Citrus Sinensis ID: 015162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEEHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASATEDETANSSVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSAG
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHHcccccccHHHHHHHHHHcccccccccccEEEcccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEcccHHHccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdesqgqgssnspapfliktyemvddpltnSLVSWsqsggsfivwnppdfakdllplyfkhnnfSSFVRQLNtygfrkidpdqweFANEEFIRGQRHLLKnihrrkpvhshstqsptpiteTERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLlkkpgfssaLNQQAEVhskkrrllrpttieylDDVKSAslsvneqkenpdatfdpspalnleqIDRLESSVDFWTFFLCGigeafnqdvydfgvlrpvsavtddeieegvsseehdglsnvsspksmdvhsspkqaassenpvdgasatedetanssvknraNDQFWEQFLTetpaaaasssarpesrdpesgstyvnkpaeadskkfwwhsnnlDTLTRHFGNLTSAG
Flexible Loop (DISEMBL)
mdesqgqgssnspapFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIhrrkpvhshstqsptpitetERNEFEAKIERLKKENSLLQLELrrresgnhefeyhVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQaevhskkrrllrptTIEYLDDVKSAslsvneqkenpdatfdpspaLNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEegvsseehdglsnVSSPKSMDVHSSpkqaassenpvdgasatedetanssvKNRANDQFWEQFLTEtpaaaasssarpesrdpesgstyvnkpaeadskkfwWHSNNLDTLTRHFGNLTSAG
Low Complexity Region (SEG)
MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSllqlelrrreSGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEEHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASATEDETANSSVKNRANDQFWEQFLTETpaaaasssarpesrdpesGSTYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSAG
Disordered region (IsUnstruct)
***************FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNI****************************************************FEYHVQSVRERLRYLENRQTQMIACLANLLKKPG***********************IEY********************************IDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAV*********************************************************************************************************KFWWHSNNLDTLTRHF*******
Disordered Region (DISOPRED)
*****************IKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLL**********************************************RRRESGNHEFEYHVQSVRERLR***NRQTQMIACLANLL*******************************************************************************************************************************************************************QFWEQFLTET**********************************WWHSNNLDTLTRHFGNL****
Disordered Region (DISEMBL)
***********SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHR*********************EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSA***********RRLLRPTTIEYLDDVKSASLS**********TFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEI****************************************************KNRANDQFWEQFLTET************************KPAEADSKKFWWHSNNLDTLTRHFGNLTSAG
Disordered Region (DISPRO)
***********SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRR*******************NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEV************************************************************************************************************************************************RANDQFWEQFLTETPA********************************W**************N*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETExxxxxxxxxxxxxxxxxxxxxLRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEEHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASATEDETANSSVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q94J16	440	Heat stress transcription	yes	no	0.927	0.868	0.408	6e-76
O49403	401	Heat stress transcription	yes	no	0.924	0.950	0.385	2e-65
Q93VB5	459	Heat stress transcription	no	no	0.919	0.825	0.391	5e-62
Q9FK72	345	Heat stress transcription	no	no	0.815	0.973	0.371	8e-62
Q6K6S5	475	Heat stress transcription	no	no	0.468	0.406	0.559	4e-57
Q84T61	506	Heat stress transcription	no	no	0.592	0.482	0.458	7e-56
Q40152	527	Heat shock factor protein	N/A	no	0.461	0.360	0.490	4e-54
Q6VBB2	372	Heat stress transcription	no	no	0.740	0.819	0.414	4e-53
Q9LQM7	485	Heat stress transcription	no	no	0.485	0.412	0.486	3e-52
Q9SCW5	468	Heat stress transcription	no	no	0.466	0.410	0.5	2e-51

>sp|Q94J16|HFA4B_ORYSJ Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1

 Score =  285 bits (728), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 180/441 (40%), Positives = 244/441 (55%), Gaps = 59/441 (13%)

Query: 15  PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTY 74
           PFL KTYEMVDDP T+++V W+ +G SF+V N P+F +DLLP YFKHNNFSSFVRQLNTY
Sbjct: 12  PFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTY 71

Query: 75  GFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS--TQSPTPITETERNEFEAKIE 132
           GFRK+DP+QWEFANE+FI+GQRH LKNIHRRKP+ SHS  +Q   P+T+ ER ++E +IE
Sbjct: 72  GFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIE 131

Query: 133 RLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSA 192
           RLK +N+ L  EL+         E  +Q++ E+L  +E++Q  +I+ +  ++K PGF S+
Sbjct: 132 RLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSS 191

Query: 193 LNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENP-DATFDPSPALNLEQIDRLE 251
             QQ + H KKRRL  P  I + +D  +      E +  P D T  P+     E  D++E
Sbjct: 192 FVQQQDHHRKKRRL--PIPISFHEDANT-----QENQIMPCDLTNSPAQTFYRESFDKME 244

Query: 252 SSVDFWTFFLCGIGEAFNQDV-YDFGVLRPVSAVTDDEIEEGVSSEEHDGLSNVSSPKSM 310
           SS++    FL    E F  D+ YD GV  P S V   E+     S+       VSSP + 
Sbjct: 245 SSLNSLENFLREASEEFGNDISYDDGVPGPSSTVVLTELHSPGESD-----PRVSSPPTR 299

Query: 311 ---------DVHSSPKQAASS---ENP--------VDGASATEDETANS----------- 339
                    D HSS   A S+   E+P        VD  +   +   NS           
Sbjct: 300 MRTSSAGAGDSHSSRDVAESTSCAESPPIPQMHSRVDTRAKVSEIDVNSEPAVTETGPSR 359

Query: 340 --------SVKNRANDQFWEQFLTETPAAA-ASSSARPESRDPESGSTYVNKPAEADSKK 390
                   +V   AND FW+QFLTE P ++ A   A+ E RD   G   V++    D + 
Sbjct: 360 DQPAEEPPAVTPGANDGFWQQFLTEQPGSSDAHQEAQSERRD---GGNKVDEMKSGDRQH 416

Query: 391 FWWHSNNLDTLTRHFGNLTSA 411
            WW   N++ +T   G LTS 
Sbjct: 417 LWWGKRNVEQITEKLGLLTST 437

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1

 Score =  249 bits (637), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/428 (38%), Positives = 239/428 (55%), Gaps = 47/428 (10%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MDE+    SS+S  PFL KTYEMVDD  ++S+VSWSQS  SFIVWNPP+F++DLLP +FK
Sbjct: 1   MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFK 60

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS----TQSP 116
           HNNFSSF+RQLNTYGFRK DP+QWEFAN++F+RGQ HL+KNIHRRKPVHSHS        
Sbjct: 61  HNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQL 120

Query: 117 TPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176
            P+T++ER     +IERL KE   L  EL +++     FE  V+ ++ERL+++E RQ  M
Sbjct: 121 NPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTM 180

Query: 177 IACLANLLKKPGFSSALNQQA-EVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDAT 235
           ++ ++ +L+KPG +  L+    E + +KRR  R   IE+  D      +        + +
Sbjct: 181 VSFVSQVLEKPGLALNLSPCVPETNERKRRFPR---IEFFPDEPMLEENKTCVVVREEGS 237

Query: 236 FDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSS 295
             PS      Q+++LESS+  W   +    E+         +L+  S +T D ++E  + 
Sbjct: 238 TSPSSHTREHQVEQLESSIAIWENLVSDSCES---------MLQSRSMMTLD-VDESSTF 287

Query: 296 EEHDGLSNVS-----------SPKSMDVHSSPKQAASSENPVDGASATEDETANSSVKNR 344
            E   LS +            SP+ +D++  P          DG+       A       
Sbjct: 288 PESPPLSCIQLSVDSRLKSPPSPRIIDMNCEP----------DGSKEQNTVAAPPPPPVA 337

Query: 345 -ANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTR 403
            AND FW+QF +E P +      + E +D +         A   ++K WW+S N++ +T 
Sbjct: 338 GANDGFWQQFFSENPGSTEQREVQLERKDDKDK-------AGVRTEKCWWNSRNVNAITE 390

Query: 404 HFGNLTSA 411
             G+LTS+
Sbjct: 391 QLGHLTSS 398

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VB5|HFA4D_ORYSJ Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 176/450 (39%), Positives = 236/450 (52%), Gaps = 71/450 (15%)

Query: 16  FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYG 75
           FLIKTYEMV+D  TN +VSW   G SF+VWNP DF++DLLP YFKHNNFSSF+RQLNTYG
Sbjct: 21  FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYG 80

Query: 76  FRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT--PITETERNEFEAKIER 133
           FRKIDP++WEFANE+FIRG  HLLKNIHRRKPVHSHS Q+    P+ E+ER E E +I R
Sbjct: 81  FRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINR 140

Query: 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG--FSS 191
           LK E S+L  +L+R+    +   + +Q++  RL  +E RQ  ++A L  +L++ G   SS
Sbjct: 141 LKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQRRGGAVSS 200

Query: 192 ALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKE------NPDATFDPS--PALN 243
           +L  +++  SKKRR+  P    ++DD  +      EQK         DA   P   P  N
Sbjct: 201 SL-LESDHFSKKRRV--PKMDLFVDDCAAG----EEQKVFQFQGIGTDAPAMPPVLPVTN 253

Query: 244 LEQIDRLE-SSVDFWTFF-----LCGIGEAFNQDVYDFGVLRPVSAVTDDE-----IEEG 292
            E  DR+E S V     F      C   E      +  G   P +A+  +E     +E G
Sbjct: 254 GEAFDRVELSLVSLEKLFQRANDACTAAEEMYS--HGHGGTEPSTAICPEEMNTAPMETG 311

Query: 293 V--------------SSEEHDGLSN--------VSSPK------SMDVHSS--PKQAASS 322
           +              +   H  LS         V SP+        D+H +  P QA  +
Sbjct: 312 IDLQLPASLHPSSPNTGNAHLHLSTELTESPGFVQSPELPMAEIREDIHVTRYPTQADVN 371

Query: 323 ENPVDGASATEDETANSSVKNR-ANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVN 381
                    ++D T+ +   +   ND FWE+FLTETP +    S R ES  P+      +
Sbjct: 372 SEIASSTDTSQDGTSETEASHGPTNDVFWERFLTETPRSCLDESERQES--PKD-----D 424

Query: 382 KPAEADSKKFWWHSNNLDTLTRHFGNLTSA 411
             AE     F  H   +D +T   G+L SA
Sbjct: 425 VKAELGCNGF-HHREKVDQITEQMGHLASA 453

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FK72|HFA4C_ARATH Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1

 Score =  238 bits (606), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 151/407 (37%), Positives = 226/407 (55%), Gaps = 71/407 (17%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MDE+ G GSS+ P PFL KTYEMVDD  ++S+V+WS++  SFIV NP +F++DLLP +FK
Sbjct: 1   MDENNG-GSSSLP-PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFK 58

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS---TQSPT 117
           H NFSSF+RQLNTYGFRK+DP++WEF N++F+RG+ +L+KNIHRRKPVHSHS    Q+  
Sbjct: 59  HKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQN 118

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
           P+TE+ER   E +IERLK E   L  EL+ +E    EFE  V ++++RL+++E  Q  ++
Sbjct: 119 PLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIV 178

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFD 237
           A ++ +L KPG S  L    E H +++R  +  ++                         
Sbjct: 179 AYVSQVLGKPGLSLNL----ENHERRKRRFQENSL------------------------- 209

Query: 238 PSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEE 297
           P  + ++EQ+++LESS+ FW   +    E               S++  D  E  +S  +
Sbjct: 210 PPSSSHIEQVEKLESSLTFWENLVSESCEKSGLQ---------SSSMDHDAAESSLSIGD 260

Query: 298 HDGLSNVSSPKS--MDVHSSPKQAASSENPVDGASATEDETANSSVKNRANDQFWEQFLT 355
                  + PKS  +D++S P    ++  P  G                 ND FWEQ LT
Sbjct: 261 -------TRPKSSKIDMNSEPPVTVTAPAPKTG----------------VNDDFWEQCLT 297

Query: 356 ETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLT 402
           E P +      + E RD  + +   N     + + +WW+S N++ +T
Sbjct: 298 ENPGSTEQQEVQSERRDVGNDN---NGNKIGNQRTYWWNSGNVNNIT 341

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K6S5|HSFA5_ORYSJ Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 141/202 (69%), Gaps = 9/202 (4%)

Query: 13  PAPFLIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQL 71
           PAPFL+KTYEMVDDP T+++VSWS  S  SF+VWN P+FA  LLP YFKH+NFSSF+RQL
Sbjct: 19  PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQL 78

Query: 72  NTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKI 131
           NTYGFRKIDP++WEFANE FI+GQ+HLLKNIHRRKP+HSHS   P  + + ER  FE +I
Sbjct: 79  NTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHS-HPPGALPDNERAIFEDEI 137

Query: 132 ERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSS 191
           ERL +E S LQ +L + +         ++ +  R+  +E RQT+MIA L    K P F +
Sbjct: 138 ERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQFVN 197

Query: 192 ALNQQAEVHS-------KKRRL 206
            L + AE  S       KKRRL
Sbjct: 198 KLVKMAEASSIFTDAFNKKRRL 219

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  218 bits (555), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 121/264 (45%), Positives = 164/264 (62%), Gaps = 20/264 (7%)

Query: 8   GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
           G + +P PFL+KTYEMVDDP T+++VSW     SF+VWN P+FA+DLLP YFKH+NFSSF
Sbjct: 30  GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSF 89

Query: 68  VRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST-------QSPTP-I 119
           VRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK I+RRKP H ++         +P P  
Sbjct: 90  VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPAC 149

Query: 120 TETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC 179
            E  +   E +IE LK++ ++L  EL R        ++ +Q++ +RL+ +E RQ QM++ 
Sbjct: 150 VEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSF 209

Query: 180 LANLLKKPGFSSALNQQAE-------VHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENP 232
           LA  +  PGF +   QQ E         +KKRRL  P     LD  +SASL     K  P
Sbjct: 210 LAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRL--PKQDGSLDS-ESASLDGQIVKYQP 266

Query: 233 DATFDPSPALNLEQIDRLESSVDF 256
               + +    L +I +L+SS  F
Sbjct: 267 --MINEAAKAMLRKILKLDSSHRF 288

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  212 bits (540), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 140/218 (64%), Gaps = 28/218 (12%)

Query: 16  FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYG 75
           FL+KTY+MVDDP T+ +VSWS +  SF+VW+PP+FAKDLLP YFKHNNFSSFVRQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 76  FRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP----------------- 118
           FRK+DPD+WEFANE F+RGQ+HLLK+I RRKP H H+ Q   P                 
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 119 --ITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176
               E  +   E ++ERLK++ ++L  EL R        +  +Q + +RL+ +E RQ QM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 177 IACLANLLKKPGFSSALNQQ--------AEVHSKKRRL 206
           ++ LA  + +PGF +   QQ        AE  SKKRR+
Sbjct: 220 MSFLAKAVNRPGFLAQFVQQQNESNKRIAE-GSKKRRI 256

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 30/335 (8%)

Query: 12  SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQL 71
            P PFL KTY+MVDD  T++ VSWS +  SF+VW+P  FA  LLP +FKHNNFSSFVRQL
Sbjct: 49  GPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQL 108

Query: 72  NTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRK-PVHSHST-QSPTPITETERNEFEA 129
           NTYGFRK+DPD+WEFANE F+RGQRHLLKNI RRK P H+ S  QS  P  E     ++A
Sbjct: 109 NTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPYLEVGHFGYDA 168

Query: 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGF 189
           +I+RLK++  LL  E+ +        + +++++ +RL+  E RQ QM+A LA ++K P F
Sbjct: 169 EIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEF 228

Query: 190 SSALNQQAEVH-------SKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDPSPAL 242
              L  Q E+        SKKRR  R      +DDV ++S   + ++E+P A FDP  ++
Sbjct: 229 LKQLMSQNEMRKELQDAISKKRR-RRIDQGPEVDDVGTSS---SIEQESP-ALFDPQESV 283

Query: 243 NLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGV-----LRPVSAVTD----DEIEEGV 293
               ID + S ++       G+ E   QD +D G      + P   + D    + + EG+
Sbjct: 284 EF-LIDGIPSDLENSAMDAGGLVEP--QD-FDVGASEQQQIGPQGELNDNFWEELLNEGL 339

Query: 294 SSEEHDGLSNVSSPKSMDVHSSPKQAASSENPVDG 328
             EE+D   N      M+V S      +S  P  G
Sbjct: 340 VGEEND---NPVVEDDMNVLSEKMGYLNSNGPTAG 371

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 143/222 (64%), Gaps = 22/222 (9%)

Query: 9   SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFV 68
           SSN+P PFL KTY+MVDD  T+S+VSWS +  SFIVW PP+FA+DLLP  FKHNNFSSFV
Sbjct: 31  SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query: 69  RQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHS---------HS---TQSP 116
           RQLNTYGFRK+DPD+WEFANE F+RGQ+HLL++I RRKP H          HS     S 
Sbjct: 91  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query: 117 TPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176
           +   E  +   E ++ERLK++ ++L  EL R        +  +Q++ +RL+ +ENRQ Q+
Sbjct: 151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query: 177 IACLANLLKKPGFSSAL----------NQQAEVHSKKRRLLR 208
           ++ LA  ++ P F S            N++    SKKRR  R
Sbjct: 211 MSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKR 252

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 136/206 (66%), Gaps = 14/206 (6%)

Query: 15  PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTY 74
           PFL KTY+MVDDPLT+ +VSWS    SF+VWN P+FAK  LP YFKHNNFSSFVRQLNTY
Sbjct: 23  PFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTY 82

Query: 75  GFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQ-------SPTPITETERNEF 127
           GFRK+DPD+WEFANE F+RGQ+ +LK+I RRKP      Q       S     E  +   
Sbjct: 83  GFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGL 142

Query: 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187
           E ++ERL+++ ++L  EL R        E+H+Q+V +++  +E RQ QM++ LA  ++ P
Sbjct: 143 EEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSP 202

Query: 188 GFSSALNQQ---AEVH----SKKRRL 206
           GF +  +QQ   A  H    +KKRRL
Sbjct: 203 GFLNQFSQQSNEANQHISESNKKRRL 228

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
302398871	440	HSF domain class transcription factor [M	0.978	0.915	0.483	1e-107
225446710	442	PREDICTED: heat stress transcription fac	0.978	0.911	0.494	1e-103
255569843	464	Heat shock factor protein, putative [Ric	0.927	0.823	0.471	6e-96
224131376	443	predicted protein [Populus trichocarpa]	0.961	0.893	0.459	1e-94
147856184	409	hypothetical protein VITISV_017449 [Viti	0.769	0.775	0.554	6e-90
302143480	348	unnamed protein product [Vitis vinifera]	0.825	0.977	0.482	3e-89
255562528	402	Heat shock factor protein, putative [Ric	0.929	0.952	0.470	9e-88
224114609	406	predicted protein [Populus trichocarpa]	0.922	0.935	0.428	9e-82
224076924	407	predicted protein [Populus trichocarpa]	0.941	0.953	0.426	2e-80
356525313	402	PREDICTED: heat stress transcription fac	0.956	0.980	0.430	8e-79

>gi|302398871|gb|ADL36730.1| HSF domain class transcription factor [Malus x domestica]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/447 (48%), Positives = 286/447 (63%), Gaps = 44/447 (9%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           M+ SQG GS  +PAPFL KTY++VDDP +N +VSW++SG SF+VW+P +FAK++LP+YFK
Sbjct: 1   MEGSQG-GSGGAPAPFLTKTYDLVDDPSSNHMVSWTESGSSFVVWDPTEFAKEMLPMYFK 59

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS---PT 117
           HNNFSSFVRQLNTYGFRKIDP+QWEFANEEF+RG RHLLKNIHRRKP+HSHS Q+     
Sbjct: 60  HNNFSSFVRQLNTYGFRKIDPEQWEFANEEFLRGGRHLLKNIHRRKPIHSHSMQNHEYTV 119

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
            +++TER E+E KI RL  + SLL+LEL+R +  N EFE+ VQ +RE+L+ +ENRQ Q  
Sbjct: 120 ALSDTEREEYEKKISRLNHDKSLLELELQRHQRENQEFEFQVQILREQLQNMENRQKQYT 179

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFD 237
           A LA L++KPGF+S L QQ+E+HSKKRRLL      + DD     L++N QKEN  +   
Sbjct: 180 AFLAQLVQKPGFASVLVQQSEIHSKKRRLLNSNN--FPDDFGMEGLNLNPQKENLGSI-- 235

Query: 238 PSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEE-GVSSE 296
            +P + L+Q++ +ESS++FW  FL GIGEA  +DV D G L   S +   E ++  ++S 
Sbjct: 236 STPIIKLDQLETMESSLNFWEDFLHGIGEAMPEDVNDIGPLSQASPIIVTETQDTSLNSR 295

Query: 297 EHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASAT------------------------ 332
                S++SSP SM+ HS P+ AA S N +D  S T                        
Sbjct: 296 PCSPRSHLSSPNSMNAHSFPEVAAGSANILDILSITSMFPTVDFRSKSSGIDMNSKPDSA 355

Query: 333 ----EDETANSSVKN----RANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPA 384
               ++      VKN    +AND FWEQ LTETP  A +     E RD +  ++  N   
Sbjct: 356 PALAKEMVVELEVKNAEPTKANDVFWEQCLTETPGLADALEVHSERRDGDGKASDANP-- 413

Query: 385 EADSKKFWWHSNNLDTLTRHFGNLTSA 411
            A  KK WW+++N+D  T   G LT A
Sbjct: 414 -AIQKKHWWNTDNVDNFTNQIGRLTPA 439

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446710|ref|XP_002278037.1| PREDICTED: heat stress transcription factor A-4b [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/447 (49%), Positives = 285/447 (63%), Gaps = 44/447 (9%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           M+ SQ   SSNSP PFL KTYEMVDDP+T+S+VSWSQ+G SF+VWNPP+FAKDLLP YFK
Sbjct: 1   MEASQST-SSNSPPPFLTKTYEMVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFK 59

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT--- 117
           HNNFSSFVRQLNTYGFRK DP+QWEFANEEFIRGQRHLLKNIHRRKP+HSHSTQ+     
Sbjct: 60  HNNFSSFVRQLNTYGFRKADPEQWEFANEEFIRGQRHLLKNIHRRKPIHSHSTQNQVGSA 119

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
           P+ E+E+ EFEA+IERLK +   L  EL+R +  N  FE+  QS+ +R+  +E RQ +M+
Sbjct: 120 PLPESEKQEFEAEIERLKHDKGALLSELQRYKQENQFFEFQTQSLGKRVFNMELRQRKMM 179

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFD 237
           A LA +L+KPGF+S+L  Q+E+H+KKRRLL P  +    +V+  ++ V  QKE PD    
Sbjct: 180 AYLAQVLQKPGFTSSLMAQSEIHNKKRRLLMPNYLFNEANVEE-NMVVTFQKEKPDTI-- 236

Query: 238 PSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYD-FGVLRPVSAVTDDEIEEG---- 292
                N+E I+ LESS++FW  FL GIG+  + DV D FG L   S +   E+       
Sbjct: 237 SVQGENVEMIESLESSLNFWENFLYGIGQG-SADVMDGFGTLSQPSPLIITEMHSSSDPD 295

Query: 293 VSSEEHDGLSNVSSPKSMDVHSSPKQAASSENP-----------VDG------------- 328
            S++     S  SSP S D+HSSP+ A ++ +            +DG             
Sbjct: 296 TSTQPCSPKSYPSSPHSRDIHSSPELARATNHADSPAISSIYLNIDGCPKSLRIDVNSEP 355

Query: 329 --ASATE--DETANSSVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPA 384
             AS  E   E    +    AND FW QFLTETP ++ +   + E RD   G    +KP 
Sbjct: 356 TNASEVEASKECEGGTTAAGANDVFWAQFLTETPGSSDAQEVQSERRDAYGGKG-DSKP- 413

Query: 385 EADSKKFWWHSNNLDTLTRHFGNLTSA 411
             D +K+WW +NNLD LT+  G+LTS+
Sbjct: 414 -DDHRKYWWDTNNLDHLTKKMGHLTSS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569843|ref|XP_002525885.1| Heat shock factor protein, putative [Ricinus communis] gi|223534799|gb|EEF36489.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 207/439 (47%), Positives = 275/439 (62%), Gaps = 57/439 (12%)

Query: 11  NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
           N+PAPFLIKTYEMVDDP T+S+VSWS +G SF+VWNPP+FA+DLLP YFKHNNFSSFVRQ
Sbjct: 42  NAPAPFLIKTYEMVDDPSTSSIVSWSHTGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQ 101

Query: 71  LNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQ---SPTPITETERNEF 127
           LNTYGFRKIDPDQWEF NEEFIRGQRHLL NI RRKP+HSHS Q   + +P+T+ E+ E+
Sbjct: 102 LNTYGFRKIDPDQWEFGNEEFIRGQRHLLSNIRRRKPIHSHSLQNQGNTSPLTDLEKREY 161

Query: 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187
           E KI+RLK + SLLQ+E++R E     FE  + S+ ERL  +E RQ Q+++CLA L KKP
Sbjct: 162 EEKIKRLKHDKSLLQMEVQRNEMEKQAFECQIMSLGERLVSMERRQMQLVSCLAQLAKKP 221

Query: 188 GFSSALNQQAEVHSKKRRLLRPTTIEY---LDDVKSASLSVNEQKENPDATFDPSPALNL 244
           GF+SAL QQ++ H+KKRRLL           +D     L+    KENPD +  P+  LN 
Sbjct: 222 GFASALMQQSDYHNKKRRLLEFNHFSSECNTEDNPGWRLA----KENPDRS--PASTLNF 275

Query: 245 EQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEEHDGLSN- 303
           E +D+L+SS+  +  FL G+ E   QD++DF ++ P S V   ++    SS + D  S  
Sbjct: 276 EIVDKLDSSIKCFENFLLGVKETSAQDMHDFRIVSPPSPVIFRQL--SASSLDADTCSPR 333

Query: 304 --VSSPKSMDVHSSPKQAASSENPVDG-----------------ASATEDE--------- 335
              SSP SMD+ SSP + A   NPVD                  A A  DE         
Sbjct: 334 SLPSSPHSMDIPSSP-ELAGCINPVDNLKTSPPSFSDHDADFKPACAPVDEAVQESAVEA 392

Query: 336 TANSSVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSK---KFW 392
           T  ++ +   ND FWE +LTE P     S++  E ++ +S      K A+A+++   + W
Sbjct: 393 TNPTAARPGVNDHFWEYYLTEAPG----STSIQELKNNQS------KQADANNRTGDRHW 442

Query: 393 WHSNNLDTLTRHFGNLTSA 411
           W+++ +  LT+H  +L  A
Sbjct: 443 WNTDGIHDLTKHMEHLAPA 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131376|ref|XP_002321069.1| predicted protein [Populus trichocarpa] gi|222861842|gb|EEE99384.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 209/455 (45%), Positives = 276/455 (60%), Gaps = 59/455 (12%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MD SQ   SSN+P PFL KTY+MVDDPLTNS+VSWS SG SF+VWNPP+FA+DLLP YFK
Sbjct: 1   MDGSQS-NSSNAPPPFLTKTYDMVDDPLTNSVVSWSHSGCSFVVWNPPEFAQDLLPKYFK 59

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS---PT 117
           HNNFSSFVRQLNTYGFRKIDPDQWEF NEEFIRGQRH+LKNIHRRKPVHSHS Q+    +
Sbjct: 60  HNNFSSFVRQLNTYGFRKIDPDQWEFGNEEFIRGQRHILKNIHRRKPVHSHSMQNHGIIS 119

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
           P+ ETE+ E+E +I RLK + + L+LEL+R E+    FE+ + S+ ERL+ +E RQ Q++
Sbjct: 120 PLAETEKQEYEKEINRLKHDKNELELELQRNEAEKQGFEFQIVSLGERLQSMECRQKQLM 179

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFD 237
           + L  L++KP F+S L QQ+E H+KKR+LL+      LD  +      NE   +P A  D
Sbjct: 180 SFLGQLMRKPEFASLLMQQSEYHNKKRKLLK------LDYFQGDYKEENENLCSPIANLD 233

Query: 238 --PSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSS 295
             P+P L+ E +++L+SS+ F   FL  +GE+F+++V   GV    S V   E+    SS
Sbjct: 234 GLPAPMLHPESVEKLDSSLKFLEDFLYAVGESFSEEVCHVGVRSQPSMVIVREL----SS 289

Query: 296 EEHDG-----LSNVSSPKSMDVHSSPKQAASSENPV------------------------ 326
              DG      S  SSP S D+ SSP+ A    N V                        
Sbjct: 290 SSADGEPWSPRSFPSSPHSRDIRSSPELARCINNVVRQTTPSYLGDDTMPESSQLQANCK 349

Query: 327 -DGASATED------ETANSSVKNRANDQFWEQFLTETPAA--AASSSARPESRDPESGS 377
              A A+E       E  + +V N AND FW+ FLTE P       S  R E R  +   
Sbjct: 350 HSRAPASEVIKAPALEMKSPTVVNGANDLFWQHFLTEAPGPHDGQESEGRTERRITDD-- 407

Query: 378 TYVNKPAEADS-KKFWWHSNNLDTLTRHFGNLTSA 411
             +    + DS ++ WW++N +D L ++ G++ +A
Sbjct: 408 --IRSNTKPDSHERSWWNTNYIDNLAKNMGHIATA 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856184|emb|CAN80282.1| hypothetical protein VITISV_017449 [Vitis vinifera]

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/330 (55%), Positives = 233/330 (70%), Gaps = 13/330 (3%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           M+ SQ   SSNSP PFL KTYEMVDDP+T+S+VSWSQ+G SF+VWNPP+FAKDLLP YFK
Sbjct: 1   MEASQST-SSNSPPPFLTKTYEMVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFK 59

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT--- 117
           HNNFSSFVRQLNTYGFRK DP+QWEFANEEFIRGQRHLLKNIHRRKP+HSHSTQ+     
Sbjct: 60  HNNFSSFVRQLNTYGFRKADPEQWEFANEEFIRGQRHLLKNIHRRKPIHSHSTQNQVGSA 119

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
           P+ E+E+ EFEA+IERLK +   L  EL+R +  N  FE+  QS+ +R+  +E RQ +M+
Sbjct: 120 PLPESEKQEFEAEIERLKHDKGALLSELQRYKQENQFFEFQTQSLGKRVFNMELRQRKMM 179

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFD 237
           A LA +L+KPGF+S+L  Q+E+H+KKRRLL P  +    +V+  ++ V  QKE PD    
Sbjct: 180 AYLAQVLQKPGFTSSLMAQSEIHNKKRRLLMPNYLFNEANVEE-NMVVTFQKEKPDTI-- 236

Query: 238 PSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYD-FGVLRPVSAVTDDEIEEG---- 292
                N+E I+ LESS++FW  FL GIG+  + DV D FG L   S +   E+       
Sbjct: 237 SVQGENVEMIESLESSLNFWENFLYGIGQG-SADVMDGFGTLSQPSPJIITEMHSSSDPD 295

Query: 293 VSSEEHDGLSNVSSPKSMDVHSSPKQAASS 322
            S++     S  SSP S D+HSSP+ A ++
Sbjct: 296 TSTQPCSPKSYPSSPHSXDIHSSPELARAT 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143480|emb|CBI22041.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/394 (48%), Positives = 246/394 (62%), Gaps = 54/394 (13%)

Query: 23  MVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPD 82
           MVDDP+T+S+VSWSQ+G SF+VWNPP+FAKDLLP YFKHNNFSSFVRQLNTYGFRK DP+
Sbjct: 1   MVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKADPE 60

Query: 83  QWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT---PITETERNEFEAKIERLKKENS 139
           QWEFANEEFIRGQRHLLKNIHRRKP+HSHSTQ+     P+ E+E+ EFEA+IERLK +  
Sbjct: 61  QWEFANEEFIRGQRHLLKNIHRRKPIHSHSTQNQVGSAPLPESEKQEFEAEIERLKHDKG 120

Query: 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEV 199
            L  EL+R +  N  FE+  QS+ +R+  +E RQ +M+A LA +L+KPGF+S+L  Q+E+
Sbjct: 121 ALLSELQRYKQENQFFEFQTQSLGKRVFNMELRQRKMMAYLAQVLQKPGFTSSLMAQSEI 180

Query: 200 HSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDPSPALNLEQIDRLESSVDFWTF 259
           H+KKRRLL P  +             NE             A N+E I+ LESS++FW  
Sbjct: 181 HNKKRRLLMPNYL------------FNE-------------ANNVEMIESLESSLNFWEN 215

Query: 260 FLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEEHDGLSNVSSPKSM--DVHSSPK 317
           FL GIG+              ++  T+      +SS     L+    PKS+  DV+S P 
Sbjct: 216 FLYGIGQGSAD----------LARATNHADSPAISSIY---LNIDGCPKSLRIDVNSEPT 262

Query: 318 QAASSENPVDGASATEDETANSSVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGS 377
            A+  E           E    +    AND FW QFLTETP ++ +   + E RD   G 
Sbjct: 263 NASEVE--------ASKECEGGTTAAGANDVFWAQFLTETPGSSDAQEVQSERRDAYGGK 314

Query: 378 TYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSA 411
              +KP   D +K+WW +NNLD LT+  G+LTS+
Sbjct: 315 G-DSKP--DDHRKYWWDTNNLDHLTKKMGHLTSS 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562528|ref|XP_002522270.1| Heat shock factor protein, putative [Ricinus communis] gi|223538523|gb|EEF40128.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 201/427 (47%), Positives = 261/427 (61%), Gaps = 44/427 (10%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MDESQG  SSNS  PFL KTYEMVDDP TNS+VSWSQS  SFIVWNPP+FA+DLLP +FK
Sbjct: 1   MDESQG--SSNSLPPFLSKTYEMVDDPSTNSVVSWSQSNKSFIVWNPPEFARDLLPRFFK 58

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS----- 115
           HNNFSSF+RQLNTYGFRK+DP+QWEFANE+FIRGQ HL+KNIHRRKPVHSHS Q+     
Sbjct: 59  HNNFSSFIRQLNTYGFRKVDPEQWEFANEDFIRGQPHLMKNIHRRKPVHSHSLQNLQGQG 118

Query: 116 PTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQ 175
             P+TE+ER   +  IERLK E   L LEL+R+E     FE  +Q+++E+L+ +E RQ  
Sbjct: 119 SNPLTESERQSLKDDIERLKHEKEALVLELKRQERQRQGFEMQMQTLKEKLQQMERRQQT 178

Query: 176 MIACLANLLKKPGFSSALNQQAEV-HSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDA 234
           M++ +A +L+KPG +  L  Q E  H +KRRL R   I Y  D  S        +EN D+
Sbjct: 179 MVSFVARVLQKPGLALNLMSQMEPGHDRKRRLPR---IGYFYDEASIEDCQTIARENADS 235

Query: 235 TFDPSPAL-NLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGV 293
               S AL N+EQ ++LESS+  W        E+   DV    + R  +     E++E  
Sbjct: 236 N---SVALSNVEQFEQLESSLTLW--------ESIRDDVQT-NIQRDSTM----ELDEST 279

Query: 294 SSEEHDGLSNVS-----SPKS--MDVHSSPKQAASSE--NPVDGASATEDETANSSVKNR 344
           S  E   +S V       PKS  +D++S P  A++ E   P + A+ T   T  + V   
Sbjct: 280 SCAESPAISCVPLNIDIRPKSPTIDMNSEPAAASAPEPDPPKEQAAGTAPPTVATGV--- 336

Query: 345 ANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTRH 404
            ND FWEQFLTE P +  +   + E +D       + KP  +D +KFWW+  N++ L   
Sbjct: 337 -NDVFWEQFLTENPGSTDTQEVQSERKDSNDRKNEI-KP--SDQEKFWWNMRNVNNLAEQ 392

Query: 405 FGNLTSA 411
            G+LT A
Sbjct: 393 MGHLTPA 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114609|ref|XP_002316809.1| predicted protein [Populus trichocarpa] gi|222859874|gb|EEE97421.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 186/434 (42%), Positives = 262/434 (60%), Gaps = 54/434 (12%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MDESQG  +SNS  PFL K YEMVDDP ++S+VSWSQ+  SF+VWNPP+FA+DLLP +FK
Sbjct: 1   MDESQG--TSNSLPPFLAKAYEMVDDPSSDSIVSWSQNNKSFVVWNPPEFARDLLPRFFK 58

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS----- 115
           HNNFSSF+RQLNTYGFRKIDP+QWEFANE+FIRGQ HL+KNIHRRKPVHSHS Q+     
Sbjct: 59  HNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPHLMKNIHRRKPVHSHSMQNLQGQG 118

Query: 116 PTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQ 175
              +T++ER   +  IE+LK++   L LEL+++E     FE  ++ ++E+L+  E  Q  
Sbjct: 119 SNLLTDSERQSMKDDIEKLKRDKQALILELQKQEQERKGFEMQIEGLKEKLQQTECIQQT 178

Query: 176 MIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYL---------DDVKSASLSVN 226
           +++ +A +L KPG +  +  Q E   +KRRL R   I YL           V S +LS  
Sbjct: 179 IVSFVARVLPKPGLALNIMPQLEGRDRKRRLPR---IGYLYSEASNEDNQMVTSQALS-- 233

Query: 227 EQKENPDATFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTD 286
             +EN D+  +    LN+EQ ++LESS+ FW   +  IG+ +N   Y+   +        
Sbjct: 234 --RENADS--NSVALLNMEQFEQLESSLTFWENMVHDIGQTYN---YNNSTI-------- 278

Query: 287 DEIEEGVSSEEHDGLSNVS-----SPKS--MDVHSSPKQAASSENPVDGASATEDETANS 339
            E+++  S  +   +S V       PKS  +D++S P  A + E PV    + +++ A +
Sbjct: 279 -EMDDSTSGAQSPAISCVHLNVDFRPKSPGIDMNSEPSAAVAPE-PV----SPKEQLAGT 332

Query: 340 --SVKNRANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNN 397
             +V    ND FWEQFLTE P +  +   + E +D +     + KP   D  KFWW+  N
Sbjct: 333 APTVATGVNDVFWEQFLTENPGSTNAQEVQSERKDSDGRKGEI-KP--VDPGKFWWNMRN 389

Query: 398 LDTLTRHFGNLTSA 411
           ++ LT   G+LT A
Sbjct: 390 VNNLTEQMGHLTPA 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076924|ref|XP_002305052.1| predicted protein [Populus trichocarpa] gi|222848016|gb|EEE85563.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 182/427 (42%), Positives = 247/427 (57%), Gaps = 39/427 (9%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MDESQG  S NS  PFL KTYEMVDDP T+ +VSWSQS  SF VW+PP+FA+DLLP +FK
Sbjct: 1   MDESQG--SPNSLPPFLAKTYEMVDDPSTDPIVSWSQSNKSFTVWDPPEFARDLLPRFFK 58

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS----- 115
           HNNFSSF+RQLNTYGFRKIDP+QWEFANE+FIRGQ  L+KNIHRRKPVHSHS Q+     
Sbjct: 59  HNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPFLMKNIHRRKPVHSHSLQNLQGQG 118

Query: 116 PTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQ 175
              +T++ER   +  IERLK++   L LEL+ +E     FE  ++ ++E+L+ +E RQ  
Sbjct: 119 SNLLTDSERQSMKDDIERLKRDKEALILELQMQEQERKGFEMQIEGLKEKLQQMERRQQT 178

Query: 176 MIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQ---KENP 232
           M++ +  ++ KPG +  L  Q E H +KRRL R   +         + +V  Q   +EN 
Sbjct: 179 MVSFVTRVMPKPGLALNLMPQLEGHDRKRRLPRIGCLHSEASSNEDNQTVTSQALSRENA 238

Query: 233 DATFDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEG 292
           D   +    LN+EQ D+LESS+ FW   +  + +  + +                E++E 
Sbjct: 239 DG--NSFALLNMEQFDQLESSLTFWENMVNDVVQTHSHNTKTI------------EMDES 284

Query: 293 VSSEEHDGLSNVS-----SPKS--MDVHSSPKQAASSENPVDGASATEDETANS-SVKNR 344
            S  E   +S         PK+  +D++S P  A   E PV   S  E     + +V   
Sbjct: 285 TSGAESPAISCAQLIFDFRPKTPGIDMNSEPSIAVVPE-PV---SPKEQPAGTAPAVATG 340

Query: 345 ANDQFWEQFLTETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTRH 404
            ND FWEQFLTE P +  +   + E +D +     + KP   D +KFWW   N++ LT  
Sbjct: 341 VNDVFWEQFLTENPGSTDTQEVQSERKDSDGRKNEI-KP--GDPRKFWWDMRNVNNLTEQ 397

Query: 405 FGNLTSA 411
            G+LT A
Sbjct: 398 MGHLTPA 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525313|ref|XP_003531269.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  300 bits (768), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 179/416 (43%), Positives = 250/416 (60%), Gaps = 22/416 (5%)

Query: 1   MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
           MD++QG  SSNS  PFL KTYEMVDDP T+S+VSWS +  SFIVWNPP+FA+DLLP +FK
Sbjct: 1   MDDAQG--SSNSLPPFLAKTYEMVDDPSTDSVVSWSVTSKSFIVWNPPEFARDLLPRFFK 58

Query: 61  HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS---TQSPT 117
           HNNFSSF+RQLNTYGF+K+DP+QWEFAN++F+RGQ HL+KNIHRRKPVHSHS    Q+  
Sbjct: 59  HNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQG 118

Query: 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177
           P+ E+ER  F  +IE+LK +   L +EL++ +     +E  +   ++RL  LE  Q +M+
Sbjct: 119 PLGESERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQIHCSKDRLEKLEQNQQRMV 178

Query: 178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNE-QKENPDATF 236
           + ++++L+KP  S  +    E   +KRRL R       D V+ A  +     +EN D T 
Sbjct: 179 SSVSHVLQKPVISVNILPLTETLDRKRRLPRSGHFYDEDGVEDAIETCQMLPRENADHT- 237

Query: 237 DPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSE 296
                LN+E++D+LESS+ FW   +  IG+ F Q      +    S          +S  
Sbjct: 238 -TVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSSMDLDESTSCAD----SPSLSCA 292

Query: 297 EHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASATEDETANSSV-KNRANDQFWEQFLT 355
           + D      SP  +D++S P  AA  E PV    A++++ A ++V     ND FWEQFLT
Sbjct: 293 QLDVEVRHKSP-GIDMNSEPTTAAVPE-PV----ASKEQPAGTTVAATGVNDVFWEQFLT 346

Query: 356 ETPAAAASSSARPESRDPESGSTYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSA 411
           E P A+ +   + E +D E G     KP  +D  KFWW+  N + L    G++  A
Sbjct: 347 EDPGASETREVQSERKDYE-GRKNEGKP--SDLNKFWWNKRNANNLPEQMGHVGQA 399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.949	0.975	0.385	3.2e-65
TAIR|locus:2172003	345	RHA1 "AT5G45710" [Arabidopsis	0.531	0.634	0.474	4.2e-59
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.487	0.431	0.461	1.8e-54
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.584	0.514	0.414	3.7e-52
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.266	0.222	0.684	5e-50
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.475	0.407	0.481	2.6e-49
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.759	0.645	0.368	2.3e-48
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.444	0.444	0.478	1.4e-44
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.546	0.652	0.424	9.3e-43
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.439	0.665	0.430	2.2e-40

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 161/418 (38%), Positives = 226/418 (54%)

Query:     1 MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
             MDE+    SS+S  PFL KTYEMVDD  ++S+VSWSQS  SFIVWNPP+F++DLLP +FK
Sbjct:     1 MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFK 60

Query:    61 HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST---QSP- 116
             HNNFSSF+RQLNTYGFRK DP+QWEFAN++F+RGQ HL+KNIHRRKPVHSHS    Q+  
Sbjct:    61 HNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQL 120

Query:   117 TPITETERNEFEAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQM 176
              P+T++ER     +IERL KE                 FE  V+ ++ERL+++E RQ  M
Sbjct:   121 NPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTM 180

Query:   177 IACLANLLKKPGFSSALNQQA-EVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDAT 235
             ++ ++ +L+KPG +  L+    E + +KRR  R   IE+  D      +        + +
Sbjct:   181 VSFVSQVLEKPGLALNLSPCVPETNERKRRFPR---IEFFPDEPMLEENKTCVVVREEGS 237

Query:   236 FDPSPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSS 295
               PS      Q+++LESS+  W        E    D  +  +L+  S +T D ++E  + 
Sbjct:   238 TSPSSHTREHQVEQLESSIAIW--------ENLVSDSCE-SMLQSRSMMTLD-VDESSTF 287

Query:   296 EEHDGLSNVSSPKSMDVHSSPKQAASSEN-PVDGASATEDETANSSVKNR-ANDQFWEQF 353
              E   LS +       + S P       N   DG+       A        AND FW+QF
Sbjct:   288 PESPPLSCIQLSVDSRLKSPPSPRIIDMNCEPDGSKEQNTVAAPPPPPVAGANDGFWQQF 347

Query:   354 LTETXXXXXXXXXXXXXXXXXXGSTYVNKPAEADSKKFWWHSNNLDTLTRHFGNLTSA 411
              +E                        +K A   ++K WW+S N++ +T   G+LTS+
Sbjct:   348 FSENPGSTEQREVQLERKDDK------DK-AGVRTEKCWWNSRNVNAITEQLGHLTSS 398

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 110/232 (47%), Positives = 158/232 (68%)

Query:     1 MDESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFK 60
             MDE+ G GSS+ P PFL KTYEMVDD  ++S+V+WS++  SFIV NP +F++DLLP +FK
Sbjct:     1 MDENNG-GSSSLP-PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFK 58

Query:    61 HNNFSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST---QSPT 117
             H NFSSF+RQLNTYGFRK+DP++WEF N++F+RG+ +L+KNIHRRKPVHSHS    Q+  
Sbjct:    59 HKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQN 118

Query:   118 PITETERNEFEAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMI 177
             P+TE+ER   E +IERLK E                EFE  V ++++RL+++E  Q  ++
Sbjct:   119 PLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIV 178

Query:   178 ACLANLLKKPGFSSALNQQAEVHSKKRRLLR----PTTIEYLDDVKSASLSV 225
             A ++ +L KPG S  LN   E H +++R  +    P +  +++ V+    S+
Sbjct:   179 AYVSQVLGKPGLS--LN--LENHERRKRRFQENSLPPSSSHIEQVEKLESSL 226

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048530 "fruit morphogenesis" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 96/208 (46%), Positives = 136/208 (65%)

Query:     4 SQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNN 63
             S G+G+   PAPFL+KTYEMVDD  T+ +VSWS +  SFIVWN  +F++ LLP YFKHNN
Sbjct:    13 SGGEGAGG-PAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNN 71

Query:    64 FSSFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETE 123
             FSSF+RQLNTYGFRKIDP++WEF N++FI+ Q+HLLKNIHRRKP+HSHS   P   T+ E
Sbjct:    72 FSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHS-HPPASSTDQE 130

Query:   124 RNEFEAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183
             R   + ++++L +E +                ++  + + E +  +ENRQ +++  L   
Sbjct:   131 RAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETA 190

Query:   184 LKKPGFSSALNQQAE-----VHSKKRRL 206
             ++ P F     ++ E      ++KKRRL
Sbjct:   191 IRNPTFVKNFGKKVEQLDISAYNKKRRL 218

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
 Identities = 106/256 (41%), Positives = 150/256 (58%)

Query:    11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
             +S  PFL KTY+MVDDPLT+ +VSWS    SF+VWN P+FAK  LP YFKHNNFSSFVRQ
Sbjct:    19 SSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQ 78

Query:    71 LNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT-------PITETE 123
             LNTYGFRK+DPD+WEFANE F+RGQ+ +LK+I RRKP      Q P           E  
Sbjct:    79 LNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVG 138

Query:   124 RNEFEAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183
             +   E ++ERL+++ +                E+H+Q+V +++  +E RQ QM++ LA  
Sbjct:   139 KFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKA 198

Query:   184 LKKPGFSSALNQQ---AEVHSKKRRLLRPTTIEYLDDVKSASLSVN---EQKENPDATFD 237
             ++ PGF +  +QQ   A  H  +    R   +E  D + S S  VN    Q     ++ +
Sbjct:   199 VQSPGFLNQFSQQSNEANQHISESNKKRRLPVE--DQMNSGSHGVNGLSRQIVRYQSSMN 256

Query:   238 PSPALNLEQIDRLESS 253
              +    L+QI ++ ++
Sbjct:   257 DATNTMLQQIQQMSNA 272

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 5.0e-50, Sum P(3) = 5.0e-50
 Identities = 76/111 (68%), Positives = 93/111 (83%)

Query:     9 SSNS-PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
             ++NS P PFL KTY+MV+DP T+++VSWS +  SFIVW+PP+F++DLLP YFKHNNFSSF
Sbjct:    45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query:    68 VRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP 118
             VRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK I RRK V  H + S  P
Sbjct:   105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNP 155

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 102/212 (48%), Positives = 136/212 (64%)

Query:    11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
             NS  PFL KTY+MVDDPLTN +VSWS    SF+VW+ P+F+K LLP YFKHNNFSSFVRQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    71 LNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITET------ER 124
             LNTYGFRK+DPD+WEFANE F+RG++ LLK+I RRKP H    Q  T +  +      E 
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   125 NEF--EAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182
              +F  E ++ERLK++ +                E  +Q+V ++++ +E RQ QM++ LA 
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   183 LLKKPGFSSAL--------NQQAEVHSKKRRL 206
              ++ PGF + L        N+Q    +KKRRL
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRL 234

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 125/339 (36%), Positives = 180/339 (53%)

Query:     9 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFV 68
             SSN+P PFL KTY+MVDD  T+S+VSWS +  SFIVW PP+FA+DLLP  FKHNNFSSFV
Sbjct:    31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query:    69 RQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHS---------HSTQSPTPI 119
             RQLNTYGFRK+DPD+WEFANE F+RGQ+HLL++I RRKP H          HS    + +
Sbjct:    91 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query:   120 TE-TERNEF--EAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQM 176
             +   E  +F  E ++ERLK++ +                +  +Q++ +RL+ +ENRQ Q+
Sbjct:   151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query:   177 IACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATF 236
             ++ LA  ++ P F S   QQ    ++  R +  T+ +     K   +  N     PD   
Sbjct:   211 MSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRR--FKRDGIVRNNDSATPDGQI 268

Query:   237 DP-SPALNLEQIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSS 295
                 P ++ EQ   +   +     +  G          D G L      T +  E   SS
Sbjct:   269 VKYQPPMH-EQAKAMFKQLMKMEPYKTG----------DDGFLLGNGTSTTEGTEMETSS 317

Query:   296 EEHDGLSNVSSPKSMDVHSSPKQAASSENPVDGASATED 334
              +  G++    P + ++ SS     + EN    + ATE+
Sbjct:   318 NQVSGITLKEMPTASEIQSSSPIETTPENVSAASEATEN 356

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 88/184 (47%), Positives = 119/184 (64%)

Query:    11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
             N   PFL KT+++VDDP  + ++SW  +G SF+VW+P +FA+ +LP  FKHNNFSSFVRQ
Sbjct:    51 NPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQ 110

Query:    71 LNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQ-SPTPITETERNEFEA 129
             LNTYGFRKID D+WEFANE F+RG++HLLKNIHRR+   S+ T  S T  ++    E   
Sbjct:   111 LNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGG 170

Query:   130 KIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGF 189
             +IE+L+KE              +     HV +V +RL+  E RQ Q+++ LA L +  GF
Sbjct:   171 EIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGF 230

Query:   190 SSAL 193
                L
Sbjct:   231 LERL 234

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 99/233 (42%), Positives = 133/233 (57%)

Query:     9 SSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFV 68
             +   P PFL KTYEMV+DP T+++VSWS    SF+VW+   F+  LLP YFKH+NFSSF+
Sbjct:    38 NETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFI 97

Query:    69 RQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQ---SPTPITETERN 125
             RQLNTYGFRKIDPD+WEFANE F+ GQ+HLLKNI RR+ +   +     S     E  + 
Sbjct:    98 RQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQY 157

Query:   126 EFEAKIERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185
              F+ ++ERLK+++              H  +  V ++ +RL   E RQ QM+  LA  L 
Sbjct:   158 GFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALN 217

Query:   186 KPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSA-SLSVNEQKENPDATFD 237
              P F     QQ  V SK+++ L    +     + S  SL   E+    D  FD
Sbjct:   218 NPNFV----QQFAVMSKEKKSLFGLDVGRKRRLTSTPSLGTMEENLLHDQEFD 266

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 83/193 (43%), Positives = 119/193 (61%)

Query:    11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
             N+P PFL KT+EMVDDP T+ +VSW++ G SF+VW+   F+  LLP +FKH+NFSSF+RQ
Sbjct:    25 NAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQ 84

Query:    71 LNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAK 130
             LNTYGFRKI+ ++WEFANEEF+ GQR LLKNI RR P     T S +P +    NE    
Sbjct:    85 LNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPF----TPSSSP-SHDACNE---- 135

Query:   131 IERLKKENSXXXXXXXXXXSGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFS 190
                L++E                  + +++++ +R+   E +Q QM++ LA  ++ P F 
Sbjct:   136 ---LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFLARAMQSPSFL 192

Query:   191 SALNQQAEVHSKK 203
               L +Q +   K+
Sbjct:   193 HQLLKQRDKKIKE 205

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49403	HFA4A_ARATH	No assigned EC number	0.3855	0.9247	0.9501	yes	no
Q94J16	HFA4B_ORYSJ	No assigned EC number	0.4081	0.9271	0.8681	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018812001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (442 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	1e-51
smart00415	105	smart00415, HSF, heat shock factor	6e-51
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	5e-29

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  167 bits (426), Expect = 1e-51
 Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 15  PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTY 74
           PFL K YE+++DP  + ++SWS+ G SFI+W+P +FAK +LP YFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 75  GFRKIDPD--QWEFANEEFIRGQRHLLKNIHRRKP 107
           GF K+  D   WEFA+  F RGQ+ LL  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  166 bits (422), Expect = 6e-51
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 11/105 (10%)

Query: 12  SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQL 71
            P PFL K Y +V+DP T+ ++SWS SG SF++W+P +FAK+LLP YFKHNNFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 72  NTYGFRKIDP-----------DQWEFANEEFIRGQRHLLKNIHRR 105
           N YGFRK+DP           DQWEFAN +F+RGQ  LL+NI R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  114 bits (286), Expect = 5e-29
 Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 11/111 (9%)

Query: 7   QGSSNSPAP-FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFS 65
             S  S    F+ K Y+++++P    L+ WS  G SF++ +P +F K +LP YFKH NF+
Sbjct: 3   MSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFA 62

Query: 66  SFVRQLNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRRK 106
           SFVRQLN YGF K+          + + WEF N+ F  G   LLK I R+K
Sbjct: 63  SFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKK 113

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.3
smart00413	87	ETS erythroblast transformation specific domain. v	93.25
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	92.77
KOG3806	177	consensus Predicted transcription factor [Transcri	89.89
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.79
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.04
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	88.27
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.99
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	86.85
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	86.56
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.4
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.04
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.09
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.0
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	81.83
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	81.53
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	81.38
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.8

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=3.1e-44  Score=355.05  Aligned_cols=192  Identities=44%  Similarity=0.780  Sum_probs=172.3

Q ss_pred             CCCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC--CCC
Q 015162            6 GQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID--PDQ   83 (412)
Q Consensus         6 ~~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~   83 (412)
                      |+.....+++|+.|||.||+||++++||+|+++|.+|||||+.+|++.+||+||||+||+|||||||+||||||+  +++
T Consensus         5 ~~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~   84 (304)
T KOG0627|consen    5 GLSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDR   84 (304)
T ss_pred             CccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCc
Confidence            345566899999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             cccccccccccccccccccccccCCCCCCC---CC---CCCC-----ChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 015162           84 WEFANEEFIRGQRHLLKNIHRRKPVHSHST---QS---PTPI-----TETERNEFEAKIERLKKENSLLQLELRRRESGN  152 (412)
Q Consensus        84 ~eF~h~~F~Rg~~~lL~~I~Rr~~~~s~~~---~~---~~~~-----t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqq  152 (412)
                      |||+|++|+||+++||++|+|||+.+....   ..   ...+     ....+..+..++.+|+++++.|+.++.+|++++
T Consensus        85 wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~  164 (304)
T KOG0627|consen   85 WEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQ  164 (304)
T ss_pred             eeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999998776543   11   0001     112244578899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhh
Q 015162          153 HEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQA  197 (412)
Q Consensus       153 q~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q~~  197 (412)
                      ..+..+++.+.+++...+.+|+.|+.|++++++.|+|+.++.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  165 DALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999999998876544

>smart00415 HSF heat shock factor

Probab=100.00  E-value=2e-34  Score=245.00  Aligned_cols=94  Identities=67%  Similarity=1.282  Sum_probs=90.8

Q ss_pred             CCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccCC----------
Q 015162           12 SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDP----------   81 (412)
Q Consensus        12 ~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~----------   81 (412)
                      .+|.|+.|||+||+|+++++||+|+++|++|||.|+..|.+.|||+||||+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999875          


Q ss_pred             -CCcccccccccccccccccccccc
Q 015162           82 -DQWEFANEEFIRGQRHLLKNIHRR  105 (412)
Q Consensus        82 -~~~eF~h~~F~Rg~~~lL~~I~Rr  105 (412)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999986

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=2e-34  Score=243.49  Aligned_cols=93  Identities=55%  Similarity=1.042  Sum_probs=81.5

Q ss_pred             chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccCCC---------Ccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPD---------QWE   85 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---------~~e   85 (412)
                      +||.|||+||+||.+++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999653         389


Q ss_pred             cccccccccccccccccccccC
Q 015162           86 FANEEFIRGQRHLLKNIHRRKP  107 (412)
Q Consensus        86 F~h~~F~Rg~~~lL~~I~Rr~~  107 (412)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999874

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=1.5e-33  Score=275.82  Aligned_cols=155  Identities=33%  Similarity=0.601  Sum_probs=118.8

Q ss_pred             CCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC-C----
Q 015162            7 QGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID-P----   81 (412)
Q Consensus         7 ~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~----   81 (412)
                      |+....++.|+.|||.||++|++.++|+|+++|++|||+|+++|.+.|||+||||+||+|||||||+||||||. .    
T Consensus         4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~   83 (282)
T COG5169           4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR   83 (282)
T ss_pred             CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence            45667788999999999999999999999999999999999999999999999999999999999999999996 2    


Q ss_pred             -----CCcccccccccccccccccccccccCCCCC-CCCC-CCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHH
Q 015162           82 -----DQWEFANEEFIRGQRHLLKNIHRRKPVHSH-STQS-PTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHE  154 (412)
Q Consensus        82 -----~~~eF~h~~F~Rg~~~lL~~I~Rr~~~~s~-~~~~-~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~  154 (412)
                           ..|||.|++|++|..++|++|+|+|..... ...+ +.+++..      .+++.+-..+..+..++.+|...++.
T Consensus        84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~------~~~~~~i~~~~~~~~~~S~l~~~~~~  157 (282)
T COG5169          84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMN------IEVENIILPQSELYNSLSSLSNVNQT  157 (282)
T ss_pred             cccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccc------hhhhhhhchhcccCcchhHHhhhhHH
Confidence                 359999999999999999999996643221 1111 1111110      23444444555555666666666666


Q ss_pred             HHHHHHHHHHHHH
Q 015162          155 FEYHVQSVRERLR  167 (412)
Q Consensus       155 l~~qvq~L~erL~  167 (412)
                      ++..+..+++.+.
T Consensus       158 ~~~~~~~lk~~~~  170 (282)
T COG5169         158 LLLYLNELKEYNY  170 (282)
T ss_pred             Hhhhhccccchhh
Confidence            6666666655443

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.30  E-value=0.0057  Score=50.68  Aligned_cols=58  Identities=22%  Similarity=0.441  Sum_probs=45.3

Q ss_pred             HHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc--cccCCCCchhhhhcccccc
Q 015162           17 LIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP--LYFKHNNFSSFVRQLNTYG   75 (412)
Q Consensus        17 l~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp--~~Fkh~nfsSFvRQLN~YG   75 (412)
                      ..=|.++|.|++..++|+|.. .+..|.|.||+++++. ..  +--...+|.++-|-|..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l-WG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL-WGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH-HHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH-HHHHcCCccccHHHHHHHHHHHh
Confidence            345788999999999999998 9999999999999864 22  1223457889999887763

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=93.25  E-value=0.075  Score=44.37  Aligned_cols=57  Identities=21%  Similarity=0.425  Sum_probs=42.7

Q ss_pred             HHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc
Q 015162           18 IKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        18 ~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y   74 (412)
                      .=|.++|.||++.++|+|.+ ++.-|.+.|+++.++.=-- +-=..-||..+-|-|..|
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy   64 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY   64 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence            34678999999999999998 6889999999988774111 112345777788877766

variation of the helix-turn-helix motif

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.77  E-value=0.51  Score=37.92  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN  182 (412)
Q Consensus       127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~  182 (412)
                      +.-+|+.||..++.|..|.+.+++....+..+-..|++....   +|..+-+.|.+
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk   75 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence            567899999999999999999999999999998888887554   44455444443

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=89.89  E-value=0.33  Score=45.42  Aligned_cols=60  Identities=18%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             chHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhcccc-ccCCCCchhhhhccccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLPL-YFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~Y   74 (412)
                      ....-|.++|.|+++.++|+|.. +|--|.+.||++.++.---+ -=..-||.-.-|-|..|
T Consensus        70 qLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   70 QLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             hHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            44556678899999999999998 78899999999999852221 11244666666666555

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.79  E-value=1.8  Score=35.51  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC  179 (412)
Q Consensus       127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf  179 (412)
                      +.-||+.||.++..|..+.+.++.....+..+.+.|++....-+.|-+.|+..
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk   75 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   75 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888888888888777777777777777777655544444444443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.04  E-value=2.4  Score=41.21  Aligned_cols=63  Identities=16%  Similarity=0.301  Sum_probs=47.4

Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162          123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK  185 (412)
Q Consensus       123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq  185 (412)
                      +...+..++..|+++.+.|.....+++......+.++..|++++...+...+.|.-+|.+++.
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777777777777777777777777777777888888888888888888887777665

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=88.27  E-value=5.4  Score=32.15  Aligned_cols=51  Identities=18%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACL  180 (412)
Q Consensus       130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL  180 (412)
                      .|..|+.++..|..+-..|.+++..+..+.+.|++.......+...++..|
T Consensus        19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen   19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444444444444444444444555555555544444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.99  E-value=4.4  Score=35.77  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=40.8

Q ss_pred             hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          121 ETERNEFEAKIERLKKENSLLQLELRRRESGNHEF---EYHVQSVRERLRYLENRQTQMIACLA  181 (412)
Q Consensus       121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l---~~qvq~L~erL~~~e~~Qq~mlsfL~  181 (412)
                      +.|...+..++.+|...+..+..||.+|-.++..+   ..++..|+..+..++.+-+.++..|.
T Consensus        29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34556667777777777777777777777766444   35666667777777777666665543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=86.85  E-value=2.5  Score=40.44  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             ccccccccccccccccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162           87 ANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL  166 (412)
Q Consensus        87 ~h~~F~Rg~~~lL~~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL  166 (412)
                      .||.|-..+++||..|+=.-+     ..                     .-..-...++.+||++++.++.++..|.+.-
T Consensus        17 ~~PdFf~~~~~ll~~l~~ph~-----~~---------------------~avSL~erQ~~~LR~~~~~L~~~l~~Li~~A   70 (225)
T PF04340_consen   17 QHPDFFERHPELLAELRLPHP-----SG---------------------GAVSLVERQLERLRERNRQLEEQLEELIENA   70 (225)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhCHHHHHHcCCCCC-----CC---------------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999874221     00                     1122334455666666667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCch
Q 015162          167 RYLENRQTQMIACLANLLKKPGF  189 (412)
Q Consensus       167 ~~~e~~Qq~mlsfL~~vlq~p~f  189 (412)
                      +..+..++++..+..+++.-..+
T Consensus        71 r~Ne~~~~~~~~l~l~LL~a~sl   93 (225)
T PF04340_consen   71 RENEAIFQRLHRLVLALLAARSL   93 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--SH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCH
Confidence            77777777777777777766543

; PDB: 3E98_B.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=86.56  E-value=2.1  Score=31.51  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162          127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR  167 (412)
Q Consensus       127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~  167 (412)
                      ++.+.+.||+....|..+..+|.++++.|..++..|..+++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45677888888888888888888888888888888887764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.40  E-value=5.1  Score=36.34  Aligned_cols=60  Identities=23%  Similarity=0.317  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL  183 (412)
Q Consensus       124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v  183 (412)
                      ...+..+|..|......|..+|..++.+...+.++++.+.+|+...+..+..+.+.|..+
T Consensus        54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~  113 (140)
T PF10473_consen   54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK  113 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            445777888888888889999999999999999999999999998888887777666553

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.04  E-value=9.1  Score=30.84  Aligned_cols=60  Identities=23%  Similarity=0.317  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162          125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL  184 (412)
Q Consensus       125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl  184 (412)
                      ..++..|..+=..+..|..|+.+|++++..+..+...|++......+.+...-..|..++
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777788888888888888888888888888877777666665555555433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.09  E-value=3.6  Score=46.33  Aligned_cols=62  Identities=15%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015162          126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP  187 (412)
Q Consensus       126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p  187 (412)
                      .++..+..|+...+.-..+|..++++...+......|.+|+.....+|+.++..+.++++..
T Consensus       562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l  623 (717)
T PF10168_consen  562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL  623 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556777888888888889999999999999999999999999999999999888877643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.00  E-value=7.9  Score=30.34  Aligned_cols=46  Identities=17%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162          124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL  169 (412)
Q Consensus       124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~  169 (412)
                      ++.+.+++...|..+..+...|+....++..|..+|..|++++..+
T Consensus        13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~   58 (61)
T PF08826_consen   13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567788888888888888888888888888888888888877543

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=81.83  E-value=5.5  Score=34.43  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162          125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN  171 (412)
Q Consensus       125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~  171 (412)
                      ..++..|..|-.+...|..++..|-++|..|..+.+.|++||...++
T Consensus        11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677888888888888888899999999999999999999987655

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=81.53  E-value=7.3  Score=36.13  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN  182 (412)
Q Consensus       131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~  182 (412)
                      ...++.++..|..++..|++++..|+.++..|.+++..++.-=+.|+..+.+
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R  150 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR  150 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888888888888877777666666665554

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=81.38  E-value=16  Score=28.93  Aligned_cols=57  Identities=9%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN  182 (412)
Q Consensus       126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~  182 (412)
                      .+.+++.+++.+...+...+..+++.....+.++..+.++|..++..++=+..++.-
T Consensus         3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG   59 (71)
T PF10779_consen    3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG   59 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888888888888999999999999999999999999999888877666655544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.80  E-value=12  Score=37.96  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=46.0

Q ss_pred             hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA  178 (412)
Q Consensus       122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls  178 (412)
                      .+...+..+++.|+++...|..||..|+++...+..++..+++.+...++...+...
T Consensus        43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~   99 (314)
T PF04111_consen   43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWR   99 (314)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445668889999999999999999999999999999999999887777655544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		1e-22
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		3e-18
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		7e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		6e-13
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		7e-13
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-12
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-12
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		4e-12

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 12/109 (11%)
Query: 8   GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
           G SN PA FL K + +V DP T++L+ WS SG SF V++   FAK++LP YFKHNN +SF
Sbjct: 13  GPSNVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 68  VRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
           VRQLN YGFRK+           + D  EF +  F+RGQ  LL+NI R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 10  SNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVR 69
           S  PA FL K + +VDD  TN L+ W++ G SF++ N   FAK+LLPL +KHNN +SF+R
Sbjct: 2   SGVPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60
Query: 70  QLNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
           QLN YGF KI          D D+ EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Query: 8  GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
          GS   PA F+ K + MV+D      + WS SG S +V N   F +++LP YFKH+NF+SF
Sbjct: 8  GSMARPA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASF 66
Query: 68 VRQLNTYGFRKI-----------DPDQWEFANE 89
          VRQLN YG+ K+           +  +WEF NE
Sbjct: 67 VRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
          PA F+ K + MV+D      + WS SG S +V N   F +++LP YFKH+NF+SFVRQLN
Sbjct: 3  PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61
Query: 73 TYGFRKI-----------DPDQWEFANE 89
           YG+ K+           +  +WEF NE
Sbjct: 62 MYGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
          PA F+ K + MV+D      + WS SG S +V N   F +++LP YFKH+NF+SFVRQLN
Sbjct: 1  PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
           YG+ K+           +  +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
          PA F+ K + MV+D      + WS SG S +V N   F +++L  YFKH+NF+SFVRQLN
Sbjct: 1  PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
           YG+ K+           +  +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
          PA F+ K + MV+D      + WS SG S +V N   F +++L  YFKH+NF+SFVRQLN
Sbjct: 1  PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
           YG+ K+           +  +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
          PA F+ K +  V+D      + WS SG S +V N   F +++LP YFKH+NF+SFVRQLN
Sbjct: 3  PA-FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61
Query: 73 TYGFRKI-----------DPDQWEFANE 89
           YG+ K+           +  +WEF NE
Sbjct: 62 XYGWHKVQDVKSGSXLSNNDSRWEFENE 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1hks_A	106	Heat-shock transcription factor; transcription reg	1e-52
2ldu_A	125	Heat shock factor protein 1; structural genomics,	2e-52
3hts_B	102	Heat shock transcription factor; transcription reg	4e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  170 bits (432), Expect = 1e-52
 Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 11  NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
           +    FL K + +VDD  TN L+ W++ G SF++ N   FAK+LLPL +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 71  LNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
           LN YGF KI          D D+ EF++  F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  170 bits (432), Expect = 2e-52
 Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 11/120 (9%)

Query: 2   DESQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKH 61
                    ++   FL K + +V DP T++L+ WS SG SF V++   FAK++LP YFKH
Sbjct: 6   HHHSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKH 65

Query: 62  NNFSSFVRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRRKPVHS 110
           NN +SFVRQLN YGFRK+           + D  EF +  F+RGQ  LL+NI R+    S
Sbjct: 66  NNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  145 bits (367), Expect = 4e-43
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 11/99 (11%)

Query: 4   SQGQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNN 63
            +    S +   F+ K + MV+D      + WS SG S +V N   F +++LP YFKH+N
Sbjct: 3   RRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN 62

Query: 64  FSSFVRQLNTYGFRKI-----------DPDQWEFANEEF 91
           F+SFVRQLN YG+ K+           +  +WEF NE  
Sbjct: 63  FASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 42/292 (14%), Positives = 80/292 (27%), Gaps = 98/292 (33%)

Query: 119 ITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178
           +     N  E  +E L+K    +      R   +   +  + S++  LR           
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----------- 235

Query: 179 CLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYLDDVKSASLSVNEQKENPDATFDP 238
               LLK   +             +  LL    +  L +V++A              ++ 
Sbjct: 236 ---RLLKSKPY-------------ENCLL----V--LLNVQNAK------------AWN- 260

Query: 239 SPALNLE-QIDRLESSVDFWTFFLCGIGEAFNQDVYDFGVLRPVSAVTDDEIEEGVSSEE 297
             A NL  +I  L ++                + V DF      + ++ D     ++ +E
Sbjct: 261 --AFNLSCKI--LLTTRF--------------KQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 298 HDGLSNVSSPKSMDVHSSPKQAASSENP----VDGASATEDETANSSVKNRANDQFWEQF 353
              L  +           P++  ++ NP    +   S  +                W+  
Sbjct: 303 VKSL--LLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDG-------LATW--DNWKHV 350

Query: 354 LTETPAAAASSSAR----PESRD--------PESGSTYVNKPAEADSKKFWW 393
             +       SS       E R         P S     + P    S   W+
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHIPTILLS-LIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
2dao_A	118	Transcription factor ETV6; ETS domain, structural	92.31
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	91.81
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	90.64
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.61
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	89.49
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	88.9
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	87.86
4avp_A	106	ETS translocation variant 1; transcription, transc	87.45
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	85.98
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	84.1
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	83.54
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.68
1yo5_C	97	SAM pointed domain containing ETS transcription fa	81.27
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	80.98

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=1.2e-39  Score=276.63  Aligned_cols=95  Identities=47%  Similarity=0.840  Sum_probs=91.3

Q ss_pred             CCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC----------
Q 015162           11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID----------   80 (412)
Q Consensus        11 ~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------   80 (412)
                      +++|+||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4678999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCcccccccccccccccccccccc
Q 015162           81 PDQWEFANEEFIRGQRHLLKNIHRR  105 (412)
Q Consensus        81 ~~~~eF~h~~F~Rg~~~lL~~I~Rr  105 (412)
                      ++.|+|+|++|+||+|+||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999996

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=280.21  Aligned_cols=102  Identities=49%  Similarity=0.851  Sum_probs=96.6

Q ss_pred             CCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC------
Q 015162            7 QGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID------   80 (412)
Q Consensus         7 ~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~------   80 (412)
                      -.....+|+||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+||.      
T Consensus        11 ~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~   90 (125)
T 2ldu_A           11 MAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGG   90 (125)
T ss_dssp             CCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSS
T ss_pred             cccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999983      


Q ss_pred             -----CCCcccccccccccccccccccccccCC
Q 015162           81 -----PDQWEFANEEFIRGQRHLLKNIHRRKPV  108 (412)
Q Consensus        81 -----~~~~eF~h~~F~Rg~~~lL~~I~Rr~~~  108 (412)
                           ++.|+|+||+|+||+++||.+|+||+++
T Consensus        91 ~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           91 LVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             SSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             cccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence                 4689999999999999999999999874

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=2.9e-33  Score=235.87  Aligned_cols=84  Identities=44%  Similarity=0.818  Sum_probs=77.9

Q ss_pred             CCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC------
Q 015162            7 QGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID------   80 (412)
Q Consensus         7 ~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~------   80 (412)
                      +.+...+|+|+.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+||||||.      
T Consensus         6 s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~   85 (102)
T 3hts_B            6 SVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGS   85 (102)
T ss_dssp             ----CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC------
T ss_pred             CCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999997      


Q ss_pred             -----CCCccccccc
Q 015162           81 -----PDQWEFANEE   90 (412)
Q Consensus        81 -----~~~~eF~h~~   90 (412)
                           ++.|||+|++
T Consensus        86 ~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           86 MLSNNDSRWEFENER  100 (102)
T ss_dssp             ---CCSCCEEEEECC
T ss_pred             ccCCCcCCeEecCCC
Confidence                 6899999986

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.31  E-value=0.069  Score=45.69  Aligned_cols=80  Identities=16%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             CCCCCCCCchHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc---cc-cccC
Q 015162            7 QGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY---GF-RKID   80 (412)
Q Consensus         7 ~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y---GF-~Kv~   80 (412)
                      +|+.++....-.-|.++|.|+.+.++|+|.. ++.-|.+.|+++.++.--. +-=..-||.-+-|-|..|   |+ +||.
T Consensus         2 ~~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~   81 (118)
T 2dao_A            2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEP   81 (118)
T ss_dssp             CCCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCS
T ss_pred             CCccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEecc
Confidence            4555666677778899999999999999987 5568999999888875222 222456888999999888   43 5555


Q ss_pred             CCCccc
Q 015162           81 PDQWEF   86 (412)
Q Consensus        81 ~~~~eF   86 (412)
                      ..+..|
T Consensus        82 G~r~vY   87 (118)
T 2dao_A           82 GQRLLF   87 (118)
T ss_dssp             SSSSEE
T ss_pred             CCeEEE
Confidence            455444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=91.81  E-value=0.55  Score=37.63  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162          127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC  179 (412)
Q Consensus       127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf  179 (412)
                      +.-+|+.||.++..|..+...++.....+..+.+.|++.+..-+.+.+.|+..
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk   77 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34577777777777777777766666667777777777666555555555544

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=90.64  E-value=0.18  Score=42.47  Aligned_cols=66  Identities=17%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             CCCCCchHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc
Q 015162           10 SNSPAPFLIKTYEMVDDPL-TNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG   75 (412)
Q Consensus        10 ~~~~~~Fl~KLy~mv~d~~-~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG   75 (412)
                      +++......=|.++|.||+ ..+||+|.. +..-|.+.|+++.++.--. +-=..-||..+-|-|..|.
T Consensus         5 ~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   73 (107)
T 1wwx_A            5 SSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY   73 (107)
T ss_dssp             CCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             CCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            3334466677788999886 568999986 5678999999888875221 1113567888888887773

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.61  E-value=0.15  Score=43.14  Aligned_cols=58  Identities=21%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             HHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhcccc-ccCCCCchhhhhcccccc
Q 015162           18 IKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPL-YFKHNNFSSFVRQLNTYG   75 (412)
Q Consensus        18 ~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~YG   75 (412)
                      .=|.++|.||++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   63 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999988899999998887752221 113446777777777763

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=89.49  E-value=0.2  Score=41.52  Aligned_cols=61  Identities=20%  Similarity=0.336  Sum_probs=44.3

Q ss_pred             chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG   75 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG   75 (412)
                      ....=|.++|+|+...++|+|...+.-|.+.|+++.++.--. +-=..-||.-+-|-|..|-
T Consensus         7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            334445677899999999999988889999999888874221 1113557777777777763

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=88.90  E-value=0.21  Score=41.09  Aligned_cols=73  Identities=14%  Similarity=0.341  Sum_probs=52.4

Q ss_pred             chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc---c-cccCCCCcccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG---F-RKIDPDQWEFA   87 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF~   87 (412)
                      ....=|.++|.||+..++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-   + +||...+..|.
T Consensus         6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            455567889999999999999987779999999988875222 1124568888888888773   2 44544444443

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=87.86  E-value=0.3  Score=40.76  Aligned_cols=72  Identities=17%  Similarity=0.332  Sum_probs=50.8

Q ss_pred             chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc---c-cccCCCCccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG---F-RKIDPDQWEF   86 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF   86 (412)
                      ....=|.++|+|+++.++|+|...+.-|.+.|+++.++.--. +-=..-||.-+-|-|..|-   . +||...+..|
T Consensus         9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY   85 (102)
T 2ypr_A            9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY   85 (102)
T ss_dssp             CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred             eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence            345556788999999999999988899999999888874111 1113568888888887773   2 4555444444

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=87.45  E-value=0.23  Score=41.75  Aligned_cols=72  Identities=19%  Similarity=0.424  Sum_probs=52.4

Q ss_pred             chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc---cc-cccCCCCccc
Q 015162           15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY---GF-RKIDPDQWEF   86 (412)
Q Consensus        15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y---GF-~Kv~~~~~eF   86 (412)
                      ....=|.++|+|+++.++|+|...+..|.+.|+++.++.--. +-=..-||..+-|-|..|   |. +||...+..|
T Consensus        13 ~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY   89 (106)
T 4avp_A           13 QLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY   89 (106)
T ss_dssp             CHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred             eHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence            455567888999999999999998889999999888874221 112456888888888777   33 5565555444

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=85.98  E-value=0.38  Score=42.52  Aligned_cols=76  Identities=20%  Similarity=0.312  Sum_probs=54.3

Q ss_pred             CCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccccc----cccCCCCccc
Q 015162           12 SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYGF----RKIDPDQWEF   86 (412)
Q Consensus        12 ~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF   86 (412)
                      +......=|.++|.|+...++|+|...+..|.+.|+++.++.--. +-=..-||.-.-|-|..|-=    +||...+..|
T Consensus        38 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY  117 (146)
T 1gvj_A           38 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY  117 (146)
T ss_dssp             CSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEE
T ss_pred             CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence            344566677889999999999999999999999999998875222 11235578888888887743    3454444444


Q ss_pred             c
Q 015162           87 A   87 (412)
Q Consensus        87 ~   87 (412)
                      .
T Consensus       118 ~  118 (146)
T 1gvj_A          118 R  118 (146)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=84.10  E-value=3.3  Score=33.03  Aligned_cols=45  Identities=27%  Similarity=0.543  Sum_probs=34.7

Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162          124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY  168 (412)
Q Consensus       124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~  168 (412)
                      ++.+.+++.+.|.++..+..+|+..+.+++.|..+|..+++++..
T Consensus        26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee   70 (81)
T 1wt6_A           26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888888888888888888888888777653

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=83.54  E-value=0.51  Score=42.66  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=47.4

Q ss_pred             CchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccccc
Q 015162           14 APFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYGF   76 (412)
Q Consensus        14 ~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF   76 (412)
                      .....=|.++|.|+...++|+|...+.-|.+.|+++.++.--. +-=..-||.-.-|-|..|-=
T Consensus        65 i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~  128 (171)
T 2nny_A           65 IQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYD  128 (171)
T ss_dssp             CCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGT
T ss_pred             eeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Confidence            3455567888999999999999999999999999998875222 11134567888888877743

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.68  E-value=9.5  Score=30.42  Aligned_cols=58  Identities=22%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 015162          125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQS-------VRERLRYLENRQTQMIACLAN  182 (412)
Q Consensus       125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~-------L~erL~~~e~~Qq~mlsfL~~  182 (412)
                      ..++.+|..+=..+..|..|+..|++++..+..+.+.       |.+......+.|...-..|..
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777788888888888888888888877       555555555544444444443

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=81.27  E-value=0.6  Score=38.62  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=46.9

Q ss_pred             CCchHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccccc
Q 015162           13 PAPFLIKTYEMVDDPL-TNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYGF   76 (412)
Q Consensus        13 ~~~Fl~KLy~mv~d~~-~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF   76 (412)
                      ......=|.++|.||+ ..++|+|.. .+.-|.+.|+++.++.--. +-=..-||..+-|-|..|--
T Consensus        10 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~   76 (97)
T 1yo5_C           10 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYK   76 (97)
T ss_dssp             CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTT
T ss_pred             eeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            3356667788999986 589999984 6788999999888875222 22235688888888888854

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=80.98  E-value=6.5  Score=28.66  Aligned_cols=45  Identities=29%  Similarity=0.389  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162          125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL  169 (412)
Q Consensus       125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~  169 (412)
                      +.+..+++.||+++..|..||...-.+...++.+...|++-+...
T Consensus         6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l   50 (54)
T 1deb_A            6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL   50 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            456778999999999999999988888888888888888766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	2e-39
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	3e-32

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  134 bits (339), Expect = 2e-39
 Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 10/105 (9%)

Query: 11  NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQ 70
           +    FL K + +VDD  TN L+ W++ G SF++ N   FAK+LLPL +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 71  LNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
           LN YGF KI          D D+ EF++  F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  115 bits (289), Expect = 3e-32
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 11/89 (12%)

Query: 12 SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQL 71
          +   F+ K + MV+D      + WS SG S +V N   F +++LP YFKH+NF+SFVRQL
Sbjct: 1  ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 72 NTYGFRKI-----------DPDQWEFANE 89
          N YG+ K+           +  +WEF NE
Sbjct: 61 NMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.95
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	91.92
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	91.37
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	91.27
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	89.57
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	89.31
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	88.0
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	84.47

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=2.3e-36  Score=254.29  Aligned_cols=95  Identities=47%  Similarity=0.840  Sum_probs=90.3

Q ss_pred             CCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC----------
Q 015162           11 NSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID----------   80 (412)
Q Consensus        11 ~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~----------   80 (412)
                      +++|+|+.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||+|++|+||+||||+|||+||.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCcccccccccccccccccccccc
Q 015162           81 PDQWEFANEEFIRGQRHLLKNIHRR  105 (412)
Q Consensus        81 ~~~~eF~h~~F~Rg~~~lL~~I~Rr  105 (412)
                      ++.++|+|++|+||+|+||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.95  E-value=2.7e-30  Score=212.23  Aligned_cols=78  Identities=46%  Similarity=0.887  Sum_probs=73.6

Q ss_pred             CCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC-----------C
Q 015162           13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID-----------P   81 (412)
Q Consensus        13 ~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-----------~   81 (412)
                      .|+|+.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+||.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999984           3


Q ss_pred             CCccccccc
Q 015162           82 DQWEFANEE   90 (412)
Q Consensus        82 ~~~eF~h~~   90 (412)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            578999874

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.92  E-value=0.032  Score=45.21  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=42.5

Q ss_pred             HHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc
Q 015162           19 KTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        19 KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y   74 (412)
                      -|.++|.||+..++|+|.+.+.-|.+.|+++.++.--. +-=..-||..+-|-|..|
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyY   62 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYY   62 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGG
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHH
Confidence            36788999999999999998889999999998774211 111345777777777776

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=91.37  E-value=0.025  Score=46.12  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CCchHHHHHHhhcC----CCCCCc--eEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccCC---CC
Q 015162           13 PAPFLIKTYEMVDD----PLTNSL--VSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDP---DQ   83 (412)
Q Consensus        13 ~~~Fl~KLy~mv~d----~~~~~i--I~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---~~   83 (412)
                      -..|..|||.+|.=    |.....  |.|.+++. |.| |...|+..+-=      +-.|.-.-|..|||.++.+   +.
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lLgi------K~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVMGI------KLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHHTC------CHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHHCC------ChhhhcCcccccCceeeecCCCcc
Confidence            45899999999973    332222  79999996 666 78888875322      2355566777899999865   33


Q ss_pred             cccccccccccc
Q 015162           84 WEFANEEFIRGQ   95 (412)
Q Consensus        84 ~eF~h~~F~Rg~   95 (412)
                      +.+.++.|.|.-
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            566899998763

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.051  Score=43.13  Aligned_cols=60  Identities=20%  Similarity=0.342  Sum_probs=43.6

Q ss_pred             hHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc
Q 015162           16 FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG   75 (412)
Q Consensus        16 Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG   75 (412)
                      -..=|.++|.|+++.++|+|...+.-|.+.|+++.++.--- +-=..-||..+-|-|..|-
T Consensus         8 Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           8 LWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            34456778999999999999888788999999988874211 1112347888888777663

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.039  Score=42.84  Aligned_cols=55  Identities=18%  Similarity=0.374  Sum_probs=40.6

Q ss_pred             HHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc
Q 015162           20 TYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        20 Ly~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y   74 (412)
                      |.++|.|+++.++|+|.+ ++.-|.+.|+++.++.=-. +.=..-||..+-|-|..|
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyy   63 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYY   63 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence            456788999999999998 6889999999988874211 111235777777777666

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.31  E-value=0.053  Score=45.64  Aligned_cols=59  Identities=22%  Similarity=0.353  Sum_probs=44.1

Q ss_pred             hHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc
Q 015162           16 FLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        16 Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y   74 (412)
                      .-.-|.++|.|+.+.++|+|...+..|.+.|+++.++.--. +-=..-||..+-|-|..|
T Consensus        42 LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyY  101 (142)
T d1gvja_          42 LWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY  101 (142)
T ss_dssp             HHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHH
Confidence            44557789999999999999988888999999998874111 111245777777777766

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.045  Score=46.82  Aligned_cols=69  Identities=14%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             HHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccc-cccCCCCchhhhhcccccc----ccccCCCCcccc
Q 015162           19 KTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTYG----FRKIDPDQWEFA   87 (412)
Q Consensus        19 KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG----F~Kv~~~~~eF~   87 (412)
                      -|.++|.||.+.++|+|...+.-|.+.|+++.++.--- |.=..-||..+-|-|..|-    .+||...+..|.
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            45678999999999999988889999999999885211 1113467888888887773    244555555554

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.47  E-value=0.095  Score=40.73  Aligned_cols=56  Identities=13%  Similarity=0.187  Sum_probs=37.1

Q ss_pred             HHHHhhcCCCCCCceEEcCCCC-eEEEe--CCchhhhhcc-cc-ccCCCCchhhhhccccc
Q 015162           19 KTYEMVDDPLTNSLVSWSQSGG-SFIVW--NPPDFAKDLL-PL-YFKHNNFSSFVRQLNTY   74 (412)
Q Consensus        19 KLy~mv~d~~~~~iI~W~~~G~-sFiI~--d~~~F~~~vL-p~-~Fkh~nfsSFvRQLN~Y   74 (412)
                      =|.++|.||++.++|+|...+. .|-+.  ++++.++.=- -+ .=..-||..+-|-|..|
T Consensus         7 FL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            3577889999999999977654 35544  5666665311 01 11345888888888776