389)
T 2oz8_A 235 LRTLRH----AVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH---GQVTDVMRIGWLAAELGIPISIGNTFLE----- 301 (389)
T ss_dssp HHHHHH----HCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC---SCHHHHHHHHHHHHHHTCCEEECCCGGG-----
T ss_pred HHHHHh----hCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC---cCHHHHHHHHHHHHHcCCeEeecccHHH-----
Confidence 999975 57 8999999999 99999999999999999999 23999999999999999999999 7765
Q ss_pred HHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 355 GFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 355 ~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|++++++|+.++|+. ++ +.++++.++++++||++.+|++||||+++|++.+
T Consensus 302 -a~lhlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 355 (389)
T 2oz8_A 302 -AGVHMAVALPEVEWLEYS-FQ-NFDHLVEQPIEIRDGYAYAPDRPGHGLVLSEKAR 355 (389)
T ss_dssp -TTHHHHHHSTTEEEEEEC-CC-SCGGGBSSCCCEETTEEECCSSSBTSCCBCHHHH
T ss_pred -HHHHHHhcCCCCceeecc-hH-HHhhhccCCceEECCEEECCCCCcCCCccCHHHH
Confidence 788999999999988876 32 3567778888999999999999999999999865
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=509.68 Aligned_cols=334 Identities=20% Similarity=0.226 Sum_probs=296.2
Q ss_pred eeEEeEEEEEEEEeccccceeccC-ceeee--eeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIAT-SRLDQ--VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~-~~~~~--~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (412)
.|||++|+++.+++|++.||+++. +.++. ++.++|+|+|+ |++||||+. . .++.++|.|+|+
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~--g------------~i~~l~p~l~G~ 75 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSI--H------------MTPEWAEDVIGR 75 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECC--S------------CCHHHHHTTTTC
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEecc--c------------HHHHHHHHhcCC
Confidence 599999999999999999999995 55667 88999999999 999999986 1 123578999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC----C--CCeeeece---eecCCCH--
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG----V--SNTITTDI---TIPIVSP-- 190 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg----~--~~~i~~~~---~i~~~~~-- 190 (412)
++.+++.+| .+. .. +|++|||+||||+.||.+|+|||+|||| . ++++|+|. +++..++
T Consensus 76 d~~~~~~~~-------~~~-~~---~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~vp~~~s~~~~~~~~~~~ 144 (392)
T 3p3b_A 76 RLLDLFDDR-------GRL-RE---AYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLAD 144 (392)
T ss_dssp BGGGGBCTT-------SCB-CG---GGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEEEEEEEEEECBTTTTCCS
T ss_pred CHHHHHHHH-------hHH-HH---HHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCCcceeEeecccCCCCccc
Confidence 988877665 221 12 3799999999999999999999999999 6 46899985 4555678
Q ss_pred -----HHHHHHHHHHHHcCCCEEeEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 191 -----AEAAELASKYRKQGFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 191 -----~~~~~~~~~~~~~Gf~~~KiKvG~---------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
+++.+.+++++++||+++|+|+|. +++.|+++|+++|++ ++++.|++|+|++|++++|+++++.|
T Consensus 145 ~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l 224 (392)
T 3p3b_A 145 ERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAAL 224 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999999995 678999999999996 89999999999999999999999999
Q ss_pred HcCCCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHH
Q 015161 256 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 334 (412)
Q Consensus 256 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~ 334 (412)
+++++ .|||||++ +|++++++|++.+++ .+++||++|| ++++++++++++.+++|++|+|++++|++++++++++
T Consensus 225 ~~~~i--~~iE~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~Git~~~~i~~~ 300 (392)
T 3p3b_A 225 SDVNL--YWLEEAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEK 300 (392)
T ss_dssp TTSCE--EEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHH
T ss_pred HhcCC--CEEecCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccccCHHHHHHHHHH
Confidence 99987 59999999 999999999852110 0689999999 9999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 335 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 335 A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|+++|+++++| +.||+++.++++|++++++|+.++|++.+ +.+|++.++++++||++.+|++||||+++|++.+
T Consensus 301 A~~~gi~~~~h-~~es~i~~~a~l~laa~~~~~~~~e~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 374 (392)
T 3p3b_A 301 LDAHGLRSAPH-CYGNAYGIYASGHLSAAVRNFEFVEYDDI--TIEGMDVSGYRIENGEIHVPATPGFGIVFDDELV 374 (392)
T ss_dssp HHHTTCEECCB-CCSCTHHHHHHHHHGGGCTTBCCEEECCE--EETTEECTTCEEETTEEEECCSSBTSCEECHHHH
T ss_pred HHHcCCEEEec-CCCCHHHHHHHHHHHHhCCCCceeeccch--hhHhhccCCCcccCCEEECCCCCccceeECHHHH
Confidence 99999999999 88999999999999999999999998877 4678888889999999999999999999999865
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-64 Score=506.86 Aligned_cols=341 Identities=18% Similarity=0.240 Sum_probs=294.6
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
+.|||++|+++.+. |. . ..++|+|+|++| +||||+ +. + .+...+...++.+.|.|+|+++
T Consensus 4 ~~MkI~~i~~~~~~-~~-~------------~~v~V~v~td~G-~G~Ge~-~~-g---~~~~~~~~~i~~l~p~liG~d~ 63 (410)
T 2qq6_A 4 SAPRITRVETAAIR-AV-G------------PSVLVRVWAGDE-HGLGEC-YP-S---APAAGIHHIVMNMEEQLLGEDP 63 (410)
T ss_dssp CCCCCCEEEEEEEC-CC--------------CEEEEEEEETTE-EEEEEE-CC-C---SCHHHHHHHHHTTHHHHTTCCT
T ss_pred CCceEeEEEEEEEC-CC-C------------CEEEEEEEECCc-EEEEEe-cC-C---CChHHHHHHHHHHHHHhCCCCc
Confidence 34899999999996 42 1 148999999999 999999 42 1 2334444455668999999999
Q ss_pred CCHHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecC--C----------
Q 015161 124 MALGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPI--V---------- 188 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~--~---------- 188 (412)
.+++.+|+.|.+...+ +......+|++||||||||+.||.+|+|||+||||. ++++|+|.++++ .
T Consensus 64 ~~~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~vp~y~~~~~g~~~h~~~~~~~~ 143 (410)
T 2qq6_A 64 RDVERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGG 143 (410)
T ss_dssp TCHHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCSCSEEEEEEECCCSEECTTCCEEECC
T ss_pred cHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCccCceeEEEecccccccccccccccc
Confidence 9999999999865422 211112469999999999999999999999999996 568999987642 3
Q ss_pred -----CHHHHHHHHHHHHHcCCCEEeEec----CC-------------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 015161 189 -----SPAEAAELASKYRKQGFTTLKLKV----GK-------------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKP 245 (412)
Q Consensus 189 -----~~~~~~~~~~~~~~~Gf~~~KiKv----G~-------------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~ 245 (412)
+++++.+.+++++++||+.+|+|+ |. +++.|+++|++||++ ++++.|++|+|++|++
T Consensus 144 ~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 144 LFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp TTCSTHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 788899999999999999999999 64 457899999999996 8999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++|+++++.|+++++ .|||||++++|++++++|++ ++++||++||++++.++++++++.+++|++|+|++++|
T Consensus 224 ~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 297 (410)
T 2qq6_A 224 PSSIRFARAMEPFGL--LWLEEPTPPENLDALAEVRR----STSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGG 297 (410)
T ss_dssp HHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTH
T ss_pred HHHHHHHHHHhhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCC
Confidence 999999999999997 49999999999999999974 67899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC-cccccCCCC--CceeeeCcEEeeCCCCC
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVL--DGYEVSGAVYKFTNARG 401 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~--~~~~~~~G~~~~p~~pG 401 (412)
++++++++++|+++|+++++|++. |+|++++++||++++||+.++|+... ..+.+|++. ++++++||++.+|++||
T Consensus 298 ite~~~ia~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~~G~i~~p~~PG 376 (410)
T 2qq6_A 298 LAEAKRIANLAELDYIPFAPHNVS-SPVGTVAAAHVCAAVSNFAVLEWHAIDMPHWEDFVRYPGGPVIREGHIELTEEPG 376 (410)
T ss_dssp HHHHHHHHHHHHTTTCCBCCBCCS-CHHHHHHHHHHHHSCTTBCCEEECCTTCTTGGGGBCCSSSSSEETTEEECCSSSG
T ss_pred HHHHHHHHHHHHHcCCeEeecCCC-cHHHHHHHHHHHHhCCCceeeecccccchhhhhhcccCCCceeeCCEEECCCCCC
Confidence 999999999999999999999995 99999999999999999988886311 113567887 88899999999999999
Q ss_pred cccccCCCCC
Q 015161 402 HGGFLHWDNI 411 (412)
Q Consensus 402 lG~~ld~~~~ 411 (412)
||+++|++.+
T Consensus 377 lGv~~d~~~l 386 (410)
T 2qq6_A 377 LGLELDEEAA 386 (410)
T ss_dssp GGCCBCHHHH
T ss_pred CCceeCHHHH
Confidence 9999999865
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-64 Score=495.07 Aligned_cols=323 Identities=17% Similarity=0.171 Sum_probs=288.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc--cCcccHHHHHHHHHHHhHHHcCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKASEACEVLKESPA 123 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~~~e~~~~~~~~~~~~~~~l~g~~~ 123 (412)
|||++|+++.+++|++.||+++.++++.++.++|||+|++|++||||+.+.+. +++|+...+...+++..|.++|+++
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~G~d~ 81 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKSF 81 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHTTCCB
T ss_pred cEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999999999999999999999999999999999987653 7778877666667765699999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceee-cCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI-PIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i-~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+|+.|... .++ ..|++|||+||||++||..|+ ++|+|+++ +..+ +++ +++++
T Consensus 82 ~~~~~l~~~l~~~-~g~-----~~a~said~ALwDl~gk~~g~-----------~v~~~~~~~g~~~-e~~----~~~~~ 139 (342)
T 2okt_A 82 ETYEAALKLVDSL-ENT-----PAARATIVMALYQMFHVLPSF-----------SVAYGATASGLSN-KQL----ESLKA 139 (342)
T ss_dssp CSHHHHHHTTGGG-TTC-----HHHHHHHHHHHHHTTCCCCCE-----------EEECEEEESSCCH-HHH----HHHHH
T ss_pred CCHHHHHHHHHHh-hcC-----hHHHHHHHHHHHHHhhhhhCc-----------eEeeeEEEecCCH-HHH----HHHHH
Confidence 9999999988654 332 248999999999999999998 78999887 6644 444 66778
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~ 282 (412)
+||++||+|+| ++ |+++|++||++.|++.|++|+|++|++++| +++++|+++++ .|||||++++|++++++ .
T Consensus 140 ~G~~~~KiKvg--~~-d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~-~- 211 (342)
T 2okt_A 140 TKPTRIKLKWT--PQ-IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQV--LYIEEPFKDISMLDEVA-D- 211 (342)
T ss_dssp HCCSEEEEECC--TT-HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCE--EEEECCCSSGGGGGGSC-T-
T ss_pred cCCcEEEEEeC--HH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCCCccHHHHHH-h-
Confidence 99999999999 68 999999999977999999999999999999 99999999987 59999999999999886 2
Q ss_pred HhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHH
Q 015161 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 283 ~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hla 361 (412)
++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|++++++|++
T Consensus 212 ----~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 287 (342)
T 2okt_A 212 ----GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLA 287 (342)
T ss_dssp ----TSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHH
T ss_pred ----cCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcCCcccHHHHHHHHHHH
Confidence 56899999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred ccC--CCCceecc-cCCcccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 362 AGL--GCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 362 aa~--~~~~~~e~-~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+++ ++ ++ +++..+.+|++.++++++||++.+ +.||+|+++-
T Consensus 288 a~~~~~~----~l~~~~~~~~~d~~~~~~~~~~G~~~~-~~PGlg~~~~ 331 (342)
T 2okt_A 288 RKGDYPG----DVTPAGYYFEQDVVAHSGILKEGRLEF-RPPLVDITQL 331 (342)
T ss_dssp TTSSSCC----BCCCTTSSCSSCSSTTTTEEETTEEEE-CCCCCCGGGC
T ss_pred Hhccccc----ccCCchhhhhccccCCCceEECCEEEe-CcccCCHHHc
Confidence 987 43 23 445445788888889999999999 8899999874
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-63 Score=497.66 Aligned_cols=345 Identities=17% Similarity=0.168 Sum_probs=286.9
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEEC---CCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHc
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELS---NGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLK 119 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~---~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~ 119 (412)
|+|||++|+ ++++|++.||+++.++++.++.++|+|+|+ +|++||||+.+ +++.+++... ++ .+.|.|+
T Consensus 4 m~mkI~~i~--~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~--~~~~~~~~~~---i~~~l~~~l~ 76 (392)
T 1tzz_A 4 MSVRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFN--SNGRYGQGGL---IRERFASRIL 76 (392)
T ss_dssp --CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEEC--CTTSCCCHHH---HHHTHHHHHH
T ss_pred CCcEEeEEE--EEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecC--CCchHHHHHH---HHHHHHHHHc
Confidence 669999999 788999999999999999999999999999 99999999986 3444544333 33 3789999
Q ss_pred CCCC----------CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC----C-CCCeeeecee
Q 015161 120 ESPA----------MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG----G-VSNTITTDIT 184 (412)
Q Consensus 120 g~~~----------~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG----g-~~~~i~~~~~ 184 (412)
|+++ .+++.+|+.|.+...........+|++||||||||+.||..|+|||+||| | .++++|+|.+
T Consensus 77 G~d~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~~~~v~~y~~ 156 (392)
T 1tzz_A 77 EADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAA 156 (392)
T ss_dssp TSCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCCCCEEEEEEE
T ss_pred CCCchhhhcccccccCHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCcCCCeeEEEe
Confidence 9999 99999999997643211111124699999999999999999999999999 8 5678999876
Q ss_pred ecC----CCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcC
Q 015161 185 IPI----VSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM 258 (412)
Q Consensus 185 i~~----~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 258 (412)
.+. .+++++.+.+++++++||+++|+|+|. +++.|+++|++||++ ++++.|++|+|++|+.++|+++++.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 236 (392)
T 1tzz_A 157 GGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDY 236 (392)
T ss_dssp CCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTS
T ss_pred CCcccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 433 378899999999999999999999995 889999999999996 89999999999999999999999999999
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC----CCCEEEecCCCCc-HHHHHHHHH
Q 015161 259 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN----LADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 259 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~----a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+ ++|++|+|++++| +++++++++
T Consensus 237 ~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~ 310 (392)
T 1tzz_A 237 PL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLE 310 (392)
T ss_dssp CC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHH
T ss_pred CC--CeecCCCChhhHHHHHHHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHH
Confidence 97 49999999999999999874 6789999999999999999999999 9999999999998 999999999
Q ss_pred HHHHcCCc---EEEccCcchHHHHHHHHHHHccCCCC---ceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 334 VVRASGLN---LMIGGMVETRLAMGFAGHLSAGLGCF---KFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 334 ~A~~~gi~---~~~~~~~es~i~~~a~~hlaaa~~~~---~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+|+++|++ +++|+. + .+.+|+++++++. .+.|++.++ .+++. +++++||++.+|++||||+++|
T Consensus 311 ~A~~~gi~~~~~~~~~~-----~-~~~~hl~aa~~~~~~~~~~~~~~~~---~~~~~-~~~~~~G~~~~p~~PGlGv~~d 380 (392)
T 1tzz_A 311 VLKTHGWSPSRCIPHGG-----H-QMSLNIAAGLGLGGNESYPDLFQPY---GGFPD-GVRVENGHITMPDLPGIGFEGK 380 (392)
T ss_dssp HHHHTTCCGGGBCCSCC-----B-HHHHHHHHHHTCSCEEECTTCSTTT---BSCST-TCCCBTTEEECCCCSBTSGGGC
T ss_pred HHHHCCCCCceEeecHH-----H-HHHHHHHHhCCCccccccccccchH---HhccC-CcceeCCEEECCCCCccCCccC
Confidence 99999999 999941 1 2358999998875 345555542 34555 7889999999999999999999
Q ss_pred CCCC
Q 015161 408 WDNI 411 (412)
Q Consensus 408 ~~~~ 411 (412)
++.+
T Consensus 381 ~~~~ 384 (392)
T 1tzz_A 381 SDLY 384 (392)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-64 Score=506.90 Aligned_cols=351 Identities=18% Similarity=0.268 Sum_probs=298.8
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHH--HHHHHHH-HHhHHHcC
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ--TAMVKAS-EACEVLKE 120 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~--~~~~~~~-~~~~~l~g 120 (412)
|.|||++|+++++++|++.||+++. ++.++|+|+|+ |++||||+.+.+. ..++.. .+...++ .++|.|+|
T Consensus 1 m~mkI~~i~~~~~~~pl~~p~~~s~-----~~~~~V~v~td-G~~G~GE~~~~~~-~~~~~~~~~~~~~i~~~l~~~l~G 73 (401)
T 2hzg_A 1 MSLKIDAVDLFYLSMPEVTDAADGS-----QDALLVRVAAG-GHIGWGECEAAPL-PSIAAFVCPKSHGVCRPVSDSVLG 73 (401)
T ss_dssp -CCBEEEEEEEEEECSSCCSSSCGG-----GEEEEEEEEET-TEEEEEEECSCHH-HHHHHHHCCCSBTTBCCGGGGTTT
T ss_pred CCCEEEEEEEEEEeccCCCcccccc-----ceEEEEEEEeC-CcEEEEeeecccC-CcccchhHHHHHHHHHHHHHHhCC
Confidence 4599999999999999999999886 67899999999 9999999987532 123221 1122344 37899999
Q ss_pred CCCCCHHH-HHHHHHhhc-CCCcchhhhH--HHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeeceeec-CCCHHHHH
Q 015161 121 SPAMALGS-VFGVVAGLL-PGHQFASQLK--VRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIP-IVSPAEAA 194 (412)
Q Consensus 121 ~~~~~~~~-~~~~l~~~~-~g~~~~~~~~--a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~-~~~~~~~~ 194 (412)
+ +.+++. +++.+...- .|... ..+ |++||||||||+.||.+|+|||+||||.. +++|+|.++. ..+++++.
T Consensus 74 ~-~~~~~~~l~~~~~~~~~~g~~~--~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~ 150 (401)
T 2hzg_A 74 Q-RLDGPDDIARIAALVGYNSMDL--LQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETL 150 (401)
T ss_dssp C-BCSSHHHHHHHHHHHHHHTTTC--TTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHH
T ss_pred C-CCCHHHHHHHHHHhhccCCccc--hhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHH
Confidence 9 888752 222221110 12001 125 89999999999999999999999999975 6899986544 66899999
Q ss_pred HHHHHHHHcCCCEEeEe---cCCCh-hHHHHHHHHHHHh-CCCcEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCceeec
Q 015161 195 ELASKYRKQGFTTLKLK---VGKNL-KEDIEVLRAIRAV-HPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQ 267 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiK---vG~~~-~~D~~~v~avr~~-~~~~~l~vDaN~~~--~~~~A~~~~~~l~~~~l~~~~iEe 267 (412)
+.+++++++||+.+|+| +|.++ +.|+++|++||++ ++++.|++|+|++| +.++|+++++.|+++++. ||||
T Consensus 151 ~~a~~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~--~iEq 228 (401)
T 2hzg_A 151 ERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVL--WLEE 228 (401)
T ss_dssp HHHHHHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCS--EEEC
T ss_pred HHHHHHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCC--EEEC
Confidence 99999999999999999 99888 9999999999997 79999999999999 999999999999999974 9999
Q ss_pred CCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEc
Q 015161 268 PVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~ 345 (412)
|++++|++++++|+ + ++++||++||++++.++++++++.+++|++++|++++| ++++++++++|+++|+++++|
T Consensus 229 P~~~~d~~~~~~l~----~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h 304 (401)
T 2hzg_A 229 PFDAGALAAHAALA----GRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNH 304 (401)
T ss_dssp CSCTTCHHHHHHHH----TTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCccCHHHHHHHH----hhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecC
Confidence 99999999999986 4 57899999999999999999999999999999999998 999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHccCCCCceecccCCc-ccccCCCCCceeee-CcEEeeCCCCCcccccCCCCC
Q 015161 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVS-GAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 346 ~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~-~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+.||+++.++++|++++++|+.++|++... .+.+|++.++++++ ||++.+|++||||+++|++.+
T Consensus 305 -~~es~i~~~a~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l 371 (401)
T 2hzg_A 305 -TFTSHLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAEGLIRAPEAPGLGLQVAASAL 371 (401)
T ss_dssp -CCSCHHHHHHHHGGGTTCTTCCEEEEESSCCHHHHHTBSSCCCCCTTSCBCSCSSSBTSCCBCHHHH
T ss_pred -CCCcHHHHHHHHHHHHhCCCceeeeccCCcchHHHHhccCCceeccCCeEECCCCCcCCceECHHHH
Confidence 889999999999999999999988874221 13577888888999 999999999999999999865
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-62 Score=489.09 Aligned_cols=319 Identities=18% Similarity=0.232 Sum_probs=266.7
Q ss_pred ceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCCHHHHHHHHHhhc--CC
Q 015161 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PG 139 (412)
Q Consensus 63 pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g 139 (412)
++++|.| .+.++.++|||+|++|++||||+.. ++... ..+ +.+.|.|+|+++.+++.+|+.|++.. .+
T Consensus 48 ~~~ts~g-~~~~~~v~V~v~td~G~~G~Ge~~~-----g~~~~---~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~~~g 118 (404)
T 3ekg_A 48 QSRRSFG-INVLGTLVVEIEASDGNVGFAVTTG-----GEPAA---YIVEKHLARFLEGARVTDIERIWDQMYNSTLYYG 118 (404)
T ss_dssp SCTGGGT-TTSSCEEEEEEEETTSCEEEEEEEC-----HHHHH---HHHHHTTHHHHTTSBTTCHHHHHHHHHHHHGGGC
T ss_pred ccccccC-cccccEEEEEEEECCCCEEEEeCCC-----cHHHH---HHHHHHHHHHHCCCCcccHHHHHHHHHHHhhhcC
Confidence 3455555 4567899999999999999999863 22221 223 35889999999999999999998642 22
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----
Q 015161 140 HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK---- 214 (412)
Q Consensus 140 ~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---- 214 (412)
... ....|+|||||||||++||.+|+|||+||||. ++++|+|.+. . +++ .++++||+++|+|++.
T Consensus 119 ~~G-~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~g-~-~~~-------~~~~~Gf~~~K~Kv~~g~~~ 188 (404)
T 3ekg_A 119 RKG-LVINTISGVDLALWDLLGKVRREPVHQLLGGAVRDELQFYATG-A-RPD-------LAQKMGFIGGKMPLHHGPSE 188 (404)
T ss_dssp SST-HHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEEEEES-S-CHH-------HHHHTTCSEEEEECCCCGGG
T ss_pred CCc-chHHHHHHHHHHHHHHHHHHhCCCHHHHcCCCCCCeeEEecCC-C-CHH-------HHHHcCCCEEEEecCCCCcc
Confidence 211 13468999999999999999999999999996 5789999763 2 333 2457899999999974
Q ss_pred ---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC
Q 015161 215 ---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 215 ---~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
++++|+++|+++|++ ||++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++. ..+.+
T Consensus 189 g~~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l--~~iEeP~~~~d~~~~a~l~~~--~~~pi 264 (404)
T 3ekg_A 189 GEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGL--KWIEEALPPDDYWGYAELRRN--APTGM 264 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHHH--SCTTC
T ss_pred ccccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCC--cEEecCCCcccHHHHHHHHHh--cCCCe
Confidence 357899999999997 7999999999999999999999999999997 499999999999999999862 12234
Q ss_pred eEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce
Q 015161 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369 (412)
Q Consensus 291 pIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~ 369 (412)
||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. .+++|+++++||+.+
T Consensus 265 ~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGitea~kia~lA~a~gv~v~~h~~~------~a~~hl~aa~pn~~~ 338 (404)
T 3ekg_A 265 MVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVTELLKISALADAHNALVVPHGSS------VYSYHFVATRQNSPF 338 (404)
T ss_dssp EEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEECCCCCT------HHHHHHHTTCTTCCS
T ss_pred EEEecCccCCHHHHHHHHHcCCCCeEecChhhcCCccHHHHHHHHHHHcCCEEEecCcH------HHHHHHHHhCCCcce
Confidence 5999999999999999999999999999999998 999999999999999999999962 379999999999999
Q ss_pred ecccC--C-----cccccCCCCCceeeeCcEEeeC--CCCCcccccCCCC
Q 015161 370 IDLDT--P-----LLLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDN 410 (412)
Q Consensus 370 ~e~~~--p-----~~~~~d~~~~~~~~~~G~~~~p--~~pGlG~~ld~~~ 410 (412)
+|+.. + ..+.++++.+++.++||++.+| ++||||+++|++.
T Consensus 339 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~dG~i~vP~~~~PGLGveld~~~ 388 (404)
T 3ekg_A 339 AEFLMMAPKADQVVPMFHPQLLGEPVPENGRMRLSRLDQPGFGVTLNPEC 388 (404)
T ss_dssp EEEECCSTTSCSCCCTTTTTEETCCCCBTTEEEGGGCCSSBTSCEECTTS
T ss_pred eeeccccccccccchhhhhcccCCCcccCCEEECCCCCCCcccceECccc
Confidence 88642 1 1234566667777899999999 9999999999985
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=498.24 Aligned_cols=335 Identities=17% Similarity=0.198 Sum_probs=279.4
Q ss_pred EEeEEEEEEE-----------------------Eeccccce-----eccCceeeeeeEEEEEEEECCCcEEEEEeccCCc
Q 015161 47 DVQRAENRPL-----------------------NVPLIAPF-----TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH 98 (412)
Q Consensus 47 kI~~i~~~~~-----------------------~~pl~~pf-----~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~ 98 (412)
||++|+.|.+ +.||++++ ++|.|. +.++.++|||+|++|++||||+...
T Consensus 10 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ts~g~-~~~~~vlV~V~tddGi~G~Ge~~~~-- 86 (455)
T 3fxg_A 10 KIKAIRSFIIGGVGSGGDYHNVKGGHWLIDSDISTPASKWEQYKKSRTSWGI-NVLGSFLVEIEATDGTVGFATGFGG-- 86 (455)
T ss_dssp CEEEEEEEEECSSSCSSCTTCCCTTCHHHHSCCCCTTTTSGGGTSCTTTTTT-TSSCEEEEEEEETTSCEEEEEEECH--
T ss_pred cceeEEeEEeecccCCCCCCCCCCCcccccccccCccccccccccccccccc-ccceEEEEEEEECCCCEEEEeCcCC--
Confidence 6888888776 26787776 444443 3478899999999999999998532
Q ss_pred cCcccHHHHHHHH-HHHhHHHcCCCCCCHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC
Q 015161 99 VTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175 (412)
Q Consensus 99 ~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~ 175 (412)
+.. ...+ +.+.|.|+|+|+.+++.+|+.|++.. .+... ....|+|||||||||++||.+|+|||+||||.
T Consensus 87 ---~~~---~~~i~~~lap~LiG~dp~~ie~i~~~m~~~~~~~g~~G-~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~ 159 (455)
T 3fxg_A 87 ---PPA---CWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKG-LPIAVISVIDLALWDLLGKVRNEPVYRLIGGA 159 (455)
T ss_dssp ---HHH---HHHHHHTTHHHHTTCCTTCHHHHHHHHHHHTTTTCSSS-HHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCC
T ss_pred ---HHH---HHHHHHHHHHHHCCCCcchHHHHHHHHHHhhhhccCCc-chHHHHHHHHHHHHHHHHHHcCCCHHHHhCCc
Confidence 221 1223 45889999999999999999998753 22221 12358999999999999999999999999997
Q ss_pred -CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHH
Q 015161 176 -SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQ 246 (412)
Q Consensus 176 -~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~ 246 (412)
+++||+|.+. .+++ .++++||+++|+|++. ++++|+++|+++|++ ||++.|++|+|++|+++
T Consensus 160 ~rd~vp~y~~g--~~~~-------~~~~~Gf~~~KlKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~ 230 (455)
T 3fxg_A 160 TKERLDFYCTG--PEPT-------AAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVS 230 (455)
T ss_dssp SCSEEEEEEES--SCHH-------HHHHHTCSCEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHH
T ss_pred cCCeeEEeecC--CCHH-------HHHHcCCCEEEEcCCCCcccccccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHH
Confidence 5789999763 2332 2457899999999963 357899999999997 79999999999999999
Q ss_pred HHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 247 ~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
+|++++++|+++++ .|||||++++|++++++|++ ++ .+||++||++++..+++++++.+++|++|+|++++|
T Consensus 231 ~Ai~~~~~Le~~~l--~~iEEPl~~dd~~~la~L~~----~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GG 304 (455)
T 3fxg_A 231 YTIELVKACLDLNI--NWWEECLSPDDTDGFALIKR----AHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGG 304 (455)
T ss_dssp HHHHHHHHTGGGCC--SEEECCSCGGGGGGHHHHHH----HCTTSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSC
T ss_pred HHHHHHHhcccCCc--ceecCCCCcchHHHHHHHHH----hCCCCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCC
Confidence 99999999999997 49999999999999999975 34 589999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC--Cc-----ccccCCCCCceeeeCcEEeeC
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-----LLSEDPVLDGYEVSGAVYKFT 397 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~--p~-----~~~~d~~~~~~~~~~G~~~~p 397 (412)
++++++++++|+++|+++++|++. .+++||++++||+.++|+.. +. .+..+++.+.+.++||++.+|
T Consensus 305 Itea~kIa~lA~a~Gv~v~~H~~~------~aslHlaaa~pn~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~dG~i~vp 378 (455)
T 3fxg_A 305 LTELLKVAALAAAYDVPVVPHASG------PYSYHFQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKGYLTTA 378 (455)
T ss_dssp HHHHHHHHHHHHTTTCCBCCCSCT------HHHHHHHTTCTTCCCEEEECCSTTSSSCCCTTGGGBSCCCCCTTSEEETG
T ss_pred HHHHHHHHHHHHHcCCEEEecchH------HHHHHHHHhCCCCceEeecccccccccccchhcccccCCCeeeCCEEeCC
Confidence 999999999999999999999973 37899999999999988642 11 123455666677899999999
Q ss_pred --CCCCcccccCCCCCC
Q 015161 398 --NARGHGGFLHWDNIA 412 (412)
Q Consensus 398 --~~pGlG~~ld~~~~~ 412 (412)
++||||+|+|++.++
T Consensus 379 ~~d~PGLGvelde~~~~ 395 (455)
T 3fxg_A 379 DLDKPGFGLTINPAARA 395 (455)
T ss_dssp GGCSSBTCCCBCHHHHT
T ss_pred CCCCCccCcccCHHHHH
Confidence 999999999998763
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-61 Score=471.83 Aligned_cols=302 Identities=18% Similarity=0.233 Sum_probs=256.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||+ ++++++|++.||+++ ++++.++.++|||+|++|++||||+.+.+++++|+....+ + +.+
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~l---~---~~l------- 64 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEEQL---S---DLR------- 64 (330)
T ss_dssp -CEE---EEEEEECBC-----------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHHHH---H---HHH-------
T ss_pred cEEE---EEEEEeecCCCeEee-eEEEEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHHHH---H---HHH-------
Confidence 7888 889999999999999 9899999999999999999999999987777788765422 1 222
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeec-C--CCHHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP-I--VSPAEAAELASKYRK 202 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~-~--~~~~~~~~~~~~~~~ 202 (412)
|. ... ..|++|||+||||++||..|+|||+ || +++|+|++++ . .+++++. ++++
T Consensus 65 -------l~-----~~~---~~a~said~AlwDl~gk~~g~Pl~~--Gg--~~v~~~~~~~~~~~~~~~~~~----~~~~ 121 (330)
T 3caw_A 65 -------MG-----RMT---TQIEQSIWLARRDALLRKEKKHVFD--GG--EKIKNNYLLSHFQDLKPGFLD----GLKN 121 (330)
T ss_dssp -------HT-----CCC---HHHHHHHHHHHHHHHHHHTTCBTTT--TS--CCCCBCEEECTTSCCCTTHHH----HHHH
T ss_pred -------hc-----cch---HHHHHHHHHHHHHHHHHHcCCcccc--CC--CceEEEEEecCCCCCCHHHHH----HHHH
Confidence 11 111 2489999999999999999999999 87 8899999998 6 6887765 5667
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCC-CHHHHH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRD-DWEGLG 278 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~-d~~~~~ 278 (412)
+||++||+|+|.++++|+++|+++|+ |++.|++|+|++|++++|++++++|++ +++ .|||||++++ |++++
T Consensus 122 ~G~~~~KiKvg~~~~~d~~~v~avr~--~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l--~~iEqP~~~~~d~~~~- 196 (330)
T 3caw_A 122 EGYNTVKVKMGRDLQKEADMLTHIAA--SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI--EYVEDPFPFDFHAWGE- 196 (330)
T ss_dssp HTCCEEEEECSSCHHHHHHHHHHHHH--TTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGE--EEEECCSSCCHHHHHH-
T ss_pred cCCcEEEEecCCCHHHHHHHHHHHhC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCc--eEEECCCCCCccHHHH-
Confidence 89999999999999999999999999 999999999999999999999999999 887 5999999999 99888
Q ss_pred HhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
| + ++ +||++||+ +..+++++++.+++|++|+|++++|++ +++++|+++|+++++||++||+|+.++++
T Consensus 197 -l----~-~~-iPIa~dEs--~~~~~~~~i~~~a~d~v~~k~~~~Gi~---~i~~~A~~~gi~~~~~~~~es~ig~aa~~ 264 (330)
T 3caw_A 197 -A----R-KL-AKIALDNQ--YDKVPWGKIASAPFDVIVIKPAKTDVD---KAVAQCQKWNLKLAVTSYMDHPVGVVHAV 264 (330)
T ss_dssp -H----T-TT-SCEEESTT--GGGCCTTTCSSCSCSEEEECTTTSCHH---HHHHHHHHTTCEEEEBCCSCCHHHHHHHH
T ss_pred -H----H-hc-CcEEeCCC--CHHHHHHHHHcCCCCEEEechhhccHH---HHHHHHHHcCCcEEEeCccCcHHHHHHHH
Confidence 4 3 57 99999999 999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHc----cCCCCce--ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccc
Q 015161 359 HLSA----GLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 405 (412)
Q Consensus 359 hlaa----a~~~~~~--~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ 405 (412)
|+++ ++||+.. .|++++++ .+|++.++++++||++.+|++||||++
T Consensus 265 hlaa~~~~a~~~~~~~~~dl~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlGv~ 316 (330)
T 3caw_A 265 GVAMELKDKYGDMILESGCLTHRLY-QMDSFAAELSTQGPYLLKNKGTGVGFD 316 (330)
T ss_dssp HHHHHHHHHHGGGBCCBBCCCGGGB-CCCTTGGGCCEETTEECCCSSSBTSCH
T ss_pred HHHccchhcCCCcccccccCCchhh-hcccccCCceeECCEEECCCCCCCCHH
Confidence 9999 8887433 34655443 678888888999999999999999998
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=477.51 Aligned_cols=352 Identities=20% Similarity=0.252 Sum_probs=283.0
Q ss_pred eeEEeEEEEEEEEeccccceeccCc--eeeeeeEEEEEEEECC--CcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN--GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~--~~~~~~~~lV~v~t~~--G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
+|||++|+++.+++|++.||..+.+ +...++.++|+|+|++ |++||||+.+.+ .+.+.+. ..++.+.|.|+|
T Consensus 1 mmkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g-~~~~~v~---~~i~~l~~~liG 76 (441)
T 2hxt_A 1 MRTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIG-RGNDVQT---AAVAALAEHVVG 76 (441)
T ss_dssp -CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEECS-TTHHHHH---HHHHTTHHHHTT
T ss_pred CCcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCCC-CCcHHHH---HHHHHHHHHHcC
Confidence 3899999999999999999866543 2233578999999998 999999998643 2334333 334568999999
Q ss_pred CCCCCHHH----HHHHHHhh----cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC----------------
Q 015161 121 SPAMALGS----VFGVVAGL----LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS---------------- 176 (412)
Q Consensus 121 ~~~~~~~~----~~~~l~~~----~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~---------------- 176 (412)
+++.+++. +|+.|... +.+.......+|++||||||||++||.+|+|||+||||..
T Consensus 77 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~~~~~~~~~~~~~~d~ 156 (441)
T 2hxt_A 77 LSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDA 156 (441)
T ss_dssp CBHHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCHHHHHHHCCCTTCTTT
T ss_pred CChHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCcccccccccccccccc
Confidence 99887764 56666431 1221111124689999999999999999999999999963
Q ss_pred --------------------------Ceeeeceee-c--CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHH
Q 015161 177 --------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227 (412)
Q Consensus 177 --------------------------~~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr 227 (412)
+.+|.|.+. + ..+++++.+.+++++++||+++|+|+|.+++.|+++|++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR 236 (441)
T 2hxt_A 157 LTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLAR 236 (441)
T ss_dssp CCHHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHH
Confidence 256776542 2 13788999999999999999999999998999999999999
Q ss_pred Hh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHH
Q 015161 228 AV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVK 305 (412)
Q Consensus 228 ~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~ 305 (412)
++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++ ++||++||+++++.+++
T Consensus 237 ~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~ 310 (441)
T 2hxt_A 237 AAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDI--AWIEEPTSPDDVLGHAAIRQ----GITPVPVSTGEHTQNRVVFK 310 (441)
T ss_dssp HHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCC--SCEECCSCTTCHHHHHHHHH----HHTTSCEEECTTCCSHHHHH
T ss_pred HhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeCCCCHHHHHHHHHHHh----hCCCCCEEEeCCcCCHHHHH
Confidence 96 8999999999999999999999999999997 49999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc-----cCCCC--ceecccCCcc
Q 015161 306 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA-----GLGCF--KFIDLDTPLL 377 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa-----a~~~~--~~~e~~~p~~ 377 (412)
++++.+++|++|+|++++| ++++++++++|+++|+++++|+. +.+++. ++.|+++ ..++. .++|+...
T Consensus 311 ~~i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~~-~~~~~~-~~~~~a~~~~~~~~~~~~~~~~e~~~~-- 386 (441)
T 2hxt_A 311 QLLQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAG-GVGLCE-LVQHLAMADFVAITGKMEDRAIEFVDH-- 386 (441)
T ss_dssp HHHHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEECCCCC-STTHHH-HHHHHHHHHHHHTTCCCTTCCEEECCS--
T ss_pred HHHHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEEEecC-hHHHHH-HHHHHHhcchhhccccccCcceeechh--
Confidence 9999999999999999998 99999999999999999998863 333332 2335442 22332 24554321
Q ss_pred cccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 378 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 378 ~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
..+.+.++++++||++.+|++||||+++|++.+
T Consensus 387 -~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l 419 (441)
T 2hxt_A 387 -LHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 419 (441)
T ss_dssp -SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHH
T ss_pred -hhhhccCCccccCCeEECCCCCCCCcccCHHHH
Confidence 234456778899999999999999999999865
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=466.74 Aligned_cols=320 Identities=27% Similarity=0.338 Sum_probs=272.1
Q ss_pred eEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhH-HHcCCCCCCHH
Q 015161 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACE-VLKESPAMALG 127 (412)
Q Consensus 49 ~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~-~l~g~~~~~~~ 127 (412)
.+++++.+++||+.||++|+|+.++++.++|+|+ |+|++||||+.+.+.+ +|+.+.+...++.+.+ .+.+.+ .+
T Consensus 5 r~l~~~~~r~pl~~pF~is~g~~t~~~~v~V~i~-d~G~~G~GE~~p~~~~-get~e~~~~~l~~~~~~~~~~~~---~~ 79 (329)
T 4gfi_A 5 RYLQATTERFAVAGSFTISRGTRTHADVVTCTIR-DGSFTGIGECVPYPRY-GESIEGVTADIEAMADRVAAGLT---RQ 79 (329)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEECCCGGG-TCCHHHHHHHHHTTHHHHHHTCC---HH
T ss_pred cEEEEEEEEEeccCcEEccCeEEEEeEEEEEEEE-ECCEEEEEeccCCCCC-CcCHHHHHHHHHHHhhhhccccc---hh
Confidence 6889999999999999999999999999999996 6899999999988766 4777766665555433 344432 22
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecCCCHHHHHHHHHHHHHcCCC
Q 015161 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFT 206 (412)
Q Consensus 128 ~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~ 206 (412)
... ... ++. .|++||||||||+.||..|+|+|+||||.. +++++|++++..++++...++.+ ..||+
T Consensus 80 ~~~----~~~-~~~-----~a~aaid~AlwDl~gk~~g~pl~~llgG~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (329)
T 4gfi_A 80 ELQ----QVM-KPG-----AARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTAE--NAGRP 147 (329)
T ss_dssp HHH----HHS-CSS-----HHHHHHHHHHHHHHHHHHSCCHHHHHHSSCCCCEECCEEECCCCHHHHHHHHHH--TTTSS
T ss_pred hHH----hhc-ccH-----HHHHHHHHHHHHHHhhhcCCChhHHhCCCCCCceeeeecccCCChHHHHHHHHh--hcccc
Confidence 111 112 222 379999999999999999999999998875 58999999999999887666543 57999
Q ss_pred EEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 207 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 207 ~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
.+|+|+|. ++|.++++++|+++|++.||||+|++|++++|+++++.|+++++. |||||++++|.+++.+ .
T Consensus 148 ~~Kik~g~--~~d~~~v~~vr~~g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~~~~~~~~------~ 217 (329)
T 4gfi_A 148 LLKIKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKIS--LIEQPLPAGKDAMLAR------I 217 (329)
T ss_dssp EEEEECCS--SCCHHHHHHHHHHCTTSEEEEECTTCCCTTTHHHHHHHHHHTTCC--EEECCSCTTSCGGGGG------S
T ss_pred EEEecCCc--ccHHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHhhhhcCce--EEEecCCCccHHHHHH------h
Confidence 99999986 568999999999999999999999999999999999999999984 9999999998876543 3
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++.+||++||++++..++.+.. +++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++|+|+++
T Consensus 218 ~~~ipia~dEs~~~~~d~~~~~--~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~- 294 (329)
T 4gfi_A 218 EHPVLICADESVHSTEDLAGLR--DRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGT- 294 (329)
T ss_dssp CCSSEEEESTTCCTGGGSGGGT--TTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHTTTC-
T ss_pred cCCCCchhccCCCCHHHHHHHh--hccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcchhHHHHHHHHHHHhCC-
Confidence 5689999999999999987743 68999999999998 9999999999999999999999999999999999998754
Q ss_pred CCceecccCCcccccCCCCCceeeeCcEEeeCCCCCc
Q 015161 366 CFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 402 (412)
Q Consensus 366 ~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGl 402 (412)
.++|+++|+++.+|+. +..+.||++.+|++|||
T Consensus 295 --~~~dld~~~~l~~d~~--~~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 295 --AFADLDGPLLLAEDRD--PGLVYEGSLVYPARPEL 327 (329)
T ss_dssp --SEECCCHHHHBSSCCS--SCCCEETTEECCCCTTT
T ss_pred --CeeccCcchhhhccCC--CCcEEcCeEECCCCCCC
Confidence 5789999988877753 34466888999999997
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=458.82 Aligned_cols=319 Identities=28% Similarity=0.383 Sum_probs=267.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHc-CCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLK-ESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~-g~~~~~ 125 (412)
||++|+++++++|++.||+++.++++.++.++|+|+ ++|++||||+.+.+.+ +++.......++.+.|.++ |.+
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~-g~~~~~~~~~i~~~~~~l~~~~~--- 77 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRY-GESDASVMAQIMSVVPQLEKGLT--- 77 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGGG-TCCHHHHHHHHHTTHHHHHTTCC---
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCCc-CCCHHHHHHHHHHHHHHHhcCCC---
Confidence 578999999999999999999999899999999999 7899999999987654 3444444444555677774 544
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCee-eeceeecCCCHHHHHHHHHHHHHcC
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI-TTDITIPIVSPAEAAELASKYRKQG 204 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i-~~~~~i~~~~~~~~~~~~~~~~~~G 204 (412)
++.+++ + .+ + .++++||||||||+.||..|+|||+||||..++. ...++++..+++++.+++++++++|
T Consensus 78 ~~~~~~-~---~~-~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~G 147 (324)
T 1jpd_X 78 REELQK-I---LP-A-----GAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAG 147 (324)
T ss_dssp HHHHHH-H---SC-S-----SHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCCSEEEBCEEECSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-h---Cc-c-----HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceeEEeeCCCHHHHHHHHHHHHHcC
Confidence 444432 2 22 1 1489999999999999999999999999975422 2234566778999999999999999
Q ss_pred CCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 205 FTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 205 f~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
|+++|+|+|. ++|+++++++|++.|++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++++
T Consensus 148 ~~~~KiKvg~--~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~--- 220 (324)
T 1jpd_X 148 AKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFI--- 220 (324)
T ss_dssp CSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGSSC---
T ss_pred CCEEEEEeCC--chHHHHHHHHHHhCCCCEEEEECcCCCCHHHHHHHHHHHHhCCC--CEEECCCCCCCHHHHHhcc---
Confidence 9999999996 57999999999988899999999999999999999999999997 4999999999999998762
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
+++||++||++++..+++++++. +|++|+|++++| ++++++++++|+++|+++++|||+||++++++++|+++.
T Consensus 221 ---~~ipIa~dE~~~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~~la~~ 295 (324)
T 1jpd_X 221 ---HPLPICADESCHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQ 295 (324)
T ss_dssp ---CSSCEEESTTCSSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHGGGGGG
T ss_pred ---CCCCEEEcCCCCCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeCcchHHHHHHHHHHHhhc
Confidence 58999999999999999999854 899999999998 999999999999999999999999999999999999975
Q ss_pred CCCCceecccCCcccccCCCCCceeeeCcEEee
Q 015161 364 LGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 396 (412)
Q Consensus 364 ~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~ 396 (412)
+ .++++++|+++.+|++ ++++++||++.+
T Consensus 296 ~---~~~~l~~~~~~~~d~~-~~~~~~~G~i~~ 324 (324)
T 1jpd_X 296 V---SFADLDGPTWLAVDVE-PALQFTTGELHL 324 (324)
T ss_dssp C---SEECCCGGGGBSSCCS-SCCEEETTEEEC
T ss_pred C---CccCCCchhhhhccCC-CCcEEECCEEeC
Confidence 5 5788988877778886 678999999864
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-57 Score=456.98 Aligned_cols=314 Identities=16% Similarity=0.210 Sum_probs=259.8
Q ss_pred ccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCCHHHHHHHHHhhcC---CCc
Q 015161 66 IATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLLP---GHQ 141 (412)
Q Consensus 66 ~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~~---g~~ 141 (412)
++++. +.++.++|+|+|++|++||||+.. ++.. ...+ +.+.|.|+|+++.+++.+|+.|.+... +..
T Consensus 62 ts~g~-~~~~~v~V~v~td~G~~G~GE~~~-----g~~~---~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~~~g~~ 132 (415)
T 2p3z_A 62 QSFGI-NVLGTLIVEVEAENRQTGFAVSTA-----GEMG---CFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSG 132 (415)
T ss_dssp HHHTT-TSSCEEEEEEEETTSCEEEEEEEC-----HHHH---HHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTTTSTTS
T ss_pred ccccc-ccceEEEEEEEECCCCEEEEEecC-----CHHH---HHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhcccCCC
Confidence 33343 367899999999999999999853 2322 1223 348899999999999999999876432 211
Q ss_pred chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC------
Q 015161 142 FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK------ 214 (412)
Q Consensus 142 ~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~------ 214 (412)
....+|++||||||||+.||..|+|||+||||. ++++|+|.+. .++++ .+++||+++|+|+|.
T Consensus 133 -~~~~~A~said~ALwDl~ak~~g~Pl~~lLGG~~~~~vp~y~~g--~~~~~-------~~~~G~~~~KiK~g~g~~~G~ 202 (415)
T 2p3z_A 133 -GLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATG--ARPDL-------AKEMGFIGGKMPTHWGPHDGD 202 (415)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEEEEES--SCHHH-------HHHHTCSEEEEECCCCGGGHH
T ss_pred -cchHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeeecC--CCHHH-------HHHhCcceEEEecccCccccc
Confidence 112368999999999999999999999999996 5689988762 24432 345799999999962
Q ss_pred -ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC--C
Q 015161 215 -NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--V 290 (412)
Q Consensus 215 -~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--i 290 (412)
++++|+++|+++|++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++ +++ +
T Consensus 203 ~~~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i--~~iEqPl~~~d~~~~~~l~~----~~~~~i 276 (415)
T 2p3z_A 203 AGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNL--KWIEECLPPQQYEGYRELKR----NAPAGM 276 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTC
T ss_pred ccHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC--ceEeCCCCcchHHHHHHHHH----hcCCCC
Confidence 467899999999997 7999999999999999999999999999997 49999999999999999986 455 8
Q ss_pred eEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce
Q 015161 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369 (412)
Q Consensus 291 pIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~ 369 (412)
||++||++++..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++ ..+++|++++++|+.+
T Consensus 277 pIa~dE~~~~~~~~~~~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~------~~a~~hlaaa~p~~~~ 349 (415)
T 2p3z_A 277 MVTSGEHHGTLQSFRTLAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS------SVYSHHAVITFTNTPF 349 (415)
T ss_dssp EEEECTTCCSHHHHHHHHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC------HHHHHHHHTTCTTCCC
T ss_pred cEEcCCCCCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh------HHHHHHHHHhCCCCcc
Confidence 999999999999999999999 999999999998 99999999999999999999875 1368999999999998
Q ss_pred ecccCC-------cccccCCCCCceeeeCcEEeeC--CCCCcccccCCCCC
Q 015161 370 IDLDTP-------LLLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 411 (412)
Q Consensus 370 ~e~~~p-------~~~~~d~~~~~~~~~~G~~~~p--~~pGlG~~ld~~~~ 411 (412)
+|+... ..+..+.+.+++.++||++.+| ++||||+++|++.+
T Consensus 350 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~p~P~~PGLGveld~~~~ 400 (415)
T 2p3z_A 350 SEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCH 400 (415)
T ss_dssp EEEECCSTTSSSCCCTTTTTEETCCCCBTTEEEGGGGCSSBTSCEECTTSC
T ss_pred ccccccccccccccchhhhhccCCCeeECCEEECCCCCCCCcceeECHHHH
Confidence 886321 1122344444456789999998 99999999999974
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=438.24 Aligned_cols=299 Identities=20% Similarity=0.237 Sum_probs=261.2
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (412)
||++|+++++++|++.||.++.++++.++.++|||+|+ |++||||+.+.+++++|+...+...++. +.|.++|+ .+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~--~~ 78 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD--CE 78 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC--CC
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh--hh
Confidence 68999999999999999999999999999999999996 9999999999888888887766666654 67888887 21
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCC
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGF 205 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf 205 (412)
+.+ .. .+++||||||||+.||..|+|+| +.+++| ..+++++.++++++ +||
T Consensus 79 -----------l~~--~~---~a~~aid~ALwDl~gk~~g~p~~-------~~v~~~----~~~~~~~~~~a~~~--~G~ 129 (322)
T 1r6w_A 79 -----------LPQ--MP---SVAFGVSCALAELTDTLPQAANY-------RAAPLC----NGDPDDLILKLADM--PGE 129 (322)
T ss_dssp -----------CCS--SH---HHHHHHHHHHHHHTTCSCCCSCC-------CCCCEE----CSCHHHHHHHHHTC--CSS
T ss_pred -----------ccc--Ch---HHHHHHHHHHHHhcCCCCCCCcc-------ceEEEe----CCCHHHHHHHHHHh--CCC
Confidence 122 22 48999999999999999999876 335554 45788887777664 799
Q ss_pred CEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC---CCCCceeecCCCCCCHHHHHHhH
Q 015161 206 TTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 206 ~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~---~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
+++|+|+|. ++++|+++++++|++.|++.|++|+|++|++++|+++++.|+++ ++ .|||||++ +++++++|+
T Consensus 130 ~~~KiKvG~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~--~~~~~~~l~ 205 (322)
T 1r6w_A 130 KVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCK--TRDDSRAFA 205 (322)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGE--EEEECCBS--SHHHHHHHH
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCe--eEEECCCC--ChHHHHHHH
Confidence 999999996 89999999999999888999999999999999999999999998 86 59999997 478899987
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||++++. ++ ++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+.++++||
T Consensus 206 ~----~~~ipIa~dE~~~~~-~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa~~hl 279 (322)
T 1r6w_A 206 R----ETGIAIAWDESLREP-DF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARI 279 (322)
T ss_dssp H----HHCCCEEESGGGGST-TC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCh-hH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECccccHHHHHHHHHH
Confidence 5 578999999999994 56 6668899999999999998 999999999999999999999999999999999999
Q ss_pred HccCCCCceecccCCcccccCCCCCce
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGY 387 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~ 387 (412)
++++++..+++++++.++.+|++.+++
T Consensus 280 aa~~~~~~~~~l~t~~~~~~d~~~~~~ 306 (322)
T 1r6w_A 280 AAWLTPDTIPGLDTLDLMQAQQVRRWP 306 (322)
T ss_dssp HHHHCTTSCCBCTTGGGBSCEESSCCT
T ss_pred HHhcCCCCccCCCchhhhhhccccCCc
Confidence 999988889999998877888776655
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-56 Score=449.10 Aligned_cols=314 Identities=18% Similarity=0.180 Sum_probs=260.0
Q ss_pred ceeccC-ceeeeeeEEEEEEEECCCcEEEEEeccC---------CccCcccHHHHHHHHH-HHhHHHcCCCCCCHHHHHH
Q 015161 63 PFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVL---------PHVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFG 131 (412)
Q Consensus 63 pf~~a~-~~~~~~~~~lV~v~t~~G~~G~GE~~~~---------~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~ 131 (412)
|++.+. ++++.++.++|+|+|++|++||||+.+. +.++++++.. .++ .+.|.|+|+++.+++.+|+
T Consensus 38 p~~~~f~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~~~~~~---~i~~~l~p~LiG~d~~~~~~i~~ 114 (413)
T 1kko_A 38 PVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIP---FLNDHIKPLLEGRDVDAFLPNAR 114 (413)
T ss_dssp CCSTTCSSSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHH---HHHHHTHHHHTTCBCSCSHHHHH
T ss_pred CccCCcceEEEecceEEEEEEECCCCEEEEEecccccccccccCccccHHHHHH---HHHHHHHHHHcCCChHhHHHHHH
Confidence 444442 4567789999999999999999999875 5555555443 344 3789999999999999999
Q ss_pred HHHhhcC-CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CCeeeeceeecC---CCHHHHHHHHHHHH
Q 015161 132 VVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPI---VSPAEAAELASKYR 201 (412)
Q Consensus 132 ~l~~~~~-g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~---~~~~~~~~~~~~~~ 201 (412)
.|..... +... ..+|++||||||||+.||..|+|||+||||. +++||+|.+.+. .+++++.+++.+++
T Consensus 115 ~l~~~~~~~~~~--~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~~g~~~~~~~~~~~~~~~~~~ 192 (413)
T 1kko_A 115 FFDKLRIDGNLL--HTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVL 192 (413)
T ss_dssp HHHHCEETTEEC--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECCCTTCTTHHHHHHHHTTCSEE
T ss_pred HHHhhhcccCcc--HHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEecCccccCCHHHHHHHHHHHH
Confidence 9876432 2111 1358999999999999999999999999984 457888776332 25677777777778
Q ss_pred HcC-CCEEeEecCCChhH-------HHHHHHHHHHh-CCCcEEEEeCCC------CCCHHHHHHHHHHHHcCCCCCc-ee
Q 015161 202 KQG-FTTLKLKVGKNLKE-------DIEVLRAIRAV-HPDSSFILDANE------GYKPQEAVEVLEKLYEMGVTPV-LF 265 (412)
Q Consensus 202 ~~G-f~~~KiKvG~~~~~-------D~~~v~avr~~-~~~~~l~vDaN~------~~~~~~A~~~~~~l~~~~l~~~-~i 265 (412)
++| |++||+|+|.+.+. |++++++||++ ++++.|++|+|+ +|++++|++++++|+++++.+. ||
T Consensus 193 ~~G~~~~iK~KvG~~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~i 272 (413)
T 1kko_A 193 PHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI 272 (413)
T ss_dssp EETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE
T ss_pred hCCCccEEEEecCCChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEE
Confidence 899 99999999976544 45899999996 789999999999 9999999999999999654212 99
Q ss_pred ecCCC----CCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcC
Q 015161 266 EQPVH----RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 339 (412)
Q Consensus 266 EeP~~----~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~g 339 (412)
|||++ ++|++++++|++.+.. .+++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 273 EqP~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~g 352 (413)
T 1kko_A 273 EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHG 352 (413)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHT
T ss_pred ECCcCCCCCcccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 99999 6799999999852210 06899999999999999999999999999999999998 999999999999999
Q ss_pred CcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCC
Q 015161 340 LNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHW 408 (412)
Q Consensus 340 i~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~ 408 (412)
+++++||+. ||+++.++++||++++++ ..+|++||+|++.++
T Consensus 353 i~~~~~~~~~et~i~~aa~~hlaaa~~~---------------------------~~ip~kpG~g~~~~~ 395 (413)
T 1kko_A 353 MEAYQGGTCNETEISARTCVHVALAARP---------------------------MRMLIKPGMGFDEGL 395 (413)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHHCC---------------------------SEEECCSCSSSHHHH
T ss_pred CeEEecCCCCCCHHHHHHHHHHHHcCCC---------------------------CcccCCCCCCCCccH
Confidence 999999996 999999999999998742 246889999998764
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-55 Score=443.43 Aligned_cols=308 Identities=15% Similarity=0.198 Sum_probs=260.5
Q ss_pred ccceeccCcee-eeeeEEEEEEEECCCcEEEEEeccCCc--cC----cccHHHHHHHHHH-HhHHHcCCCCCCHHHHHHH
Q 015161 61 IAPFTIATSRL-DQVENVAIRIELSNGCVGWGEAPVLPH--VT----AEDQQTAMVKASE-ACEVLKESPAMALGSVFGV 132 (412)
Q Consensus 61 ~~pf~~a~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~--~~----~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~ 132 (412)
..||+++.+++ +.++.++|+|+|++|++||||+.+.+. ++ .++.+.+...+++ ++|.|+|+++.+++.+|+.
T Consensus 36 ~~P~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~ 115 (413)
T 1kcz_A 36 GSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEE 115 (413)
T ss_dssp SCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHH
T ss_pred CCCEEcccceEeecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 46999998888 889999999999999999999987642 21 1334445555664 8999999999999999999
Q ss_pred HHhhc-CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC------CCCeeeeceeecC---CCHHHHHHHHHHHHH
Q 015161 133 VAGLL-PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG------VSNTITTDITIPI---VSPAEAAELASKYRK 202 (412)
Q Consensus 133 l~~~~-~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg------~~~~i~~~~~i~~---~~~~~~~~~~~~~~~ 202 (412)
|.... .|+.. ..+|++||||||||+.||..|+|||+|||| .++++|+|.+.+. .+++++.++++++.+
T Consensus 116 l~~~~~~g~~~--~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~g~~~~~~~~~~~~~a~~~~~ 193 (413)
T 1kcz_A 116 FDKMTVNGNRL--HTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLP 193 (413)
T ss_dssp HHHCEETTEEC--CHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEE
T ss_pred HHhcccCCcch--HHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEecCccccCCHHHHHHHHHHHHH
Confidence 95432 23221 236899999999999999999999999998 4568998876552 356778888888888
Q ss_pred cC-CCEEeEecCCC---hhH----HHHHHHHHHHh-CCCcEEEEeCCCC------CCHHHHHHHHHHHHcC--CCCCcee
Q 015161 203 QG-FTTLKLKVGKN---LKE----DIEVLRAIRAV-HPDSSFILDANEG------YKPQEAVEVLEKLYEM--GVTPVLF 265 (412)
Q Consensus 203 ~G-f~~~KiKvG~~---~~~----D~~~v~avr~~-~~~~~l~vDaN~~------~~~~~A~~~~~~l~~~--~l~~~~i 265 (412)
+| |+++|+|+|.+ +.+ |+++|++||++ ++++.|++|+|++ |++++|++++++|+++ ++ +.||
T Consensus 194 ~G~~~~~KiKvG~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i-~~~i 272 (413)
T 1kcz_A 194 HALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPF-HLRI 272 (413)
T ss_dssp ECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTS-CEEE
T ss_pred hcchhheeeccCCCccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCc-ceEE
Confidence 99 99999999965 444 89999999997 7899999999999 9999999999999998 65 2499
Q ss_pred ecCCCC----CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcC
Q 015161 266 EQPVHR----DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 339 (412)
Q Consensus 266 EeP~~~----~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~g 339 (412)
|||++. +|++++++|++.++ +.+++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 273 EqP~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~g 352 (413)
T 1kcz_A 273 EGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANG 352 (413)
T ss_dssp ECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTT
T ss_pred ecCCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 999964 48999999985211 016899999999999999999999999999999999998 999999999999999
Q ss_pred CcEEEcc-CcchHHHHHHHHHHHccCCCCceec
Q 015161 340 LNLMIGG-MVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 340 i~~~~~~-~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
+++++|| ++||+++.++++||+++++++.+.+
T Consensus 353 i~~~~~~~~~es~i~~~a~~hlaaa~~~~~i~~ 385 (413)
T 1kcz_A 353 MGAYCGGTCNETNRSAEVTTNIGMACGARQVLA 385 (413)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHHHhcCCCCceee
Confidence 9999998 7899999999999999998866554
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-54 Score=422.66 Aligned_cols=289 Identities=22% Similarity=0.253 Sum_probs=245.9
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+|+++++++|++.||+++.++++.++.++|||+|++|++||||+.+.+.++.|+...++..++.+.+.+ ++.+++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~~~~~ 80 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEIMATI 80 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHHHTTS
T ss_pred EEEEEEEEeecCCCcEecCEEEEeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHHHHHH
Confidence 789999999999999999999999999999999999999999999888788888776665443344432 33222222
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEe
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 209 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~K 209 (412)
|+. +. .+++||||||| +.|| |||..++ +.|... +.+++++.+++++++++||+++|
T Consensus 81 ~~~---------~~---~a~~aid~Al~-l~gk---------lgg~~~~-~~y~~~-~~~~e~~~~~a~~~~~~G~~~~K 136 (332)
T 2ozt_A 81 PEA---------LP---AAQFGFATAWQ-SVGR---------LPYRVRP-WPICAL-LGSGQAALEQWQQSWQRGQTTFK 136 (332)
T ss_dssp CTT---------CH---HHHHHHHHHHH-HTTT---------CSCCCCC-CCBCEE-ECTGGGHHHHHHHHHHTTCCEEE
T ss_pred HHH---------hH---HHHHHHHHHHH-Hhcc---------cCCCCCC-cceEEe-cCChHHHHHHHHHHHHcCCcEEE
Confidence 211 12 37899999999 8887 4554334 555332 45788899999999999999999
Q ss_pred EecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcC---CCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 210 LKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 210 iKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~---~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
+|+|. ++++|++++++||++ ++++.|++|+|++|++++|+++++.|+++ ++ .|||||++++|++++++|++
T Consensus 137 iKvg~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~d~~~~~~l~~-- 212 (332)
T 2ozt_A 137 WKVGVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI--EYVEQPLPPDQWQALLSLAQ-- 212 (332)
T ss_dssp EECSSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEeCCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCc--ceeECCCCCCCHHHHHHHHH--
Confidence 99996 689999999999998 78899999999999999999999999999 76 59999999999999999985
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHc--CCcEEEccCcchHHHHHHHHHHH
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~--gi~~~~~~~~es~i~~~a~~hla 361 (412)
++++||++||++++..+++++++.+++|++|+|++++| ++ +++++|+++ |+++++||++||+|++++++||+
T Consensus 213 --~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~es~i~~aa~~hla 287 (332)
T 2ozt_A 213 --TVTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLL 287 (332)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCSCCHHHHHHHHHHH
T ss_pred --hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCcchHHHHHHHHHHH
Confidence 57899999999999999999999999999999999997 86 778899999 99999999999999999999999
Q ss_pred ccCCCCceecccC
Q 015161 362 AGLGCFKFIDLDT 374 (412)
Q Consensus 362 aa~~~~~~~e~~~ 374 (412)
++++|...+.+++
T Consensus 288 a~~~~~~~~gl~t 300 (332)
T 2ozt_A 288 ETWQPCHALGFGV 300 (332)
T ss_dssp HHHCCCSCBBCCC
T ss_pred HhCCCCcCCcCCc
Confidence 9998765555555
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-51 Score=414.55 Aligned_cols=307 Identities=18% Similarity=0.241 Sum_probs=252.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC---------------ccCcccHHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---------------HVTAEDQQTAMV 109 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~---------------~~~~e~~~~~~~ 109 (412)
.|||++|+++.+..+ .+ ++.++|+|+|++|++|||+++... .+.+++...+..
T Consensus 8 ~MkI~~i~~~~v~~s--------~g----~~~v~V~v~td~G~~G~G~~~~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~ 75 (427)
T 2pa6_A 8 RFEIKDIVAREVIDS--------RG----NPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGKGVLMAVE 75 (427)
T ss_dssp GGBEEEEEEEEEECT--------TS----CEEEEEEEEETTCCEEEEECCCCCSSCSSSCCCCCCCSSGGGGTCCHHHHH
T ss_pred CCEEEEEEEEEEEcC--------CC----CceEEEEEEECCCCeeeEecccccccCcceeEeecCCccccccccHHHHHH
Confidence 389999999999743 22 468999999999999999764321 144555666666
Q ss_pred HHHH-HhHHHcCCCCCCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee--
Q 015161 110 KASE-ACEVLKESPAMALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-- 184 (412)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~-- 184 (412)
.+++ +.|.|+|+++.+++.+|+.|.+...... .....+|++||||||||+.||.+|+|||+||||. ++++|+|..
T Consensus 76 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~~~~vp~~~~~~ 155 (427)
T 2pa6_A 76 NVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFNSYVMPVPMMNV 155 (427)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSCCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccchhcc
Confidence 6764 8999999999999999999876311110 0012368999999999999999999999999997 457887642
Q ss_pred e----------cC------CCHHHHHHHHHHHHHcCCCEEeE----ecCC-------------ChhHHHHHHHHHHHh--
Q 015161 185 I----------PI------VSPAEAAELASKYRKQGFTTLKL----KVGK-------------NLKEDIEVLRAIRAV-- 229 (412)
Q Consensus 185 i----------~~------~~~~~~~~~~~~~~~~Gf~~~Ki----KvG~-------------~~~~D~~~v~avr~~-- 229 (412)
+ ++ ..++++.+++.++.++||+++|+ |+|. +++.|+++|++||++
T Consensus 156 ~~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~ 235 (427)
T 2pa6_A 156 INGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVK 235 (427)
T ss_dssp EECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHH
T ss_pred ccccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHH
Confidence 1 11 12256678888889999999998 7442 367899999999984
Q ss_pred --CC--CcEEEEeC-------CCCC-------CHHHHHHHHH-HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC
Q 015161 230 --HP--DSSFILDA-------NEGY-------KPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 230 --~~--~~~l~vDa-------N~~~-------~~~~A~~~~~-~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
++ ++.|++|+ |++| ++++|++++. .++++++ .|||||++++|++++++|++ ++++
T Consensus 236 ~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~i 309 (427)
T 2pa6_A 236 KAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPI--VSIEDPFHEEDFEGFAMITK----ELDI 309 (427)
T ss_dssp HHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HSSS
T ss_pred HhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCC--cEEEcCCChhhHHHHHHHHh----hCCC
Confidence 56 89999999 6665 8999999975 7999987 59999999999999999985 5789
Q ss_pred eEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCC
Q 015161 291 SVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 291 pIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~ 367 (412)
||++||+ +++..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.++++|++++.+++
T Consensus 310 pIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~~~ 389 (427)
T 2pa6_A 310 QIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQI 389 (427)
T ss_dssp EEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCSEE
T ss_pred eEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCCcc
Confidence 9999999 666999999999999999999999998 999999999999999999996665 9999999999999998876
Q ss_pred ce
Q 015161 368 KF 369 (412)
Q Consensus 368 ~~ 369 (412)
..
T Consensus 390 ~~ 391 (427)
T 2pa6_A 390 KT 391 (427)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-51 Score=413.66 Aligned_cols=302 Identities=20% Similarity=0.281 Sum_probs=254.4
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc-----------------cCcccHHHHH
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAM 108 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~-----------------~~~e~~~~~~ 108 (412)
|+|++|+.+.+. .+.+ ++.++|+|+|++|++| ||+.+.+. |.++++..++
T Consensus 1 ~~I~~v~~~~v~--------~srg----~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~ 67 (431)
T 2fym_A 1 SKIVKIIGREII--------DSRG----NPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGVTKAV 67 (431)
T ss_dssp CBEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CeeEEEEEEEEE--------cCCC----CeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccHHHHH
Confidence 789999999873 2222 3679999999999999 99987643 3334466666
Q ss_pred HHHHH-HhHHHcCCCCCCHHHHHHHHHhhcCCCc--chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ce----ee
Q 015161 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLPGHQ--FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NT----IT 180 (412)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~--~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~----i~ 180 (412)
..+++ +.|.|+|+++.+++.+|+.|.+. .+.. .....+|++||||||||+.||.+|+|||+||||.. ++ +|
T Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~-~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~~~~~~p 146 (431)
T 2fym_A 68 AAVNGPIAQALIGKDAKDQAGIDKIMIDL-DGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMP 146 (431)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHH-HCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-hCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccccc
Confidence 66765 89999999999999999998763 2211 01123689999999999999999999999999964 34 77
Q ss_pred ece------------eecCCC----H--HHHHHHHHHHHHcCCCEEe---------EecCC------ChhHHHHHHHHHH
Q 015161 181 TDI------------TIPIVS----P--AEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIR 227 (412)
Q Consensus 181 ~~~------------~i~~~~----~--~~~~~~~~~~~~~Gf~~~K---------iKvG~------~~~~D~~~v~avr 227 (412)
+++ ++++.+ | ++..+++.++.++||+++| +|+|. +++.|+++|++||
T Consensus 147 v~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~gg~~~~~~~d~~~l~~vr 226 (431)
T 2fym_A 147 VPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIA 226 (431)
T ss_dssp EECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHH
T ss_pred ceeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCcccCCCCCccchHHHHHHHH
Confidence 654 222333 5 6677888888899999999 99985 7788999999999
Q ss_pred Hh--------CCCcEEEEeC----------------C-CCCCHHHHHHHHHHHHc-CCCCCceeecCCCCCCHHHHHHhH
Q 015161 228 AV--------HPDSSFILDA----------------N-EGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 228 ~~--------~~~~~l~vDa----------------N-~~~~~~~A~~~~~~l~~-~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
++ ++++.|++|+ | ++|++++|++++++|++ +++ .|||||++++|++++++|+
T Consensus 227 eai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i--~~iEePl~~~d~~~~~~l~ 304 (431)
T 2fym_A 227 EAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQT 304 (431)
T ss_dssp HHHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHH
T ss_pred HHHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcccHHHHHHHH
Confidence 95 4789999999 9 99999999999999998 986 5999999999999999998
Q ss_pred HHhhccc--CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHH
Q 015161 282 HIAKDKF--GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGF 356 (412)
Q Consensus 282 ~~~~~~~--~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a 356 (412)
+ ++ .+||++|| +++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++.++
T Consensus 305 ~----~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a 380 (431)
T 2fym_A 305 K----VLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIA 380 (431)
T ss_dssp H----HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHH
T ss_pred H----HhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHH
Confidence 6 45 79999999 9999999999999999999999999998 999999999999999999999888 99999888
Q ss_pred HHHHHccCCCC
Q 015161 357 AGHLSAGLGCF 367 (412)
Q Consensus 357 ~~hlaaa~~~~ 367 (412)
++|++++.++.
T Consensus 381 ~la~a~~~~~i 391 (431)
T 2fym_A 381 DLAVGTAAGQI 391 (431)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHhcCCCcc
Confidence 88888876643
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-50 Score=393.68 Aligned_cols=282 Identities=27% Similarity=0.386 Sum_probs=227.1
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+|+++++++||+.||+ ..+.++.++|+ |.+||||+.+.+.++.+ + .
T Consensus 2 ~i~~~~~~~Pl~~pf~----~~~~r~~~lV~-----G~~G~GE~~p~~~~~~~---~-------~--------------- 47 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFR----GITVREGMLVR-----GAAGWGEFSPFAEYGPR---E-------C--------------- 47 (327)
T ss_dssp CCSEEEEEEEEEEEET----TEEEEEEEEEE-----CSSCEEEECCCTTCCHH---H-------H---------------
T ss_pred EEEEEEEEEeeccCce----eeeEEEEEEEE-----cCEEEEEecCCCCCCHH---H-------H---------------
Confidence 5778999999999997 24568888884 99999999987765421 0 0
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEe
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 209 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~K 209 (412)
+ . .+++|||||||| +| |+.++++|+|.+++..+++++.+.++ ++||++||
T Consensus 48 ~------------~---~~~aaid~Al~~-------~P-----g~~r~~v~~~~ti~~~~~e~~~~~~~---~~G~~~~K 97 (327)
T 2opj_A 48 A------------R---WWAACYEAAELG-------WP-----APVRDTVPVNATVPAVGPEEAARIVA---SSGCTTAK 97 (327)
T ss_dssp H------------H---HHHHHHHHHHTC-------CC-----CCSCSEEEBCEEECSCCHHHHHHHHH---HHCCSEEE
T ss_pred H------------H---HHHHHHHHHHhC-------CC-----cCCCCeeEEeEEeCCCCHHHHHHHHH---HCCCCEEE
Confidence 0 0 257999999974 56 66678999999999989888655443 57999999
Q ss_pred EecCC---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhh
Q 015161 210 LKVGK---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAK 285 (412)
Q Consensus 210 iKvG~---~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~ 285 (412)
+|+|. ++++|+++|++||++ +|++.|++|+|++|++++|+++++.|+++++ .|||||++ +++++++|++
T Consensus 98 iKvg~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEqP~~--~~~~~~~l~~--- 170 (327)
T 2opj_A 98 VKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFEL--EYVEQPCA--TVDELAEVRR--- 170 (327)
T ss_dssp EECCC------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECCSS--SHHHHHHHHH---
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--cEEeCCCC--CHHHHHHHHh---
Confidence 99985 578999999999997 7999999999999999999999999999987 59999997 4889999875
Q ss_pred cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccC
Q 015161 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 364 (412)
Q Consensus 286 ~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~ 364 (412)
++++||++||++++..++.++++.+++|++|+|++++| ++++++++ +.+|+++++||++||+|++++++|+++++
T Consensus 171 -~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia---~~~gi~~~~~~~~es~ig~aa~~hlaaa~ 246 (327)
T 2opj_A 171 -RVSVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLA---EECGLPVVVSSAVETSVGLAAGVALAAAL 246 (327)
T ss_dssp -HCSSCEEC-----------CTTTTTCCSBEEECHHHHTSHHHHHHHH---HHTCSCEEEBCCSCCHHHHHHHHHHHHHS
T ss_pred -hCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH---HHcCCcEEEcCCCcCHHHHHHHHHHHHhC
Confidence 67899999999999999999999999999999999997 99999875 45699999999999999999999999999
Q ss_pred CCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 365 GCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 365 ~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++.+ +++.....+.+|++.+++.++||++.+| |+++|++.+
T Consensus 247 ~~~~~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d~~~l 289 (327)
T 2opj_A 247 PELPYACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVSEQRL 289 (327)
T ss_dssp SCCSSCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBCHHHH
T ss_pred CCcccccccCchhhhhhhcccCCCeeECCEEECC-----CcccCHHHH
Confidence 99765 5554323456788878889999999998 689998865
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=396.47 Aligned_cols=302 Identities=17% Similarity=0.228 Sum_probs=249.8
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc-----------------cCcccHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH-----------------VTAEDQQTAMV 109 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~-----------------~~~e~~~~~~~ 109 (412)
.|.+|..+.+- +|.|. +.++|+|+|++|++| ||+.+.+. |.++++..++.
T Consensus 13 ~i~~~~~r~i~--------dsrg~----~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~ 79 (444)
T 1w6t_A 13 IITDVYAREVL--------DSRGN----PTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVD 79 (444)
T ss_dssp BEEEEEEEEEE--------CTTSC----EEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred hcceeEEEEEE--------cCCCC----ceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHHHHHH
Confidence 58888888763 55554 789999999999999 99987542 23344666666
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeecee--
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDIT-- 184 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~-- 184 (412)
.++ .+.|.|+|+++.+++.+|+.|.+...... .....+|++||||||||+.||.+|+|||+||||. ++++|+|.+
T Consensus 80 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~vp~~~~~~ 159 (444)
T 1w6t_A 80 NVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTPMMNI 159 (444)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTTCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccccccccce
Confidence 676 48999999999999999999876321110 0012369999999999999999999999999996 568888763
Q ss_pred e-c---------C------CCHHHHHHHHHHHHHcCCCEEe---------EecCC------ChhHHHHHHHHHHHh----
Q 015161 185 I-P---------I------VSPAEAAELASKYRKQGFTTLK---------LKVGK------NLKEDIEVLRAIRAV---- 229 (412)
Q Consensus 185 i-~---------~------~~~~~~~~~~~~~~~~Gf~~~K---------iKvG~------~~~~D~~~v~avr~~---- 229 (412)
+ + . ...++..+++.++.++||+++| +|+|. +++.|+++|++||++
T Consensus 160 ~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~~~~d~~~l~avreav~~a 239 (444)
T 1w6t_A 160 INGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAA 239 (444)
T ss_dssp EECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHT
T ss_pred eccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCchHhHHHHHHHHHHHHHHh
Confidence 1 1 0 0113456777778888999999 78884 678899999999995
Q ss_pred ----CCCcEEEEeC---------CCC-------------CCHHHHHHHHHHHH-cCCCCCceeecCCCCCCHHHHHHhHH
Q 015161 230 ----HPDSSFILDA---------NEG-------------YKPQEAVEVLEKLY-EMGVTPVLFEQPVHRDDWEGLGHVSH 282 (412)
Q Consensus 230 ----~~~~~l~vDa---------N~~-------------~~~~~A~~~~~~l~-~~~l~~~~iEeP~~~~d~~~~~~l~~ 282 (412)
++++.|++|+ |++ |++++|++++++|. ++++ .|||||++++|++++++|++
T Consensus 240 gy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i--~~iEePl~~~d~~~~~~l~~ 317 (444)
T 1w6t_A 240 GYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTE 317 (444)
T ss_dssp TCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred ccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc--EEEECCCChhhHHHHHHHHH
Confidence 6789999999 888 88999999999986 4986 59999999999999999986
Q ss_pred Hhhccc--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHH
Q 015161 283 IAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFA 357 (412)
Q Consensus 283 ~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~ 357 (412)
++ .+||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+++.+++
T Consensus 318 ----~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~ 393 (444)
T 1w6t_A 318 ----RLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIAD 393 (444)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----hhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHH
Confidence 45 799999998 999999999999999999999999998 999999999999999999997766 999999899
Q ss_pred HHHHccCCCC
Q 015161 358 GHLSAGLGCF 367 (412)
Q Consensus 358 ~hlaaa~~~~ 367 (412)
+|++++.++.
T Consensus 394 lava~~~~~i 403 (444)
T 1w6t_A 394 IAVATNAGQI 403 (444)
T ss_dssp HHHHTTCCEE
T ss_pred HHHhcCCCcc
Confidence 9998877654
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=388.30 Aligned_cols=304 Identities=15% Similarity=0.205 Sum_probs=244.3
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAM 108 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~ 108 (412)
+|+|++|+++.+..|... +.++|+|+|++| +||||+++.. .|.++++..++
T Consensus 3 ~m~I~~i~~~~v~~~~~~------------p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av 69 (432)
T 2ptz_A 3 HMTIQKVHGREVLDSRGN------------PTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAV 69 (432)
T ss_dssp TTSCCEEEEEEEECTTSC------------EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHH
T ss_pred CCEEEEEEEEEEecCCCC------------cEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHH
Confidence 378999999999866543 468999999999 9999986532 24445666666
Q ss_pred HHHHH-HhHHHcCCCCCCHHHHHHHHHhhcCC-CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCCC---eee
Q 015161 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG---GVSN---TIT 180 (412)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g-~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG---g~~~---~i~ 180 (412)
..+++ +.|.|+|+|+.+++.+|+.|.+.... +......+|++||||||||+.||.+|+|||+||| |..+ ++|
T Consensus 70 ~~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp 149 (432)
T 2ptz_A 70 KNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVP 149 (432)
T ss_dssp HHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEE
T ss_pred HHHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCcee
Confidence 66664 89999999999999999988764211 1001123699999999999999999999999999 8642 456
Q ss_pred eceeec--C-----CCHHHH---------HHHHHHHHHcCCCEEeEec----CC----------------ChhHHHHH-H
Q 015161 181 TDITIP--I-----VSPAEA---------AELASKYRKQGFTTLKLKV----GK----------------NLKEDIEV-L 223 (412)
Q Consensus 181 ~~~~i~--~-----~~~~~~---------~~~~~~~~~~Gf~~~KiKv----G~----------------~~~~D~~~-v 223 (412)
+|.++. . .++++. .+++.++.++||+++|+|+ |. +.++|+++ +
T Consensus 150 ~~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~ 229 (432)
T 2ptz_A 150 CFNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILM 229 (432)
T ss_dssp EEEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHH
T ss_pred EEEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHH
Confidence 665442 1 123333 6788888999999999865 42 25789996 8
Q ss_pred HHHHHhCC--CcEEEEeCCCCC---------------------CHHHHHHHH-HHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 224 RAIRAVHP--DSSFILDANEGY---------------------KPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 224 ~avr~~~~--~~~l~vDaN~~~---------------------~~~~A~~~~-~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+++|++++ ++.|++|+|++| +.+++++++ +.+++|++ .|||||++++|++++++
T Consensus 230 ~Air~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i--~~iEdPl~~~D~~g~~~ 307 (432)
T 2ptz_A 230 EAIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAG 307 (432)
T ss_dssp HHHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHH
T ss_pred HHHHHhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcchHHHHHH
Confidence 99997787 899999999885 455555554 67899986 59999999999999999
Q ss_pred hHHHhhccc--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC-cchHHHH
Q 015161 280 VSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAM 354 (412)
Q Consensus 280 l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~-~es~i~~ 354 (412)
|++ ++ .+||++||+ ++++++++++++.+++|++|+|++++| +|++++++++|+++|++++++++ .||.++.
T Consensus 308 l~~----~~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~ 383 (432)
T 2ptz_A 308 ITE----ALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTY 383 (432)
T ss_dssp HHH----HTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCH
T ss_pred HHH----hcCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHH
Confidence 986 45 799999996 799999999999999999999999998 99999999999999999988665 5888888
Q ss_pred HHHHHHHccCCCC
Q 015161 355 GFAGHLSAGLGCF 367 (412)
Q Consensus 355 ~a~~hlaaa~~~~ 367 (412)
.+.+|++++.++.
T Consensus 384 ~a~lava~~~~~i 396 (432)
T 2ptz_A 384 IADLVVALGSGQI 396 (432)
T ss_dssp HHHHHHHHTCSEE
T ss_pred HHHHHHHhCCCCC
Confidence 8888888876654
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=370.92 Aligned_cols=302 Identities=21% Similarity=0.264 Sum_probs=238.8
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAM 108 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~ 108 (412)
.|+|++|..+.+- +|.| .+++.|+|+|++|.+|+|++++.. .|.++++..++
T Consensus 25 ~m~I~~i~~r~i~--------dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av 92 (449)
T 3uj2_A 25 YLEIEKVIGREII--------DSRG----NPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAV 92 (449)
T ss_dssp TTBEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred ceEEEEEEEEEEE--------CCCC----CCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHH
Confidence 4899999988763 3433 378999999999999999876432 35556677777
Q ss_pred HHHH-HHhHHHcCCCCCCHHHHHHHHHhhc--CC-CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC-eeee--
Q 015161 109 VKAS-EACEVLKESPAMALGSVFGVVAGLL--PG-HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITT-- 181 (412)
Q Consensus 109 ~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~--~g-~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~-~i~~-- 181 (412)
..++ .++|.|+|+|+.+++.+|+.|.+.. .+ ..+ ..+|++||||||||+.||.+|+|||+||||..+ ++|+
T Consensus 93 ~~v~~~iap~LiG~d~~~~e~i~~~m~~~dgt~~k~~l--g~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~lpvp~ 170 (449)
T 3uj2_A 93 QNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKF--GANAVLAVSIACAKAAAAALGVPLYRFLGGLNANRLPVPM 170 (449)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTT--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGGCCBCCEEC
T ss_pred HHHHHHHHHHHccCCccCHHHHHHHHHHhcCcCCcchh--hHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCCCceeeee
Confidence 7665 4899999999999999999998742 11 111 236999999999999999999999999999864 5555
Q ss_pred ceee--cCC-----CHH---------HHHHHHHHHHHcCCCEEeE--e-------cCC---------ChhHHHHHH-HHH
Q 015161 182 DITI--PIV-----SPA---------EAAELASKYRKQGFTTLKL--K-------VGK---------NLKEDIEVL-RAI 226 (412)
Q Consensus 182 ~~~i--~~~-----~~~---------~~~~~~~~~~~~Gf~~~Ki--K-------vG~---------~~~~D~~~v-~av 226 (412)
|..+ +.. +.+ +..+++.++.++||+++|+ | +|. +.+++++++ ++|
T Consensus 171 ~n~inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~~~~~~e~l~~i~~AI 250 (449)
T 3uj2_A 171 MNILNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPDLASDEEAIEYILEAV 250 (449)
T ss_dssp EEEEECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSCHHHHHHHHHHHH
T ss_pred EEEecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCCccCHHHHHHHHHHHH
Confidence 5443 111 112 1456777888999999997 4 552 245677777 788
Q ss_pred HHh----CCCcEEEEeCCC------------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHH
Q 015161 227 RAV----HPDSSFILDANE------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283 (412)
Q Consensus 227 r~~----~~~~~l~vDaN~------------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 283 (412)
|++ |+++.|++|+|+ .|++++|++++++ +++|++ .|||||++++|++++++|++.
T Consensus 251 r~agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i--~~IEdPl~~dD~eg~~~L~~~ 328 (449)
T 3uj2_A 251 KLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPI--VSIEDGLDEEDWEGWQYMTRE 328 (449)
T ss_dssp HHTTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHH
T ss_pred HHhccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCc--eEEECCCCcchHHHHHHHHHH
Confidence 887 468999999984 3689999999986 899987 599999999999999999863
Q ss_pred hhcccCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHHHHHHHHH
Q 015161 284 AKDKFGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHL 360 (412)
Q Consensus 284 ~~~~~~ipIa~dEs~~-~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~~~a~~hl 360 (412)
+ ...+||++||++. ++++++++++.+++|++|+|++++| +|++++++++|+++|+++++++ +.||..+..+.+++
T Consensus 329 ~--~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~iadLaV 406 (449)
T 3uj2_A 329 L--GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTTIADLAV 406 (449)
T ss_dssp H--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHH
T ss_pred h--CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHH
Confidence 2 2279999999976 6999999999999999999999998 9999999999999999966555 45887776665555
Q ss_pred HccC
Q 015161 361 SAGL 364 (412)
Q Consensus 361 aaa~ 364 (412)
+...
T Consensus 407 a~~~ 410 (449)
T 3uj2_A 407 ALNT 410 (449)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 5543
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=368.04 Aligned_cols=302 Identities=16% Similarity=0.196 Sum_probs=239.4
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC---------------CccCcccHHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL---------------PHVTAEDQQTAMVKA 111 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~---------------~~~~~e~~~~~~~~~ 111 (412)
+|++|..+.+- +|.| .++|.|+|+|++|.+|++.+++. +.|.++.+..++..+
T Consensus 6 ~i~~i~~r~i~--------dsrG----~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v 73 (417)
T 3qn3_A 6 VIEDVRAYEVL--------DSRG----NPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANV 73 (417)
T ss_dssp BEEEEEEEEEE--------CTTS----CEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHH
T ss_pred eeeEEEEEEEE--------cCCC----CceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHH
Confidence 79999988763 4555 48899999999999999876542 124445566777777
Q ss_pred HH-HhHHHcCCCCCCHHHHHHHHHhhcC-CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeecee--e-
Q 015161 112 SE-ACEVLKESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDIT--I- 185 (412)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~~-g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~--i- 185 (412)
++ ++|.|+|+|+.+++.+|+.|.+... .+......+|++||||||||+.||.+|+|||+||||.. +++|+|.. +
T Consensus 74 ~~~iap~LiG~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG~~~~~lPv~~~nvin 153 (417)
T 3qn3_A 74 NETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIIN 153 (417)
T ss_dssp HTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHGGGCCEECEEEEEEEE
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeeeeeeec
Confidence 64 8999999999999999999987421 11101123699999999999999999999999999974 57888742 1
Q ss_pred -cC-----CCHHHH------HHHHHHHHHcC---CCEEeE---------ecCC---------ChhHHHHHH-HHHHHhC-
Q 015161 186 -PI-----VSPAEA------AELASKYRKQG---FTTLKL---------KVGK---------NLKEDIEVL-RAIRAVH- 230 (412)
Q Consensus 186 -~~-----~~~~~~------~~~~~~~~~~G---f~~~Ki---------KvG~---------~~~~D~~~v-~avr~~~- 230 (412)
+. .+.++. ++.++++++.| |+++|+ |+|. +.++|+++| +++|++|
T Consensus 154 GG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy 233 (417)
T 3qn3_A 154 GGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGY 233 (417)
T ss_dssp CGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTC
T ss_pred CcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 11 112221 23344455556 999987 6762 367899998 8999997
Q ss_pred -CCcEEEEeCCCC--------------CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 231 -PDSSFILDANEG--------------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 231 -~~~~l~vDaN~~--------------~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
|++.|++|+|++ |+++++++++++ +++|++ .|||||++++|++++++|++.+ ...+||++
T Consensus 234 ~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~e~~~~L~~~~--g~~ipI~g 309 (417)
T 3qn3_A 234 ENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI--CSIEDGLAENDFEGWIKLTEKL--GNKIQLVG 309 (417)
T ss_dssp TTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEESSSCTTCHHHHHHHHHHH--TTTSEEEE
T ss_pred CCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcce--eEEecCCCcccHHHHHHHHHhh--CCCCceec
Confidence 899999999986 579999999998 899987 5999999999999999998631 11599999
Q ss_pred CCCCCC-HHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccC
Q 015161 295 DESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGL 364 (412)
Q Consensus 295 dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~ 364 (412)
||++.+ +++++++++.+++|++|+|++++| +|++++++++|+++|+.+|+|++. ||..+..+.++++...
T Consensus 310 DE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~iadlava~~~ 382 (417)
T 3qn3_A 310 DDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNT 382 (417)
T ss_dssp STTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHHHHHHTTC
T ss_pred CCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHhCC
Confidence 999887 999999999999999999999998 999999999999999999988864 8877666655555533
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=362.70 Aligned_cols=301 Identities=19% Similarity=0.246 Sum_probs=239.1
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAM 108 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~ 108 (412)
..+|++|..+.+- +|.| .+++.|+|+|++|.+|+|.+++.. .|.++.+..++
T Consensus 2 ~~~i~~~~~r~i~--------dsrg----~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av 69 (428)
T 3tqp_A 2 TATITDINAHEIL--------DSRA----NPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAV 69 (428)
T ss_dssp CCCEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CceEEEEEEEEEE--------cCCC----CCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHH
Confidence 4478999988763 4444 388999999999999999765421 24445566677
Q ss_pred HHHH-HHhHHHcCCCCCCHHHHHHHHHhhcCC---CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC-CC---Ceee
Q 015161 109 VKAS-EACEVLKESPAMALGSVFGVVAGLLPG---HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VS---NTIT 180 (412)
Q Consensus 109 ~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g---~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg-~~---~~i~ 180 (412)
..++ .++|.|+|+|+.+++.+|+.|.+.... ..+ ..+|++||||||||+.||.+|+|||+|||| .. .++|
T Consensus 70 ~~v~~~iap~LiG~d~~~~~~i~~~m~~~dgt~~k~~l--g~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~~~pvp 147 (428)
T 3tqp_A 70 ENVNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANL--GANAILGVSLAVAYAAANNADLPLYRYLGGDGGPFSMPVP 147 (428)
T ss_dssp HHHHTHHHHHHTTCCTTCHHHHHHHHHHHHCCTTCTTT--CHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTCCCCBCEE
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHhcCcCCcCcc--chhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeE
Confidence 7665 489999999999999999999764211 111 236899999999999999999999999999 54 3667
Q ss_pred eceeecCC-------CHHH---------HHHHHHHHHHcCCCEEeEe---------cC------CChhHHHHH----HHH
Q 015161 181 TDITIPIV-------SPAE---------AAELASKYRKQGFTTLKLK---------VG------KNLKEDIEV----LRA 225 (412)
Q Consensus 181 ~~~~i~~~-------~~~~---------~~~~~~~~~~~Gf~~~KiK---------vG------~~~~~D~~~----v~a 225 (412)
+|.++... +.++ ..+++.++.++||+++|+| +| ++++.|.+. +++
T Consensus 148 ~~~~inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~~~~~~e~l~~i~~A 227 (428)
T 3tqp_A 148 MMNIINGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPDLPNNEAAFELILEA 227 (428)
T ss_dssp EEEEEECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHH
T ss_pred EEEEecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhcccccccccCCCCCcCCCcccHHHHHHHHHHH
Confidence 77654221 1122 4567778889999999988 55 344456665 689
Q ss_pred HHHh----CCCcEEEEeC--------------CCCCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 226 IRAV----HPDSSFILDA--------------NEGYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 226 vr~~----~~~~~l~vDa--------------N~~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
||++ |+++.|++|+ |++|++++|++++++ +++|++ .|||||++++|++++++|++.+
T Consensus 228 ir~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~eg~~~L~~~~-- 303 (428)
T 3tqp_A 228 IEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV--ISIEDGLSENDWAGWKLLTERL-- 303 (428)
T ss_dssp HHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHH--
T ss_pred HHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhccc--ceEeCCCCcccHHHHHHHHHhc--
Confidence 9997 3689999999 589999999999998 899987 5999999999999999998632
Q ss_pred ccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC-cchHHHHHHHHHHHcc
Q 015161 287 KFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAMGFAGHLSAG 363 (412)
Q Consensus 287 ~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~-~es~i~~~a~~hlaaa 363 (412)
...+||++|| +++++++++++++.+++|++|+|++++| +|++++++++|+++|+++|++++ .||..+..+.+|++..
T Consensus 304 ~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~iadLaVa~~ 383 (428)
T 3tqp_A 304 ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTIADLAVATD 383 (428)
T ss_dssp TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTT
T ss_pred CCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHHHHHHHHcC
Confidence 2347888898 6789999999999999999999999998 99999999999999999766554 5777776666666653
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-43 Score=353.81 Aligned_cols=302 Identities=16% Similarity=0.194 Sum_probs=230.6
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHHH
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (412)
|++|..+.+- .|.| .+.++|+|+|++| +|||+++... .|.++++..++..+
T Consensus 2 I~~v~~r~i~--------dsrg----~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v 68 (436)
T 2al1_A 2 VSKVYARSVY--------DSRG----NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNV 68 (436)
T ss_dssp CCEEEEEEEE--------CTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred eeEEEEEEEE--------cCCC----CcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHH
Confidence 6677777652 3444 3679999999999 9999976421 23445666777767
Q ss_pred HH-HhHHHc--CCCCCCHHHHHHHHHhhcC-CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC---Ceeee
Q 015161 112 SE-ACEVLK--ESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG---GVS---NTITT 181 (412)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~~-g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG---g~~---~~i~~ 181 (412)
++ +.|.|+ |+|+.+++.+|+.|.+... .+......+|++||||||||+.||.+|+|||+||| |.. +++|+
T Consensus 69 ~~~iap~Li~~G~d~~~~~~i~~~m~~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpv 148 (436)
T 2al1_A 69 NDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPV 148 (436)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeE
Confidence 65 899999 9999999999998875311 11001123699999999999999999999999999 864 46776
Q ss_pred ce--ee--cCC-----C---------HHHHHHHHHHHHHcCCCEEeE----e-------cC------CChhHHHHHHHHH
Q 015161 182 DI--TI--PIV-----S---------PAEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAI 226 (412)
Q Consensus 182 ~~--~i--~~~-----~---------~~~~~~~~~~~~~~Gf~~~Ki----K-------vG------~~~~~D~~~v~av 226 (412)
+. .+ +.. + ..+..+++.++.++||+++|. | +| ++++.|.++++.+
T Consensus 149 p~~n~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i 228 (436)
T 2al1_A 149 PFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLI 228 (436)
T ss_dssp EEEEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHH
T ss_pred EEEEeecCccccCCccccccceecCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHH
Confidence 43 22 100 0 012345556666778888873 3 43 2345566666655
Q ss_pred HH----hCC--CcEEEEeC----------------------CCCCCHHHHHHHH-HHHHcCCCCCceeecCCCCCCHHHH
Q 015161 227 RA----VHP--DSSFILDA----------------------NEGYKPQEAVEVL-EKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 227 r~----~~~--~~~l~vDa----------------------N~~~~~~~A~~~~-~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
++ +|+ ++.|++|+ |++|+++|+++++ +.+++|++ .|||||++++|++++
T Consensus 229 ~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i--~~iEdPl~~dD~~g~ 306 (436)
T 2al1_A 229 VDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAW 306 (436)
T ss_dssp HHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHH
T ss_pred HHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCc--EEEECCCCCcCHHHH
Confidence 54 365 79999999 4556889998775 45789987 599999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC-cchHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-VETRLAM 354 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~-~es~i~~ 354 (412)
++|++ ++.+||++||+. +++++++++++.+++|++|+|++++| +|++++++++|+++|+.++++++ .||.++.
T Consensus 307 ~~l~~----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~ 382 (436)
T 2al1_A 307 SHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTF 382 (436)
T ss_dssp HHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCH
T ss_pred HHHHh----cCCCeEEECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHH
Confidence 99985 578999999995 68999999999999999999999998 99999999999999999988654 5899988
Q ss_pred HHHHHHHccCCCCc
Q 015161 355 GFAGHLSAGLGCFK 368 (412)
Q Consensus 355 ~a~~hlaaa~~~~~ 368 (412)
.+.+|++++.++..
T Consensus 383 iA~lava~~~~~ik 396 (436)
T 2al1_A 383 IADLVVGLRTGQIK 396 (436)
T ss_dssp HHHHHHHTTCSEEE
T ss_pred HHHHHHHhcCCcCc
Confidence 89899988776543
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=348.95 Aligned_cols=302 Identities=17% Similarity=0.198 Sum_probs=230.4
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHHH
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (412)
|++|..+.+- .|.| .+.++|+|+|++|+ |||+++... .|.++++..++..+
T Consensus 2 I~~v~~r~i~--------dsrg----~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v 68 (439)
T 2akz_A 2 IEKIWAREIL--------DSRG----NPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHI 68 (439)
T ss_dssp CCEEEEEEEE--------CTTS----CEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred eeEEEEEEEE--------cCCC----CceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHH
Confidence 6777777652 3444 36799999999999 998775421 13445667777777
Q ss_pred HH-HhHHHc--CCCCCCHHHHHHHHHhhcC-CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC-Ceeeece
Q 015161 112 SE-ACEVLK--ESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG---GVS-NTITTDI 183 (412)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~~-g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG---g~~-~~i~~~~ 183 (412)
++ +.|.|+ |+|+.+++.+|+.|.+... .+......+|++||||||||+.||.+|+|||+||| |.. +++|+++
T Consensus 69 ~~~iap~Li~~G~d~~~~~~i~~~m~~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~ 148 (439)
T 2akz_A 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPA 148 (439)
T ss_dssp HHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEE
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEE
Confidence 65 899999 9999999999998876311 11001123699999999999999999999999999 864 4677653
Q ss_pred e--ec--C--------C------CHHHHHHHHHHHHHcCCCEEeE----e-------cC------CChhHHHHHHHHHHH
Q 015161 184 T--IP--I--------V------SPAEAAELASKYRKQGFTTLKL----K-------VG------KNLKEDIEVLRAIRA 228 (412)
Q Consensus 184 ~--i~--~--------~------~~~~~~~~~~~~~~~Gf~~~Ki----K-------vG------~~~~~D~~~v~avr~ 228 (412)
. +. . . ...+..+++.++.++||+++|. | +| ++++.|.+.++.+++
T Consensus 149 ~~~inGg~ha~~~~~~qefmi~p~~a~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ 228 (439)
T 2akz_A 149 FNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKE 228 (439)
T ss_dssp EEEEECGGGSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHH
T ss_pred EEEecCccccccccccccceecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHH
Confidence 2 21 0 0 0112245556666778888873 3 33 234556666666655
Q ss_pred ----hCC--CcEEEEeC---------------------CCCCCHHHHHHHHH-HHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 229 ----VHP--DSSFILDA---------------------NEGYKPQEAVEVLE-KLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 229 ----~~~--~~~l~vDa---------------------N~~~~~~~A~~~~~-~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
+|+ ++.|++|+ |+.|+++++++++. .+++|++ .|||||++++|++++++|
T Consensus 229 ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i--~~IEdPl~~dD~~g~~~L 306 (439)
T 2akz_A 229 AIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKF 306 (439)
T ss_dssp HHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHH
Confidence 254 79999999 44578899887755 5788986 699999999999999999
Q ss_pred HHHhhcccCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGFA 357 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~~~a~ 357 (412)
++ ++.+||++||+ ++++++++++++.+++|++|+|++++| +|++++++++|+++|+.+++++ +.||.++..+.
T Consensus 307 ~~----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~ 382 (439)
T 2akz_A 307 TA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIAD 382 (439)
T ss_dssp HH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHH
T ss_pred Hh----CCCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHH
Confidence 85 57899999998 579999999999999999999999998 9999999999999999988855 56899998898
Q ss_pred HHHHccCCCCc
Q 015161 358 GHLSAGLGCFK 368 (412)
Q Consensus 358 ~hlaaa~~~~~ 368 (412)
+|++++.+...
T Consensus 383 lava~~~~~ik 393 (439)
T 2akz_A 383 LVVGLCTGQIK 393 (439)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHhcCCccc
Confidence 99988776543
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=238.02 Aligned_cols=298 Identities=15% Similarity=0.207 Sum_probs=211.4
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAM 108 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~ 108 (412)
.|.|++|..+.+- .|+| .++|.|+|+|++|.. .+-++... .|.+-.+..++
T Consensus 5 ~m~I~~i~ar~il--------dsrG----nptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv 71 (441)
T 3qtp_A 5 SMSIQKVHAREIL--------DSRG----NPTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAV 71 (441)
T ss_dssp TTBCCEEEEEEEE--------CTTS----CEEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CcEEEEEEEEEEE--------CCCC----CEEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHH
Confidence 3678999988763 5555 378999999999976 55444321 12223355667
Q ss_pred HHHHH-HhHHHcCCCCCCHHHHHHHHHhhcCCCcchh-hhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC-Ceeee-
Q 015161 109 VKASE-ACEVLKESPAMALGSVFGVVAGLLPGHQFAS-QLKVRAAVEMALIDAVAKSVSMPLWRLFG---GVS-NTITT- 181 (412)
Q Consensus 109 ~~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~-~~~a~saId~Al~Dl~gk~~g~Pl~~LLG---g~~-~~i~~- 181 (412)
..+++ ++|.|+|+++.+.+.+.+.|.+.-....... ..+|+.||++|++.+.|+..|+|||++|| |.. ..+|+
T Consensus 72 ~~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP 151 (441)
T 3qtp_A 72 ENVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVP 151 (441)
T ss_dssp HHHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEE
T ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccc
Confidence 77765 8999999999999999888866421111100 12689999999999999999999999997 432 33443
Q ss_pred -ceee------------------cC--CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CCh---hHHHHH
Q 015161 182 -DITI------------------PI--VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNL---KEDIEV 222 (412)
Q Consensus 182 -~~~i------------------~~--~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~---~~D~~~ 222 (412)
...+ |. .+..+..+. .++..+. |.. -..+| +++ ++-++.
T Consensus 152 ~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~--~t~vgdEGgfap~~~~~~eaL~l 229 (441)
T 3qtp_A 152 CFNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQD--ATNVGDEGGFAPNVSGAREALDL 229 (441)
T ss_dssp EEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCSSHHHHHHH
T ss_pred eEeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc--cccccCCcccCCCCCCHHHHHHH
Confidence 2221 11 233332221 2222221 311 11233 333 344555
Q ss_pred H-HHHHHhC--CCcEEEEeCC---------C-----------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCC
Q 015161 223 L-RAIRAVH--PDSSFILDAN---------E-----------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 223 v-~avr~~~--~~~~l~vDaN---------~-----------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~ 272 (412)
+ ++|.++| .++.|.+|+. + .++++|++++.+. +++|++ .|||||++++
T Consensus 230 l~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI--~~IEDPl~~d 307 (441)
T 3qtp_A 230 LVEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPI--ASIEDPFAED 307 (441)
T ss_dssp HHHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCE--EEEESCSCTT
T ss_pred HHHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcce--eeecCCCChH
Confidence 4 5666665 5789999864 1 2467899998877 688986 6999999999
Q ss_pred CHHHHHHhHHHhhcccC-CeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC-c
Q 015161 273 DWEGLGHVSHIAKDKFG-VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM-V 348 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~-ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~-~ 348 (412)
||++|++|++ +++ +||++||+ ++++++++++++.+++|++++|++++| +|++++++++|+++|+.+|++++ .
T Consensus 308 D~eg~a~Lt~----~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsg 383 (441)
T 3qtp_A 308 DWAAWNKFTV----EHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSG 383 (441)
T ss_dssp CHHHHHHHHH----HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSS
T ss_pred HHHHHHHHHH----hcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 9999999986 454 99999997 678999999999999999999999998 99999999999999999998765 5
Q ss_pred chHHHHHHHHHHHcc
Q 015161 349 ETRLAMGFAGHLSAG 363 (412)
Q Consensus 349 es~i~~~a~~hlaaa 363 (412)
||..+..+.++++.+
T Consensus 384 ETeDt~iAdLAVal~ 398 (441)
T 3qtp_A 384 ETEDTFIADLVVGLN 398 (441)
T ss_dssp CCSCCHHHHHHHHTT
T ss_pred CccHhHHHHHHHHhC
Confidence 887766665555543
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=228.62 Aligned_cols=294 Identities=18% Similarity=0.231 Sum_probs=208.2
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (412)
+|++|..+.+- .|+| .++|.|+|+|++|.. .+-++... .|.+-.+..++..
T Consensus 3 ~I~~i~areil--------dSrG----npTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~ 69 (452)
T 3otr_A 3 VIKDIVAREIL--------DSRG----NPTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEI 69 (452)
T ss_dssp CCCEEEEEEEE--------CTTS----CEEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHH
T ss_pred cceEEEEEEEE--------cCCC----CEEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHH
Confidence 68888887763 4555 378999999999865 54443321 1222235566777
Q ss_pred HHH-HhHHHcCCCCCCHHHHHHHHH-hhc---------CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC---CCC
Q 015161 111 ASE-ACEVLKESPAMALGSVFGVVA-GLL---------PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG---GVS 176 (412)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~-~~~---------~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG---g~~ 176 (412)
+++ ++|.|+|.++.+...+.+.|. ..- .+... .+|+-||+||++.+.|+..|+|||++|| |..
T Consensus 70 vn~~Iap~Lig~d~~dQ~~iD~~m~~~lDgT~n~~~~~ks~lG---aNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~ 146 (452)
T 3otr_A 70 VRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLG---ANAILGVSIACCRAGAASKGLPLYKYIATLAGKT 146 (452)
T ss_dssp HHHTHHHHHTTCCTTCHHHHHHHHHHTTTCCEETTEECCTTTC---HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCChHhHHHHHHHHHHHhcCCCCcccccccccC---cchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCC
Confidence 755 899999999999999998887 321 11222 3689999999999999999999999998 433
Q ss_pred ---Ceeeec--eee------------------cC--CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CCh
Q 015161 177 ---NTITTD--ITI------------------PI--VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNL 216 (412)
Q Consensus 177 ---~~i~~~--~~i------------------~~--~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~ 216 (412)
..+|+. ..+ |. .+..+..+. .++..+. |.. -..+| +++
T Consensus 147 ~~~~~lPvP~~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~--~t~vgDEGgfap~~ 224 (452)
T 3otr_A 147 IDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLD--ATNVGDEGGFAPNV 224 (452)
T ss_dssp SSSEEECEECEEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCC
T ss_pred CcceecccceEEEecCcccCCCCCCcCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCc--ccccccccccCCCC
Confidence 234432 111 11 233332222 2222221 321 11233 333
Q ss_pred ---hHHHHHH-HHHHHhC--CCcEEEEeCCC------------------------CCCHHHHHHHHHH-HHcCCCCCcee
Q 015161 217 ---KEDIEVL-RAIRAVH--PDSSFILDANE------------------------GYKPQEAVEVLEK-LYEMGVTPVLF 265 (412)
Q Consensus 217 ---~~D~~~v-~avr~~~--~~~~l~vDaN~------------------------~~~~~~A~~~~~~-l~~~~l~~~~i 265 (412)
++-++.| ++|.++| .++.|.+|+.. .+|++|++++++. +++|++ .||
T Consensus 225 ~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypI--v~I 302 (452)
T 3otr_A 225 ATAEEALNLLVEAIKAAGYEGKIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI--ISV 302 (452)
T ss_dssp CSHHHHHHHHHHHHHHHTCTTTSEEEEECCGGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCE--EEE
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEccccchHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCc--eEE
Confidence 3445544 5666675 47889888631 2478999999977 688986 699
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
|||++++||+++++|++.+ ...+||++||+ +++++++++.++.+++|++++|++++| +|++++++++|+++|+.+|
T Consensus 303 EDPl~~dD~eg~a~Lt~~l--g~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vm 380 (452)
T 3otr_A 303 EDPFDQDDFASFSAFTKDV--GEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQ 380 (452)
T ss_dssp ECCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEE
T ss_pred ecCCChhhHHHHHHHHHhh--CCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEE
Confidence 9999999999999998632 12399999997 678999999999999999999999998 9999999999999999999
Q ss_pred EccC-cchHHHHHHHHHHHccC
Q 015161 344 IGGM-VETRLAMGFAGHLSAGL 364 (412)
Q Consensus 344 ~~~~-~es~i~~~a~~hlaaa~ 364 (412)
+++. .||.-... +|||.++
T Consensus 381 vshrSGETeD~~i--AdLaVgl 400 (452)
T 3otr_A 381 VSHRSGETEDSFI--ADLVVGL 400 (452)
T ss_dssp EECCSSCCSCCHH--HHHHHHT
T ss_pred EeCCCCCCchhHH--HHHHHHc
Confidence 9875 47765444 4555554
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-06 Score=82.00 Aligned_cols=120 Identities=18% Similarity=0.301 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHh-CCCc--EEEEeCC----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDS--SFILDAN---- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~-~~~~--~l~vDaN---- 240 (412)
..+.++++.+.||..++|+.+. +++. -.+.+++||++ +++. .+++..+
T Consensus 154 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~ 233 (349)
T 3hgj_A 154 FVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGE 233 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCST
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccC
Confidence 4666777888999999999762 1222 25778999997 6674 4556665
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCC------------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPV------------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 308 (412)
++|+.++++++++.|++.++. ||+-.. +..+++..+++++ .+++||.+...+++.+++.+++
T Consensus 234 ~g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~e~a~~~l 307 (349)
T 3hgj_A 234 GGWSLEDTLAFARRLKELGVD--LLDCSSGGVVLRVRIPLAPGFQVPFADAVRK----RVGLRTGAVGLITTPEQAETLL 307 (349)
T ss_dssp TSCCHHHHHHHHHHHHHTTCC--EEEEECCCSCSSSCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCcCcccccCCCccccHHHHHHHHH----HcCceEEEECCCCCHHHHHHHH
Confidence 389999999999999999975 888653 1134555555553 5689999999999999999999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
+.+.+|.+.+
T Consensus 308 ~~G~aD~V~i 317 (349)
T 3hgj_A 308 QAGSADLVLL 317 (349)
T ss_dssp HTTSCSEEEE
T ss_pred HCCCceEEEe
Confidence 9999999865
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=77.78 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHhC-CCcEEEEeC----CC
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAVH-PDSSFILDA----NE 241 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~~-~~~~l~vDa----N~ 241 (412)
+..+.++.+.+.||..++|+.+. +++ --.+.+++||++. ..+.+++.. ++
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~ 224 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 224 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC
Confidence 44666778888999999999762 122 2367889999975 223444444 45
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceee--------c--CCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFE--------Q--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iE--------e--P~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
+|+.++++++++.|++.++. ||+ + |..+ .+++..+++++ .+++||.+...+.+.+++.++++.
T Consensus 225 g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~s~~~a~~~l~~ 298 (338)
T 1z41_A 225 GLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIRE----QADMATGAVGMITDGSMAEEILQN 298 (338)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCccccCCCCCCccchHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHc
Confidence 89999999999999999975 887 2 3332 34555666654 568999999999999999999999
Q ss_pred CCCCEEEe
Q 015161 311 NLADVINI 318 (412)
Q Consensus 311 ~a~d~v~i 318 (412)
+.+|.+.+
T Consensus 299 G~aD~V~i 306 (338)
T 1z41_A 299 GRADLIFI 306 (338)
T ss_dssp TSCSEEEE
T ss_pred CCceEEee
Confidence 99999865
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-05 Score=83.33 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHh-CCCcEE--EEeC---
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDSSF--ILDA--- 239 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~-~~~~~l--~vDa--- 239 (412)
++..+.++++.+.||..++++.+. +++. -.+.+++||++ ++++.+ ++..
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 345667778888999999998752 1222 36788999997 777655 3333
Q ss_pred -CCCCCHHHHHHHHHHHHcCCCCCceee-------cCCC--------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH
Q 015161 240 -NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH--------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303 (412)
Q Consensus 240 -N~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP~~--------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 303 (412)
+++|+.++++++++.|++.++. ||+ ++.+ ...++..+++ ++.+++||.+...++++++
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~iPvi~~Ggi~~~~~ 294 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKL----KGHVSLPLVTTNRINDPQV 294 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHH----TTSCSSCEEECSSCCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCC--EEEcCCCccccccccccccCCcchHHHHHHHH----HHhcCceEEEeCCCCCHHH
Confidence 4589999999999999999975 885 4333 1223434444 4578999999999999999
Q ss_pred HHHHHHcCCCCEEEe
Q 015161 304 VKKIVKGNLADVINI 318 (412)
Q Consensus 304 ~~~~i~~~a~d~v~i 318 (412)
+.++++.+.+|.+.+
T Consensus 295 a~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 295 ADDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCCEEEe
Confidence 999999999999864
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-05 Score=76.92 Aligned_cols=119 Identities=8% Similarity=0.111 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-HcCCCEEeEecCC-----------------------ChhH----HHHHHHHHHHh-CCC-cEEEEeCC-
Q 015161 192 EAAELASKYR-KQGFTTLKLKVGK-----------------------NLKE----DIEVLRAIRAV-HPD-SSFILDAN- 240 (412)
Q Consensus 192 ~~~~~~~~~~-~~Gf~~~KiKvG~-----------------------~~~~----D~~~v~avr~~-~~~-~~l~vDaN- 240 (412)
+.++.++.++ +.||..++|+.+. +++. -.+.+++||++ +++ +.+++..+
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 3456677778 8999999998752 2222 24678999997 644 45555543
Q ss_pred ------CCCCHHHHHHHHHHHHcCCCCCceeecCCCC-----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHH
Q 015161 241 ------EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 ------~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~-----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 309 (412)
++|+.++++++++.|+++++. |||.+... ...+ .++++ +.+++||.+.+.+ +.+++.++++
T Consensus 255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~~-~~~ir----~~~~iPvi~~G~i-t~~~a~~~l~ 326 (379)
T 3aty_A 255 GVHGMIDSNPEALTKHLCKKIEPLSLA--YLHYLRGDMVNQQIGDV-VAWVR----GSYSGVKISNLRY-DFEEADQQIR 326 (379)
T ss_dssp CGGGCCCSCHHHHHHHHHHHHGGGCCS--EEEEECSCTTSCCCCCH-HHHHH----TTCCSCEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCC--EEEEcCCCcCCCCccHH-HHHHH----HHCCCcEEEECCC-CHHHHHHHHH
Confidence 478899999999999999985 99987632 1123 45554 4678999999998 9999999999
Q ss_pred cCCCCEEEe
Q 015161 310 GNLADVINI 318 (412)
Q Consensus 310 ~~a~d~v~i 318 (412)
.+.+|.|.+
T Consensus 327 ~g~aD~V~i 335 (379)
T 3aty_A 327 EGKVDAVAF 335 (379)
T ss_dssp TTSCSEEEE
T ss_pred cCCCeEEEe
Confidence 999999865
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-05 Score=74.72 Aligned_cols=121 Identities=13% Similarity=0.215 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 240 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~-~~l~vDaN--- 240 (412)
++..+.|+++++.||..++|..+. +++ --.+.+++||++ +++ +.+++-.+
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 455677778888999999998752 122 235678999997 554 34444433
Q ss_pred -----CCCCHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHH
Q 015161 241 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 -----~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 309 (412)
++++.++++++++.|++.++. ||+-... ..+++..++++ +.+++||++...+ +.+++.++++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~v~----~~~~iPvi~~Ggi-t~~~a~~~l~ 313 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVR----ERFHGVIIGAGAY-TAEKAEDLIG 313 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC--EEEEecCcccCCCcccHHHHHHHH----HHCCCCEEEECCc-CHHHHHHHHH
Confidence 355788999999999999975 9987652 23455455555 3678999999998 8999999999
Q ss_pred cCCCCEEEe
Q 015161 310 GNLADVINI 318 (412)
Q Consensus 310 ~~a~d~v~i 318 (412)
.+.+|+|.+
T Consensus 314 ~g~aD~V~~ 322 (364)
T 1vyr_A 314 KGLIDAVAF 322 (364)
T ss_dssp TTSCSEEEE
T ss_pred CCCccEEEE
Confidence 999999855
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=77.24 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC----
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN---- 240 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l~vDaN---- 240 (412)
++.++.|+++++.||..++|+.+. +++ --.+.+++||++ +++ .+.++.+
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~ 245 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAH 245 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEeccccc
Confidence 455777788889999999998752 122 236678999997 655 4555543
Q ss_pred -----CCCCHHHHHHHHHHHHcCCCCCceeecCCCC--------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 241 -----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 241 -----~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
..++.++++++++.|+++++. |||-.... .+++..++++ +..++||++...+ +.+++.++
T Consensus 246 ~~g~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~vr----~~~~iPvi~~G~i-~~~~a~~~ 318 (376)
T 1icp_A 246 YNEAGDTNPTALGLYMVESLNKYDLA--YCHVVEPRMKTAWEKIECTESLVPMR----KAYKGTFIVAGGY-DREDGNRA 318 (376)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCS--EEEEECCSCCC------CCCCSHHHH----HHCCSCEEEESSC-CHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcccCCCCccccHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHH
Confidence 345678899999999999985 99875431 1233334454 4678999999998 89999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|.|.+
T Consensus 319 l~~g~aD~V~~ 329 (376)
T 1icp_A 319 LIEDRADLVAY 329 (376)
T ss_dssp HHTTSCSEEEE
T ss_pred HHCCCCcEEee
Confidence 99999999865
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-05 Score=74.66 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHh-CCCc--EEEEeCCC---
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDS--SFILDANE--- 241 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~-~~~~--~l~vDaN~--- 241 (412)
..+.++++++.||..++|+.+. +++. -.+.+++||++ ++++ .+++..+.
T Consensus 160 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~ 239 (363)
T 3l5l_A 160 FVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG 239 (363)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC
Confidence 3556677788999999999751 2222 25678999997 6664 44444432
Q ss_pred -C-CCHHHHHHHHHHHHcCCCCCceeecCC-----------CC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 242 -G-YKPQEAVEVLEKLYEMGVTPVLFEQPV-----------HR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 242 -~-~~~~~A~~~~~~l~~~~l~~~~iEeP~-----------~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
+ |+.++++++++.|++.++. ||+-.. .+ .+++..++++ +..++||.+...+.+.+++.++
T Consensus 240 ~G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~GgI~s~e~a~~~ 313 (363)
T 3l5l_A 240 RDEQTLEESIELARRFKAGGLD--LLSVSVGFTIPDTNIPWGPAFMGPIAERVR----REAKLPVTSAWGFGTPQLAEAA 313 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC--EEEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCCEEECSSTTSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEEecCccccccccCCCcchhHHHHHHHH----HHcCCcEEEeCCCCCHHHHHHH
Confidence 3 8899999999999999975 887432 11 2444455554 3568999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|.|.+
T Consensus 314 l~~G~aD~V~i 324 (363)
T 3l5l_A 314 LQANQLDLVSV 324 (363)
T ss_dssp HHTTSCSEEEC
T ss_pred HHCCCccEEEe
Confidence 99999999854
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.8e-05 Score=72.40 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCCEEeEecC---------------------CChh----HHHHHHHHHHHh-CCCcEE--EEeCC----
Q 015161 193 AAELASKYRKQGFTTLKLKVG---------------------KNLK----EDIEVLRAIRAV-HPDSSF--ILDAN---- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~~----~D~~~v~avr~~-~~~~~l--~vDaN---- 240 (412)
..+.|+++.+.||..+.|..+ .+++ --.+.+++||++ ++++.+ ++-.+
T Consensus 145 f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~ 224 (343)
T 3kru_A 145 FGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME 224 (343)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST
T ss_pred HHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc
Confidence 355667778899999999943 1222 225778999997 666444 44443
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCC----------C-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPV----------H-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~----------~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 309 (412)
++|+.++++++++.|++. +. ||+-.. . ..+++..++++ +..++||.+...+++++++.++++
T Consensus 225 ~g~~~~~~~~~a~~l~~~-vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~e~Ae~~l~ 297 (343)
T 3kru_A 225 GGINIDMMVEYINMIKDK-VD--LIDVSSGGLLNVDINLYPGYQVKYAETIK----KRCNIKTSAVGLITTQELAEEILS 297 (343)
T ss_dssp TSCCHHHHHHHHHHHTTT-CS--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCEEEEESSCCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhcc-cc--EEeccCCceEeeeecccCceeehHHHHHH----HhcCcccceeeeeeHHHHHHHHHh
Confidence 478999999999999998 74 888631 1 22444445554 357899999999999999999999
Q ss_pred cCCCCEEEe
Q 015161 310 GNLADVINI 318 (412)
Q Consensus 310 ~~a~d~v~i 318 (412)
.+.+|.|.+
T Consensus 298 ~G~aD~V~i 306 (343)
T 3kru_A 298 NERADLVAL 306 (343)
T ss_dssp TTSCSEEEE
T ss_pred chhhHHHHH
Confidence 999999854
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00072 Score=66.50 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 240 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~-~~l~vDaN--- 240 (412)
++.++.++.+.+.||..++|+.+. +++ --.+.+++||++ +++ +.+++-.+
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 345666777788999999998742 122 235678999997 554 34444432
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 241 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 241 ----~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
++++.++++++++.|++.++. ||+-... ...++..++++ +.+++||.+...+ +.+++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~i~----~~~~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIV--YLHIAEVDWDDAPDTPVSFKRALR----EAYQGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCCCccHHHHHHHH----HHCCCcEEEeCCC-CHHHHHHHHHC
Confidence 456889999999999999975 8876432 12344445554 4678999998888 89999999999
Q ss_pred CCCCEEEe
Q 015161 311 NLADVINI 318 (412)
Q Consensus 311 ~a~d~v~i 318 (412)
+.+|.|.+
T Consensus 314 g~aD~V~i 321 (365)
T 2gou_A 314 GLADMIGF 321 (365)
T ss_dssp TSCSEEEC
T ss_pred CCcceehh
Confidence 99999854
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00075 Score=66.66 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCC---
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDAN--- 240 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~-~~l~vDaN--- 240 (412)
++.++.|+.+++.||..++|+.+. +++ --.+.+++||++ +++ +.+++-.+
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 445667777888999999998752 122 235678999997 654 44444332
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCCCceeecCCC------C-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHH
Q 015161 241 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------R-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 ----~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~------~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~ 309 (412)
.+|+.++++++++.|++.++. ||+-... + .+++..++++ +..++||.+...+ +.+++.++++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLA--YLHFNEPDWIGGDITYPEGFREQMR----QRFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCC------CCCTTHHHHHH----HHCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCcccCCCCcchHHHHHHHH----HHCCCCEEEECCC-CHHHHHHHHH
Confidence 467889999999999999974 8875321 1 1344445554 3678999998888 6999999999
Q ss_pred cCCCCEEEe
Q 015161 310 GNLADVINI 318 (412)
Q Consensus 310 ~~a~d~v~i 318 (412)
.+.+|.|.+
T Consensus 319 ~g~aD~V~i 327 (377)
T 2r14_A 319 DNTADAVAF 327 (377)
T ss_dssp TTSCSEEEE
T ss_pred CCCceEEee
Confidence 999999865
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.001 Score=65.20 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCCC---
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDANE--- 241 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~-~~l~vDaN~--- 241 (412)
+.++.++++++.||..++|..+. +++ --.+.+++||++ +++ +.+++-.+.
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~ 241 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAH 241 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccC
Confidence 34666778888999999999762 122 235788999997 654 445554442
Q ss_pred ----CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 242 ----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 242 ----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
.++.++++++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.+.+|.|.
T Consensus 242 g~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~ 314 (361)
T 3gka_A 242 TMGDSDPAATFGHVARELGRRRIA--FLFARESFGGDAIGQQLK----AAFGGPFIVNENF-TLDSAQAALDAGQADAVA 314 (361)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCCSTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHH----HHcCCCEEEeCCC-CHHHHHHHHHcCCccEEE
Confidence 23367899999999999985 898655432112234444 3567899887777 999999999999999985
Q ss_pred e
Q 015161 318 I 318 (412)
Q Consensus 318 i 318 (412)
+
T Consensus 315 i 315 (361)
T 3gka_A 315 W 315 (361)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=65.02 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCC-cEEEEeCCCC---
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPD-SSFILDANEG--- 242 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~-~~l~vDaN~~--- 242 (412)
.++.|+++++.||..++|..+. +++ --.+.+++||++ +++ +.+++-.+..
T Consensus 155 f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g 234 (362)
T 4ab4_A 155 YRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHD 234 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccc
Confidence 4566777888999999999762 122 235678999997 554 4444544321
Q ss_pred ----CCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 243 ----YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 243 ----~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.++++++++.|++.++. ||+-.......+..++++ +..++||.+...+ +++++.++++.+.+|.|.+
T Consensus 235 ~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik----~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 235 MGDADRAETFTYVARELGKRGIA--FICSREREADDSIGPLIK----EAFGGPYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHH----HHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHhCCC--EEEECCCCCCHHHHHHHH----HHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 2367899999999999985 888654432112234444 3567899887777 9999999999999999854
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0026 Score=61.90 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------ChhHH----HHHHHHHHHhC-CCcEEEEeCC----CC
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLKED----IEVLRAIRAVH-PDSSFILDAN----EG 242 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~D----~~~v~avr~~~-~~~~l~vDaN----~~ 242 (412)
..+.|+.+.+.||..+.|+.+. +++.. .+.+++||++. -.+.+++-.+ ++
T Consensus 146 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g 225 (340)
T 3gr7_A 146 FQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDG 225 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTS
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCC
Confidence 4566677788899999999761 12222 56789999974 2355566655 47
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecC--------C--CC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQP--------V--HR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP--------~--~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
|+.++.+++++.|++.++. ||+-- . .+ .+++-.++++ +..++||.+.-.+.+.+++.++++.+
T Consensus 226 ~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~iPVi~~GgI~s~e~a~~~L~~G 299 (340)
T 3gr7_A 226 LTAKDYVPYAKRMKEQGVD--LVDVSSGAIVPARMNVYPGYQVPFAELIR----READIPTGAVGLITSGWQAEEILQNG 299 (340)
T ss_dssp CCGGGHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHTTCCEEEESSCCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEEecCCccCCCCCCCccccHHHHHHHH----HHcCCcEEeeCCCCCHHHHHHHHHCC
Confidence 8999999999999999875 77631 1 11 2344445554 35789999999999999999999999
Q ss_pred CCCEEEe
Q 015161 312 LADVINI 318 (412)
Q Consensus 312 a~d~v~i 318 (412)
.+|.|.+
T Consensus 300 ~aD~V~i 306 (340)
T 3gr7_A 300 RADLVFL 306 (340)
T ss_dssp SCSEEEE
T ss_pred CeeEEEe
Confidence 8999865
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0015 Score=64.94 Aligned_cols=124 Identities=11% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHh-CCCcEEEEeCC----
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAV-HPDSSFILDAN---- 240 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~-~~~~~l~vDaN---- 240 (412)
++.++.|+.+++.||..+.|..+. +++. -.+.+++||++ +++ .+.+..+
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~-~V~vRls~~~~ 249 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD-RVGVRVSPAID 249 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCC-cEEEEeccccc
Confidence 345667778888999999999851 2222 35678999997 544 3444322
Q ss_pred -----CCCCHHHHHHHHHHHHcCC------CCCceeec--------CCCCC-C--HH-HHHHhHHHhhcccCCeEEeCCC
Q 015161 241 -----EGYKPQEAVEVLEKLYEMG------VTPVLFEQ--------PVHRD-D--WE-GLGHVSHIAKDKFGVSVAADES 297 (412)
Q Consensus 241 -----~~~~~~~A~~~~~~l~~~~------l~~~~iEe--------P~~~~-d--~~-~~~~l~~~~~~~~~ipIa~dEs 297 (412)
.+++.++++++++.|++.+ +. ||+- +..+. . -. ....+.+.+++..++||.+...
T Consensus 250 ~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~ 327 (402)
T 2hsa_B 250 HLDAMDSNPLSLGLAVVERLNKIQLHSGSKLA--YLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGG 327 (402)
T ss_dssp STTCCCSCHHHHHHHHHHHHHHHHHHHTSCCS--EEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESS
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCccCCceE--EEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCC
Confidence 3456789999999999988 74 6653 11110 0 00 0112222334567899999888
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015161 298 CRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ +.+++.++++.+.+|.|.+
T Consensus 328 i-~~~~a~~~l~~g~aD~V~i 347 (402)
T 2hsa_B 328 Y-TRELGIEAVAQGDADLVSY 347 (402)
T ss_dssp C-CHHHHHHHHHTTSCSEEEE
T ss_pred C-CHHHHHHHHHCCCCceeee
Confidence 8 9999999999999999865
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.014 Score=55.98 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=95.1
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+...+...+|+++.+.++.+.+. |..+.+.+|. +++.-.+.+++++++.+ +.+.+..+.+|
T Consensus 60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~G~ 137 (318)
T 1vhn_A 60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRLGW 137 (318)
T ss_dssp TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEESCS
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecCCC
Confidence 344444455788888888888888 9999999872 23445567888888743 67777777789
Q ss_pred CHHHHHHHHHHHHcCCCCCcee-------ecCC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLF-------EQPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~i-------EeP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
+.++..++++.+++.|+. +| ++-. .+-+++..++++ + ++||.++-.+.+.+++.++++...+|.
T Consensus 138 ~~~~~~~~a~~l~~~G~d--~i~v~g~~~~~~~~~~~~~~~i~~i~-----~-~ipVi~~GgI~s~~da~~~l~~~gad~ 209 (318)
T 1vhn_A 138 EKNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVLE-----K-RIPTFVSGDIFTPEDAKRALEESGCDG 209 (318)
T ss_dssp SSCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGSC-----C-SSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred ChHHHHHHHHHHHHhCCC--EEEEcCCCccccCCCCcCHHHHHHHH-----c-CCeEEEECCcCCHHHHHHHHHcCCCCE
Confidence 877667899999999875 55 2321 223455455443 3 899999999999999999998555899
Q ss_pred EEecC
Q 015161 316 INIKL 320 (412)
Q Consensus 316 v~ik~ 320 (412)
+++=-
T Consensus 210 V~iGR 214 (318)
T 1vhn_A 210 LLVAR 214 (318)
T ss_dssp EEESG
T ss_pred EEECH
Confidence 87753
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.021 Score=54.42 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=91.2
Q ss_pred eceeecCCCHHHHHHHHHHHHHcCCC-EEeEecC-----------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 015161 181 TDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 248 (412)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~Gf~-~~KiKvG-----------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A 248 (412)
+..++...++++..+.++.+.+.||. .+-+.++ .+++.-.+.++++|++. ++.+.+-.+..|+.++.
T Consensus 96 ~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~~ 174 (311)
T 1jub_A 96 IFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHF 174 (311)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHH
Confidence 33445556788888989999899999 8999875 13444456677777753 44555555555888888
Q ss_pred HHHHHHHHcCCCCCcee------------e----cCCCC---------------CCHHHHHHhHHHhhccc--CCeEEeC
Q 015161 249 VEVLEKLYEMGVTPVLF------------E----QPVHR---------------DDWEGLGHVSHIAKDKF--GVSVAAD 295 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~i------------E----eP~~~---------------~d~~~~~~l~~~~~~~~--~ipIa~d 295 (412)
.++++.+++.++. +| + .|... ..++..+++ ++.. ++||.+.
T Consensus 175 ~~~a~~~~~~G~d--~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v----~~~~~~~ipvi~~ 248 (311)
T 1jub_A 175 DIMAEILNQFPLT--YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF----YTRLKPEIQIIGT 248 (311)
T ss_dssp HHHHHHHTTSCCC--EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH----HTTSCTTSEEEEE
T ss_pred HHHHHHHHHcCCc--EEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHH----HHhcCCCCCEEEE
Confidence 8999999998874 43 2 11100 012333333 3456 7999999
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEec
Q 015161 296 ESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 296 Es~~~~~~~~~~i~~~a~d~v~ik 319 (412)
=-+.+.+|+.+++..| +|.+++=
T Consensus 249 GGI~~~~da~~~l~~G-Ad~V~vg 271 (311)
T 1jub_A 249 GGIETGQDAFEHLLCG-ATMLQIG 271 (311)
T ss_dssp SSCCSHHHHHHHHHHT-CSEEEEC
T ss_pred CCCCCHHHHHHHHHcC-CCEEEEc
Confidence 9999999999999888 7998763
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.071 Score=51.83 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=91.6
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 240 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~-~~~l~vDaN 240 (412)
|+...+...+|+++.+.++.+.+.||..|-+.+|. +++.-.+.+++++++. | .+++++...
T Consensus 59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~ 138 (350)
T 3b0p_A 59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE 138 (350)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence 44455555678888888888888999999999872 1233345678888763 2 123343333
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecC-------------CCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQP-------------VHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP-------------~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~ 306 (412)
...+.++..++++.+++.|+...-+..- .++.+++..+++++ .. ++||.+.=.+.+.+++.+
T Consensus 139 ~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~----~~~~iPVianGgI~s~eda~~ 214 (350)
T 3b0p_A 139 GKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKG----DFPQLTFVTNGGIRSLEEALF 214 (350)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHH----HCTTSEEEEESSCCSHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHH----hCCCCeEEEECCcCCHHHHHH
Confidence 3445678899999999988752222211 12236666677654 45 799999889999999999
Q ss_pred HHHcCCCCEEEe
Q 015161 307 IVKGNLADVINI 318 (412)
Q Consensus 307 ~i~~~a~d~v~i 318 (412)
+++ | +|.+++
T Consensus 215 ~l~-G-aD~V~i 224 (350)
T 3b0p_A 215 HLK-R-VDGVML 224 (350)
T ss_dssp HHT-T-SSEEEE
T ss_pred HHh-C-CCEEEE
Confidence 997 6 899875
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.12 Score=54.85 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCCEEeEecC----------------------CChh----HHHHHHHHHHHh-CCC--cEEEEeCC--
Q 015161 192 EAAELASKYRKQGFTTLKLKVG----------------------KNLK----EDIEVLRAIRAV-HPD--SSFILDAN-- 240 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~----~D~~~v~avr~~-~~~--~~l~vDaN-- 240 (412)
+..+.|+.+.+.||..+.|+.+ .+++ --.+.+++||++ +++ +.+++-.+
T Consensus 157 ~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~ 236 (690)
T 3k30_A 157 WHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEE 236 (690)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 3466677788899999999754 2233 235678999997 766 45566444
Q ss_pred --CCCCHHHHHHHHHHHHcCCCCCceee-------cC-C----CC--CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHH
Q 015161 241 --EGYKPQEAVEVLEKLYEMGVTPVLFE-------QP-V----HR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP-~----~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 304 (412)
++|+.++++++++.|++ ++. +++ ++ . .+ .+++..+++ ++..++||.+--.+.++++.
T Consensus 237 ~~~g~~~~~~~~~~~~l~~-~~d--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~~~a 309 (690)
T 3k30_A 237 IDGGITREDIEGVLRELGE-LPD--LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGL----KKLTTKPVVGVGRFTSPDAM 309 (690)
T ss_dssp STTSCCHHHHHHHHHHHTT-SSS--EEEEECSCHHHHTCCTTTCCTTTTHHHHTTS----GGGCSSCEEECSCCCCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh-hcC--EEEEecccccccCCCCccCCccccHHHHHHH----HHHcCCeEEEeCCCCCHHHH
Confidence 58899999999999988 442 432 11 1 11 112223333 45678999998899999999
Q ss_pred HHHHHcCCCCEEEe
Q 015161 305 KKIVKGNLADVINI 318 (412)
Q Consensus 305 ~~~i~~~a~d~v~i 318 (412)
.++++.+.+|.+.+
T Consensus 310 ~~~l~~g~~d~v~~ 323 (690)
T 3k30_A 310 VRQIKAGILDLIGA 323 (690)
T ss_dssp HHHHHTTSCSEEEE
T ss_pred HHHHHCCCcceEEE
Confidence 99999999999864
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.063 Score=57.41 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEE--EEeC---
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSF--ILDA--- 239 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l--~vDa--- 239 (412)
++.++.|+.+++.||..+.|..+. +++ --.+.+++||++ ++++.+ ++-.
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 345666777888999999998752 122 235678999997 777533 3322
Q ss_pred --CCCCC-HHHHHHHHHHHHcCCCCCc---------eeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCH
Q 015161 240 --NEGYK-PQEAVEVLEKLYEMGVTPV---------LFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSL 301 (412)
Q Consensus 240 --N~~~~-~~~A~~~~~~l~~~~l~~~---------~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~ 301 (412)
.++|+ .++++++++.|++. +... |-+...++ .+++..+++ ++..++||.+.-.+.++
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~ 303 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLV----KQVSKKPVLGVGRYTDP 303 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHH----HTTCSSCEECCSCCCCH
T ss_pred cCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHH----HHHCCCEEEEeCCCCCH
Confidence 25788 68899999999873 2200 21221221 123333344 35689999999999999
Q ss_pred HHHHHHHHcCCCCEEEe
Q 015161 302 DDVKKIVKGNLADVINI 318 (412)
Q Consensus 302 ~~~~~~i~~~a~d~v~i 318 (412)
+++.++++.+.+|.+.+
T Consensus 304 ~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCCCEEEe
Confidence 99999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.028 Score=53.69 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=91.9
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCC---EEeEecC-----------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFT---TLKLKVG-----------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~---~~KiKvG-----------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~ 245 (412)
|+..++...++++..+.++.+.+.||. .+-+.++ .+++.-.+.++++|++. ++.+.+-....|+.
T Consensus 95 p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~~ 173 (314)
T 2e6f_A 95 PLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFDI 173 (314)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCCH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCH
Confidence 444455556788888888888888999 8988775 13444456788888863 34566665666888
Q ss_pred HHHHHHHHHHHcCC-CCCceee----------------cCCC---------------CCCHHHHHHhHHHhhccc-CCeE
Q 015161 246 QEAVEVLEKLYEMG-VTPVLFE----------------QPVH---------------RDDWEGLGHVSHIAKDKF-GVSV 292 (412)
Q Consensus 246 ~~A~~~~~~l~~~~-l~~~~iE----------------eP~~---------------~~d~~~~~~l~~~~~~~~-~ipI 292 (412)
++..++++.+++.+ +. +|- .|.. +..++..++++ +.. ++||
T Consensus 174 ~~~~~~a~~~~~aG~~d--~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~----~~~~~ipv 247 (314)
T 2e6f_A 174 AHFDTAAAVLNEFPLVK--FVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY----RRCPDKLV 247 (314)
T ss_dssp HHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH----HHCTTSEE
T ss_pred HHHHHHHHHHHhcCCce--EEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH----HhcCCCCE
Confidence 89889999999988 63 442 1110 00133344443 355 8999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 293 AADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 293 a~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+.=-+.+.+++.+++..| +|.+++
T Consensus 248 i~~GGI~~~~da~~~l~~G-Ad~V~i 272 (314)
T 2e6f_A 248 FGCGGVYSGEDAFLHILAG-ASMVQV 272 (314)
T ss_dssp EEESSCCSHHHHHHHHHHT-CSSEEE
T ss_pred EEECCCCCHHHHHHHHHcC-CCEEEE
Confidence 9999999999999999888 788865
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.14 Score=49.19 Aligned_cols=121 Identities=11% Similarity=0.078 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeEecCC----------ChhHHHHHHHHHHHh--------CCCcEEEEeCCCCCCHHHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKVGK----------NLKEDIEVLRAIRAV--------HPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~~~D~~~v~avr~~--------~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
+++..+.++.+.+ |+..+-+.++. +.+.-.+.+++||++ ++++.+.+--+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 5666666666544 99999998862 122334567777775 3478888888888999999999
Q ss_pred HHHHHcCCCCCceeec-------------CCCCC------------CHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHH
Q 015161 252 LEKLYEMGVTPVLFEQ-------------PVHRD------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDV 304 (412)
Q Consensus 252 ~~~l~~~~l~~~~iEe-------------P~~~~------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~ 304 (412)
++.+++.|+. +|.= |.... .++..++++ +.. ++||.+.=-+.+.+|+
T Consensus 231 a~~l~~~Gvd--~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~----~~~~~~ipVi~~GGI~~~~da 304 (336)
T 1f76_A 231 ADSLVRHNID--GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS----LELNGRLPIIGVGGIDSVIAA 304 (336)
T ss_dssp HHHHHHTTCS--EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH----HHHTTSSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCc--EEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHH
Confidence 9999998874 5541 00000 012233343 344 7999999899999999
Q ss_pred HHHHHcCCCCEEEe
Q 015161 305 KKIVKGNLADVINI 318 (412)
Q Consensus 305 ~~~i~~~a~d~v~i 318 (412)
.++++.| +|.+++
T Consensus 305 ~~~l~~G-Ad~V~i 317 (336)
T 1f76_A 305 REKIAAG-ASLVQI 317 (336)
T ss_dssp HHHHHHT-CSEEEE
T ss_pred HHHHHCC-CCEEEe
Confidence 9999998 899876
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.37 Score=47.97 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch-hH----HHHHHHHHHHh-----CCCcEEEEeCC-
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL-KE----DIEVLRAIRAV-----HPDSSFILDAN- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~-~~----D~~~v~avr~~-----~~~~~l~vDaN- 240 (412)
.++.|+++++.||..+-|..+. ++ +. -++.+++||++ ++++.+.+=.+
T Consensus 172 F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~ 251 (419)
T 3l5a_A 172 YRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATP 251 (419)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEeccc
Confidence 3556677888999999999761 22 22 24567888885 34554443322
Q ss_pred -----C--CCCHHHHHHHHHHHHc-CCCCCceee------------cCCC-C-CCHHHHHHhHHHhhccc--CCeEEeCC
Q 015161 241 -----E--GYKPQEAVEVLEKLYE-MGVTPVLFE------------QPVH-R-DDWEGLGHVSHIAKDKF--GVSVAADE 296 (412)
Q Consensus 241 -----~--~~~~~~A~~~~~~l~~-~~l~~~~iE------------eP~~-~-~d~~~~~~l~~~~~~~~--~ipIa~dE 296 (412)
+ +|+.++++++++.|++ .++. ||+ ++.. . .+++-.+++++ .. .+||.+.=
T Consensus 252 ~~~~~~~~G~~~ed~~~la~~L~~~~Gvd--~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~----~v~~~iPVI~~G 325 (419)
T 3l5a_A 252 EETRGSDLGYTIDEFNQLIDWVMDVSNIQ--YLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYE----HLAGRIPLIASG 325 (419)
T ss_dssp CEEETTEEEECHHHHHHHHHHHHHHSCCC--CEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHH----HHTTSSCEEECS
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeeCCccccccccCCCCccccHHHHHHHHH----HcCCCCeEEEEC
Confidence 2 8999999999999999 8874 554 1111 1 12333444543 33 58999988
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe
Q 015161 297 SCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 297 s~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+.+++++.++++. +|.|.+
T Consensus 326 gI~t~e~Ae~~L~~--aDlVai 345 (419)
T 3l5a_A 326 GINSPESALDALQH--ADMVGM 345 (419)
T ss_dssp SCCSHHHHHHHGGG--CSEEEE
T ss_pred CCCCHHHHHHHHHh--CCcHHH
Confidence 89999999999987 898754
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.091 Score=50.65 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+.+..++-+++|++.|-. .+--.++. ++.+.+++++ +++.+|+.+|-+ ++..-+...++.| +|.+.+.|.
T Consensus 43 ~D~~atv~Qi~~l~~aG~d--iVRvavp~~~~a~al~~I~----~~~~vPlvaDiH-f~~~lal~a~e~G-~dklRINPG 114 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCE--IVRVAVPHKEDVEALEEIV----KKSPMPVIADIH-FAPSYAFLSMEKG-VHGIRINPG 114 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCC--EEEEECCSHHHHHHHHHHH----HHCSSCEEEECC-SCHHHHHHHHHTT-CSEEEECHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHH----hcCCCCEEEeCC-CCHHHHHHHHHhC-CCeEEECCc
Confidence 4577788888889988864 78877775 2344555554 468999999976 5566666777765 899999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEc
Q 015161 322 KVG-VLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 322 ~~G-it~~l~i~~~A~~~gi~~~~~ 345 (412)
.+| -....+++..|+++|+++.+|
T Consensus 115 Nig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 115 NIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp HHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCchhHHHHHHHHHHHcCCCEEEe
Confidence 998 777889999999999999885
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=93.94 E-value=1.7 Score=41.00 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=83.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCC
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYK 244 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~--~~~~~l--~vDaN-~~~~ 244 (412)
+..++.++.+.++++.+.|...+||-=+. +.++-+++|++++++ .+++.+ +-|+. ....
T Consensus 89 Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g 168 (295)
T 1s2w_A 89 GYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWG 168 (295)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcccc
Confidence 34467788888999999999999985321 223447899999987 356554 67877 6677
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
.+++++.++.+++.|....|+|-+++. .+..+++++.++ ..+|+...-..++..+..++-+.| +..+
T Consensus 169 ~~~ai~Ra~ay~eAGAd~i~~e~~~~~--~~~~~~i~~~~~--~~~P~i~~~~~~~~~~~~eL~~lG-v~~v 235 (295)
T 1s2w_A 169 LDEALKRAEAYRNAGADAILMHSKKAD--PSDIEAFMKAWN--NQGPVVIVPTKYYKTPTDHFRDMG-VSMV 235 (295)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCSSS--SHHHHHHHHHHT--TCSCEEECCSTTTTSCHHHHHHHT-CCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCC--HHHHHHHHHHcC--CCCCEEEeCCCCCCCCHHHHHHcC-CcEE
Confidence 999999999999998776799965552 344677775332 127886542211111244444555 3443
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.3 Score=44.56 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+++++.++++.|-+-|+. +||=++...+ .+..+++++.+ .++-|.+| ++.+.++++.+++.| +|++..-
T Consensus 43 ~~~~~a~~~a~al~~gGi~--~iEvt~~t~~a~e~I~~l~~~~---~~~~iGaG-TVlt~~~a~~Ai~AG-A~fIvsP-- 113 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLP--AAEITFRSDAAVEAIRLLRQAQ---PEMLIGAG-TILNGEQALAAKEAG-ATFVVSP-- 113 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHHHC---TTCEEEEE-CCCSHHHHHHHHHHT-CSEEECS--
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHhC---CCCEEeEC-CcCCHHHHHHHHHcC-CCEEEeC--
Confidence 3578999999999999986 9998887543 45556665421 24556666 578899999999998 4776431
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
|. ..++++.|+++|+++++|++.-+.+
T Consensus 114 --~~--~~~vi~~~~~~gi~~ipGv~TptEi 140 (232)
T 4e38_A 114 --GF--NPNTVRACQEIGIDIVPGVNNPSTV 140 (232)
T ss_dssp --SC--CHHHHHHHHHHTCEEECEECSHHHH
T ss_pred --CC--CHHHHHHHHHcCCCEEcCCCCHHHH
Confidence 22 2466788999999999998865444
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.30 E-value=3.2 Score=38.93 Aligned_cols=117 Identities=12% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCC-------------ChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHHH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEAV 249 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-------------~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~A~ 249 (412)
..+++++.+.++++.+.|...+||-=+. +.++-+++|++++++ .+++.+ +-|+ .....++++
T Consensus 93 yg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai 171 (287)
T 3b8i_A 93 YGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVI 171 (287)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHH
Confidence 4488888899999999999999986432 334667899999997 356554 6899 777889999
Q ss_pred HHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CCCHHHHHHHHHcC
Q 015161 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGN 311 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~ 311 (412)
+.++.+++.|....|+|-+ + +.+..+++++ ..++|+..=|. .+....+.++-+.|
T Consensus 172 ~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ii~~~g~~~~~~~~eL~~lG 227 (287)
T 3b8i_A 172 QRTLAYQEAGADGICLVGV-R--DFAHLEAIAE----HLHIPLMLVTYGNPQLRDDARLARLG 227 (287)
T ss_dssp HHHHHHHHTTCSEEEEECC-C--SHHHHHHHHT----TCCSCEEEECTTCGGGCCHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEecCC-C--CHHHHHHHHH----hCCCCEEEeCCCCCCCCCHHHHHHcC
Confidence 9999999998776799964 2 3455777774 56788874332 11122344555555
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=1.6 Score=40.88 Aligned_cols=128 Identities=10% Similarity=0.155 Sum_probs=80.3
Q ss_pred ceeecCCCHHHHHHHHHHHHH-cCCCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 015161 182 DITIPIVSPAEAAELASKYRK-QGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 248 (412)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A 248 (412)
...+...++++..+.++.+.+ .|+..+.+.++ .+++.-.+.++++++.. ++.+.+=....|+ +.
T Consensus 102 ~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~-~~pv~vk~~~~~~--~~ 178 (311)
T 1ep3_A 102 IANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVT--DI 178 (311)
T ss_dssp EEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSS--CS
T ss_pred EEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCChH--HH
Confidence 334444567787777777766 89999988775 13333467788888863 2334432222232 33
Q ss_pred HHHHHHHHcCCCCCceeec----------CCCC--------------CC----HHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 249 VEVLEKLYEMGVTPVLFEQ----------PVHR--------------DD----WEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEe----------P~~~--------------~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
.++++.+++.++. +|-= +-.. .+ ++..+++ ++.+++||.+.=-+.+
T Consensus 179 ~~~a~~l~~~G~d--~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i----~~~~~ipvia~GGI~~ 252 (311)
T 1ep3_A 179 VPIAKAVEAAGAD--GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQV----AQDVDIPIIGMGGVAN 252 (311)
T ss_dssp HHHHHHHHHTTCS--EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHH----HTTCSSCEEECSSCCS
T ss_pred HHHHHHHHHcCCC--EEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHH----HHhcCCCEEEECCcCC
Confidence 4567777777764 4331 1000 00 1223333 3467899999989999
Q ss_pred HHHHHHHHHcCCCCEEEec
Q 015161 301 LDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~ik 319 (412)
.+++.++++.| +|.+++=
T Consensus 253 ~~d~~~~l~~G-Ad~V~vg 270 (311)
T 1ep3_A 253 AQDVLEMYMAG-ASAVAVG 270 (311)
T ss_dssp HHHHHHHHHHT-CSEEEEC
T ss_pred HHHHHHHHHcC-CCEEEEC
Confidence 99999999988 8998764
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.1 Score=43.28 Aligned_cols=130 Identities=9% Similarity=0.132 Sum_probs=84.1
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCC-EEeEecC-------C----ChhHHHHHHHHHHHhC--C-CcEEEEeCCCCC
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFT-TLKLKVG-------K----NLKEDIEVLRAIRAVH--P-DSSFILDANEGY 243 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~-~~KiKvG-------~----~~~~D~~~v~avr~~~--~-~~~l~vDaN~~~ 243 (412)
.|+..++...+++++.+.++.+.+.||. .|-+.++ . +++.-.+.+++++++. | -++|+.| +
T Consensus 129 ~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~----~ 204 (345)
T 3oix_A 129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY----F 204 (345)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC----C
T ss_pred CCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC----C
Confidence 3455566667899999988888778998 8999887 1 2333345566676653 2 2344443 6
Q ss_pred CHHHHHHHHHHHHcCCCCCce------------ee--cCCC---------------CCCHHHHHHhHHHhhccc--CCeE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVL------------FE--QPVH---------------RDDWEGLGHVSHIAKDKF--GVSV 292 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~------------iE--eP~~---------------~~d~~~~~~l~~~~~~~~--~ipI 292 (412)
+..+..+.++.+...++. . +. .|.- +-.++..++++ +.. .+||
T Consensus 205 ~~~~~a~~~~~aga~~i~--~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~----~~~~~~ipI 278 (345)
T 3oix_A 205 DIVHFDQAAAIFNXYPLT--FVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY----KRLNPSIQI 278 (345)
T ss_dssp CHHHHHHHHHHHTTSCCS--EEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH----TTSCTTSEE
T ss_pred CHHHHHHHHHHhCCCceE--EEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH----HHcCCCCcE
Confidence 777766777766555552 2 22 1211 11123334443 455 6999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 293 AADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 293 a~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+.=-+.+.+|+.+++..| +|.+++=
T Consensus 279 Ig~GGI~s~~da~~~l~aG-Ad~V~ig 304 (345)
T 3oix_A 279 IGTGGVXTGRDAFEHILCG-ASMVQIG 304 (345)
T ss_dssp EEESSCCSHHHHHHHHHHT-CSEEEES
T ss_pred EEECCCCChHHHHHHHHhC-CCEEEEC
Confidence 9988999999999999988 7998874
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.8 Score=44.44 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=86.7
Q ss_pred eeeceeecCCCHHHHHHHHHHHH---HcCCCEEeEecC-------C----ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 015161 179 ITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKVG-------K----NLKEDIEVLRAIRAVHPDSSFILDANEGYK 244 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~---~~Gf~~~KiKvG-------~----~~~~D~~~v~avr~~~~~~~l~vDaN~~~~ 244 (412)
.|+..++...+++++.+.++.+. +.|+..|-+.++ . +++.-.+.+++++++. ++.+.|--.-.|+
T Consensus 127 ~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-~~PV~vKi~p~~d 205 (354)
T 4ef8_A 127 KPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFD 205 (354)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-CSCEEEEECCCCS
T ss_pred CcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-CCCeEEEecCCCC
Confidence 34555665567888877777665 568999999887 1 2334445677788763 2344444444477
Q ss_pred HHHHHHHHHHHHcCC-CCCcee----------------ecCC---------------CCCCHHHHHHhHHHhhccc-CCe
Q 015161 245 PQEAVEVLEKLYEMG-VTPVLF----------------EQPV---------------HRDDWEGLGHVSHIAKDKF-GVS 291 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~-l~~~~i----------------EeP~---------------~~~d~~~~~~l~~~~~~~~-~ip 291 (412)
.++..++++.+.+.+ +. +| +.|. .+-+++..+++++ .. .+|
T Consensus 206 ~~~~~~~a~~~~~~Gg~d--~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~----~~~~ip 279 (354)
T 4ef8_A 206 FAHFDAAAEILNEFPKVQ--FITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR----RCPGKL 279 (354)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH----HCTTSE
T ss_pred HHHHHHHHHHHHhCCCcc--EEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH----hCCCCC
Confidence 777778888888876 32 22 1111 1122444555543 33 699
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 292 VAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 292 Ia~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
|.+.=-+.+.+|+.+++..| +|.+++
T Consensus 280 II~~GGI~s~~da~~~l~aG-Ad~V~v 305 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHVLAG-ASMVQV 305 (354)
T ss_dssp EEEESCCCSHHHHHHHHHHT-EEEEEE
T ss_pred EEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 99988999999999999987 688876
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.89 Score=42.98 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEec-------C-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKV-------G-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEA 248 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKv-------G-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~A 248 (412)
..+++++.+.++.+.+.|-..+||-= | .+.++-+++|++.+++ ++++.| |.|+......++|
T Consensus 94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldea 173 (298)
T 3eoo_A 94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAA 173 (298)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHH
Confidence 34788888889999999999999842 2 1345568899998886 466554 7888766668999
Q ss_pred HHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 249 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
++.++...+.|....|+|-+- +.+.++++++ ..++|+..
T Consensus 174 i~Ra~ay~~AGAD~if~~~~~---~~ee~~~~~~----~~~~Pl~~ 212 (298)
T 3eoo_A 174 IERAIAYVEAGADMIFPEAMK---TLDDYRRFKE----AVKVPILA 212 (298)
T ss_dssp HHHHHHHHHTTCSEEEECCCC---SHHHHHHHHH----HHCSCBEE
T ss_pred HHHHHhhHhcCCCEEEeCCCC---CHHHHHHHHH----HcCCCeEE
Confidence 999999999887667999763 5677788875 34578754
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=91.82 E-value=6.6 Score=35.53 Aligned_cols=142 Identities=15% Similarity=0.237 Sum_probs=95.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+-..+++++.+.++.+.+-|++.+.+..-. ....+.++++++.+|+..+-. ..-.+.+++...+ +.|.. |
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~e~I~~l~~~~~~~~iGa--GTVlt~~~a~~Ai----~AGA~--f 109 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS--DAAVEAIRLLRQAQPEMLIGA--GTILNGEQALAAK----EAGAT--F 109 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEE--ECCCSHHHHHHHH----HHTCS--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCCEEeE--CCcCCHHHHHHHH----HcCCC--E
Confidence 345678889999999999999999987742 234677888888888765554 4467777764443 34543 6
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHc-CCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~-gi~~ 342 (412)
+=-|- .|.+-.+ .++ +.++|+..| +.|+.++.++++.| +|++.+=|.. .|-.+.+ .++.... ++++
T Consensus 110 IvsP~--~~~~vi~-~~~----~~gi~~ipG--v~TptEi~~A~~~G-ad~vK~FPa~~~gG~~~l--kal~~p~p~ip~ 177 (232)
T 4e38_A 110 VVSPG--FNPNTVR-ACQ----EIGIDIVPG--VNNPSTVEAALEMG-LTTLKFFPAEASGGISMV--KSLVGPYGDIRL 177 (232)
T ss_dssp EECSS--CCHHHHH-HHH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEECSTTTTTHHHHH--HHHHTTCTTCEE
T ss_pred EEeCC--CCHHHHH-HHH----HcCCCEEcC--CCCHHHHHHHHHcC-CCEEEECcCccccCHHHH--HHHHHHhcCCCe
Confidence 65554 3333333 332 358999887 67999999999988 7998876654 3422222 2333444 6899
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++-+-+
T Consensus 178 ~ptGGI 183 (232)
T 4e38_A 178 MPTGGI 183 (232)
T ss_dssp EEBSSC
T ss_pred eeEcCC
Confidence 886644
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.56 Score=44.15 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCC--C-------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPV--H-------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~--~-------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
.++.++.++++++|++.|+. +||.-. . .++++-++++. +..+++++.- +.+..+++++++.|
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~p~~~~~~e~~~~i~----~~~~~~v~~l--~~n~~~i~~a~~~G- 92 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYA--RIEATSFVSPKWVPQLADSREVMAGIR----RADGVRYSVL--VPNMKGYEAAAAAH- 92 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSC----CCSSSEEEEE--CSSHHHHHHHHHTT-
T ss_pred CcCHHHHHHHHHHHHHcCcC--EEEEccCcCccccccccCHHHHHHHHH----hCCCCEEEEE--eCCHHHHHHHHHCC-
Confidence 47899999999999999985 899833 1 24455555553 3347888543 26789999999987
Q ss_pred CCEEEecC--C--------CCc----HHHHHHHHHHHHHcCCcEE
Q 015161 313 ADVINIKL--A--------KVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 313 ~d~v~ik~--~--------~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.+.+.. + +.+ +..+.+++++|+++|+.+.
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~ 137 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR 137 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 67787773 2 223 4556788999999999987
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=91.15 E-value=5.7 Score=35.47 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCEEeEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-----
Q 015161 195 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--~~--~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i----- 265 (412)
++++.+.+.|...+-+.... ++ ....+.++.+|+.+++..+.++.+ +++++.+. .+.+.. |+
T Consensus 92 ~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~a----~~~Gad--~i~~~v~ 162 (234)
T 1yxy_A 92 TEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLVA----HQAGID--FVGTTLS 162 (234)
T ss_dssp HHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHHH----HHTTCS--EEECTTT
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHHH----HHcCCC--EEeeecc
Confidence 44566778899988765542 12 133567888998878888998875 56665433 334432 44
Q ss_pred --e---cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 --E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 --E---eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ +.....+++.++++.+ . ++||.++=-+.+.+++.++++.| +|.+.+
T Consensus 163 g~~~~~~~~~~~~~~~i~~~~~----~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~v 214 (234)
T 1yxy_A 163 GYTPYSRQEAGPDVALIEALCK----A-GIAVIAEGKIHSPEEAKKINDLG-VAGIVV 214 (234)
T ss_dssp TSSTTSCCSSSCCHHHHHHHHH----T-TCCEEEESCCCSHHHHHHHHTTC-CSEEEE
T ss_pred ccCCCCcCCCCCCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 1 2223345666777653 4 79999988899999999999987 677754
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=90.98 E-value=2.7 Score=42.47 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee----
Q 015161 192 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---- 266 (412)
+..+.+.++.+.|+..+-+... .......+.++++|+..|++.+.+- +..+.++| +.+.+.|+. +|-
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a----~~l~~~G~d--~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGT----EALIKAGAD--AVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHH----HHHHHcCCC--EEEEcCC
Confidence 3456778888999999988655 3445678889999998777777763 35677777 344556653 443
Q ss_pred ----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 ----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+....-.+..+.++.+.. ...++||.++=-+.+..|+.+++..| +|.+++
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipvia~GGI~~~~di~kala~G-Ad~V~i 368 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVA-RKYDVPIIADGGIRYSGDIVKALAAG-AESVMV 368 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCccccccccCCCCccHHHHHHHHHHHH-hhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 111112345556655432 23589999999999999999999998 788874
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=90.85 E-value=3.9 Score=37.69 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=79.6
Q ss_pred eeecCCCHHHHHHHHHHHHH--cCCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRK--QGFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~--~Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
.+.+..+.+|....++-.++ -|-.-+|+.|-.+. .+..+.+++.++. -.++..+.-.+.. ...++++
T Consensus 79 NTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd------~~~akrl 152 (265)
T 1wv2_A 79 NTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD------PIIARQL 152 (265)
T ss_dssp ECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC------HHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC------HHHHHHH
Confidence 46677888887766665555 36788999986221 1233445555553 3345544222221 4566778
Q ss_pred HcCCCCCceeecCCCC--------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVTPVLFEQPVHR--------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~~~~iEeP~~~--------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.+.. .+ .|+.. -|++-++.+.+ ..++||..+=-+.++.|+..+++.| +|.+.+
T Consensus 153 ~~~G~~--aV-mPlg~pIGsG~Gi~~~~lI~~I~e----~~~vPVI~eGGI~TPsDAa~AmeLG-AdgVlV 215 (265)
T 1wv2_A 153 AEIGCI--AV-MPLAGLIGSGLGICNPYNLRIILE----EAKVPVLVDAGVGTASDAAIAMELG-CEAVLM 215 (265)
T ss_dssp HHSCCS--EE-EECSSSTTCCCCCSCHHHHHHHHH----HCSSCBEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred HHhCCC--EE-EeCCccCCCCCCcCCHHHHHHHHh----cCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 888864 66 34332 36777777764 5689999988999999999999998 577655
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=90.72 E-value=4.8 Score=37.46 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC--------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCC---C----CHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEG---Y----KPQE 247 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG--------~~~~~D~~~v~avr~~----~~~~~l--~vDaN~~---~----~~~~ 247 (412)
++++..+.++++.+.|...+||-=+ .+.++-+++|++++++ +.++.+ +-|+... . ..++
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ 169 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE 169 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence 6888899999999999999998643 2455667889998886 666655 4566432 1 3689
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC--CCCCCHHHHHHHHHcCCCCEEE
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es~~~~~~~~~~i~~~a~d~v~ 317 (412)
+++.++.+++.|....|+|-+ + +.+..+++++ ..++|+..- ....+. .++-+.| +..+.
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n~~~~~~~~~~---~eL~~lG-v~~v~ 230 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLA-L--QSQDIRALAD----ALRVPLNVMAFPGSPVP---RALLDAG-AARVS 230 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTC-C--CHHHHHHHHH----HCSSCEEEECCTTSCCH---HHHHHTT-CSEEE
T ss_pred HHHHHHHHHHCCCCEEEECCC-C--CHHHHHHHHH----hcCCCEEEecCCCCCCH---HHHHHcC-CcEEE
Confidence 999999999988766789885 2 3455777875 456787443 233343 4555556 55543
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.67 E-value=2.5 Score=39.82 Aligned_cols=122 Identities=17% Similarity=0.129 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--------------ChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--------------NLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQEAVE 250 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------------~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~A~~ 250 (412)
+++++.+.++++.+.|...+||-=+. +.++-+++|++++++ ++++.+ +-|+......+++++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 78888899999999999999985331 233556789888887 456544 567654455799999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe--CCC-CCCHHHHHHHHHcCCCCEEEe
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DES-CRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~--dEs-~~~~~~~~~~i~~~a~d~v~i 318 (412)
.++.+++.|....|+|-+ + +.+..+++++ ..++|+.. .|. ........++-+.| ++.+..
T Consensus 172 ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~iP~~~N~~~~g~~p~~~~~eL~~~G-~~~v~~ 234 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFAD----AVQVPILANITEFGATPLFTTDELRSAH-VAMALY 234 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-C--SHHHHHHHHH----HHCSCBEEECCSSSSSCCCCHHHHHHTT-CSEEEE
T ss_pred HHHHHHHcCCCEEEEeCC-C--CHHHHHHHHH----HcCCCEEEEecccCCCCCCCHHHHHHcC-CCEEEE
Confidence 999999998776799975 2 4666788875 45688743 331 11122345555666 566544
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=90.09 E-value=8.9 Score=33.34 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=88.3
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCC
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 262 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~ 262 (412)
.+...+++++.+.++.+.+.|+..+.+..+.. .-.+.++.+|+.. ++..+.++. ..+++++....+ .+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~--v~~~~~~~~a~~----~Gad- 85 (205)
T 1wa3_A 15 VLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGT--VTSVEQCRKAVE----SGAE- 85 (205)
T ss_dssp EECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEES--CCSHHHHHHHHH----HTCS-
T ss_pred EEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecc--cCCHHHHHHHHH----cCCC-
Confidence 44456788888889999999999998877631 2234577888874 466666653 347777544332 4543
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHc-CCc
Q 015161 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS-GLN 341 (412)
Q Consensus 263 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~-gi~ 341 (412)
++=.|... ..+-+..+ +.++|+..+ +.+..++.++++.| +|++.+.+... ...-.+.++.+.. +++
T Consensus 86 -~iv~~~~~---~~~~~~~~----~~g~~vi~g--~~t~~e~~~a~~~G-ad~vk~~~~~~--~g~~~~~~l~~~~~~~p 152 (205)
T 1wa3_A 86 -FIVSPHLD---EEISQFCK----EKGVFYMPG--VMTPTELVKAMKLG-HTILKLFPGEV--VGPQFVKAMKGPFPNVK 152 (205)
T ss_dssp -EEECSSCC---HHHHHHHH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEETTHHH--HHHHHHHHHHTTCTTCE
T ss_pred -EEEcCCCC---HHHHHHHH----HcCCcEECC--cCCHHHHHHHHHcC-CCEEEEcCccc--cCHHHHHHHHHhCCCCc
Confidence 66233322 22333332 468999873 45788899998887 78887655322 2222333444555 788
Q ss_pred EEEccCc
Q 015161 342 LMIGGMV 348 (412)
Q Consensus 342 ~~~~~~~ 348 (412)
++..+-+
T Consensus 153 via~GGI 159 (205)
T 1wa3_A 153 FVPTGGV 159 (205)
T ss_dssp EEEBSSC
T ss_pred EEEcCCC
Confidence 8876543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=90.08 E-value=4.1 Score=36.07 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=70.9
Q ss_pred HHHHHHHcCCCEEeEecCC--Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee--ecC--
Q 015161 196 LASKYRKQGFTTLKLKVGK--NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQP-- 268 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~--~~-~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i--EeP-- 268 (412)
.++.+.+.|...+-+.... ++ ....+.++.+|+.+|+..+.+|.+ +++++.+ +.+.+.. ++ --+
T Consensus 80 ~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~~e~~~----~~~~G~d--~i~~~~~g~ 150 (223)
T 1y0e_A 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TVEEAKN----AARLGFD--YIGTTLHGY 150 (223)
T ss_dssp HHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SHHHHHH----HHHTTCS--EEECTTTTS
T ss_pred HHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CHHHHHH----HHHcCCC--EEEeCCCcC
Confidence 3445667798888776542 22 233567889999878888888875 5777644 4445543 33 111
Q ss_pred ----C----CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 269 ----V----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 269 ----~----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
. ...+++.+++++ +..++||..+=-+.+.+++.++++.| +|.+.+
T Consensus 151 t~~~~~~~~~~~~~~~~~~~~----~~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~v 203 (223)
T 1y0e_A 151 TSYTQGQLLYQNDFQFLKDVL----QSVDAKVIAEGNVITPDMYKRVMDLG-VHCSVV 203 (223)
T ss_dssp STTSTTCCTTHHHHHHHHHHH----HHCCSEEEEESSCCSHHHHHHHHHTT-CSEEEE
T ss_pred cCCCCCCCCCcccHHHHHHHH----hhCCCCEEEecCCCCHHHHHHHHHcC-CCEEEE
Confidence 0 111234445554 35689999988899999999999988 788755
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=89.60 E-value=7.2 Score=36.78 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=93.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe--cC------------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCCCCH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK--VG------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKP 245 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK--vG------------~~~~~D~~~v~avr~~----~~~~~l--~vDaN~~~~~ 245 (412)
+..+++++.+.++++.+.|-..+||- ++ .+.++-+++|++.+++ ++++-| |.|+......
T Consensus 90 Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gl 169 (302)
T 3fa4_A 90 GYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGY 169 (302)
T ss_dssp TTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCH
Confidence 34478888888899999999999974 22 1456667888888774 577654 7898766779
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC--CC----CCCHHHHHHHHHcCCCCEEEec
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES----CRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es----~~~~~~~~~~i~~~a~d~v~ik 319 (412)
++|++.++...+.|-...|+|-+. +.+.++++++.+ .++|+... |. ..+..++ -+.| +.++..-
T Consensus 170 deAi~Ra~ay~eAGAD~ifi~g~~---~~~ei~~~~~~~---~~~Pl~~n~~~~g~~p~~~~~eL---~~lG-v~~v~~~ 239 (302)
T 3fa4_A 170 EESVARLRAARDAGADVGFLEGIT---SREMARQVIQDL---AGWPLLLNMVEHGATPSISAAEA---KEMG-FRIIIFP 239 (302)
T ss_dssp HHHHHHHHHHHTTTCSEEEETTCC---CHHHHHHHHHHT---TTSCEEEECCTTSSSCCCCHHHH---HHHT-CSEEEET
T ss_pred HHHHHHHHHHHHcCCCEEeecCCC---CHHHHHHHHHHh---cCCceeEEEecCCCCCCCCHHHH---HHcC-CCEEEEc
Confidence 999999999999887667998764 356677777532 14676442 21 2344444 4556 5666554
Q ss_pred CCCCc--HHHHHHHHHHHHHcCC
Q 015161 320 LAKVG--VLGALEIIEVVRASGL 340 (412)
Q Consensus 320 ~~~~G--it~~l~i~~~A~~~gi 340 (412)
..-.. ...+.+.++--++.|.
T Consensus 240 ~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 240 FAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC
Confidence 43322 2233444444444554
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=89.59 E-value=3.3 Score=36.18 Aligned_cols=96 Identities=25% Similarity=0.287 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
.+.+++.++++.+.+.++. ++|=-+...+ .+.++++++.. ..+.+|..+ ++.+++++..+++.| +|++ +-+.
T Consensus 19 ~~~~~~~~~~~~~~~~G~~--~iev~~~~~~~~~~i~~ir~~~--~~~~~ig~~-~v~~~~~~~~a~~~G-ad~i-v~~~ 91 (205)
T 1wa3_A 19 NSVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFLK--EKGAIIGAG-TVTSVEQCRKAVESG-AEFI-VSPH 91 (205)
T ss_dssp SSHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHHH--HTTCEEEEE-SCCSHHHHHHHHHHT-CSEE-ECSS
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHHC--CCCcEEEec-ccCCHHHHHHHHHcC-CCEE-EcCC
Confidence 3688999999999999875 8874333323 23355555321 114778777 467899999888877 6988 5443
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
.. .++++.|+++|++++++.+..+
T Consensus 92 ~~-----~~~~~~~~~~g~~vi~g~~t~~ 115 (205)
T 1wa3_A 92 LD-----EEISQFCKEKGVFYMPGVMTPT 115 (205)
T ss_dssp CC-----HHHHHHHHHHTCEEECEECSHH
T ss_pred CC-----HHHHHHHHHcCCcEECCcCCHH
Confidence 22 3567888999999999765433
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=89.43 E-value=3.8 Score=38.82 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEe--cC------------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCCCCHH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLK--VG------------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEGYKPQ 246 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiK--vG------------~~~~~D~~~v~avr~~----~~~~~l--~vDaN~~~~~~ 246 (412)
..+++++.+.++.+.+.|-..+||- ++ .+.++-+++|++.+++ ++++.| |.|+......+
T Consensus 99 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gld 178 (307)
T 3lye_A 99 YGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYE 178 (307)
T ss_dssp SSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHH
Confidence 3478888888899999999999974 21 1345556888888774 567654 78887666789
Q ss_pred HHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 247 ~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
+|++.++...+.|-...|+|-+- +.+.++++++.+. ++|+..
T Consensus 179 eAi~Ra~ay~eAGAD~ifi~~~~---~~~~~~~i~~~~~---~~Pv~~ 220 (307)
T 3lye_A 179 ECIERLRAARDEGADVGLLEGFR---SKEQAAAAVAALA---PWPLLL 220 (307)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCS---CHHHHHHHHHHHT---TSCBEE
T ss_pred HHHHHHHHHHHCCCCEEEecCCC---CHHHHHHHHHHcc---CCceeE
Confidence 99999999999887667998653 4566778776331 367643
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=89.30 E-value=3.7 Score=39.06 Aligned_cols=101 Identities=19% Similarity=0.108 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecC--------------CChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHHHH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQEA 248 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG--------------~~~~~D~~~v~avr~~~--~~~~l--~vDaN~~~~~~~A 248 (412)
..+++++.+.++++.+.|...+||-=+ .+.++-+++|++++++. +++.+ +-|+......+++
T Consensus 112 yg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~a 191 (318)
T 1zlp_A 112 GGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEG 191 (318)
T ss_dssp SSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHH
Confidence 348888899999999999999998522 12345667899999873 55554 5677644456899
Q ss_pred HHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 249 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
++.++.+++.|....|+|-+ + +.+..+++++ ..++|+..
T Consensus 192 i~Ra~Ay~eAGAd~i~~e~~-~--~~e~~~~i~~----~l~~P~la 230 (318)
T 1zlp_A 192 IRRANLYKEAGADATFVEAP-A--NVDELKEVSA----KTKGLRIA 230 (318)
T ss_dssp HHHHHHHHHTTCSEEEECCC-C--SHHHHHHHHH----HSCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEcCC-C--CHHHHHHHHH----hcCCCEEE
Confidence 99999999998776799975 2 4566788875 46789854
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.28 E-value=2 Score=38.63 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeE--ecC----CChhHHHHHHHHHHHhCCCcEE--EEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKL--KVG----KNLKEDIEVLRAIRAVHPDSSF--ILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~Ki--KvG----~~~~~D~~~v~avr~~~~~~~l--~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
..+.-..++++..+.|+..+.+ .+| .+.+.-.+.+++++++.+.+.+ ++.. ..|+.++..+.++.+.+.|.
T Consensus 68 ~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~-~~l~~~~~~~~a~~a~eaGa 146 (225)
T 1mzh_A 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNEEEIKKAVEICIEAGA 146 (225)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG-GGCCHHHHHHHHHHHHHHTC
T ss_pred chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeC-CCCCHHHHHHHHHHHHHhCC
Confidence 3444455567778899999995 343 2344444568888887433433 3332 45898888899999999887
Q ss_pred CCceeecCCC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 261 TPVLFEQPVH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 261 ~~~~iEeP~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
. +|-=-.. .-+++..+.+++.. ...+||.+.=-+.+.+++.++++.| +|.
T Consensus 147 d--~I~tstg~~~gga~~~~i~~v~~~v--~~~ipVia~GGI~t~~da~~~l~aG-A~~ 200 (225)
T 1mzh_A 147 D--FIKTSTGFAPRGTTLEEVRLIKSSA--KGRIKVKASGGIRDLETAISMIEAG-ADR 200 (225)
T ss_dssp S--EEECCCSCSSSCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTT-CSE
T ss_pred C--EEEECCCCCCCCCCHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHHHHhC-chH
Confidence 4 7742221 12566677766422 1268998777788999999999987 564
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=88.85 E-value=14 Score=34.65 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=75.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--CCcEE--EEeCC-CCCC
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--PDSSF--ILDAN-EGYK 244 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~~~~l--~vDaN-~~~~ 244 (412)
+..++++..+.++++.+.|...+||-=+. +.++-+++|++++++. +++.+ +-|+. ....
T Consensus 85 Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g 164 (290)
T 2hjp_A 85 GFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhcccc
Confidence 33488888899999999999999985321 1224477899998873 55554 67877 6677
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC--CeEEeC
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAAD 295 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--ipIa~d 295 (412)
.+++++.++.+++.|....|+|--++ +.+..+++++. .+ +|+...
T Consensus 165 ~~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~----~~~~vP~i~n 211 (290)
T 2hjp_A 165 QQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKS----WPGKVPLVLV 211 (290)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCS--SSHHHHHHHHH----CCCSSCEEEC
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCCCC--CHHHHHHHHHH----cCCCCCEEEe
Confidence 99999999999998876679998233 23446777753 44 898764
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=88.39 E-value=5.9 Score=38.23 Aligned_cols=118 Identities=13% Similarity=0.199 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeCCC----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDANE---- 241 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDaN~---- 241 (412)
.++.|+++++.||..+.|+.+. ++ +--++.+++||++ +++ +.+++-++.
T Consensus 154 F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g 233 (358)
T 4a3u_A 154 YEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQG 233 (358)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCC
Confidence 4666788889999999999751 12 1235678999997 655 445554432
Q ss_pred CC---CHHHHHHHHHHHHcCCCCCceee-------cCCCCCCHHH-HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 242 GY---KPQEAVEVLEKLYEMGVTPVLFE-------QPVHRDDWEG-LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 242 ~~---~~~~A~~~~~~l~~~~l~~~~iE-------eP~~~~d~~~-~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
++ +.++.+..++.+++.++. +++ .+........ .++++ +....||+.+- ..+++...++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~a~~ik----~~~~~~v~~~g-~~~~~~ae~~l~~ 306 (358)
T 4a3u_A 234 TVDSHPEQVFIPAAKMLSDLDIA--FLGMREGAVDGTFGKTDQPKLSPEIR----KVFKPPLVLNQ-DYTFETAQAALDS 306 (358)
T ss_dssp BCCSSTHHHHHHHHHHHHHHTCS--EEEEECCBTTCSSSBCSSCCCHHHHH----HHCCSCEEEES-SCCHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHhhhccCcc--ccccccccccCcccccccHHHHHHHH----HhcCCcEEEeC-CCCHHHHHHHHHc
Confidence 22 345556777888877653 443 1222211111 22333 34567887764 5789999999999
Q ss_pred CCCCEEE
Q 015161 311 NLADVIN 317 (412)
Q Consensus 311 ~a~d~v~ 317 (412)
|.+|.|-
T Consensus 307 G~aD~V~ 313 (358)
T 4a3u_A 307 GVADAIS 313 (358)
T ss_dssp TSCSEEE
T ss_pred CCceEeH
Confidence 9999874
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=88.14 E-value=14 Score=36.65 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=55.7
Q ss_pred CcE-EEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-------ecC----CCCC------------CHHHHHHhHHHhhcc
Q 015161 232 DSS-FILDANEGYKPQEAVEVLEKLYEMGVTPVLF-------EQP----VHRD------------DWEGLGHVSHIAKDK 287 (412)
Q Consensus 232 ~~~-l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i-------EeP----~~~~------------d~~~~~~l~~~~~~~ 287 (412)
++. +.+=-...|+.++..++++.+++.++. +| .++ +... .++-.++++ +.
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaD--gI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~----~~ 369 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNID--GMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMY----NY 369 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCS--EEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHH----HH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCC--EEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHH----HH
Confidence 445 566666668888889999999988764 33 111 0000 122334443 34
Q ss_pred c--CCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 288 F--GVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 288 ~--~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+ ++||.+.=-+.+.+|+.+.+..| +|.+|+=
T Consensus 370 v~~~iPVIg~GGI~s~~DA~e~l~aG-Ad~Vqig 402 (443)
T 1tv5_A 370 TNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLY 402 (443)
T ss_dssp TTTCSCEEEESSCCSHHHHHHHHHTT-EEEEEES
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 5 79999988999999999999988 7999874
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.05 E-value=9 Score=35.15 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=75.0
Q ss_pred ceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-C---------------------hhHHHHHHHHHHHhCCCcEEEE--
Q 015161 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N---------------------LKEDIEVLRAIRAVHPDSSFIL-- 237 (412)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~---------------------~~~D~~~v~avr~~~~~~~l~v-- 237 (412)
|.+.+..+.++..+.++.+.+.|...+.+-+-. | ++.-.+.++++|+..|++.+.+
T Consensus 22 ~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~ 101 (262)
T 2ekc_A 22 YLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMT 101 (262)
T ss_dssp EEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred EecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 344445566777777888888889888886531 1 1122345677777654555444
Q ss_pred eCCC------------------------CCCHHHHHHHHHHHHcCCCCCceeecCCCCCC-H------------------
Q 015161 238 DANE------------------------GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-W------------------ 274 (412)
Q Consensus 238 DaN~------------------------~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~------------------ 274 (412)
+.|. ....++..++.+.+.++++.+.++=.|...++ +
T Consensus 102 y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g 181 (262)
T 2ekc_A 102 YYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTG 181 (262)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC
T ss_pred cCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 4331 12457777888888888754222223432211 0
Q ss_pred ----------HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 275 ----------EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 275 ----------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
....++-+.+|+.+++||+.|=-+.+.+++.. +..+ +|++.+
T Consensus 182 ~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~g-ADgvIV 233 (262)
T 2ekc_A 182 TTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSF-ADGVVV 233 (262)
T ss_dssp ---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTT-SSEEEE
T ss_pred ccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcC-CCEEEE
Confidence 11111222233445677777777777777777 4444 666643
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=86.87 E-value=6.1 Score=38.35 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC-CC---------hhHHHHHHHHHHHh---C---CCcEEEEeCCCCCCHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG-KN---------LKEDIEVLRAIRAV---H---PDSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG-~~---------~~~D~~~v~avr~~---~---~~~~l~vDaN~~~~~~~A~~~~ 252 (412)
+++++.+.++.+. .+...|-+-++ ++ .+.-.+.+++++++ . .++.+.|=-.-.++.++..+++
T Consensus 162 ~~~dy~~~~~~~~-~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia 240 (367)
T 3zwt_A 162 AAEDYAEGVRVLG-PLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp HHHHHHHHHHHHG-GGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHh-hhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHH
Confidence 4677777666653 45788888887 21 22223455666553 1 3567777777778888889999
Q ss_pred HHHHcCCCCCceee-------cC-----CCC-------------CCHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHH
Q 015161 253 EKLYEMGVTPVLFE-------QP-----VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVK 305 (412)
Q Consensus 253 ~~l~~~~l~~~~iE-------eP-----~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~ 305 (412)
+.+++.++. .|- .+ ... -.++..++++ +.. .+||.+.=-+.+.+|+.
T Consensus 241 ~~~~~aGad--gi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~----~~v~~~ipvI~~GGI~s~~da~ 314 (367)
T 3zwt_A 241 SVVKELGID--GLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMY----ALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHTCC--EEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHH----HHTTTCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHH----HHcCCCceEEEECCCCCHHHHH
Confidence 999887753 221 21 000 0123344444 345 79999988999999999
Q ss_pred HHHHcCCCCEEEec
Q 015161 306 KIVKGNLADVINIK 319 (412)
Q Consensus 306 ~~i~~~a~d~v~ik 319 (412)
+++..| +|.+++=
T Consensus 315 ~~l~~G-Ad~V~vg 327 (367)
T 3zwt_A 315 EKIRAG-ASLVQLY 327 (367)
T ss_dssp HHHHHT-CSEEEES
T ss_pred HHHHcC-CCEEEEC
Confidence 999988 6998864
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=86.62 E-value=2.3 Score=38.50 Aligned_cols=149 Identities=14% Similarity=0.088 Sum_probs=85.0
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCC-cEEEEeCC---C-------CCCH---HHH
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDAN---E-------GYKP---QEA 248 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~-~~l~vDaN---~-------~~~~---~~A 248 (412)
..++.++++ ++++.+.|...+ -+|...-.+.+.+..+++. +.+ +.+.+|+. + +|.. ...
T Consensus 80 ~ggI~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~ 153 (253)
T 1thf_D 80 GGGIHDFET----ASELILRGADKV--SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILL 153 (253)
T ss_dssp ESSCCSHHH----HHHHHHTTCSEE--EESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEH
T ss_pred eCCCCCHHH----HHHHHHcCCCEE--EEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCH
Confidence 334556654 444556786644 5663222333456566554 543 56888884 2 3421 123
Q ss_pred HHHHHHHHcCCCCCceee-----cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC
Q 015161 249 VEVLEKLYEMGVTPVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~ 323 (412)
.++++.+.+.++....+= .....-|++.++++++ ..++||.++=-+.+.+++.++.+.| +|.+.+=-.-.
T Consensus 154 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vGsal~ 228 (253)
T 1thf_D 154 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFH 228 (253)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHH
T ss_pred HHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHHcC-ChHHHHHHHHH
Confidence 456666666665422331 1111235777777763 5689999988899999999999866 67765421111
Q ss_pred c-HHHHHHHHHHHHHcCCcEE
Q 015161 324 G-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 324 G-it~~l~i~~~A~~~gi~~~ 343 (412)
+ -....++.+..++.|+++-
T Consensus 229 ~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 229 FREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp TTCSCHHHHHHHHHHTTCCCC
T ss_pred cCCCCHHHHHHHHHHcCCccc
Confidence 1 1023455566678888654
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=86.17 E-value=1.7 Score=44.83 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCCEEeEecCCChhH-------------HHHHHHHHHHhCC--CcEEEEeCC-----------------
Q 015161 193 AAELASKYRKQGFTTLKLKVGKNLKE-------------DIEVLRAIRAVHP--DSSFILDAN----------------- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~~~~~-------------D~~~v~avr~~~~--~~~l~vDaN----------------- 240 (412)
+.+.++++.+.|...+ -+|...-. +.+.++.+.+.++ .+.+.+|+.
T Consensus 349 ~~~~a~~~l~aGad~V--~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~ 426 (555)
T 1jvn_A 349 ALEVASLYFRSGADKV--SIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFET 426 (555)
T ss_dssp HHHHHHHHHHHTCSEE--EECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEEC
T ss_pred HHHHHHHHHHcCCCEE--EECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccc
Confidence 4566777888886644 44421112 2467888888754 377889973
Q ss_pred ------C-----------CCCH---HHHHHHHHHHHcCCCCCceee-----cCCCCCCHHHHHHhHHHhhcccCCeEEeC
Q 015161 241 ------E-----------GYKP---QEAVEVLEKLYEMGVTPVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 241 ------~-----------~~~~---~~A~~~~~~l~~~~l~~~~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~d 295 (412)
+ +|+. .++.+++++++++++.-..+- +=..--|++.++++.+ ..++||.+.
T Consensus 427 ~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~----~~~iPVIas 502 (555)
T 1jvn_A 427 EYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKD----AVKIPVIAS 502 (555)
T ss_dssp SSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHH----HCSSCEEEC
T ss_pred cccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHH----hCCccEEEE
Confidence 2 3432 246788999999886522221 1112246888888864 578999998
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEecCCCC-cHHHHHHHHHHHHHcCCcE
Q 015161 296 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 296 Es~~~~~~~~~~i~~~a~d~v~ik~~~~-Git~~l~i~~~A~~~gi~~ 342 (412)
=-+.+++|+.++++...++.+.+--... |-....++.++++..|+++
T Consensus 503 GGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 503 SGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp SCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 8899999999999833356654432211 2223456667788888875
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.81 E-value=19 Score=32.20 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=89.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
-..++++..+.++.+.+.|.+.+.+..-. ....+.++.+++.+++..+..+. -.+.+++... -.. +-. ++
T Consensus 33 r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~igagt--vl~~d~~~~A-~~a---GAd--~v 102 (225)
T 1mxs_A 33 TIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPELCVGAGT--VLDRSMFAAV-EAA---GAQ--FV 102 (225)
T ss_dssp CCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTTSEEEEEC--CCSHHHHHHH-HHH---TCS--SE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHhCcccEEeeCe--EeeHHHHHHH-HHC---CCC--EE
Confidence 34467778888999999999999998642 34566788888888887766664 4677665332 222 322 44
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHc-CCcEE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLM 343 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~-gi~~~ 343 (412)
=-| ..|.+ ..+.++ ..++++..| +.++.++.++.+.| +|++.+=+.. .| +.-.+.++.... +++++
T Consensus 103 ~~p--~~d~~-v~~~~~----~~g~~~i~G--~~t~~e~~~A~~~G-ad~vk~FPa~~~~--G~~~lk~i~~~~~~ipvv 170 (225)
T 1mxs_A 103 VTP--GITED-ILEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISG--GVAAIKAFGGPFGDIRFC 170 (225)
T ss_dssp ECS--SCCHH-HHHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHT--HHHHHHHHHTTTTTCEEE
T ss_pred EeC--CCCHH-HHHHHH----HhCCCEEEe--eCCHHHHHHHHHCC-CCEEEEccCcccc--CHHHHHHHHhhCCCCeEE
Confidence 333 34443 333332 467888776 88999999988877 7998774421 11 122233444555 78988
Q ss_pred EccCc
Q 015161 344 IGGMV 348 (412)
Q Consensus 344 ~~~~~ 348 (412)
+-+-+
T Consensus 171 aiGGI 175 (225)
T 1mxs_A 171 PTGGV 175 (225)
T ss_dssp EBSSC
T ss_pred EECCC
Confidence 75543
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.79 E-value=2.4 Score=38.72 Aligned_cols=148 Identities=13% Similarity=0.052 Sum_probs=71.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChh-H--HHHHHHHHHHh-C--C-CcEEEEeCC---C-------CCCH---
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLK-E--DIEVLRAIRAV-H--P-DSSFILDAN---E-------GYKP--- 245 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~-~--D~~~v~avr~~-~--~-~~~l~vDaN---~-------~~~~--- 245 (412)
++.+++++. ++.+.|.. .+-+|...- . |.+.++.+.+. + . .+.+.+|+. + +|+.
T Consensus 82 gi~~~~~i~----~~~~~Gad--~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~ 155 (266)
T 2w6r_A 82 GAGKMEHFL----EAFLAGAD--KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTG 155 (266)
T ss_dssp CCCSTHHHH----HHHHHTCS--EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCHHHHH----HHHHcCCc--HhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecc
Confidence 344555533 33445754 445553222 3 55666665554 3 2 345778873 2 3421
Q ss_pred HHHHHHHHHHHcCCCCCceeec-----CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
....++++.+++.+....++-. ....-|++.++++++ .+++||.+.=-+.+++++.++.+.| +|.+.+=-
T Consensus 156 ~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~ed~~~~~~~G-adgv~vgs 230 (266)
T 2w6r_A 156 ILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAALAAS 230 (266)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHHT-CSEEEEST
T ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHcC-CHHHHccH
Confidence 1234555666666665334421 111235777777753 5789999988899999999999876 67776654
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEE
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~ 344 (412)
.-.+ -....++.++.++.|+++-.
T Consensus 231 al~~~~~~~~~~~~~l~~~g~~~~~ 255 (266)
T 2w6r_A 231 VFHFREIDMRELKEYLKKHGVNVRL 255 (266)
T ss_dssp TTC----------------------
T ss_pred HHHcCCCCHHHHHHHHHHCCCcccc
Confidence 4443 33455666777788887643
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.57 E-value=11 Score=37.99 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec---
Q 015161 192 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--- 267 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe--- 267 (412)
+..+.++.+.+.|...+-+... .....-.+.++.+++..|++.+.+ ...-+.++| +.+.+.|.. +|==
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~--g~v~t~e~a----~~l~~aGaD--~I~vg~g 300 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG--GNIATAEAA----KALAEAGAD--AVKVGIG 300 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE--EEECSHHHH----HHHHHTTCS--EEEECSS
T ss_pred chHHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEE--eeeCcHHHH----HHHHHcCCC--EEEECCC
Confidence 3456677788889999998766 334556788999999888877776 113456655 445556653 3321
Q ss_pred C-----------CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 268 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 268 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
| +...++..+.++.+.++ ..++||.++=-+.+..|+.+++..| +|.+++=
T Consensus 301 ~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~-~~~iPVIa~GGI~~~~di~kal~~G-Ad~V~vG 361 (490)
T 4avf_A 301 PGSICTTRIVAGVGVPQISAIANVAAALE-GTGVPLIADGGIRFSGDLAKAMVAG-AYCVMMG 361 (490)
T ss_dssp CSTTCHHHHHTCBCCCHHHHHHHHHHHHT-TTTCCEEEESCCCSHHHHHHHHHHT-CSEEEEC
T ss_pred CCcCCCccccCCCCccHHHHHHHHHHHhc-cCCCcEEEeCCCCCHHHHHHHHHcC-CCeeeec
Confidence 1 11234566677665432 4589999999999999999999998 5887764
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=85.41 E-value=20 Score=33.49 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC------CChhHHHHHHHHHHHh-C-CCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-H-PDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG------~~~~~D~~~v~avr~~-~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
+.+.-..+++++++.|-.-+-+-+. .+.+.-.+-+++++++ + +-+++++... -++.++-++.++...+.|.
T Consensus 124 ~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~-~Lt~eei~~A~~ia~eaGA 202 (288)
T 3oa3_A 124 STDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETS-QLTADEIIAGCVLSSLAGA 202 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGG-GCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECC-CCCHHHHHHHHHHHHHcCC
Confidence 4555577888999999999996654 3444445567778776 3 3367777664 5677776666666677776
Q ss_pred CCceeecCCCC-------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHH
Q 015161 261 TPVLFEQPVHR-------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIE 333 (412)
Q Consensus 261 ~~~~iEeP~~~-------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~ 333 (412)
.||=-..-. +|.+-++++.+.. ...++|-.-=-+.+.+++..+++.|+- ++|.+...++.+
T Consensus 203 --DfVKTSTGf~~~GAT~edv~lmr~~v~~~--g~~v~VKAAGGIrt~edAl~mi~aGA~--------RiGtS~g~~I~~ 270 (288)
T 3oa3_A 203 --DYVKTSTGFNGPGASIENVSLMSAVCDSL--QSETRVKASGGIRTIEDCVKMVRAGAE--------RLGASAGVKIVN 270 (288)
T ss_dssp --SEEECCCSSSSCCCCHHHHHHHHHHHHHS--SSCCEEEEESSCCSHHHHHHHHHTTCS--------EEEESCHHHHHH
T ss_pred --CEEEcCCCCCCCCCCHHHHHHHHHHHHHh--CCCceEEEeCCCCCHHHHHHHHHcCCc--------eeehhhHHHHHH
Confidence 487665321 2455555553210 234666333347899999999998853 568777888888
Q ss_pred HHHHcCCcE
Q 015161 334 VVRASGLNL 342 (412)
Q Consensus 334 ~A~~~gi~~ 342 (412)
-++..|+..
T Consensus 271 ~~~~~~~~~ 279 (288)
T 3oa3_A 271 ETRLGNRQV 279 (288)
T ss_dssp HHTC-----
T ss_pred HHHhcCCCC
Confidence 887777754
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=85.15 E-value=3.9 Score=36.79 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=74.4
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCC------CCCCH--HHHHHHHHH
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN------EGYKP--QEAVEVLEK 254 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN------~~~~~--~~A~~~~~~ 254 (412)
..++.++++ ++.+.+.|...+ -+|...-.+.+.+..+++. +..+.+.+|+. .+|.. .+..++++.
T Consensus 81 ~ggI~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~ 154 (244)
T 1vzw_A 81 SGGIRDDDT----LAAALATGCTRV--NLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDR 154 (244)
T ss_dssp ESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHH
T ss_pred ECCcCCHHH----HHHHHHcCCCEE--EECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHH
Confidence 334556654 445566786654 4553222334556555554 55566788875 34521 034456666
Q ss_pred HHcCCCCCceeec-----CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc---CCCCEEEe
Q 015161 255 LYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG---NLADVINI 318 (412)
Q Consensus 255 l~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~---~a~d~v~i 318 (412)
+++.++....+=. ....-+++.++++++ ..++||.++=-+.+.+++.++++. | +|.+.+
T Consensus 155 ~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~----~~~ipvia~GGI~~~~d~~~~~~~~~~G-adgv~v 221 (244)
T 1vzw_A 155 LNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA----ATDRPVVASGGVSSLDDLRAIAGLVPAG-VEGAIV 221 (244)
T ss_dssp HHHTTCCCEEEEEC-------CCCHHHHHHHHH----TCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEE
T ss_pred HHhCCCCEEEEeccCcccccCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHhhccCC-Cceeee
Confidence 6667665333321 112236778888764 568999999899999999999987 5 677654
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=9 Score=37.79 Aligned_cols=134 Identities=8% Similarity=0.066 Sum_probs=83.1
Q ss_pred eeceeecCCC-----HHHHHHHHHHHHHcCCCEEeEecC-C---------ChhHHHHHHHHHHHhC--------------
Q 015161 180 TTDITIPIVS-----PAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVH-------------- 230 (412)
Q Consensus 180 ~~~~~i~~~~-----~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~D~~~v~avr~~~-------------- 230 (412)
++..+++... ++++.+.++.+.+. ...|-+.++ + +.+.-.+.+++|+++.
T Consensus 183 ~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~ 261 (415)
T 3i65_A 183 IVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFL 261 (415)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred eEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 3444554433 56776666665443 778888877 1 2233344566666541
Q ss_pred -----CCcE-EEEeCCCCCCHHHHHHHHHHHHcCCCCCce-----eecC----------------CCCCCHHHHHHhHHH
Q 015161 231 -----PDSS-FILDANEGYKPQEAVEVLEKLYEMGVTPVL-----FEQP----------------VHRDDWEGLGHVSHI 283 (412)
Q Consensus 231 -----~~~~-l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~-----iEeP----------------~~~~d~~~~~~l~~~ 283 (412)
.+.. +.|--.-.|+.++..++++.+++.++.-.. .++. +.+-.++..+++++
T Consensus 262 ~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~- 340 (415)
T 3i65_A 262 WFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYN- 340 (415)
T ss_dssp CCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHH-
T ss_pred ccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHH-
Confidence 2455 677777778888888899998887653111 1211 00000123444443
Q ss_pred hhccc--CCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 284 AKDKF--GVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 284 ~~~~~--~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.. .+||.+.=-+.+.+|+.+++..| +|.+|+=
T Consensus 341 ---~v~~~iPIIg~GGI~s~eDa~e~l~aG-Ad~VqIg 374 (415)
T 3i65_A 341 ---YTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLY 374 (415)
T ss_dssp ---HTTTCSCEEECSSCCSHHHHHHHHHHT-EEEEEES
T ss_pred ---HhCCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 44 69999999999999999999988 5998874
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.68 E-value=22 Score=32.94 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCEEeEec-----------CCChhHHHHHH----HHHHHhCCCcE--EE--EeCC--CCCCHHHHHHHHHH
Q 015161 196 LASKYRKQGFTTLKLKV-----------GKNLKEDIEVL----RAIRAVHPDSS--FI--LDAN--EGYKPQEAVEVLEK 254 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKv-----------G~~~~~D~~~v----~avr~~~~~~~--l~--vDaN--~~~~~~~A~~~~~~ 254 (412)
.++++.+.|++.+-+-+ +.+.++.++++ +.+++.+-.+. |+ +++- ..++++++.++++.
T Consensus 84 ~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 34556677998888764 23456666654 33344443333 22 2221 35689999999998
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC-CeEEeC---CCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAAD---ESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~d---Es~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
+.+.|+....+=+..-.-..+...++-+.+++..+ +||... -+-.........++.| ++.++.-+
T Consensus 164 ~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG-~~~vd~sv 232 (295)
T 1ydn_A 164 LFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKG-LRVFDASV 232 (295)
T ss_dssp HHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHT-CCEEEEBT
T ss_pred HHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhC-CCEEEecc
Confidence 88887654456666655555556665555555665 677553 2223344567777777 56776655
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.94 E-value=6.5 Score=36.91 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCC--CC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPV--HR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~--~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
..++.++.+++++.|++.|+. +||.-. .+ .|.+ ++.+.+.+..+++++.- +.+.++++++++.|
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~l--~~~~~~i~~a~~aG- 96 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLD--YIEVGSFVSPKWVPQMAGSA---EVFAGIRQRPGVTYAAL--APNLKGFEAALESG- 96 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCS--EEEEEECSCTTTCGGGTTHH---HHHHHSCCCTTSEEEEE--CCSHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHHcCcC--EEEECCCcCccccccccCHH---HHHHHhhhcCCCEEEEE--eCCHHHHHHHHhCC-
Confidence 357899999999999999985 999742 11 1222 22222233457888653 25889999999987
Q ss_pred CCEEEe-cCCC---------C---c-HHHHHHHHHHHHHcCCcEE
Q 015161 313 ADVINI-KLAK---------V---G-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 313 ~d~v~i-k~~~---------~---G-it~~l~i~~~A~~~gi~~~ 343 (412)
++.+.+ +... . - +..+.+++++|+++|+.+.
T Consensus 97 ~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~ 141 (302)
T 2ftp_A 97 VKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR 141 (302)
T ss_dssp CCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 677776 3221 1 1 3456789999999999984
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=83.93 E-value=4.8 Score=38.65 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeec------CC--------CCCCHHHHHHhHHHhhcccCCeEEe--CCCCCCHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQ------PV--------HRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDV 304 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEe------P~--------~~~d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~ 304 (412)
..++.++-+++++.|.+.|+. .||= |. ..++++.++++++ ...+++|.. .-.....+++
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd--~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~---~~~~~~i~~l~~p~~~~~~~i 99 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVD--SIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAG---EISHAQIATLLLPGIGSVHDL 99 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHT---TCSSSEEEEEECBTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCcccCCCCCHHHHHHHHHh---hCCCCEEEEEecCCcccHHHH
Confidence 457899999999999999985 9998 32 2456777777654 223567643 2223457788
Q ss_pred HHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 305 KKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 305 ~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
+++.+.| +|.+.+-.. +- ...+.++++.|+++|+.+....
T Consensus 100 ~~a~~aG-vd~v~I~~~-~s~~~~~~~~i~~ak~~G~~v~~~~ 140 (345)
T 1nvm_A 100 KNAYQAG-ARVVRVATH-CTEADVSKQHIEYARNLGMDTVGFL 140 (345)
T ss_dssp HHHHHHT-CCEEEEEEE-TTCGGGGHHHHHHHHHHTCEEEEEE
T ss_pred HHHHhCC-cCEEEEEEe-ccHHHHHHHHHHHHHHCCCEEEEEE
Confidence 8888886 677766422 22 3467888899999999987764
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=83.70 E-value=12 Score=37.67 Aligned_cols=120 Identities=20% Similarity=0.267 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec---C
Q 015161 193 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---P 268 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe---P 268 (412)
..+.++.+.+.|...+-+... .+.+.-.+.++.+++.+|++.+.+ ...-+.++|. .+.+.|.. +|== |
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~--g~v~t~e~a~----~l~~aGaD--~I~Vg~g~ 303 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG--GNVATAEGAR----ALIEAGVS--AVKVGIGP 303 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE--EEECSHHHHH----HHHHHTCS--EEEECSSC
T ss_pred hHHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEE--cccCcHHHHH----HHHHhCCC--EEEECCCC
Confidence 356677788899999988776 233456678999999888877766 2233556553 34445543 3321 1
Q ss_pred -----------CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 269 -----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 269 -----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+...++..+.++.+..+ ..++||.++=-+.+..|+.+++..| +|.+++=-..
T Consensus 304 Gs~~~tr~~~g~g~p~~~~i~~v~~~~~-~~~iPVIa~GGI~~~~di~kala~G-Ad~V~iGs~f 366 (496)
T 4fxs_A 304 GSICTTRIVTGVGVPQITAIADAAGVAN-EYGIPVIADGGIRFSGDISKAIAAG-ASCVMVGSMF 366 (496)
T ss_dssp CTTBCHHHHHCCCCCHHHHHHHHHHHHG-GGTCCEEEESCCCSHHHHHHHHHTT-CSEEEESTTT
T ss_pred CcCcccccccCCCccHHHHHHHHHHHhc-cCCCeEEEeCCCCCHHHHHHHHHcC-CCeEEecHHH
Confidence 11224555666665332 4579999999999999999999988 5888765433
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=2.8 Score=37.71 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=74.8
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCC----------CCCCH--HHHHH
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDAN----------EGYKP--QEAVE 250 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN----------~~~~~--~~A~~ 250 (412)
..++.++++ ++.+.+.|-..+ -+|...-.+.+.+..+++. +..+.+.+|+. .+|.. ++..+
T Consensus 80 ~ggi~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e 153 (244)
T 2y88_A 80 SGGIRDDES----LAAALATGCARV--NVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWD 153 (244)
T ss_dssp ESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHH
T ss_pred ECCCCCHHH----HHHHHHcCCCEE--EECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHH
Confidence 334556654 445566786654 4453222334556555554 55566778875 14421 13456
Q ss_pred HHHHHHcCCCCCceee-----cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc---CCCCEEEe
Q 015161 251 VLEKLYEMGVTPVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG---NLADVINI 318 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~---~a~d~v~i 318 (412)
+++.++++++....+= +-...-+++.++++++ ..++||.++=-+.+.+++.++++. | +|.+.+
T Consensus 154 ~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~~~~G-ad~v~v 224 (244)
T 2y88_A 154 VLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVAD----RTDAPVIASGGVSSLDDLRAIATLTHRG-VEGAIV 224 (244)
T ss_dssp HHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHT----TCSSCEEEESCCCSHHHHHHHHTTGGGT-EEEEEE
T ss_pred HHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHhhccCC-CCEEEE
Confidence 6677777776533331 1112236777887763 568999998889999999999987 5 677654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=82.18 E-value=27 Score=31.14 Aligned_cols=140 Identities=12% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
..++++..+.++.+.+.|.+.+.+..-. ....+.++.+++.+++..+..+. -.+.+++... - +.+.. ++=
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~l~vgaGt--vl~~d~~~~A-~---~aGAd--~v~ 94 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPDFLIAAGT--VLTAEQVVLA-K---SSGAD--FVV 94 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEES--CCSHHHHHHH-H---HHTCS--EEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccC--chHHHHHHHHHHhCcCcEEeeCc--EeeHHHHHHH-H---HCCCC--EEE
Confidence 4567788888999999999999998642 34567788888888876666554 5566664222 2 23432 563
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHc-CCcEEE
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLNLMI 344 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~-gi~~~~ 344 (412)
-| ..|.+-.+..+ +.++++..| +.++.++.++.+.| +|++.+=+.. .|..+.+ .++.... ++++++
T Consensus 95 ~p--~~d~~v~~~ar-----~~g~~~i~G--v~t~~e~~~A~~~G-ad~vk~Fpa~~~gG~~~l--k~l~~~~~~ipvva 162 (224)
T 1vhc_A 95 TP--GLNPKIVKLCQ-----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMI--KALLGPYAQLQIMP 162 (224)
T ss_dssp CS--SCCHHHHHHHH-----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHH--HHHHTTTTTCEEEE
T ss_pred EC--CCCHHHHHHHH-----HhCCCEEec--cCCHHHHHHHHHCC-CCEEEEeeCccccCHHHH--HHHHhhCCCCeEEE
Confidence 33 34443233322 367887777 88999999999877 7998876543 3322222 2334445 789887
Q ss_pred ccCc
Q 015161 345 GGMV 348 (412)
Q Consensus 345 ~~~~ 348 (412)
-+-+
T Consensus 163 iGGI 166 (224)
T 1vhc_A 163 TGGI 166 (224)
T ss_dssp BSSC
T ss_pred ECCc
Confidence 5543
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=82.18 E-value=29 Score=33.72 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-------
Q 015161 194 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------- 265 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i------- 265 (412)
.+.++.+.+.|+..+-+..+ .+.+.-.+.++.+|+..|++.+.+- +..+.++| +.+.+.++....+
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~--~v~~~~~a----~~a~~~Gad~I~vg~~~G~~ 228 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAG--NIVTKEAA----LDLISVGADCLKVGIGPGSI 228 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEE--EECSHHHH----HHHHTTTCSEEEECSSCSTT
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEc--CCCcHHHH----HHHHhcCCCEEEECCCCCcC
Confidence 45566677889999887544 2345567788999998777888871 22345544 4555666541222
Q ss_pred ----e-cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 ----E-QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 ----E-eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ .....-+++.+.++.+.+ ...++||.++=-+.+..|+.+++..| +|.+++
T Consensus 229 ~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipVia~GGI~~~~d~~~ala~G-Ad~V~i 284 (404)
T 1eep_A 229 CTTRIVAGVGVPQITAICDVYEAC-NNTNICIIADGGIRFSGDVVKAIAAG-ADSVMI 284 (404)
T ss_dssp SHHHHHHCCCCCHHHHHHHHHHHH-TTSSCEEEEESCCCSHHHHHHHHHHT-CSEEEE
T ss_pred cCccccCCCCcchHHHHHHHHHHH-hhcCceEEEECCCCCHHHHHHHHHcC-CCHHhh
Confidence 0 111112455666665432 24589999998999999999999998 788876
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=81.98 E-value=2.2 Score=38.71 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=82.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCC-cEEEEeCC----------CCCCH---HHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDAN----------EGYKP---QEAVE 250 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~-~~l~vDaN----------~~~~~---~~A~~ 250 (412)
++.++++ ++++.+.|... +-+|...-.+.+.++.+++. +.+ +.+.+|++ .+|.. ....+
T Consensus 83 gi~~~~~----~~~~~~~Gad~--V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e 156 (252)
T 1ka9_F 83 GVRSLED----ARKLLLSGADK--VSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVE 156 (252)
T ss_dssp SCCSHHH----HHHHHHHTCSE--EEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHH
T ss_pred CcCCHHH----HHHHHHcCCCE--EEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHH
Confidence 3445543 44455568554 45553222333456666665 433 56888874 23431 12345
Q ss_pred HHHHHHcCCCCCceee-----cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 251 VLEKLYEMGVTPVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iE-----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
+++++++.+.....+= .....-|++.++++++ .+++||.+.=-+.+++++.++.+.| +|.+.+=-.-.+
T Consensus 157 ~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv~vgsal~~~ 231 (252)
T 1ka9_F 157 WAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAE----AVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFG 231 (252)
T ss_dssp HHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHH----HCSSCEEEESCCCSHHHHHHHHHTT-CSEEEESHHHHTT
T ss_pred HHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHCC-CHHHHHHHHHHcC
Confidence 5555655554422221 1111235777888764 5689999988889999999999766 677654211111
Q ss_pred HHHHHHHHHHHHHcCCcE
Q 015161 325 VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~ 342 (412)
-....++.+.++..|+++
T Consensus 232 ~~~~~~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 232 EIPIPKLKRYLAEKGVHV 249 (252)
T ss_dssp SSCHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHCCCCc
Confidence 112345556677788765
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=81.28 E-value=16 Score=33.74 Aligned_cols=90 Identities=19% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHHHHcCCCCCcee----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcH
Q 015161 250 EVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 325 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Gi 325 (412)
++++..++.|.. +| |+..-....+.++++++ .+++||--.+-+.+..++..+...| +|.+.+......-
T Consensus 83 ~~A~~y~~~GA~--~IsVltd~~~f~Gs~~~L~~ir~----~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~VlLi~a~L~~ 155 (272)
T 3tsm_A 83 ALAKAYEEGGAA--CLSVLTDTPSFQGAPEFLTAARQ----ACSLPALRKDFLFDPYQVYEARSWG-ADCILIIMASVDD 155 (272)
T ss_dssp HHHHHHHHTTCS--EEEEECCSTTTCCCHHHHHHHHH----TSSSCEEEESCCCSTHHHHHHHHTT-CSEEEEETTTSCH
T ss_pred HHHHHHHHCCCC--EEEEeccccccCCCHHHHHHHHH----hcCCCEEECCccCCHHHHHHHHHcC-CCEEEEcccccCH
Confidence 345555655532 33 44444456666777653 6789998877788888998888877 6898888776665
Q ss_pred HHHHHHHHHHHHcCCcEEEcc
Q 015161 326 LGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 326 t~~l~i~~~A~~~gi~~~~~~ 346 (412)
....++.+.|+..|+.+++-.
T Consensus 156 ~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 567888999999999987544
|
| >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0 | Back alignment and structure |
|---|
Probab=80.59 E-value=39 Score=32.03 Aligned_cols=158 Identities=11% Similarity=0.059 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHhCCCcEEEEeC-------CC-------CCCHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVHPDSSFILDA-------NE-------GYKPQEAVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~~~~~~l~vDa-------N~-------~~~~~~A~~~~~ 253 (412)
+.++..+.+..+.+.|++.|-.--.-......+.| ++++..-.++.|.-=. ++ .++++...+-++
T Consensus 50 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~R~~v~I~TK~g~~~~~~~~~~~~~~~~~~~~~i~~~~e 129 (348)
T 3n2t_A 50 DDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVE 129 (348)
T ss_dssp THHHHHHHHHHHHHTTCCEEECCTTGGGGHHHHHHHHHHHHSCCCCEEEEEECEEEESSSTTTCEEEECCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEChhhcCCChHHHHHHHHHhhCCCeEEEEEeecCCCcCCCcccccccCCCCHHHHHHHHH
Confidence 45677888888999999998754321111233333 3444322343332111 11 256655444332
Q ss_pred H-HHcCC---CCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcH
Q 015161 254 K-LYEMG---VTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV 325 (412)
Q Consensus 254 ~-l~~~~---l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Gi 325 (412)
. |+.++ +.++++-.|-+... ++.+.++.+ .|.==+.|=|.++.+.+.++++...++++|+..+-.--
T Consensus 130 ~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~Q~~~nl~~~ 204 (348)
T 3n2t_A 130 DSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQ-----DGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFER 204 (348)
T ss_dssp HHHHHHTCSSEEEEEESSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHSCCCEEECBCBTTBC
T ss_pred HHHHHhCCCcEEEEEecCCCCCCCHHHHHHHHHHHHH-----hCcceEEecCCCCHHHHHHHHHhCCccEEEeeecCccC
Confidence 2 44433 22246666654322 444444442 35444667788899999999988888999987665321
Q ss_pred HHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 326 LGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 326 t~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
..-.++..+|+++||.++..+.+..+
T Consensus 205 ~~e~~l~~~~~~~gi~v~a~spL~~G 230 (348)
T 3n2t_A 205 TIEKDILPYAEKHNAVVLAYGALCRG 230 (348)
T ss_dssp GGGGTHHHHHHHHTCEEEEBCTTGGG
T ss_pred chHHHHHHHHHHcCCeEEEeecccCc
Confidence 11246789999999999987766443
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=80.47 E-value=8.9 Score=38.80 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCceeec---
Q 015161 193 AAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--- 267 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~~iEe--- 267 (412)
..+.++.+.+.|+..+-+..+. +.+...+.++++++..|++.+.+ +. -+.++|. .+.+.|+. +|-=
T Consensus 256 ~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a~----~l~~aGad--~I~vg~~ 326 (514)
T 1jcn_A 256 DKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQAK----NLIDAGVD--GLRVGMG 326 (514)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHH----HHHHHTCS--EEEECSS
T ss_pred hHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHHH----HHHHcCCC--EEEECCC
Confidence 4567777888999999986662 34456788999999877877775 33 4456553 34444442 3300
Q ss_pred C--------C---CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 268 P--------V---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 268 P--------~---~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
| . .......+..+.+ .+...++||.++=-+.+..++.+++..| +|.+++=-
T Consensus 327 ~G~~~~t~~~~~~g~~~~~~~~~~~~-~~~~~~ipVia~GGI~~~~di~kala~G-Ad~V~iG~ 388 (514)
T 1jcn_A 327 CGSICITQEVMACGRPQGTAVYKVAE-YARRFGVPIIADGGIQTVGHVVKALALG-ASTVMMGS 388 (514)
T ss_dssp CSCCBTTBCCCSCCCCHHHHHHHHHH-HHGGGTCCEEEESCCCSHHHHHHHHHTT-CSEEEEST
T ss_pred CCcccccccccCCCccchhHHHHHHH-HHhhCCCCEEEECCCCCHHHHHHHHHcC-CCeeeECH
Confidence 1 0 0001122222222 2235689999999999999999999998 78887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 412 | ||||
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 3e-30 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 5e-29 | |
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 8e-27 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 4e-26 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 7e-24 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 3e-23 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 3e-21 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 4e-20 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 3e-19 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 8e-19 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 3e-18 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 5e-18 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 1e-16 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 6e-16 | |
| d1muca2 | 127 | d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (ci | 2e-15 | |
| d1jpma2 | 125 | d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacill | 2e-15 | |
| d1wufa2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 1e-14 | |
| d1wuea2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 3e-14 | |
| d2chra2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {A | 4e-14 | |
| d1r0ma2 | 127 | d.54.1.1 (A:6-132) N-acylamino acid racemase {Dein | 5e-14 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 1e-12 | |
| d1nu5a2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {P | 1e-12 | |
| d2gdqa2 | 115 | d.54.1.1 (A:4-118) Hypothetical protein YitF {Baci | 2e-12 | |
| d1jpdx2 | 116 | d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Esche | 2e-12 | |
| d1sjda2 | 125 | d.54.1.1 (A:1-125) N-acylamino acid racemase {Amyc | 6e-12 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 9e-12 | |
| d1tzza2 | 140 | d.54.1.1 (A:1006-1145) Hypothetical protein Bll673 | 1e-11 | |
| d2mnra2 | 130 | d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas | 3e-11 | |
| d2gl5a1 | 278 | c.1.11.2 (A:123-400) Putative dehydratase protein | 1e-10 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 2e-10 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 2e-10 | |
| d1bqga2 | 132 | d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseud | 7e-10 | |
| d2gl5a2 | 122 | d.54.1.1 (A:1-122) Putative dehydratase protein ST | 7e-10 | |
| d1jdfa2 | 133 | d.54.1.1 (A:5-137) D-glucarate dehydratase {Escher | 9e-10 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 2e-09 | |
| d1yeya2 | 139 | d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas c | 8e-09 | |
| d1rvka2 | 126 | d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {A | 6e-07 |
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 3e-30
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+ T T+ I +P + A AS + G LK+K+ + E + AIR PD++ I+
Sbjct: 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVPDATLIV 62
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++ + EQP+ D L + H + + ADES
Sbjct: 63 DANESWRAEGLAARCQLLADL--GVAMLEQPLPAQDDAALENFIH------PLPICADES 114
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + ++K + +++NIKL K G+ AL + RA G +LM+G M+ T A+
Sbjct: 115 CHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 172
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSEDP 382
A L F DLD P L+ D
Sbjct: 173 ALPLVPQ---VSFADLDGPTWLAVDV 195
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 111 bits (277), Expect = 5e-29
Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 7/230 (3%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSS 234
+T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR V
Sbjct: 3 DTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVK 62
Query: 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294
LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ + A
Sbjct: 63 LRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTP----IMA 118
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353
DES + ++++ AD+INIKL K G + GA +I + A G+ M+G M+ET+L
Sbjct: 119 DESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
+ A H +A D D PL+L D G SG+ G G
Sbjct: 179 ITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 228
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 8e-27
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 11/196 (5%)
Query: 190 PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 248
P + + G K++VG D V+ + PD LDAN + P +
Sbjct: 15 PDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKG 72
Query: 249 VEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 308
+ + + + S + G+++A DES R D
Sbjct: 73 QQFAKYVNPDYRDRI--AFLEEPCKTR---DDSRAFARETGIAIAWDESLREPDFAFVAE 127
Query: 309 KGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367
+G + IK + E ++ A GL +I +E+ L + ++A L
Sbjct: 128 EG--VRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPD 185
Query: 368 KFIDLDTPLLLSEDPV 383
LDT L+ V
Sbjct: 186 TIPGLDTLDLMQAQQV 201
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 4e-26
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 7/231 (3%)
Query: 186 PIVSPAEAAELASK-YRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGY 243
++P LA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 44 EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW 103
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
EA+++ + L E P + V + G+ A +
Sbjct: 104 SLNEAIKIGKYLKGS---LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ 160
Query: 304 VKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363
+ + D+ + G++ + ++ GL +++ H++A
Sbjct: 161 MGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAA 220
Query: 364 L-GCFKFIDLDTPLLLSEDPVLDG-YEVSGAVYKFTNARGHGGFLHWDNIA 412
G ID + +E+ G + + G G + D +
Sbjct: 221 APGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVM 271
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 97.4 bits (242), Expect = 7e-24
Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 23/220 (10%)
Query: 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA--------------V 229
+ A ++ K+G ++ +E ++ +R
Sbjct: 16 DRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIF 75
Query: 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT-PVLFEQPVHRDDW----EGLGHVSHIA 284
H D + A + + ++ L E + E P+ +D E + +
Sbjct: 76 HIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAEL 135
Query: 285 KDK-FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNL 342
+ + ADE C +++DVK ++ IK +G V + I +A+G+
Sbjct: 136 DGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGA 195
Query: 343 MIGG-MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
GG ET + ++ G + + + + E
Sbjct: 196 YCGGTCNETNRSAEVTTNIGMACGA-RQVLAKPGMGVDEG 234
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 95.4 bits (237), Expect = 3e-23
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 23/207 (11%)
Query: 197 ASKYRKQGFTTLKLKVGK---NLKEDIEVLR-AIRAV----------HPDSSFILDANEG 242
++ K+G L+E + L I ++ H D +
Sbjct: 29 VDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFD 88
Query: 243 YKPQEAVEVLEKLYEMGVT-PVLFEQPV----HRDDWEGLGHV-SHIAKDKFGVSVAADE 296
P E + L + P+ E PV D L + + + GV + ADE
Sbjct: 89 MDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADE 148
Query: 297 SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 354
C + D+ ++ IK +G + ++ + G+ GG ET ++
Sbjct: 149 WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISA 208
Query: 355 GFAGHLSAGLGCFKFIDLDTPLLLSED 381
H++ + + + E
Sbjct: 209 RTCVHVALAARP-MRMLIKPGMGFDEG 234
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 90.0 bits (222), Expect = 3e-21
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 12/239 (5%)
Query: 177 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 235
+I ++I + + +L ++Y QG+ +KLK+ N +DI+ + A+R P S
Sbjct: 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRKSFPKLSL 60
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+ DAN Y ++ + + EQP D+ + K + + D
Sbjct: 61 MADANSAYNREDFL---LLKELDQYDLEMIEQPFGTKDFVDHAWLQKQLKTRICL----D 113
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAM 354
E+ RS+ DV++ IN+KLA+V G+ AL+I E + + + GGM+E +
Sbjct: 114 ENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGR 173
Query: 355 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
L+A D+ + +ED V +E++ K G G L +
Sbjct: 174 AHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLK 232
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 86.6 bits (213), Expect = 4e-20
Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 11/243 (4%)
Query: 175 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIR-AVHP 231
V +++ T+ A AE + KLK+G N +++D++ + I+ +
Sbjct: 2 VRDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGD 61
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+S +D N+ + +A+ + L + L EQP+ R + +
Sbjct: 62 SASVRVDVNQYWDESQAIRACQVLGDN--GIDLIEQPISRINR----GGQVRLNQRTPAP 115
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKL-AKVGVLGALEIIEVVRASGLNLMIGGMVET 350
+ ADES S++D + A + +K+ G L ++ A+G+ L G M+E
Sbjct: 116 IMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEG 175
Query: 351 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409
+ + H L + +L PLLL+E+ V + + G G L
Sbjct: 176 SIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQ 235
Query: 410 NIA 412
+A
Sbjct: 236 RLA 238
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 84.3 bits (207), Expect = 3e-19
Identities = 48/243 (19%), Positives = 96/243 (39%), Gaps = 11/243 (4%)
Query: 175 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 231
+ + I T+ ++ K+K+G ++ ++D+ + A+ ++
Sbjct: 2 LRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGS 61
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+ +D N+ + Q A + L EQPV R++ D V+
Sbjct: 62 KAYLRVDVNQAWDEQVASVY--IPELEALGVELIEQPVGRENT----QALRRLSDNNRVA 115
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVET 350
+ ADES +L + + DV ++KL +G + +I V ASG+ G M+++
Sbjct: 116 IMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDS 175
Query: 351 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409
+ A L + + F +L P +L++ + E+ + GHG L D
Sbjct: 176 TIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDED 235
Query: 410 NIA 412
+
Sbjct: 236 KVR 238
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 83.1 bits (204), Expect = 8e-19
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 177 NTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 235
+ +++ I + +A +L ++ +QG+ +KLK+ D++ +RA R PD
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRATREAFPDIRL 60
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+DAN Y + EQP+ DD + + D
Sbjct: 61 TVDANSAYTLA---DAGRLRQLDEYDLTYIEQPLAWDDL----VDHAELARRIRTPLCLD 113
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAM 354
ES S D +K + VIN+K+A+VG + + +V ++ G + GGM+E+ +
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 355 GFAGHLSAGLGCFKFIDL-DTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
HLS D D + + E + G G L + +A
Sbjct: 174 AHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 81.2 bits (199), Expect = 3e-18
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 12/239 (5%)
Query: 177 NTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSF 235
I I++ I + + ++G+ +KLK+ D+E + IR P+
Sbjct: 3 RKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVALIRQHFPNLPL 60
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
++DAN Y + ++ + + EQP DD+ + + + D
Sbjct: 61 MVDANSAYTLADLPQLQRLDHYQ---LAMIEQPFAADDF----LDHAQLQRELKTRICLD 113
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354
E+ RSL D + + IN+K+ + G+ AL+I + + L + +GGM E+ +
Sbjct: 114 ENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGR 173
Query: 355 GFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
++ D+ T ED + + + + G G L N+
Sbjct: 174 ALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 80.7 bits (198), Expect = 5e-18
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 13/230 (5%)
Query: 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 247
S + LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ +
Sbjct: 15 SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGP 74
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307
A++ + +L E + E+P DD G + V V+ E ++ K++
Sbjct: 75 AIDWMRQLAEFDIAW--IEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQL 129
Query: 308 VKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 366
++ D+I I A+VG V L I+ + G+ + + HL+
Sbjct: 130 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCEL--VQHLAMADFV 187
Query: 367 FKFIDLDTPLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
++ + LD + Y G +H +IA
Sbjct: 188 AITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIA 237
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 76.6 bits (187), Expect = 1e-16
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 10/240 (4%)
Query: 175 VSNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS 233
V +++ +++ I+ + + ++ Y +G+ +KLK+ D+E +RA+R D
Sbjct: 1 VRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAVRERFGDD 58
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293
+ L +L +L EQP+ +D G + + +
Sbjct: 59 VLLQVDANTAYTLGDAPQLARLDPF--GLLLIEQPLEEEDVLGHAEL----ARRIQTPIC 112
Query: 294 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352
DES S +K ++NIK +VG L A + +V A G+ + GGM+ET L
Sbjct: 113 LDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGL 172
Query: 353 AMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
L++ D + + + + +SG G G + +
Sbjct: 173 GRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLD 232
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 74.7 bits (182), Expect = 6e-16
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 11/243 (4%)
Query: 175 VSNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHP 231
+ +I T+ A + K+K+G + +D+E +R+I +AV
Sbjct: 2 MRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGD 61
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+S +D N+G+ Q A + +L E GV V P ++ GV+
Sbjct: 62 RASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGAL------RRLTEQNGVA 115
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350
+ ADES SL ++ + + D ++KL +G + L++ V A+G++ G M+++
Sbjct: 116 ILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDS 175
Query: 351 RLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409
+ A H+ A L + +L P +L + E+ G G L D
Sbjct: 176 TVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHD 235
Query: 410 NIA 412
+
Sbjct: 236 KVR 238
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Score = 70.7 bits (172), Expect = 2e-15
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+KA+ + +A ++ + L + + ++ +E AL+DA K + +P
Sbjct: 63 GIKANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTF--AKSGIESALLDAQGKRLGLP 120
Query: 168 LWRLFGG 174
+ L GG
Sbjct: 121 VSELLGG 127
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 70.3 bits (171), Expect = 2e-15
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE-DQQT 106
+ R E + VPL PF A + E+V +RI +G VGWGEAP +T +
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
L ++ + LL G+ A +AAVEMAL D A+ +
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA-----KAAVEMALYDGWAQMCGL 117
Query: 167 PLWRLFGG 174
PL+++ GG
Sbjct: 118 PLYQMLGG 125
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 67.9 bits (165), Expect = 1e-14
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
Q+A +PL+APF + L + I + G G+GE P T E
Sbjct: 3 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVS 165
+A++ E L + + + G++ A +AAVE+A+ DA AK
Sbjct: 63 SAILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEMA-----KAAVELAVWDAFAKMEK 117
Query: 166 MPLWRLFG 173
L ++ G
Sbjct: 118 RSLAKMIG 125
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 66.9 bits (162), Expect = 3e-14
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQ 105
+Q E + +PL PF + RL++ I G G+GE E
Sbjct: 3 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVS 165
T + L + A+ + + GH +AA+E A+ D AK
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMG-----KAALETAIWDLYAKRQQ 117
Query: 166 MPLWRLFG 173
L FG
Sbjct: 118 KSLTEFFG 125
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 66.5 bits (161), Expect = 4e-14
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ E ++VP P ++ + + Q V +R+ S G VG GE + +
Sbjct: 3 IDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+K + +V G + + + +AAVEMAL+D A+++ +
Sbjct: 62 TIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNAS--AKAAVEMALLDLKARALGVS 119
Query: 168 LWRLFGG 174
+ L GG
Sbjct: 120 IAELLGG 126
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 66.4 bits (161), Expect = 5e-14
Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ AE +PL F + + I G G E + ++ A
Sbjct: 5 IEAAEIVVARLPLKFRFETSFGVQTHKVVP-LLILHGEGVQGVAEGTMEARPMYREETIA 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
L PA+ + A + RA VEMA D A+++ +P
Sbjct: 64 GALDLLRGTFL---PAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVP 120
Query: 168 LWRLFGG 174
L L GG
Sbjct: 121 LGTLLGG 127
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 15/230 (6%)
Query: 189 SPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQ 246
+ Y +G+ +K+K+G ++ED + A+ + D+ +DAN + +
Sbjct: 20 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLE 79
Query: 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306
+ + L + +E+ D+ ++ + + ++
Sbjct: 80 TGIAYAKMLRDY--PLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY 137
Query: 307 IVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL---MIGGMVETRLAMGFAGHLSA 362
D + A G+ +EV++ G + + G + L + L
Sbjct: 138 GGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLNIAAGLGLG- 196
Query: 363 GLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
G + DL P D V V + G G D
Sbjct: 197 --GNESYPDLFQPYGGFPDGV----RVENGHITMPDLPGIGFEGKSDLYK 240
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 62.2 bits (150), Expect = 1e-12
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ ++VP P ++ + + + V ++++ + G VG GE + T +
Sbjct: 3 IEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAE 61
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+K L S L L +AA+++AL D A+++++
Sbjct: 62 TIKVI-IDNYLAPLLVGKDASNLSQARVL-MDRAVTGNLSAKAAIDIALHDLKARALNLS 119
Query: 168 LWRLFGG 174
+ L GG
Sbjct: 120 IADLIGG 126
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 14/127 (11%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R E PL L P+ A IRI +G GWGE
Sbjct: 3 IVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFTKR 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
++ + + + HQ A +AV MAL + AK+
Sbjct: 63 IIPFLLGKQAGSRLSLVRT---------IQKWHQRA-----ASAVSMALTEIAAKAADCS 108
Query: 168 LWRLFGG 174
+ L+GG
Sbjct: 109 VCELWGG 115
|
| >d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (148), Expect = 2e-12
Identities = 27/120 (22%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
PL PF IA + V + +E G G GE P D S
Sbjct: 10 FEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSV 68
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
++ K L + A R A++ AL D A+ L L G
Sbjct: 69 VPQLEKGLTREELQKILP--------AGAA-----RNALDCALWDLAARRQQQSLADLIG 115
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 60.3 bits (145), Expect = 6e-12
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQT 106
+ E R + +PL+APF + E + +R G P ++E
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDG 62
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
A + + + GH+ A + A+EMA++DA ++
Sbjct: 63 AEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMA-----KGALEMAVLDAELRAHER 117
Query: 167 PLWRLFG 173
G
Sbjct: 118 SFAAELG 124
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 62.8 bits (151), Expect = 9e-12
Identities = 29/231 (12%), Positives = 72/231 (31%), Gaps = 11/231 (4%)
Query: 189 SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247
+ + K+GF +K+K+G + KED+ + A++ S ++
Sbjct: 21 WISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAA 80
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307
A E+ + E+P+ D + + E+ + +
Sbjct: 81 AAFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAG----GENMKGPAQYVPL 136
Query: 308 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367
+ D+I + V + + + L+ +A A L +
Sbjct: 137 LSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAHAYDGSLSRLYALFAQACLPPW 196
Query: 368 KFIDLDTPLLLSEDPVLDGY------EVSGAVYKFTNARGHGGFLHWDNIA 412
+ D + D + + + + S + +G G ++ + +
Sbjct: 197 SKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIVN 247
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 13/132 (9%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + P+ +P A ++ + + G + Q +++
Sbjct: 7 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERF 66
Query: 114 ACEVLKESPAMALGSVFGVV-----------AGLLPGHQFASQLKVRAAVEMALIDAVAK 162
A +L+ P L + GH S ++MA+ DAVAK
Sbjct: 67 ASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAV--GTIDMAVWDAVAK 124
Query: 163 SVSMPLWRLFGG 174
PL+RL
Sbjct: 125 IAGKPLFRLLAE 136
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 58.7 bits (141), Expect = 3e-11
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 3/127 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+ R +NVPL P A + V I + S G VG V + +
Sbjct: 4 ITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQL 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
+ + ++ P + + A ++MA DA+ K P
Sbjct: 64 L---DDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETP 120
Query: 168 LWRLFGG 174
L +L G
Sbjct: 121 LVKLLGA 127
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 59.7 bits (143), Expect = 1e-10
Identities = 37/258 (14%), Positives = 82/258 (31%), Gaps = 33/258 (12%)
Query: 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------------------KNLK 217
D +V+P E AE A G+ +K+ LK
Sbjct: 19 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 78
Query: 218 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276
+ A+R A+ D+ I++ + A++ + + + L+E+P+H + +
Sbjct: 79 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKY--RIFLYEEPIHPLNSDN 136
Query: 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 336
+ VS + +A E + +++++ V L G + + I
Sbjct: 137 MQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYA 192
Query: 337 ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF--IDLDTPLLLSEDPVLDGYEVSGAVY 394
+ + ++ A H+ + F + + Y+ Y
Sbjct: 193 NIYDTTVQVHVCGGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYY 252
Query: 395 KFTNARGHGGFLHWDNIA 412
G G L+ + +
Sbjct: 253 VAPEQPGLGQELNDEVVK 270
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 55.3 bits (133), Expect = 2e-10
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 18/110 (16%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM 108
+ A+ +P+ A + RL + + + + GWGE LP + E + A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 109 VKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALID 158
+AG Q S V V AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPS---VAFGVSCALAE 95
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 58.2 bits (139), Expect = 2e-10
Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 19/227 (8%)
Query: 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIRA 228
S ++ + +P + A K+G+ +KL ++K D++ A+R
Sbjct: 10 SIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVRE 69
Query: 229 VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
++ + + L + + E+P+ ++ +
Sbjct: 70 AVGPDIRLMIDAFHWYSRTDALALGR-GLEKLGFDWIEEPMDEQSLS---SYKWLSDNLD 125
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGM 347
V + + + +K D++ + V G+ AL+ + + A G+ + G
Sbjct: 126 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVHGN 185
Query: 348 VETRLAMGFAGHLSAGLGCF------KFIDLDTPLLLSEDPVL-DGY 387
L + A ++ D L DP+ DG+
Sbjct: 186 TAMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDRDGF 232
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Score = 54.7 bits (131), Expect = 7e-10
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + + + S+G VG GE P + + + +++
Sbjct: 12 PVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEGIRKTLEDARHLLINQS 71
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLF 172
+ + G F ++ V A AVE AL+D + + + +P+ L
Sbjct: 72 IGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALL 131
Query: 173 G 173
G
Sbjct: 132 G 132
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 54.5 bits (130), Expect = 7e-10
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + + V IR+ +G G GE + A+ ++
Sbjct: 5 SIEVFDCELKKRDQT------MSSYNPVLIRVNTDSGLSGIGEVGLAYGAGAK-AGVGII 57
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ V ++ + F +A+++AL D K + +P++
Sbjct: 58 RDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVY 117
Query: 170 RLFGG 174
+L GG
Sbjct: 118 QLLGG 122
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (130), Expect = 9e-10
Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P+ ++ + + I+ ++G G GE P + + + +
Sbjct: 13 PVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKT 72
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLF 172
K + + AG F + + +E A++D + + + + + L
Sbjct: 73 LGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLL 132
Query: 173 G 173
G
Sbjct: 133 G 133
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 55.0 bits (131), Expect = 2e-09
Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 16/231 (6%)
Query: 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIR-AVHPDSSFILDANE 241
+ + A E A + GF +K K+G L +D+ V+R+IR AV D ++D N+
Sbjct: 7 SHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQ 66
Query: 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 301
A++ + L + E+P + D+EG + +
Sbjct: 67 SLDVPAAIKRSQALQQE--GVTWIEEPTLQHDYEGHQRIQSKLNVPV---QMGENWLGPE 121
Query: 302 DDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361
+ K + G + + GV G + + + G+ + E + A +
Sbjct: 122 EMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTA 181
Query: 362 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412
+ +DL ++ G + G G I
Sbjct: 182 ---HWLERLDLAGSVIEPTLTFEGGN------AVIPDLPGVGIIWREKEIG 223
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 51.7 bits (123), Expect = 8e-09
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 12/135 (8%)
Query: 52 ENRPLNVPLIAP--FTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
E + P + A + + + G V D QTA V
Sbjct: 7 ETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAAV 66
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR--------AAVEMALIDAVA 161
A E + + + G A L L AV A D A
Sbjct: 67 AA--LAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAA 124
Query: 162 KSVSMPLWRLFGGVS 176
++ + PLWR ++
Sbjct: 125 RAANKPLWRFIAELT 139
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 46.0 bits (108), Expect = 6e-07
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 11/125 (8%)
Query: 54 RPLNVPLIAPFTIATSRLD----QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R A QVE + + +G G E + ++
Sbjct: 9 RVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHS------FTAPEIVRPHVI 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLW 169
+ +VL ++ +A G + A V+ AL D +S+ P++
Sbjct: 63 EKFVK-KVLIGEDHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVY 121
Query: 170 RLFGG 174
+L GG
Sbjct: 122 KLIGG 126
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.97 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.96 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.96 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.94 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.94 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.93 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.92 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.92 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.91 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.91 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.91 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.9 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.9 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.9 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.87 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.86 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.85 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.85 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.8 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.69 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 99.31 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 99.3 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 99.23 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 99.23 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 99.19 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.9 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 98.71 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.68 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 98.44 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 98.27 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 98.25 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 97.62 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 97.57 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 96.96 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.59 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 96.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 94.69 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 94.62 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.39 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 93.91 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 93.23 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 92.06 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 87.21 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 86.34 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 84.98 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 84.07 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 82.15 |
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=2.7e-49 Score=370.61 Aligned_cols=231 Identities=23% Similarity=0.311 Sum_probs=213.5
Q ss_pred CCeeeeceeecCCCHHHHHHHHHH-HHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015161 176 SNTITTDITIPIVSPAEAAELASK-YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~~~~~~~-~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~ 252 (412)
+++||+|++++..++++..+++.+ +.++||++||+|+| .++++|+++++++|+. ++++.|++|+|++|++++|++++
T Consensus 3 rd~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (242)
T d1muca1 3 RDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRAC 82 (242)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHH
T ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHH
Confidence 578999999999988887666655 44689999999998 4689999999999997 78999999999999999999999
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHH
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 331 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i 331 (412)
+.|+++++. |||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +|+++++
T Consensus 83 ~~l~~~~i~--~iEeP~~~~d~~~~~~L~~----~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (242)
T d1muca1 83 QVLGDNGID--LIEQPISRINRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 156 (242)
T ss_dssp HHHHHTTCC--CEECCBCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhhhhhHH--Hhhcchhhhhhhhhhhhhh----hhhheeecccccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence 999999984 9999999999999999975 67899999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCcee-cccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI-DLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 332 ~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~-e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+++|+++|+++++|++.+++|++++++|++++++++.+. +++++..+.+++++++++++||++.+|++||||+++|+|+
T Consensus 157 ~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~d~ 236 (242)
T d1muca1 157 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQR 236 (242)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCTTCBCCCGGGGBSSCSBSSCCEEETTEEECCCCSBTSCCBCHHH
T ss_pred HHHHHhCCCCcccccccccccchhhhhhHHhhccccccccccCchhhhhhhhccCCCeEECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999998875 4667777888999999999999999999999999999997
Q ss_pred CC
Q 015161 411 IA 412 (412)
Q Consensus 411 ~~ 412 (412)
|+
T Consensus 237 l~ 238 (242)
T d1muca1 237 LA 238 (242)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=3.8e-49 Score=370.04 Aligned_cols=231 Identities=23% Similarity=0.349 Sum_probs=212.6
Q ss_pred CCeeeeceeecCCCHHH-HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015161 176 SNTITTDITIPIVSPAE-AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 176 ~~~i~~~~~i~~~~~~~-~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~ 252 (412)
+++||+|++++..++++ +.+.++.+.++||++||+|+| .++++|+++|+++|++ ++++.|++|+|++|++++|++++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYI 82 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHH
Confidence 56899999998876655 566667777789999999998 6899999999999997 78999999999999999999999
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHH
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 331 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i 331 (412)
++|+++++ .|+|||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 83 PELEALGV--ELIEQPVGRENTQALRRLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHTTTC--CEEECCSCSSCHHHHHHHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHhhhhH--HHHhhhhhhccchhhhhhcc----ceeeeeeecccccccchhhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999997 49999999999999999985 67999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 332 ~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+++|+++|+++++|++.+++|+.++++|++++++++.+ .++.+++.+.++++.+++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~ 236 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDK 236 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHH
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCcceeccCchhhhhhhcccCCceeECCEEECCCCCCCCeEECHHH
Confidence 99999999999999999999999999999999999876 45667777778888888999999999999999999999997
Q ss_pred CC
Q 015161 411 IA 412 (412)
Q Consensus 411 ~~ 412 (412)
|+
T Consensus 237 l~ 238 (244)
T d2chra1 237 VR 238 (244)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=1e-48 Score=366.92 Aligned_cols=231 Identities=25% Similarity=0.378 Sum_probs=211.8
Q ss_pred CCeeeeceeecCCCHHHH-HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHH
Q 015161 176 SNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~-~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~ 252 (412)
+++||+|++++..++++. .+.++.+.++||++||+|+| .++++|+++|+++|++ ++++.|++|+|++|++++|++++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 82 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHH
Confidence 568999999987766654 55556666789999999998 6899999999999997 78999999999999999999999
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHH
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 331 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i 331 (412)
+.|+++++. |+|||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~~~--~iEeP~~~~~~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 83 PRLEEAGVE--LVEQPVPRANFGALRRLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHTCC--EEECCSCTTCHHHHHHHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhcchhhh--hhhhhhhhccccccccchh----ccccccccccccccchhhhhccccccccccccccccccchHHHHHH
Confidence 999999974 9999999999999999975 67899999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 332 ~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+++|+++|+++++|++++++|+.++++|+++++|++.+ .++.+++.+.++++.++++++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGv~~d~d~ 236 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDK 236 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCceeeecCchHHhhhhcccCCCeEECCEEECCCCCCcCeeECHHH
Confidence 99999999999999999999999999999999999887 45666766778888999999999999999999999999997
Q ss_pred CC
Q 015161 411 IA 412 (412)
Q Consensus 411 ~~ 412 (412)
|+
T Consensus 237 l~ 238 (243)
T d1nu5a1 237 VR 238 (243)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.5e-47 Score=355.29 Aligned_cols=226 Identities=38% Similarity=0.574 Sum_probs=214.7
Q ss_pred CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 015161 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 253 (412)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~ 253 (412)
+++|++++++++.+|+++.+++++++++||++||+|+|. ++++|+++++++|++ ++++.|++|+|++|+.++|+++++
T Consensus 2 r~~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~ 81 (234)
T d1jpma1 2 RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIR 81 (234)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHH
T ss_pred CCcceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHH
Confidence 568999999999999999999999999999999999994 899999999999997 799999999999999999999999
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHH
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 332 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~ 332 (412)
.|+++++.+.|+|||++++|++++++|++ ++++||+.||++++..++.++++.+++|++|+|++++| ++++++++
T Consensus 82 ~le~~~~~i~~~EeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~ 157 (234)
T d1jpma1 82 KMEDAGLGIELVEQPVHKDDLAGLKKVTD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKIN 157 (234)
T ss_dssp HHHHTTCCEEEEECCSCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhccCceeeecCCccccCHHHHHHhhc----cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHH
Confidence 99987665579999999999999999975 67999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccc
Q 015161 333 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 405 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ 405 (412)
++|+++|+++++|++++++++.++++|+++++++..++|+++|+.+.++++.++++++||++.+|++||||+-
T Consensus 158 ~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~~p~~pGLGi~ 230 (234)
T d1jpma1 158 AMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGII 230 (234)
T ss_dssp HHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEE
T ss_pred HHHHhcCeeEeecccccCCchHHHHHHHHHhccCCceeecCCchhhhhhccCCCceEECCEEECCCCCeeeeE
Confidence 9999999999999999999999999999999999999999999888889999899999999999999999973
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=2.3e-47 Score=357.81 Aligned_cols=227 Identities=25% Similarity=0.391 Sum_probs=209.2
Q ss_pred CCeeeeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 176 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 176 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+++||+|+|+++. +++++.+++++++++||++||+|+|+ ++|+++++++|++.|++.||+|+|++|+.++|+ ++++
T Consensus 2 r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~-~~~~ 78 (244)
T d1wufa1 2 KESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDFL-LLKE 78 (244)
T ss_dssp CSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGHH-HHHT
T ss_pred CCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cHHHHHHHHHHHhccchhhhhhhhccccchhhh-hhhc
Confidence 5789999999984 89999999999999999999999997 569999999999988999999999999999997 5688
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
++++++ .|||||++++|++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~wiEeP~~~~d~~~~~~l~~----~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~ 152 (244)
T d1wufa1 79 LDQYDL--EMIEQPFGTKDFVDHAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAE 152 (244)
T ss_dssp TGGGTC--SEEECCSCSSCSHHHHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHH
T ss_pred ccccch--hhhcCcccccchhhhhcccc----ccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHHH
Confidence 999997 49999999999999999974 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC-CcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT-PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~-p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++|+++++|++.+++++.++++|+++..++....++.. +..+.++++.++++++||++.+|++||||+++|++.|
T Consensus 153 ~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~i~~p~~pGLGie~d~~~l 231 (244)
T d1wufa1 153 YCALNEILVWCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVL 231 (244)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCCccHHHHHHHHHHhccCccchhhhcccchhhhhhccCCCceEECCEEECCCCCCcCeeECHHHH
Confidence 99999999999999999999999999999988876666543 3445678888899999999999999999999999876
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.4e-47 Score=362.34 Aligned_cols=230 Identities=16% Similarity=0.221 Sum_probs=209.0
Q ss_pred CCeeeeceee----------cCCCHHHHHHHHHHHHHcCCCEEeEecCC------------------------ChhHHHH
Q 015161 176 SNTITTDITI----------PIVSPAEAAELASKYRKQGFTTLKLKVGK------------------------NLKEDIE 221 (412)
Q Consensus 176 ~~~i~~~~~i----------~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~------------------------~~~~D~~ 221 (412)
+++|++|+|. ...+|+++++.+++++++||+++|++++. +++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 5789999884 13589999999999999999999998652 3578999
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 222 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 222 ~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
+|+++|++ |+++.||+|+|++|+.++|+++++.|+++++ .|+|||++++|++++++|++ ++++||++||++++
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l--~wiEePi~~~d~~~~~~L~~----~~~ipIa~gE~~~~ 156 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYT 156 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCT
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhccccc--ceecccccccchhhhhhhcc----ccccceecccccCC
Confidence 99999997 8999999999999999999999999999997 59999999999999999975 68899999999999
Q ss_pred HHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC-c-c
Q 015161 301 LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-L-L 377 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p-~-~ 377 (412)
..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. +++|+.++++|++++++|+.++|+... . .
T Consensus 157 ~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~~H~~-~~~i~~~a~~hl~aa~~n~~~~e~~~~~~~~ 235 (278)
T d2gl5a1 157 RWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKA 235 (278)
T ss_dssp THHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCH
T ss_pred hHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhccccccccc-cCchhhhhhhhhhhccCceeeeeccccchhh
Confidence 999999999999999999999997 99999999999999999999985 799999999999999999998886532 2 2
Q ss_pred cccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 378 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 378 ~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
..+++++++++++||++++|++||||+++|++.|+
T Consensus 236 ~~~~l~~~~~~~~~G~~~~p~~PGLGie~de~~l~ 270 (278)
T d2gl5a1 236 SIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK 270 (278)
T ss_dssp HHHTTBSSCCCCBTTEECCCCSSBTSCCBCHHHHT
T ss_pred hHHhhccCCCeeeCCEEECCCCCCCceeeCHHHHh
Confidence 34678888999999999999999999999999764
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=1.2e-46 Score=352.36 Aligned_cols=227 Identities=23% Similarity=0.327 Sum_probs=206.8
Q ss_pred CCeeeeceeecC-CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 015161 176 SNTITTDITIPI-VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 253 (412)
Q Consensus 176 ~~~i~~~~~i~~-~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~ 253 (412)
+++||+|+|++. .+++++.++++++.++||++||+|+|. ++|+++++++|++ ++++.||+|+|++|+.++|+++.+
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~ 79 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 79 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHT
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHHhh
Confidence 568999999986 489999999999999999999999985 6799999999997 899999999999999999999875
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHH
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 332 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~ 332 (412)
|+++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++
T Consensus 80 -l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~ 152 (242)
T d1sjda1 80 -LDPFGL--LLIEQPLEEEDVLGHAELAR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVH 152 (242)
T ss_dssp -TGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred -hhhhhh--HHHHhhhhhhhHHHHHHHHh----ccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHH
Confidence 999987 49999999999999999974 78999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 333 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++|+++|+++++|++.++++++++++|+++..++....+...+..+.++.+++++.++||++.+|++||||+++|+|.|
T Consensus 153 ~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGLGie~d~~~l 231 (242)
T d1sjda1 153 DVCAAHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELL 231 (242)
T ss_dssp HHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTBCSCBSCCCGGGTCSSCSSSCCCCSSSEEECCCSSBTSCCCCHHHH
T ss_pred HHHHHCCCEEeecccccchhHHHHHHHHhhccccccccccccchhhhHhhccCCCeEECCEEECCCCCCCcEEECHHHH
Confidence 9999999999999999999999999999765544444556666656677788888999999999999999999999876
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=7.8e-47 Score=353.92 Aligned_cols=227 Identities=23% Similarity=0.340 Sum_probs=208.6
Q ss_pred CCeeeeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 176 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 176 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+++|++|.+++.. +++++.++++++.++||++||+|+|. +.|+++++++|++.|++.|++|+|++||.++|+++ +.
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~D~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~-~~ 78 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL-RQ 78 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HT
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc--chhHHHHHHHHHhccCceEEEeccccCchHHHHHh-hh
Confidence 5789999999875 67888999999999999999999996 46999999999998899999999999999999876 88
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~ 152 (243)
T d1r0ma1 79 LDEYDL--TYIEQPLAWDDLVDHAELAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHD 152 (243)
T ss_dssp TGGGCC--SCEECCSCTTCSHHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHH
T ss_pred hhhccc--hhhhhhccccchHHHHHHhh----cCCcccccccchhhhhhhhhhhhcccccceecccceeccHHHHHHHHH
Confidence 999987 49999999999999999975 68999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc-CCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD-TPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~-~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++|+++++|++++++++.++++|++++.++..+.++. .+..+.++++.++++++||++.+|++||||+++|+|+|
T Consensus 153 ~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~~p~~pGlGie~d~~~l 231 (243)
T d1r0ma1 153 VAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFL 231 (243)
T ss_dssp HHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHH
T ss_pred HHHHCCCceecccccccchhhhHHHHHHhhccccccccccccchhhhhhhcCCCCeeECCEEECCCCCCCcEeECHHHH
Confidence 9999999999999999999999999999988887766654 34446678888999999999999999999999999876
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=2.1e-46 Score=350.46 Aligned_cols=228 Identities=21% Similarity=0.325 Sum_probs=207.0
Q ss_pred CCeeeeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 176 SNTITTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 176 ~~~i~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+++||+|+++++. +++++.++++++.++||++||+|+|+ ++|+++++++|+.++++.|++|+|++|+.++|+++ .+
T Consensus 2 r~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~D~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~-~~ 78 (241)
T d1wuea1 2 RRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADLPQL-QR 78 (241)
T ss_dssp CSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HG
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cHHHHHHHHHHHhccccceeecccccCCHHHhhhh-hh
Confidence 5789999998875 78899999999999999999999986 57999999999998999999999999999999876 56
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
+.++++ .|||||++++|++++++|++ .+++||++||++++..++.++++.+++|++|+|++++| +++++++++
T Consensus 79 ~~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~ 152 (241)
T d1wuea1 79 LDHYQL--AMIEQPFAADDFLDHAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAA 152 (241)
T ss_dssp GGGSCC--SCEECCSCTTCSHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred hhhhhh--hhhcCcccccchhhhhhhhc----ccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHHH
Confidence 888887 49999999999999999974 68999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+|+++|+++++|++.+++++.++++|+++..++....|+... ..+.+|+++++++++||++++|++||||+++|||.|+
T Consensus 153 ~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~~~l~ 232 (241)
T d1wuea1 153 FCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232 (241)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHH
T ss_pred HHHHcCCEEEecccccccccccchhhhccccccccccccccccchhhhhccCCCCeEECCEEECCCCCCCceEECHHHHH
Confidence 999999999999999999999999999987766555666543 2356788888999999999999999999999998763
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.5e-46 Score=351.39 Aligned_cols=229 Identities=18% Similarity=0.236 Sum_probs=202.3
Q ss_pred CCeeeeceeecCC--C---HHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHH
Q 015161 176 SNTITTDITIPIV--S---PAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEA 248 (412)
Q Consensus 176 ~~~i~~~~~i~~~--~---~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A 248 (412)
+++||+|.+++.. + .+++.++++++.++||++||+|+| .++++|+++|+++|++ |+++.|++|+|++|++++|
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A 82 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAA 82 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHH
Confidence 5789999987643 2 356678888889999999999998 6899999999999997 8999999999999999999
Q ss_pred HHHHHHHHcC-CCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HH
Q 015161 249 VEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 326 (412)
Q Consensus 249 ~~~~~~l~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it 326 (412)
+++++.|+++ ++ .|+|||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++
T Consensus 83 ~~~~~~l~~~~~i--~~~EeP~~~~d~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 83 FKWERYFSEWTNI--GWLEEPLPFDQPQDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HTTHHHHTTCSCE--EEEECCSCSSCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHhhcCce--eEeccccccchHHHHHHHhh----cccceeecCccccchhhHHHHHHhhcceeeeccccccccHH
Confidence 9999999996 55 59999999999999999974 78999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCC----CC--CceeeeCcEEeeCCCC
Q 015161 327 GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDP----VL--DGYEVSGAVYKFTNAR 400 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~----~~--~~~~~~~G~~~~p~~p 400 (412)
++++++++|+++|+++++|+. +++++.++++|++++++|+.+.+...+..+..+. +. .+++++||++++|++|
T Consensus 157 ~~~~i~~~a~~~~i~v~~h~~-~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 235 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRASAHAY-DGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGK 235 (256)
T ss_dssp HHHHHHHHHHHHTCEECCCCS-SCSHHHHHHHHHHHTSCCSSSCTTSCSCCEEEECSSCGGGGGBCCCCBTTEEECCCSS
T ss_pred HHHHHHHHHhhhccccccccc-ccccchHHHHHHHHhCccchhhccccccceeeccccccccccCCceeeCCEEECCCCC
Confidence 999999999999999999975 7899999999999999998887765432222222 22 2367899999999999
Q ss_pred CcccccCCCCC
Q 015161 401 GHGGFLHWDNI 411 (412)
Q Consensus 401 GlG~~ld~~~~ 411 (412)
|||+++|+|.|
T Consensus 236 GLGieid~~~l 246 (256)
T d2gdqa1 236 GIGTEINMEIV 246 (256)
T ss_dssp BTSSCBCHHHH
T ss_pred CCCeEeCHHHH
Confidence 99999999875
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=5.8e-45 Score=337.77 Aligned_cols=219 Identities=20% Similarity=0.259 Sum_probs=201.9
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
|+.|.+.+..+++.+.+++++++++||++||+|+| .++++|+++|+++|+. ++++.|++|+|++|++++|++++++|+
T Consensus 2 ~~ay~~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~ 81 (227)
T d2mnra1 2 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 81 (227)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhh
Confidence 66788888888899999999999999999999999 5789999999999997 899999999999999999999999999
Q ss_pred cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHH
Q 015161 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 257 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A 335 (412)
++++ .|||||++++|++++++|++ ++++||++||++++..++.++++.+++|++|+|++++| ++++++++++|
T Consensus 82 ~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a 155 (227)
T d2mnra1 82 QEGV--TWIEEPTLQHDYEGHQRIQS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALA 155 (227)
T ss_dssp HHTC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred hchh--hhhcCcccccchhhhHHHHH----HcCCccccCceeEeechhhhhHhcCceeeeecccccccchhhHHHHHHHH
Confidence 9997 49999999999999999975 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 336 RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 336 ~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+++|+++++|++. .+++|+++++++..++|.. .+.++++.++++++||++.+|++||||+++|+++|+
T Consensus 156 ~~~g~~~~~h~~~------~~~~hl~aa~~~~~~~e~~---~~~~~~~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ 223 (227)
T d2mnra1 156 QQFGIPMSSHLFQ------EISAHLLAATPTAHWLERL---DLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIG 223 (227)
T ss_dssp HHHTCCBCCBSCH------HHHHHHHHTCTTBCCEEEC---CSSGGGBCCCSEEETTEEECCSSSBTCCCBCHHHHH
T ss_pred HHcCCcccccchh------hhhhhhhhcCCccceeecc---cCchhhcCCCceeECCEEECCCCCCCCEEECHHHHh
Confidence 9999999999763 4688999999999988863 245677888899999999999999999999998763
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=5.4e-44 Score=336.83 Aligned_cols=224 Identities=19% Similarity=0.320 Sum_probs=194.6
Q ss_pred CCeeeeceeec--------CCCHHHHHHHHHHHHHcCCCEEeEecC-------CChhHHHHHHHHHHHh-CCCcEEEEeC
Q 015161 176 SNTITTDITIP--------IVSPAEAAELASKYRKQGFTTLKLKVG-------KNLKEDIEVLRAIRAV-HPDSSFILDA 239 (412)
Q Consensus 176 ~~~i~~~~~i~--------~~~~~~~~~~~~~~~~~Gf~~~KiKvG-------~~~~~D~~~v~avr~~-~~~~~l~vDa 239 (412)
+++||+|.|.. +.+|+++++.+++++++||++||+|+| .++++|+++|+++|++ |+++.|++|+
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 56899998763 347999999999999999999999998 3679999999999997 8999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH-HHHHHHHcCCCCEEEe
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD-DVKKIVKGNLADVINI 318 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~-~~~~~i~~~a~d~v~i 318 (412)
|++|++++|++++++|+++++. |||||++++|++++++|++ .+++||++||++++.. ++.++++.+++|++|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~l~~----~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~ 155 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGFD--WIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 155 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCS--EEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred ccccccchhhhhhhhcccchhh--hhcCCcccccHHHHHHHHH----hcccceeehhhcccchhhhhhhhhhchhhhccc
Confidence 9999999999999999999984 9999999999999999985 6899999999999975 5688999999999999
Q ss_pred cCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc--CCcccc---cC--CCCCceeee
Q 015161 319 KLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD--TPLLLS---ED--PVLDGYEVS 390 (412)
Q Consensus 319 k~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~--~p~~~~---~d--~~~~~~~~~ 390 (412)
|++++| ++++++++++|+++|+++++|++. ++++|++++++++.+++.. .+.... .+ .....+.++
T Consensus 156 d~~~~GGit~~~~i~~~a~~~gi~v~~h~~~------~~~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 229 (255)
T d1rvka1 156 GVNDVGGITPALKTMHLAEAFGMECEVHGNT------AMNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDR 229 (255)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCCEEECCCS------HHHHHHHHHCSSCCCEEEEEECTTSCGGGCCTTBSSCSSCBCT
T ss_pred cccccccchHHHHHHHHHHHhccceeccccc------hhHHHHHHHhhhhhhcccccccccccccchhhhhhccCCCeee
Confidence 999998 999999999999999999999975 4678999999988776532 222111 11 122345679
Q ss_pred CcEEeeCCCCCcccccCCCCC
Q 015161 391 GAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 391 ~G~~~~p~~pGlG~~ld~~~~ 411 (412)
||++.+|++||||+++|+|.|
T Consensus 230 ~G~i~vp~~PGLGieid~~~l 250 (255)
T d1rvka1 230 DGFVHVPDRPGLGEDIDFTFI 250 (255)
T ss_dssp TSEEECCSCSBTCCCBCHHHH
T ss_pred CCEEECCCCCCCCeeECHHHH
Confidence 999999999999999999876
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=2.4e-44 Score=338.69 Aligned_cols=228 Identities=23% Similarity=0.266 Sum_probs=194.5
Q ss_pred eeeceeec---CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHH
Q 015161 179 ITTDITIP---IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 179 i~~~~~i~---~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+|+|.+.+ ..+|+++.+++++++++||++||+|+|.+++.|+++|+++|+. ++++.|++|+|++|+.++|+++++.
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 81 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQ 81 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHT
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHh
Confidence 57777643 2478999999999999999999999999999999999999997 8999999999999999999999999
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
|+++++. |||||++++|+++++++++ +.+++||++||++++..+++++++.+++|++|+|++++| +++++++++
T Consensus 82 l~~~~~~--~iEeP~~~~d~~~~~~~~~---~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~ 156 (252)
T d1yeya1 82 LAEFDIA--WIEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILL 156 (252)
T ss_dssp TGGGCCS--CEECCSCTTCHHHHHHHHH---HSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHH
T ss_pred hhhcCce--eecCCcchhhHHHHHHHhh---ccCCCceeccccccchhhhhhHhhccccceeccccccccCchhhhHHHH
Confidence 9999984 9999999999999998764 246899999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 334 VVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+|+++|+++++|+..++.++.++++|.+++.++... .+...+. ....+.+.++++++||++++|++||||+++|+|.|
T Consensus 157 ~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v~vp~~pGLGield~d~l 236 (252)
T d1yeya1 157 LAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 236 (252)
T ss_dssp HHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCSSGGGBSSCCCBSSSEECCCCSSBCSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccccccccccchhhhHHhcCCCCeEECCEEECCCCCCCCeeECHHHH
Confidence 999999999999987666666666666655443222 2211111 12345667788999999999999999999999876
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-43 Score=341.39 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=191.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 188 VSPAEAAELASKYRKQ-GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~-Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
.+|+++++++++++++ ||+++|+|+| .++++|+++|+++|++.|++.||||+|++||+++|+++++.|+ +++ .||
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l--~w~ 122 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSL--AYA 122 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTC--SCE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcc--hhh
Confidence 3788999999998887 9999999999 5789999999999999889999999999999999999999996 576 599
Q ss_pred ecCCCCCCH----HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 266 EQPVHRDDW----EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 266 EeP~~~~d~----~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
|||++++|. +.+++|+ +++++||++||++++..++.++++.+++|++|+|+ ++| ++++++++++|+++|+
T Consensus 123 EEPv~~~d~~~~~~~l~~lr----~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi 197 (309)
T d1jdfa1 123 EDPCGAEQGFSGREVMAEFR----RATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGL 197 (309)
T ss_dssp ESCBCCBTTBCHHHHHHHHH----HHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTC
T ss_pred hhhcccCcchhhHHHHHHhh----cccccceecCcccchhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCC
Confidence 999998874 4455555 47899999999999999999999999999999997 676 9999999999999999
Q ss_pred cEEEccCcchHHHHHHHHHHHccCCCCceec-ccCC-cccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 341 NLMIGGMVETRLAMGFAGHLSAGLGCFKFID-LDTP-LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 341 ~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e-~~~p-~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++++|++.+++|++++++|+++++||..+.+ ...+ ....++++.++++++||++.+||+||||+++|+|+|
T Consensus 198 ~v~~H~~~~~~i~~aa~~hlaaa~p~~~~~~~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGvelD~d~L 270 (309)
T d1jdfa1 198 TWGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQV 270 (309)
T ss_dssp CCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCCBCHHHH
T ss_pred CccccCCCCcHHHHHHHHHHHHhCCCCccccccccccchhhHhhcCCCceEECCEEECCCCCCCCeEECHHHH
Confidence 9999998899999999999999999865532 2222 224567778889999999999999999999999976
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=1.4e-42 Score=325.69 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=192.9
Q ss_pred CCeeeeceeecC----CCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHH
Q 015161 176 SNTITTDITIPI----VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAV 249 (412)
Q Consensus 176 ~~~i~~~~~i~~----~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~ 249 (412)
+++|++|.+.+. .+++++.+++++++++||++||+|+| .++++|+++|+++|+. ++++.||+|+|++|++++|+
T Consensus 3 ~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 3 NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 578999998765 37888999999999999999999999 5899999999999997 89999999999999999999
Q ss_pred HHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC----CCEEEecCCCCc-
Q 015161 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL----ADVINIKLAKVG- 324 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a----~d~v~ik~~~~G- 324 (412)
++++.|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.++ +|++|+|++++|
T Consensus 83 ~~~~~l~~~~i--~wiEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GG 156 (247)
T d1tzza1 83 AYAKMLRDYPL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 156 (247)
T ss_dssp HHHHHHTTSCC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTC
T ss_pred HHHhhcchhhh--hhhccccccccchhhhhhhh----ccccccccchhhhhhHHHHHHHHccCCcCcceeEeeccccccc
Confidence 99999999997 49999999999999999874 68999999999999999999999776 599999999997
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCccc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGG 404 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~ 404 (412)
+|++++++++|+++|+++.+|+..+ ++..+++++.++++.+.. ++.. +....+.+.++++++||++.+|++||||+
T Consensus 157 it~~~~i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~i~~G~i~~p~~pGlGi 232 (247)
T d1tzza1 157 LCEYQRTLEVLKTHGWSPSRCIPHG-GHQMSLNIAAGLGLGGNE--SYPD-LFQPYGGFPDGVRVENGHITMPDLPGIGF 232 (247)
T ss_dssp HHHHHHHHHHHHHTTCCGGGBCCSC-CBHHHHHHHHHHTCSCEE--ECTT-CSTTTBSCSTTCCCBTTEEECCCCSBTSG
T ss_pred hhHHHHHHHHHHHcCCCeeccCCCc-HHHHHHHHHHHhcCCCce--eecc-hhhhhhcCCCCcEEECCEEECCCCCCcce
Confidence 9999999999999999988776543 334444455544444322 2211 11223567778899999999999999999
Q ss_pred ccCCCCCC
Q 015161 405 FLHWDNIA 412 (412)
Q Consensus 405 ~ld~~~~~ 412 (412)
++|||.++
T Consensus 233 e~d~d~l~ 240 (247)
T d1tzza1 233 EGKSDLYK 240 (247)
T ss_dssp GGCHHHHH
T ss_pred eECHHHHH
Confidence 99998763
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-40 Score=304.48 Aligned_cols=205 Identities=31% Similarity=0.438 Sum_probs=188.5
Q ss_pred CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
.+++++++++++.+|+++.+++++++++||++||+|+|. +.|+++++++|++.|++.|++|+|++|++++|+++++.|
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--~~d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l 80 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLL 80 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHH
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CcHHHHHHHHHHhccccEEEEecccccchhHHHHHHHHH
Confidence 357899999999999999999999999999999999997 569999999999988999999999999999999999999
Q ss_pred HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHH
Q 015161 256 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEV 334 (412)
Q Consensus 256 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~ 334 (412)
+++++. |||||++++|++++++++ ..+||+.||++.+..+++++ .+++|++|+|++++| ++++++++++
T Consensus 81 ~~~~l~--~iEeP~~~~d~~~~~~l~------~~~pi~~~E~~~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~ 150 (208)
T d1jpdx1 81 ADLGVA--MLEQPLPAQDDAALENFI------HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATE 150 (208)
T ss_dssp HHTTCC--EEECCSCTTSCGGGGSSC------CSSCEEESTTCSSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHH
T ss_pred Hhcccc--ccCccCCccCHHHHHhhh------cccceecCCCcCCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHH
Confidence 999984 999999999999998873 46899999999999999887 478999999999997 9999999999
Q ss_pred HHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEee
Q 015161 335 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKF 396 (412)
Q Consensus 335 A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~ 396 (412)
|+++|+++++||++++++++++++|+++ ++++.|+++++.+.+|+ .++++++||++++
T Consensus 151 a~~~g~~~~~~~~~~~~i~~~a~~~~a~---~~~~~dld~~~~~~~di-~~~l~i~dG~i~l 208 (208)
T d1jpdx1 151 ARAQGFSLMLGCMLCTSRAISAALPLVP---QVSFADLDGPTWLAVDV-EPALQFTTGELHL 208 (208)
T ss_dssp HHHTTCEEEECCCSCCHHHHHHHGGGGG---GCSEECCCGGGGBSSCC-SSCCEEETTEEEC
T ss_pred HHHcCCeeeecCCchhHHHHHHHHHHhc---cCCCccccchhhhhhcC-CCCCeEeCCEEeC
Confidence 9999999999999999999999999875 56789999998777775 6779999999975
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-35 Score=269.54 Aligned_cols=187 Identities=22% Similarity=0.235 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCcee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV-TPVLF 265 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l-~~~~i 265 (412)
.+|+++.++++++ +||+++|+||| .++++|+++++++|++.|++.||+|+|++|++++|+++++.|+++.. .+.|+
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie~~ 90 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFL 90 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCCCCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCeeee
Confidence 4899988887764 79999999999 57899999999999998899999999999999999999999987531 22599
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~ 344 (412)
|||++ +.++++++++ ++++||++||++++..+ ..+..+++|++|+|++++| ++++++++++|+++|+++++
T Consensus 91 E~P~~--~~~~~~~l~~----~~~ipIa~dEs~~~~~~--~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 91 EEPCK--TRDDSRAFAR----ETGIAIAWDESLREPDF--AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp ECCBS--SHHHHHHHHH----HHCCCEEESGGGGSTTC--CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhh--hhhHHHHHhh----cccchhhhccccchhHH--HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 99996 4567888764 68899999999988654 3445678999999999998 99999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCC
Q 015161 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVL 384 (412)
Q Consensus 345 ~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~ 384 (412)
||++||+|++++++|+|+++++..++++++...+.+|++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~~~~~gldt~~~~~~d~~~ 202 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQVR 202 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCTTSCCBCTTGGGBSCEESS
T ss_pred cCCcchHHHHHHHHHHHHhCCCCCCCCCCchhHHhhcccc
Confidence 9999999999999999999988888888887766666543
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.97 E-value=6.9e-32 Score=251.82 Aligned_cols=194 Identities=18% Similarity=0.216 Sum_probs=157.4
Q ss_pred CCCCCeeeeceeecCCCHHHHHHHHHHHH----HcCCCEEeEecCCChhHHHH-------HHHHHHHh-CCCcEEEEe--
Q 015161 173 GGVSNTITTDITIPIVSPAEAAELASKYR----KQGFTTLKLKVGKNLKEDIE-------VLRAIRAV-HPDSSFILD-- 238 (412)
Q Consensus 173 Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~----~~Gf~~~KiKvG~~~~~D~~-------~v~avr~~-~~~~~l~vD-- 238 (412)
|+..++||+|.+.+...+......+.+.. +.||+.+|+|+|++.+.|.+ +++++|.. ++++.|++|
T Consensus 1 G~~~~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~ 80 (253)
T d1kcza1 1 GAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVY 80 (253)
T ss_dssp TCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECT
T ss_pred CCCcCCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehhh
Confidence 45567888888777665544333333322 46899999999987766665 66667765 789999999
Q ss_pred ----CCCCCCHHHHHHHHHHHHcCCC-CCceeecCCCCCCH----HHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHH
Q 015161 239 ----ANEGYKPQEAVEVLEKLYEMGV-TPVLFEQPVHRDDW----EGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 239 ----aN~~~~~~~A~~~~~~l~~~~l-~~~~iEeP~~~~d~----~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i 308 (412)
+|++|+++||++++.+|++... .+.|||||++.+|+ +++++|++.+. +.+++||++||+++++.++++++
T Consensus 81 ~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i 160 (253)
T d1kcza1 81 GTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFT 160 (253)
T ss_dssp THHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHH
T ss_pred hccCccCCCCHHHHHHHHHHHHHhcCCCCceEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHH
Confidence 5779999999999999986532 13499999999984 66777765322 23679999999999999999999
Q ss_pred HcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEc-cCcchHHHHHHHHHHHccCCC
Q 015161 309 KGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 309 ~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~-~~~es~i~~~a~~hlaaa~~~ 366 (412)
+.+++|++|+|++++| ++++++++++|+++|+++++| ++.||.++.++++|+|.|.+.
T Consensus 161 ~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~ 220 (253)
T d1kcza1 161 DNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGA 220 (253)
T ss_dssp HTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTC
T ss_pred HhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCc
Confidence 9999999999999998 999999999999999999987 588999999999999998653
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.96 E-value=6.4e-30 Score=237.78 Aligned_cols=190 Identities=15% Similarity=0.199 Sum_probs=155.4
Q ss_pred CeeeeceeecCCCHHHHHHHH----HHHHHcCCCEEeEecCCC-------hhHHHHHHHHHHHh-CCCcEEEEeCCC---
Q 015161 177 NTITTDITIPIVSPAEAAELA----SKYRKQGFTTLKLKVGKN-------LKEDIEVLRAIRAV-HPDSSFILDANE--- 241 (412)
Q Consensus 177 ~~i~~~~~i~~~~~~~~~~~~----~~~~~~Gf~~~KiKvG~~-------~~~D~~~v~avr~~-~~~~~l~vDaN~--- 241 (412)
.+||+|.+.+....+.....+ ..+.+.+|+.+|.|+|.+ +++++++|+++|.. |+++.|++|+|+
T Consensus 5 ~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~ 84 (251)
T d1kkoa1 5 EAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIG 84 (251)
T ss_dssp CCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHH
T ss_pred CCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeeccccccc
Confidence 467787766666554322222 222345799999999953 45667788888876 889999999766
Q ss_pred ---CCCHHHHHHHHHHHHcCCC-CCceeecCCCC----CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 ---GYKPQEAVEVLEKLYEMGV-TPVLFEQPVHR----DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ---~~~~~~A~~~~~~l~~~~l-~~~~iEeP~~~----~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+|++++|++++++|++... .+.|||||++. +|++++++|++.+. +.+++||++||++++.++++++++.++
T Consensus 85 ~~~~~~~~~ai~~l~~L~~~~~~~~l~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a 164 (251)
T d1kkoa1 85 LIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGS 164 (251)
T ss_dssp HHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCceeecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHHHHHHHHhCC
Confidence 8999999999999987532 13499999974 57889999987542 236799999999999999999999999
Q ss_pred CCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEc-cCcchHHHHHHHHHHHccCCC
Q 015161 313 ADVINIKLAKVG-VLGALEIIEVVRASGLNLMIG-GMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 313 ~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~-~~~es~i~~~a~~hlaaa~~~ 366 (412)
+|++|+|++++| ++++++++++|+++|+++++| ++.||+++.++++|+|+|.+.
T Consensus 165 ~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~~ 220 (251)
T d1kkoa1 165 CHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARP 220 (251)
T ss_dssp CSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCC
T ss_pred ccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcCC
Confidence 999999999998 999999999999999999988 588999999999999987653
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.96 E-value=1.4e-28 Score=205.92 Aligned_cols=124 Identities=31% Similarity=0.518 Sum_probs=115.2
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~ 124 (412)
|||++|+++++++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+.+++|+...+...+++ +.|.++|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g~~~~ 80 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999888999998887777765 78999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+++.+++.+...++++. .|++|||||+||++||..|+|||+||||
T Consensus 81 ~~~~~~~~l~~~~~~~~-----~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 81 GYEAILHDIQHLLTGNM-----SAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp GHHHHHHHHHHSSSSCH-----HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cHHHHHHHhhhhccCcc-----HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99999999988777654 4799999999999999999999999998
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.94 E-value=6.5e-27 Score=196.00 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=111.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++.+++||++||++|.++..+++.++|+|+| ||++||||+.+.+ .+++|+.+.+...+++ +.|.++|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~ 79 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhhhhcC
Confidence 89999999999999999999999999999999999998 6999999998743 4677888877766765 789999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+.+++.+++.+...++++. .|++||||||||+.||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-----~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 80 ASNLSQARVLMDRAVTGNL-----SAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred cccHHHHHHHhhhhhhccc-----hHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 9999999999988777764 4799999999999999999999999998
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.94 E-value=3.5e-27 Score=197.64 Aligned_cols=123 Identities=26% Similarity=0.405 Sum_probs=110.9
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++++++||++||+++.++.+.++.++|+|+| ||++||||+.+. +.+++|+.+.+...+++ +.|.++|++
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~lig~~ 79 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999998 599999999874 34778888777766665 689999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+.+++.+++.+...++++. .|++||||||||++||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-----~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 80 AFNVSGALQTMARAVTGNA-----SAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTCHHHHHHHHHTTCSSCH-----HHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccHHHHHHHhhhccccch-----HHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999999987777664 3799999999999999999999999998
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.93 E-value=3.3e-26 Score=191.68 Aligned_cols=123 Identities=26% Similarity=0.360 Sum_probs=109.8
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEecc--CCccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPV--LPHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~--~~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++++++||+.||++|.++.++++.++|+|+|++|++||||+.+ .+.+++|+...++..+++ +.|.++|++
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l~g~~ 80 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 80 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchhcCCC
Confidence 89999999999999999999999999999999999999999999999864 566889998888877765 789999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+.+.+.+++.+.. +.++. +|++||||||||+.||..|+|||+|||.
T Consensus 81 ~~~~~~i~~~~~~-~~~~~-----~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 81 IRKPEEIQELFSW-IQGNE-----MAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp ESSTTHHHHHHTT-SCSCH-----HHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred chhHHHHHHHhhh-ccCch-----HHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999988877644 55554 3799999999999999999999999984
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.5e-25 Score=184.61 Aligned_cols=115 Identities=26% Similarity=0.287 Sum_probs=99.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++++|+++||.++.++.+.++.++|+|+|++|++||||+.+.. ...... ..+.+.|.++|+++.+
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~~----~~~~~~--i~~~l~~~l~g~~~~~ 74 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWL----PALHVG--FTKRIIPFLLGKQAGS 74 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSCH----HHHHHH--HHHTHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCch----hhhHHH--HHHHHhhhhcccChhh
Confidence 8999999999999999999999999999999999999999999999997632 111111 1245789999999999
Q ss_pred HHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 126 LGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
.+.+++.+... + ..|++||||||||+.||..|+|||+||||
T Consensus 75 ~~~~~~~~~~~---~-----~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 75 RLSLVRTIQKW---H-----QRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHH---C-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHh---h-----hHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999988653 2 24899999999999999999999999998
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1.4e-24 Score=181.00 Aligned_cols=123 Identities=24% Similarity=0.361 Sum_probs=96.8
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHHH-HhHHHcCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKESPA 123 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~~~ 123 (412)
.|++|+++++++|+++||+++.++.++++.++|||+|++|++||||+.+.+ .+..+........+.. +.|.+.+.++
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLAA 81 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHTTSBT
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhcccccccch
Confidence 599999999999999999999999999999999999999999999998743 3455565555544443 6789999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
.++..++..+.....++. .|++||||||||++||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~-----~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 82 DNINAAMLKLDKLAKGNT-----FAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TCHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred hhHHHHHHHhhhhcccch-----HHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 999999988877665543 4799999999999999999999999998
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=3e-24 Score=179.98 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=100.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|+|++|+++++++|++.||+++.++.+.++.++|+|+|++|++||||+.+....+.+... ..++.+.+.+.+.+ .+
T Consensus 2 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~~ 77 (130)
T d2mnra2 2 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLK---QLLDDMAAMIVNEP-LA 77 (130)
T ss_dssp CBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSSGGGHHHHH---HHHHHHHHHHTTSB-SC
T ss_pred CEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecCcccchhHH---HHHHHHHHHhccCC-CC
Confidence 799999999999999999999999999999999999999999999999876544433322 23355677777754 45
Q ss_pred HHHHHHHHHhhcCC-CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC
Q 015161 126 LGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 177 (412)
Q Consensus 126 ~~~~~~~l~~~~~g-~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~ 177 (412)
....++.+...... ........|++|||+||||++||..|+|||+||||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~r 130 (130)
T d2mnra2 78 PVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANAR 130 (130)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCC
Confidence 55667666554321 11112346899999999999999999999999999753
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.91 E-value=3.2e-24 Score=178.84 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=105.2
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++++++|++.||.+|.++.+.++.++|+|+|++|++||||+.+. +.+++|+.......+.. +.|.+.+++
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTEA 80 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTSC
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccccccc
Confidence 899999999999999999999999999999999999999999999999874 34667777766665544 678899999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG 173 (412)
..+.+.+++.+.. ..++. .|++||||||||++||..|+|||+|||
T Consensus 81 ~~~~~~~~~~~~~-~~~~~-----~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 81 IEQPQEVSTIFEE-VKGHW-----MGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp CCSTHHHHHHGGG-SCSCH-----HHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred cccHHHHHHHHhh-ccCcc-----HHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 9998888876644 34443 478999999999999999999999998
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.91 E-value=3.9e-24 Score=178.92 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=98.1
Q ss_pred eEEeEEEEEEEEeccccceeccCc----eeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATS----RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKES 121 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~----~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~ 121 (412)
|||++|+++.+++|+++|+..+.. ..+..+.++|+|+|++|++||||+.+.. ++.+ .+. +.+.|.++|+
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~-~~~~----~i~--~~l~~~lig~ 73 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEI-VRPH----VIE--KFVKKVLIGE 73 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGG-GCHH----HHH--HTHHHHHTTS
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHH-HHHH----HHH--HHHHHHHhhc
Confidence 899999999999999999988853 4667889999999999999999987532 2222 111 3478999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
++.+.+.+|+.+..............|++|||+||||+.||.+|+|||+||||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 74 DHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp BTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred CcchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 99999999998876432111111246899999999999999999999999998
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.90 E-value=7.9e-24 Score=176.05 Aligned_cols=122 Identities=24% Similarity=0.370 Sum_probs=106.2
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
|||++|+++++++|++.||.++.++.++++.++|+++|++| +||||+.+. +.+++|+.......++. +.+.+++.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhhcCCC
Confidence 89999999999999999999999999999999999999888 799999864 45788888777665554 688899999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+.+.+.+++.+.. ..++. .|++||||||||+.||..|+|||+|||.
T Consensus 80 ~~~~~~~~~~~~~-~~~~~-----~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 80 DITAAKVTPLLAK-FKGHR-----MAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp SCCHHHHHHHHTT-SCSCH-----HHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred ccCHHHHHHHHHH-ccCCc-----HHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999999887754 44443 4799999999999999999999999983
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=6.9e-24 Score=176.36 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=95.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++.+++|++.++..+ ++.++|+|+|++|++||||+.+.+..+. .......+.+.|.++|+++.+
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~------~~~iiV~i~td~Gi~G~Ge~~~~~~~~~---~~~~~~~~~~~~~lig~~~~~ 71 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAGA---KAGVGIIRDLAPLIVGEDPLN 71 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTTH---HHHHHHHHHHGGGTTTSCTTC
T ss_pred CEEeEEEEEEEcCCCCCCcccc------ceeEEEEEEECCCCEEEEeeccccccch---HHHHHHHHHHHhhhcccccch
Confidence 8999999999999998875544 3568999999999999999976543222 222334467899999999999
Q ss_pred HHHHHHHHHhhcCC--CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 126 LGSVFGVVAGLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 126 ~~~~~~~l~~~~~g--~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
++.+|+.+++.... ........|+||||+|+||++||..|+|||+||||
T Consensus 72 ~e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 72 IEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp HHHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hhHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999998764211 11111235899999999999999999999999997
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.90 E-value=1e-23 Score=176.10 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=95.4
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHHH-HhHHHcCC
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKASE-ACEVLKES 121 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~~-~~~~l~g~ 121 (412)
+|||++|+++.+++||+.||.+|.++.+.++.++|++++ +|++||||+.+.+ .+++|........+.. +.|.+.|+
T Consensus 2 m~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (127)
T d1r0ma2 2 MFKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQ 80 (127)
T ss_dssp CEECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTC
T ss_pred CceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccccccC
Confidence 689999999999999999999999999999999999996 5999999998754 3677777766665544 68999999
Q ss_pred CCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 122 PAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 122 ~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
++.+++.++..+.. +.++. .|++||||||||+.||..|+|||++|||
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~-----~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 81 TFANPEAVSDALGS-YRGNR-----MARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp EESSHHHHHHTTTT-SCSCH-----HHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred ChhhHHHHhhhhcc-cCCch-----HHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 99999988876644 33342 4799999999999999999999999998
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=5.9e-22 Score=166.82 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=98.7
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
-||++|+++++..|++.++..+......+..++|||+|++|++||||+.+.. .. ...++.+.|.++|+++.+
T Consensus 3 p~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~~-----~~---~~~~~~~~~~~ig~~~~~ 74 (132)
T d1bqga2 3 PVITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGE-----GI---RKTLEDARHLLINQSIGN 74 (132)
T ss_dssp CBEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HH---HHHHHTTHHHHBTCBGGG
T ss_pred CEEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCcH-----hH---HHHHHHhhhhhcCcChHH
Confidence 3899999999999999999999887778889999999999999999997532 11 123456789999999999
Q ss_pred HHHHHHHHHhhcCCCc----------chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 015161 126 LGSVFGVVAGLLPGHQ----------FASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~----------~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG 173 (412)
++.+++.|.+.+.... ......|+|||||||||++||.+|+|||+|||
T Consensus 75 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 75 YQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp HHHHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred HHHHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 9999999876542211 01124689999999999999999999999998
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=4e-22 Score=169.53 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECC-----CcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN-----GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE 120 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~-----G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g 120 (412)
|||++|+ .+++|+++|++++.+++++++.++|+|+||+ |.+||||+.+.+....+. ..+.+.|.++|
T Consensus 1 mkIvdi~--~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~~~------~~~~~~~~lig 72 (140)
T d1tzza2 1 VRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGL------IRERFASRILE 72 (140)
T ss_dssp CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCHHH------HHHTHHHHHHT
T ss_pred CeEEEEE--EEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCchhHHHHH------HHHHHHHHHhc
Confidence 7886665 6888999999999999999999999999984 567899987654332221 12347788888
Q ss_pred CCCC----------CHHHHHHHHHhhc-CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC
Q 015161 121 SPAM----------ALGSVFGVVAGLL-PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175 (412)
Q Consensus 121 ~~~~----------~~~~~~~~l~~~~-~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~ 175 (412)
+++. +.+.+++.+++.. .++. .....|+|||||||||++||.+|+|||+||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 73 ADPKKLLNEAGDNLDPDKVWAAMMINEKPGGH-GERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp SCGGGSBCTTSSSBCHHHHHHHHTTTCCSCCC-SHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred ccHhhHhhhcccccChHHHHHHHHhhcccCCC-chhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 7763 4577788876542 2222 123468999999999999999999999999985
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.1e-21 Score=163.53 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=96.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
.+|++|+++++..|.+.++..+.........++|||+|++|++||||+.+.+ ... ..++.+.|.++|+++.+
T Consensus 4 p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~~-----~~~---~~~~~~~~~l~g~~~~~ 75 (133)
T d1jdfa2 4 PVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGE-----KIR---KTLEDAIPLVVGKTLGE 75 (133)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-----HHH---HHHHHHHHHHTTCBGGG
T ss_pred CeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCcH-----HHH---HHHHhhhhhhcCCChhh
Confidence 5999999999999999999888766666778999999999999999987532 111 23456889999999999
Q ss_pred HHHHHHHHHhhcCCC----------cchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 015161 126 LGSVFGVVAGLLPGH----------QFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~----------~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG 173 (412)
++.+++.+....... .......|+|||||||||++||.+|+|||+|||
T Consensus 76 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 76 YKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HHHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 999998887542110 001134699999999999999999999999998
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.80 E-value=5.3e-20 Score=156.07 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=92.9
Q ss_pred EEeEEEEEEEEeccccceecc--CceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIA--TSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a--~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
.|++|+.+.+++|+.++...+ ....+....++|+|+|++|..|+||+...+...+. .......+.+.|.++|+++.
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~~~~~~--~~~~~~~~~l~p~liG~~~~ 79 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGN--DVQTAAVAALAEHVVGLSVD 79 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEECSTTH--HHHHHHHHTTHHHHTTCBHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEecCCChH--HHHHHHHHHHHHHhhCCCcc
Confidence 599999999999999987544 33344566899999999988888887653322221 22222335689999999999
Q ss_pred CHHHHHHHHHhhcC--------CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC
Q 015161 125 ALGSVFGVVAGLLP--------GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175 (412)
Q Consensus 125 ~~~~~~~~l~~~~~--------g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~ 175 (412)
+++.+|+.+++.+. +........|+||||+||||++||.+|+|||+|||+-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~~ 138 (139)
T d1yeya2 80 KVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAEL 138 (139)
T ss_dssp HHHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTS
T ss_pred cHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhhc
Confidence 99998888865421 1222223469999999999999999999999999974
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.31 E-value=7e-12 Score=117.07 Aligned_cols=135 Identities=21% Similarity=0.363 Sum_probs=109.0
Q ss_pred HHHHHhC--CCcEEEEeCCC----------------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHH
Q 015161 224 RAIRAVH--PDSSFILDANE----------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLG 278 (412)
Q Consensus 224 ~avr~~~--~~~~l~vDaN~----------------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~ 278 (412)
+++.+++ +++.|.+|+.. ..+.+|-+.++.. +++|++ .+||+|++.+||+++.
T Consensus 89 ~Ai~~aGy~~~i~i~lD~AAsefy~~~kY~~~~~~~~~~~~~~~s~~elid~y~~li~~YPI--isIEDp~~e~D~~gw~ 166 (295)
T d2al1a1 89 DAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWS 166 (295)
T ss_dssp HHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHH
T ss_pred HHHHhcCCCcceEEEeehhhHHHhhCCcccccccccccCCccccchHHHHHHHHHHHHhCCE--EEecCCcCccchHHHH
Confidence 4555554 46777778642 2457788887665 578986 5999999999999999
Q ss_pred HhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHH
Q 015161 279 HVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMG 355 (412)
Q Consensus 279 ~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~ 355 (412)
+|++ ..++-|.+|. .++++..+++.++.++++.+.+|++++| +|++++++.+|+++|+.+++++.. ||. -.
T Consensus 167 ~lt~----~~g~~iVGDDl~~Tn~~rl~~~i~~~~~nailiK~NQiGTvtEt~ea~~la~~~g~~~ivShRSGETe--D~ 240 (295)
T d2al1a1 167 HFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETE--DT 240 (295)
T ss_dssp HHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CC
T ss_pred HHhh----ccCceeecchhhcccchhhhcchhhhcccceeecccchhhHHHHHHHHHHHHhcCCeeecccCCCCcC--cc
Confidence 9985 4567788876 5778999999999999999999999999 999999999999999999998864 443 24
Q ss_pred HHHHHHccCCC
Q 015161 356 FAGHLSAGLGC 366 (412)
Q Consensus 356 a~~hlaaa~~~ 366 (412)
+.+|||.|++.
T Consensus 241 ~iaDLAVg~~a 251 (295)
T d2al1a1 241 FIADLVVGLRT 251 (295)
T ss_dssp HHHHHHHHTTC
T ss_pred hhhhhhHhcCC
Confidence 56788888764
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.30 E-value=5.5e-12 Score=117.85 Aligned_cols=135 Identities=19% Similarity=0.359 Sum_probs=109.9
Q ss_pred HHHHHhC--CCcEEEEeCCC---------------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHH
Q 015161 224 RAIRAVH--PDSSFILDANE---------------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 224 ~avr~~~--~~~~l~vDaN~---------------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+++.+++ +++.|.+|+.. ..+.+|-+.++.. +++|++ .+||+|+..+||+++++
T Consensus 89 ~Ai~~ag~~~~i~ialD~AASefy~~~kY~~~~~~~~~~~~~~t~delid~y~~l~~kYPI--isIEDP~~E~D~~gw~~ 166 (294)
T d2akza1 89 EAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSK 166 (294)
T ss_dssp HHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHH
T ss_pred HHHhccCCCceEEEEechhhhhhhhcCcceeeecccCCccceecHHHHHHHHHHHhcccCe--EEEeCCCcccchhhHHH
Confidence 4444454 57888888752 2467888887765 578986 69999999999999999
Q ss_pred hHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGF 356 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a 356 (412)
|++ +.++.|.+|. .++++..+++.++.++++.+.+|++++| +|++++.+.+|+++|+.+++++.. ||. -..
T Consensus 167 lt~----~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~NQiGTltEt~ea~~la~~~g~~~ivShRsGETe--D~~ 240 (294)
T d2akza1 167 FTA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETE--DTF 240 (294)
T ss_dssp HHH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCH
T ss_pred HHH----hcCcEEEccccccccHHHHHHHHhcCcCccceeccccchhHHHHHHHHHHHHHcCCcEEeeCCCCCcC--cch
Confidence 986 4577888866 6788999999999999999999999999 999999999999999999998864 443 235
Q ss_pred HHHHHccCCC
Q 015161 357 AGHLSAGLGC 366 (412)
Q Consensus 357 ~~hlaaa~~~ 366 (412)
.+|||.|++.
T Consensus 241 iaDLAVg~~a 250 (294)
T d2akza1 241 IADLVVGLCT 250 (294)
T ss_dssp HHHHHHHHTC
T ss_pred HhHHHHhcCC
Confidence 6788877653
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.23 E-value=3.2e-11 Score=112.54 Aligned_cols=117 Identities=18% Similarity=0.345 Sum_probs=98.6
Q ss_pred CHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+|.++++.. +++|++ .+||+|+..+||+++.+|++.+. ..+-|.+|. .++++..+++.++.++++.+.+|++
T Consensus 133 s~~elid~y~~l~~~YPI--isIEDP~~e~D~~gw~~lt~~lg--~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTERLG--KKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHHT--TTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCe--EEEecCcccccHHHHHHHHHHhC--CceEEEcCcccccChhHHHhhhhhcccccceeccc
Confidence 67788887766 478986 69999999999999999987542 357787776 6778999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCC
Q 015161 322 KVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 322 ~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
++| +|++++++.+|+++|..+++++.. ||. -.+.+|||.|++.
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGETe--D~~iadLAVg~~a 253 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGETE--DSTIADIAVATNA 253 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCCc--cchhHHHHHHcCC
Confidence 999 999999999999999999998864 443 2456788888764
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=6.2e-11 Score=110.28 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecC
Q 015161 243 YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 243 ~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.+.+|-+.++.. +++|++ .+||+|+..+||+++.+|++.+. ..+-|.+|. .++++..+++.++.++++.+.+|+
T Consensus 128 ~t~~eli~~y~~l~~~yPI--isIEDP~~edD~~gw~~lt~~~g--~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK~ 203 (292)
T d2fyma1 128 FTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTKVLG--DKIQLVGDDLFVTNTKILKEGIEKGIANSILIKF 203 (292)
T ss_dssp ECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHHT--TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECG
T ss_pred ccHHHHHHHHHHHHhcCce--EEEeCCcccccHHHHHHHHHhcC--CcEEEeCCchhccChHHHHhhhhcCCccceeech
Confidence 588998888866 578886 69999999999999999997542 257777776 577899999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
+++| +|++++.+++|+++|..+++++.. ||. -.+.+|||.|++.
T Consensus 204 NQiGTvTet~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~ga 249 (292)
T d2fyma1 204 NQIGSLTETLAAIKMAKDAGYTAVISHRSGETE--DATIADLAVGTAA 249 (292)
T ss_dssp GGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHHcCCeEeecCCCCCcc--cchHHHHHHHhCC
Confidence 9999 999999999999999999998864 443 2456788888764
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.19 E-value=4e-11 Score=111.89 Aligned_cols=119 Identities=18% Similarity=0.328 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEec
Q 015161 242 GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 242 ~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik 319 (412)
..|.+|-+.++.. +++|++ .+||+|+..+||+++++|++.+. -.+-|.+|. .++++..+++.++.++++.+.+|
T Consensus 130 ~ls~~elid~y~~l~~~YPI--isIEDp~~e~D~~gw~~lt~~~g--~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLIK 205 (291)
T d2ptza1 130 WVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGITEALK--GKTQIVGDDLTVTNTERIKMAIEKKACNSLLLK 205 (291)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHTT--TTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred hhhHHHHHHHHHHHhhccce--eEecCCccccchhHHHHhhhccC--ceEEEecCcccccchHHHhhccccCCccceEec
Confidence 3578998887766 478986 69999999999999999997542 247777776 57789999999999999999999
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCC
Q 015161 320 LAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 320 ~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
++++| +|++++.+.+|+++|..+++++.. ||. -.+.+|||.|++.
T Consensus 206 ~NQiGTvtEt~ea~~la~~~g~~~iiShRSGETe--D~~iaDLAVg~~a 252 (291)
T d2ptza1 206 INQIGTISEAIASSKLCMENGWSVMVSHRSGETE--DTYIADLVVALGS 252 (291)
T ss_dssp HHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCS--CCHHHHHHHHHTC
T ss_pred chhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCcC--cchHHHHHHHhCC
Confidence 99999 999999999999999999998864 543 2356788877653
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.90 E-value=1.1e-08 Score=84.12 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=86.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVK 110 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~ 110 (412)
+|++|..+.+- .|+| ++++.|+|++++|..|.+-++...+ |.+-.+..++..
T Consensus 3 ~I~~v~~r~Il--------DSRG----~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~ 70 (137)
T d1w6ta2 3 IITDVYAREVL--------DSRG----NPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDN 70 (137)
T ss_dssp BEEEEEEEEEE--------CTTS----CEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred ceeEEEEEEEE--------cCCC----CEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHH
Confidence 69999888873 5555 4899999999999999988875321 112235566666
Q ss_pred HHH-HhHHHcCCCCCCHHHHHHHHHhhcC----CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 111 ASE-ACEVLKESPAMALGSVFGVVAGLLP----GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
++. +.|.|+|+++.+.+.+.+.|.+.-. .+..+ ++.-|+.+|++.+.|+..|+|||++|||
T Consensus 71 in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGa---NailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 71 VNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGA---NAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCH---HHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccch---hHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 654 7899999999999988887765421 12222 6889999999999999999999999998
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1e-07 Score=78.76 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=87.0
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVK 110 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~ 110 (412)
||++|..+.+- .|.| ++++.|+|.+++|..|.+-++...+ |.+..+..++..
T Consensus 2 kI~~v~~r~Il--------DSRG----~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~ 69 (139)
T d2fyma2 2 KIVKIIGREII--------DSRG----NPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69 (139)
T ss_dssp BEEEEEEEEEE--------CTTS----CEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eeEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHH
Confidence 78888888763 5555 4899999999999999998875321 222345666666
Q ss_pred HH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 111 AS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 111 ~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
++ .+.|.|+|+++.+.+.+.+.|...-...... ...++.-|+.+|++.+.|+..++|||++|++
T Consensus 70 in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d2fyma2 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAE 135 (139)
T ss_dssp HHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHh
Confidence 65 4789999999999998888776542111110 0126889999999999999999999999975
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.68 E-value=7.6e-08 Score=79.49 Aligned_cols=116 Identities=13% Similarity=0.135 Sum_probs=83.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHH
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (412)
|+|++|..+.+- .|+| ++++.|+|.|++|.. .+-++... .|.+..+..++.
T Consensus 2 M~I~~i~~r~Il--------DSRG----~PTvevev~~~~g~~-ra~~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~Av~ 68 (139)
T d2ptza2 2 MTIQKVHGREVL--------DSRG----NPTVEVEVTTEKGVF-RSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVK 68 (139)
T ss_dssp TSCCEEEEEEEE--------CTTS----CEEEEEEEEETTEEE-EEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHH
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCce-eEeccccccccchhhhhcCCCcccccccchHHHHHH
Confidence 789999988763 5555 489999999999854 34443221 022234556666
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
.+. .+.|.|+|+++.+.+.+.+.|-......... ...++.-|+.+|++.+.|+..++|||++|++
T Consensus 69 nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 69 NVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 664 4889999999999999988876643211110 0126899999999999999999999999974
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.3e-06 Score=72.12 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=80.0
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHHH
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVKA 111 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~~ 111 (412)
|++|..+.+- .|+| ++++.|+|.|++| .|.+-++...+ |.+..+..++..+
T Consensus 2 I~~v~ar~Il--------DSRG----~PTvev~v~~~~g-~~ra~~PSGaStG~~EA~elrD~~~~~~~gkgV~~av~ni 68 (141)
T d2al1a2 2 VSKVYARSVY--------DSRG----NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNV 68 (141)
T ss_dssp CCEEEEEEEE--------CTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred cCEEEEEEEE--------CCCC----CcEEEEEEEECCC-eEEEeeccCCCCCcceeeeecCCCccccccccchhHHHHH
Confidence 5667766652 4555 4899999999998 58776654211 1223455666666
Q ss_pred HH-HhHHHc--CCCCCCHHHHHHHHHhhcCC---CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 112 SE-ACEVLK--ESPAMALGSVFGVVAGLLPG---HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~~g---~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+. +.|.|+ |.++.+.+.+.+.|...-.. ..+. .++.-|+.||++.+.++..|+|||++|++
T Consensus 69 n~~i~~~Li~~g~~~~dq~~iD~~li~lDgT~nks~lG--aNailAvS~A~akAaA~~~~~pLy~yl~~ 135 (141)
T d2al1a2 69 NDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLG--ANAILGVSLAASRAAAAEKNVPLYKHLAD 135 (141)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSTTSTTTC--HHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhHHHHhhcCCchhhHHHHHHHHHHccCCcchhhhh--hHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 54 789887 78888988888777654211 1122 26889999999999999999999999975
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=98.27 E-value=5.5e-06 Score=67.80 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=77.1
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHHH
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKA 111 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~ 111 (412)
|++|..+.+ -.|+| ++++.|+|.|++| +|.+-++... .|.+-.+..++..+
T Consensus 2 I~~i~ar~I--------lDSRG----~PTVev~v~~~~~-~~ra~~PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~ni 68 (139)
T d1pdza2 2 ITKVFARTI--------FDSRG----NPTVEVDLYTSKG-LFRAAVPSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNV 68 (139)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHH
T ss_pred ccEEEEEEE--------EcCCC----CcEEEEEEEECCC-eEEEecccCcCCcchhheecccCCccccccccccceeecc
Confidence 566666655 25555 4889999999876 4666654321 12222355566666
Q ss_pred H-HHhHHHc--CCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 112 S-EACEVLK--ESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 112 ~-~~~~~l~--g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
+ .+.|.|+ |.++.+...+.+.|...-...... ..-++.-|++||++.+.++..|+|||++|++
T Consensus 69 n~~i~~~Li~~g~~~~dq~~iD~~Li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 69 NDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHTHHHHHHHHTCCTTCHHHHHHHHHHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhhhhHHHHhcCccccchhhhHHHHHhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 4 4788887 688889888877766542111110 0126889999999999999999999999975
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=98.25 E-value=5.9e-06 Score=67.89 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=78.4
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHHH
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVKA 111 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~~ 111 (412)
|++|..+.+ -.|+| .+++.|+|.+++| +|.+-++...+ |.+..+..++..+
T Consensus 2 I~~i~~r~I--------lDSRG----~PTvevev~~~~g-~~~a~~PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i 68 (139)
T d2akza2 2 IEKIWAREI--------LDSRG----NPTVEVDLYTAKG-LFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHI 68 (139)
T ss_dssp CCEEEEEEE--------ECTTS----CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHH
T ss_pred cCEEEEEEE--------EcCCC----CeEEEEEEEECCC-eEEEecccccccchhhhhhccccccccccCCchhhHHHhh
Confidence 556666555 24555 4889999999887 46655543211 1222456667666
Q ss_pred HH-HhHHHc--CCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC
Q 015161 112 SE-ACEVLK--ESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174 (412)
Q Consensus 112 ~~-~~~~l~--g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg 174 (412)
.. +.|.|+ |.++.+.+.+.+.|...-...... ...++..|+.+|++.+.|+..++|||++|++
T Consensus 69 ~~~i~~~Li~~g~~~~dQ~~iD~~L~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 69 NSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHTHHHHHHHHCCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 54 889887 899999988888876542211110 0126889999999999999999999999864
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=97.62 E-value=0.00027 Score=57.53 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=75.0
Q ss_pred ceeccCceee-eeeEEEEEEEECCCcEEEEEeccCC--ccCcc----cHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHH
Q 015161 63 PFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLP--HVTAE----DQQTAMVKAS-EACEVLKESPAMALGSVFGVVA 134 (412)
Q Consensus 63 pf~~a~~~~~-~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e----~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~ 134 (412)
|.+.+..++. .-+.+.|.+..+||.+.||.|...- +..+. .....+..++ .+.|.|+|++..........+.
T Consensus 38 p~TpGF~~VRq~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d 117 (160)
T d1kcza2 38 TVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFD 117 (160)
T ss_dssp CCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHH
T ss_pred CCCCCchhhhccCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHh
Confidence 4444444433 3578999999999999999998631 11111 1122333444 5899999999999988888877
Q ss_pred hhc-CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 135 GLL-PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 135 ~~~-~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
... .|..+ +.+.+.+|..||+|+.+++.+.-..+.+
T Consensus 118 ~~~~~g~~L--HtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 118 KMTVNGNRL--HTAIRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp HCEETTEEC--CHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hcccCCcch--hHHHHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 532 23332 4578999999999999999887666654
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=97.57 E-value=0.00036 Score=56.74 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=74.2
Q ss_pred ceeccCceee-eeeEEEEEEEECCCcEEEEEeccCC--ccCcc----cHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHH
Q 015161 63 PFTIATSRLD-QVENVAIRIELSNGCVGWGEAPVLP--HVTAE----DQQTAMVKAS-EACEVLKESPAMALGSVFGVVA 134 (412)
Q Consensus 63 pf~~a~~~~~-~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e----~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~ 134 (412)
|.+.+..++. .-+.+.|.+..+||.+.||.|...- +..+. .....+..++ .+.|.|+|++..........+.
T Consensus 38 p~TpGF~~VRq~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d 117 (160)
T d1kkoa2 38 PVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFD 117 (160)
T ss_dssp CCSTTCSSSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHH
T ss_pred CCCCCchhhhccCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHh
Confidence 4444544433 3578999999999999999998631 11111 1122333444 5899999999999888777776
Q ss_pred hh-cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 135 GL-LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 135 ~~-~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
.. +.|..+ +.+.+.+|..||+|+.+++.+.-..+.+
T Consensus 118 ~~~~~g~~L--HtAiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 118 KLRIDGNLL--HTAVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp HCEETTEEC--CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hcccCCCch--hHHHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 53 233332 4578999999999999999887666554
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.011 Score=54.77 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEe----CC
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILD----AN 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~~l--~vD----aN 240 (412)
..+.|+.+.+.||..+-|+.+. ++ +--++.|++||++ ++++.+ ++- ..
T Consensus 143 f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~ 222 (330)
T d1ps9a1 143 FARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVE 222 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCST
T ss_pred HHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccccc
Confidence 4666778889999999999751 12 2335678899997 767533 332 24
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceee--------------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFE--------------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iE--------------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
.+++.++++++++.|++.++. ++. .|.+...+ ..+.+.+++.+++||...=.+++++...+
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d--~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~ik~~~~~pvi~~G~i~~~~~ae~ 297 (330)
T d1ps9a1 223 DGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAF---SWVTRKLKGHVSLPLVTTNRINDPQVADD 297 (330)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTT---HHHHHHHTTSCSSCEEECSSCCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhh--hhhcccccccccccccCCCCcchhH---HHHHHHHHhhCCceEEEeCCCCCHHHHHH
Confidence 678999999999999987653 333 22222222 23334455678999998888999999999
Q ss_pred HHHcCCCCEEEe
Q 015161 307 IVKGNLADVINI 318 (412)
Q Consensus 307 ~i~~~a~d~v~i 318 (412)
+++.+.+|.|.+
T Consensus 298 ~l~~g~~D~V~~ 309 (330)
T d1ps9a1 298 ILSRGDADMVSM 309 (330)
T ss_dssp HHHTTSCSEEEE
T ss_pred HHHCCCcchhHh
Confidence 999999998754
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.032 Score=51.69 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC----CC
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN----EG 242 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l~vDaN----~~ 242 (412)
..+.|+.+.+.||..+.|+.+. +++ --.+.+++||++ ...+.+++-++ ++
T Consensus 145 f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g 224 (337)
T d1z41a1 145 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKG 224 (337)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTS
T ss_pred HHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCc
Confidence 4556777888999999999751 222 235678899997 45566666544 46
Q ss_pred CCHHHHHHHHHHHHcCCCCCceee-------cC---CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFE-------QP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iE-------eP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
++.++.+.+++.|++.++. +++ +| ..+.-. ..+.+..|+.+++||..-=.+++++...++++.+.
T Consensus 225 ~~~~~~~~~~~~l~~~g~d--~~~~s~g~~~~~~~~~~~~~~---~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~ 299 (337)
T d1z41a1 225 LDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQ---VSFAEKIREQADMATGAVGMITDGSMAEEILQNGR 299 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTT---HHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTS
T ss_pred cchhhhHHHHHHHHHcCCc--ccccccccccccccccCCccc---HHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCC
Confidence 7899999999999988764 332 12 111111 22233334577899998878899999999999999
Q ss_pred CCEEEe
Q 015161 313 ADVINI 318 (412)
Q Consensus 313 ~d~v~i 318 (412)
+|+|.+
T Consensus 300 ~D~V~~ 305 (337)
T d1z41a1 300 ADLIFI 305 (337)
T ss_dssp CSEEEE
T ss_pred cceehh
Confidence 998743
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.038 Score=50.43 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=98.4
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCC
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEG 242 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~ 242 (412)
-|+...+...+|+++.+.+ ++.++||..|-+.+|. +++.-.+.|+++++.. ++.+.+=..-+
T Consensus 55 ~p~~~Ql~g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~RlG 132 (305)
T d1vhna_ 55 RNVAVQIFGSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLG 132 (305)
T ss_dssp TTEEEEEECSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESC
T ss_pred CCeEEEEeccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-ccccccccccC
Confidence 3566677778999887755 5678899999999882 4555566778887764 34455444456
Q ss_pred CCHHHHHHHHHHHHcCCCCCcee-----ecC-CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLF-----EQP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~i-----EeP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
|+.++..++++.+++.|+....| +|. ..+-||+..+++. ..+||.+.-.+.+.+|+.++++.-.+|.+
T Consensus 133 ~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~------~~ipvi~NGdI~s~~d~~~~l~~tg~dgV 206 (305)
T d1vhna_ 133 WEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLE------KRIPTFVSGDIFTPEDAKRALEESGCDGL 206 (305)
T ss_dssp SSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSC------CSSCEEEESSCCSHHHHHHHHHHHCCSEE
T ss_pred cccchhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhh------hhhhhhcccccccHHHHHHHHHhcCCCeE
Confidence 77666778999999988752121 333 2245777777663 36999998899999999999986569999
Q ss_pred EecCCCCc
Q 015161 317 NIKLAKVG 324 (412)
Q Consensus 317 ~ik~~~~G 324 (412)
++=-.-.|
T Consensus 207 MiGRgal~ 214 (305)
T d1vhna_ 207 LVARGAIG 214 (305)
T ss_dssp EESGGGTT
T ss_pred ehhHHHHH
Confidence 88655444
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=94.69 E-value=0.2 Score=46.57 Aligned_cols=118 Identities=14% Similarity=0.273 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA------ 239 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDa------ 239 (412)
.++.|+++++.||..+-|+.+. ++ +--.|.+++||++ +++ +.+++-.
T Consensus 162 f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~ 241 (363)
T d1vyra_ 162 FRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN 241 (363)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccc
Confidence 4666778889999999999751 12 2345778999997 555 3344432
Q ss_pred --CCCCCHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 240 --NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 240 --N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
.++++.++++++++.|++.++. |++=-.. +.. ..+++ ..+..+.+||...= ..+++...++++.|
T Consensus 242 ~~~gg~~~~e~~~~~~~l~~~gvd--~i~vs~~~~~~~~~~~-~~~~~---~~~~~~~~~vi~~G-~~t~~~ae~~l~~G 314 (363)
T d1vyra_ 242 VDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYS-EAFRQ---KVRERFHGVIIGAG-AYTAEKAEDLIGKG 314 (363)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCC-HHHHH---HHHHHCCSEEEEES-SCCHHHHHHHHHTT
T ss_pred hhhcccchHHHHHHHHHHHhcCCe--eeecccCCccCCcccc-HHHHH---HHHHhcCceEEecC-CCCHHHHHHHHHCC
Confidence 1466789999999999999874 6653211 112 22333 23346778887764 45899999999999
Q ss_pred CCCEEE
Q 015161 312 LADVIN 317 (412)
Q Consensus 312 a~d~v~ 317 (412)
.+|.|.
T Consensus 315 ~~DlV~ 320 (363)
T d1vyra_ 315 LIDAVA 320 (363)
T ss_dssp SCSEEE
T ss_pred Ccceeh
Confidence 999973
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=94.62 E-value=0.13 Score=44.09 Aligned_cols=96 Identities=10% Similarity=0.150 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++.++++.|.+.|+. .||=.+...+. +..+++++ +..++-|.+| ++.+.++++++++.| ++++. -|..
T Consensus 24 ~~~~~~~~~~al~~~Gi~--~iEitl~~~~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aG-a~Fiv-SP~~ 95 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLS--VAEITFRSEAAADAIRLLRA---NRPDFLIAAG-TVLTAEQVVLAKSSG-ADFVV-TPGL 95 (212)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH---HCTTCEEEEE-SCCSHHHHHHHHHHT-CSEEE-CSSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHh---cCCCceEeee-ecccHHHHHHHHhhC-CcEEE-CCCC
Confidence 578999999999999986 99999986543 44454543 2346777777 788999999999998 46653 2222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. .++++.|++++++++||++.-|.+
T Consensus 96 ---~--~~v~~~a~~~~i~~iPGv~TpsEi 120 (212)
T d1vhca_ 96 ---N--PKIVKLCQDLNFPITPGVNNPMAI 120 (212)
T ss_dssp ---C--HHHHHHHHHTTCCEECEECSHHHH
T ss_pred ---C--HHHHHHHHhcCCCccCCcCCHHHH
Confidence 1 577899999999999999876655
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.16 Score=43.64 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.++++++++.|-+.|+. .||=++...+ ++.+++++++ ..++-|.+| ++.+.++++++++.|+-=++.|-.
T Consensus 25 ~~~~a~~~~~al~~~Gi~--~iEitl~tp~a~~~I~~l~~~---~p~~~vGaG-TV~~~~~~~~a~~aGa~FivSP~~-- 96 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVR--VLNVTLRTECAVDAIRAIAKE---VPEAIVGAG-TVLNPQQLAEVTEAGAQFAISPGL-- 96 (213)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEESCSTTHHHHHHHHHHH---CTTSEEEEE-SCCSHHHHHHHHHHTCSCEEESSC--
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHH---CCCCeeecc-ccccHHHHHHHHHCCCcEEECCCC--
Confidence 689999999999999986 9999998654 3555555542 345666666 889999999999999533333322
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
-.++++.|++++++++||++.-|.+
T Consensus 97 -----~~~v~~~a~~~~i~~iPGv~TpsEi 121 (213)
T d1wbha1 97 -----TEPLLKAATEGTIPLIPGISTVSEL 121 (213)
T ss_dssp -----CHHHHHHHHHSSSCEEEEESSHHHH
T ss_pred -----CHHHHHHHHhcCCCccCCcCCHHHH
Confidence 1567899999999999999876655
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.91 E-value=0.55 Score=42.89 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCc--EEEEeC---CC
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILDA---NE 241 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~--~l~vDa---N~ 241 (412)
.++.|+.+++.||..+-|+.+. +++ --++.+++||++ ++++ .+++=+ .+
T Consensus 151 f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~ 230 (340)
T d1djqa1 151 YVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYG 230 (340)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSC
T ss_pred HHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccccc
Confidence 3556778888999999999751 222 234678899997 7764 333322 22
Q ss_pred --CCCHHHHHHHHHHHHcCCCCC---------ceeecCCCCCCH--HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHH
Q 015161 242 --GYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 242 --~~~~~~A~~~~~~l~~~~l~~---------~~iEeP~~~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 308 (412)
..+.+.....+..+.+.++.. .|.+++-+.... ..+..+.+..|..+++||..-=.++++++..+++
T Consensus 231 ~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l 310 (340)
T d1djqa1 231 PGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIV 310 (340)
T ss_dssp TTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHH
T ss_pred CCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH
Confidence 223333334444555544320 122333222110 0011222333457889998777899999999999
Q ss_pred HcCCCCEEE
Q 015161 309 KGNLADVIN 317 (412)
Q Consensus 309 ~~~a~d~v~ 317 (412)
+.+.+|.+-
T Consensus 311 ~~G~aDlV~ 319 (340)
T d1djqa1 311 TKGYADIIG 319 (340)
T ss_dssp HTTSCSBEE
T ss_pred HCCCccchh
Confidence 999999874
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=93.23 E-value=0.22 Score=42.75 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.++++++++.|.+.|+. .||=++...+ ++.++.+++ +.-++-|.+| ++.+.++++++++.|+ +++. -|..
T Consensus 27 ~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aGa-~Fiv-sP~~ 98 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLRE---QRPELCVGAG-TVLDRSMFAAVEAAGA-QFVV-TPGI 98 (216)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHH---HCTTSEEEEE-CCCSHHHHHHHHHHTC-SSEE-CSSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---hCCCcceeee-eeecHHHHHHHHhCCC-CEEE-CCCC
Confidence 479999999999999986 9999997543 344444443 2345777777 7899999999999996 5442 2222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
..++++.|+++|++++||++.-|.+
T Consensus 99 -----~~~v~~~a~~~~i~~iPGv~TpsEi 123 (216)
T d1mxsa_ 99 -----TEDILEAGVDSEIPLLPGISTPSEI 123 (216)
T ss_dssp -----CHHHHHHHHHCSSCEECEECSHHHH
T ss_pred -----cHHHHHHHHhcCCCccCCcCCHHHH
Confidence 2567899999999999999876655
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=92.06 E-value=0.45 Score=40.26 Aligned_cols=99 Identities=24% Similarity=0.280 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++.+.++.|-+.|+. ++|=++...+. +.+++|++. ...++-|.+| ++.+.++++++++.|+ +++. -|
T Consensus 19 ~~~~a~~~~~al~~~Gi~--~iEitlr~p~a~~~i~~l~~~--~~~~~~vGaG-TV~~~~~~~~a~~aGa-~fiv-sP-- 89 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFL--KEKGAIIGAG-TVTSVEQCRKAVESGA-EFIV-SP-- 89 (202)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHH--HHTTCEEEEE-SCCSHHHHHHHHHHTC-SEEE-CS--
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHh--cCCCcEEEec-ccccHHHHHHHHhhcc-cEEe-CC--
Confidence 589999999999999986 99998886553 445555532 1235666655 7889999999999984 6552 22
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
|+. .++.+.|.++|+++.+|.+.-|.+..
T Consensus 90 -~~~--~~v~~~~~~~~i~~iPGv~TpsEi~~ 118 (202)
T d1wa3a1 90 -HLD--EEISQFCKEKGVFYMPGVMTPTELVK 118 (202)
T ss_dssp -SCC--HHHHHHHHHHTCEEECEECSHHHHHH
T ss_pred -CCc--HHHHHHHHhcCCceeCCcCcHHHHHH
Confidence 322 57789999999999999986555433
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.21 E-value=2 Score=39.53 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc-EEEEeCC---CC
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS-SFILDAN---EG 242 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~-~l~vDaN---~~ 242 (412)
.++.|+++++.||..+.|+.+. ++ +--+|.+++||++ +++. .+++-.. .+
T Consensus 165 f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g 244 (374)
T d1gwja_ 165 YRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFG 244 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTT
T ss_pred HHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccC
Confidence 4667788889999999999761 12 2235678999997 6553 3333221 11
Q ss_pred C----CHHHHHHHHHHHHcCCCCCceeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015161 243 Y----KPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 314 (412)
Q Consensus 243 ~----~~~~A~~~~~~l~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d 314 (412)
. ....++.....++..++....+.+|-.. .-.+++++ .+++..++||..--.+ ++....++++.+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 245 LTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFRE---QMRQRFKGGLIYCGNY-DAGRAQARLDDNTAD 320 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHH---HHHHHCCSEEEEESSC-CHHHHHHHHHTTSCS
T ss_pred CcccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHHH---HHHHHcCCCEEEECCc-CHHHHHHHHHcCCCc
Confidence 1 1334566677788777643345555321 11122332 2234678999776665 788899999999999
Q ss_pred EEE
Q 015161 315 VIN 317 (412)
Q Consensus 315 ~v~ 317 (412)
.|-
T Consensus 321 lV~ 323 (374)
T d1gwja_ 321 AVA 323 (374)
T ss_dssp EEE
T ss_pred Eeh
Confidence 973
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=86.34 E-value=3.3 Score=34.96 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=98.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+.. +.|.. |
T Consensus 23 l~~~~~~~a~~~~~al~~~Gi~~iEitl~~--p~a~~~i~~l~~~~p~--~~vGaGTV~~~~~~~~a~----~aGa~--F 92 (216)
T d1mxsa_ 23 ITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPE--LCVGAGTVLDRSMFAAVE----AAGAQ--F 92 (216)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTT--SEEEEECCCSHHHHHHHH----HHTCS--S
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCCC--cceeeeeeecHHHHHHHH----hCCCC--E
Confidence 345578888999999999999999998853 3557888999999887 456677888888865443 45653 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+. -+.++ +.++|..-| +.|+.++..+++.| ++++.+=|.- .| ..-...+...- -++++
T Consensus 93 ivsP~~~~~v---~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~~g~~~ikal~~p~--p~~~f 160 (216)
T d1mxsa_ 93 VVTPGITEDI---LEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISGGVAAIKAFGGPF--GDIRF 160 (216)
T ss_dssp EECSSCCHHH---HHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHTHHHHHHHHHTTT--TTCEE
T ss_pred EECCCCcHHH---HHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccccccccHHHHHHHhccc--ccCce
Confidence 7777754333 23332 457888776 67899999999987 7888777754 44 32222222222 36888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 161 iptGGV 166 (216)
T d1mxsa_ 161 CPTGGV 166 (216)
T ss_dssp EEBSSC
T ss_pred eccCCC
Confidence 886544
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=84.98 E-value=8.9 Score=32.03 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=99.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-.-. ..-.+.++.+++.+|++ .+=+..-.|.+++.+. .+.|.. |
T Consensus 21 lr~~~~~~a~~~~~al~~~Gi~~iEitl~t--p~a~~~I~~l~~~~p~~--~vGaGTV~~~~~~~~a----~~aGa~--F 90 (213)
T d1wbha1 21 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEA--IVGAGTVLNPQQLAEV----TEAGAQ--F 90 (213)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTS--EEEEESCCSHHHHHHH----HHHTCS--C
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCC--eeeccccccHHHHHHH----HHCCCc--E
Confidence 345688888999999999999999999843 34577888899988885 4667788889987444 345654 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+. + +.++ +.++|..-| +.|+.++..+++.| ++++.+=|.. .| ..-...+.... -++++
T Consensus 91 ivSP~~~~~v--~-~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~~ 158 (213)
T d1wbha1 91 AISPGLTEPL--L-KAAT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQAIAGPF--SQVRF 158 (213)
T ss_dssp EEESSCCHHH--H-HHHH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTC--TTCEE
T ss_pred EECCCCCHHH--H-HHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccchhcChHHHHHHhcCcc--cCCce
Confidence 7778754333 2 3222 457888776 67899999999988 7888887775 46 33333233222 37888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 159 ~ptGGV 164 (213)
T d1wbha1 159 CPTGGI 164 (213)
T ss_dssp EEBSSC
T ss_pred eeeCCC
Confidence 886644
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=84.07 E-value=9.9 Score=31.70 Aligned_cols=141 Identities=14% Similarity=0.245 Sum_probs=98.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
...++++..+.++.+.+.|++.+.+-... ..-.+.++++++.+|+ +.+=+..-.|.+++.+.. +.|.. |+
T Consensus 21 r~~~~~~~~~~~~al~~~Gi~~iEitl~~--~~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~~~a~----~aGa~--Fi 90 (212)
T d1vhca_ 21 ALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPD--FLIAAGTVLTAEQVVLAK----SSGAD--FV 90 (212)
T ss_dssp CCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT--CEEEEESCCSHHHHHHHH----HHTCS--EE
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHhcCCC--ceEeeeecccHHHHHHHH----hhCCc--EE
Confidence 34577888888888999999999999853 3456778888888887 556678888999875543 45654 77
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcEE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~~ 343 (412)
=-|.-..+ +-+.+. +.++|..-| +.|+.++..+.+.| ++++.+=|.. +| +.-...+...- -+++++
T Consensus 91 vSP~~~~~---v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vK~FPA~~~gG~~~lkal~~p~--p~~~~~ 158 (212)
T d1vhca_ 91 VTPGLNPK---IVKLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKALLGPY--AQLQIM 158 (212)
T ss_dssp ECSSCCHH---HHHHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTT--TTCEEE
T ss_pred ECCCCCHH---HHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEEccccccchHHHHHHHhccc--cCCeEE
Confidence 77865433 333332 457888776 67899999999988 7998887864 55 43323222221 268999
Q ss_pred EccCc
Q 015161 344 IGGMV 348 (412)
Q Consensus 344 ~~~~~ 348 (412)
+.+-+
T Consensus 159 ptGGV 163 (212)
T d1vhca_ 159 PTGGI 163 (212)
T ss_dssp EBSSC
T ss_pred ecCCC
Confidence 86544
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=82.15 E-value=6.9 Score=35.60 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN------ 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l~vDaN------ 240 (412)
.++.|+.+++.||..+-|+.+. +++ --++.|++||++ +++..+..-.+
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeecccccc
Confidence 4667788889999999999751 222 235678999996 76654433222
Q ss_pred --CCCCHHHHHHHHHHH------HcCCCCCceeecCCCCC----------CHHHHHHhHHHhhcccCCeEEeCCCCCCHH
Q 015161 241 --EGYKPQEAVEVLEKL------YEMGVTPVLFEQPVHRD----------DWEGLGHVSHIAKDKFGVSVAADESCRSLD 302 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l------~~~~l~~~~iEeP~~~~----------d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 302 (412)
..++.+..+.....+ ...++.-..+++|.... -......+.+..|...++||..-=.+ +++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~ 319 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKE 319 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CHH
T ss_pred cccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHH
Confidence 233334444433333 23333212445442110 01112223333344667888664444 688
Q ss_pred HHHHHHHcCCCCEEE
Q 015161 303 DVKKIVKGNLADVIN 317 (412)
Q Consensus 303 ~~~~~i~~~a~d~v~ 317 (412)
...++++.|.+|.|.
T Consensus 320 ~ae~~l~~G~~DlV~ 334 (380)
T d1q45a_ 320 LGMQAVQQGDADLVS 334 (380)
T ss_dssp HHHHHHHTTSCSEEE
T ss_pred HHHHHHHcCCccchh
Confidence 889999999999873
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