Citrus Sinensis ID: 015171
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZ15 | 456 | Putative F-box/LRR-repeat | yes | no | 0.507 | 0.458 | 0.298 | 3e-16 | |
| Q9LSJ3 | 465 | Putative F-box/LRR-repeat | no | no | 0.512 | 0.453 | 0.297 | 1e-15 | |
| Q1PE04 | 258 | F-box/LRR-repeat protein | no | no | 0.441 | 0.705 | 0.319 | 2e-14 | |
| Q501G5 | 307 | F-box protein At5g03100 O | no | no | 0.446 | 0.599 | 0.323 | 3e-14 | |
| Q9LV26 | 456 | Putative F-box/LRR-repeat | no | no | 0.436 | 0.394 | 0.318 | 6e-14 | |
| Q9LYZ2 | 469 | Putative F-box/LRR-repeat | no | no | 0.444 | 0.390 | 0.291 | 7e-14 | |
| Q3EA38 | 427 | Putative F-box/FBD/LRR-re | no | no | 0.444 | 0.428 | 0.310 | 9e-14 | |
| Q9C7M1 | 422 | Putative FBD-associated F | no | no | 0.582 | 0.568 | 0.273 | 1e-13 | |
| Q9SMU0 | 443 | Putative F-box/FBD/LRR-re | no | no | 0.429 | 0.399 | 0.321 | 9e-12 | |
| Q84W80 | 481 | F-box/LRR-repeat protein | no | no | 0.451 | 0.386 | 0.305 | 2e-11 |
| >sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 32/241 (13%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV----GGMFTNPRKS 64
D I+ +P+ ILHHILSF+P +T +LS+RW+ VW P +++ G M
Sbjct: 26 ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM------- 78
Query: 65 KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VL 121
+ LTS + I F L +DL + + A+ V+ L V
Sbjct: 79 NQTLTSYTAPI---------ITSFKLVMDL--NSNTVPQVDSWIEFALSRNVQNLSVFVR 127
Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIAS 180
S+ P+I + SL +L+++ P+ V SLR L LR D++I +
Sbjct: 128 DFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHN 187
Query: 181 LISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240
++SGCP++E L + +C LE LDL NL+ + DI + +T V +A H Y
Sbjct: 188 ILSGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYY 241
Query: 241 L 241
L
Sbjct: 242 L 242
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 28/239 (11%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP--DVEVGGMFTNPRKSKE 66
D I+ +P+ ILHHILSF+P +T +LS+RW+ VW P D+++ TN +
Sbjct: 27 ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETN-----Q 81
Query: 67 ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VLVH 123
LTS + I F L +DL + + A+ V+ L V
Sbjct: 82 TLTSYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDF 130
Query: 124 WRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLI 182
++ P+I + SL L+++ P+ V SLR L LR D+++ +++
Sbjct: 131 TYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNIL 190
Query: 183 SGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
SGCP++E L + +C LE LDL NL+ + DI R +T + +A H YL
Sbjct: 191 SGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 15/197 (7%)
Query: 10 DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
D IS LP+ ILHHILSF+P V +T +LSKRW+ VW P + + +P+ + L
Sbjct: 28 DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
S + + S +S E ++S + A+ V L L
Sbjct: 88 ASYTASKITSFHLCTS---YSYEAGHVHS---------SIEFAMSHNVDNLSLAFSSFPP 135
Query: 129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
N P+ + SL +EL L PS V SLR L+L D++ ++SGCP+
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194
Query: 188 IEYLEIRSCEGLESLDL 204
+E L ++ CE L+ LDL
Sbjct: 195 LESLSLKFCESLKYLDL 211
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 1 MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN 60
M R G VD IS+LP+ ILHHIL+ P K +T +LSKRWK VW P + + +
Sbjct: 1 MKRAGG-GVDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVD 59
Query: 61 PRKSKEILTSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKEL 119
P + L+S IK F + + + PE + LA+ + + +
Sbjct: 60 PDSLNKTLSSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLALSRKAENV 106
Query: 120 VL---VHWRSERRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCAD 174
L H+R + F SL L L+ YC L P V SLR L+L
Sbjct: 107 SLRFTSHYR-----FRDTFFINSSLKQLSLTLVYCIL-NPKCVVSWSSLRNLSLNRCKVS 160
Query: 175 DQAIASLISGCPLIEYLEIRSCEGLESLDL 204
D +IA +++GC L+E L + C+ L LDL
Sbjct: 161 DDSIAKILTGCSLLESLTLNLCDRLNDLDL 190
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 18/198 (9%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
VD IS+LP+ IL HILSF+P K T LLSKRW+ VW P + E L
Sbjct: 30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
T + KM+ +F L LIN N + A+ V L L W +
Sbjct: 90 TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137
Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
+ P+ SL L + + S+ + L+KL L D+++A+++ GCP
Sbjct: 138 NKFKFPDFFHINSSLKQLTV----VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193
Query: 187 LIEYLEIRSCEGLESLDL 204
++E L + C GL LDL
Sbjct: 194 ILESLTLDHCGGLRVLDL 211
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
VD IS LP+ +L HI S++P + +T +LSKRW+ VW P + + +P+ + L
Sbjct: 27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86
Query: 69 TSLEPALLNRQRKMISIKKFSLELDL--INSPENASLAGRCLGLAIESEVKELVLVHWR- 125
S + + + ++S E D +NS + A+ V +L L R
Sbjct: 87 ASYTAS---KIKSFHLCTRYSYEADTHHVNS---------SIEFAMSHNVDDLSLAFRRC 134
Query: 126 SERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
S N + + SL +EL Y L P V SL+ L+L + D++ ++SGC
Sbjct: 135 SPFYNFDDCFYTNSSLKRVELRYVDL-MPRCMVSWTSLKNLSLTDCTMSDESFLEILSGC 193
Query: 186 PLIEYLEIRSCEGLESLDL 204
P++E L ++ C L+ L+L
Sbjct: 194 PILESLSLKFCMSLKYLNL 212
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)
Query: 5 GVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKS 64
G++ D IS LPE ++ ILS LP + T +LSK+W+ +W+ P + + +
Sbjct: 9 GIVNADRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFDSL-DQRHEF 67
Query: 65 KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW 124
K +++ ALL+ + ++ + L L NS A L +G+A +++LVL
Sbjct: 68 KTFSKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKL----IGIAFACNLRKLVL-EV 122
Query: 125 RSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLIS 183
R ++PE ++ E+L LEL Y L ++ L SLR L L V D+++ +L+S
Sbjct: 123 DGGRFSIPESLYNCETLDTLELKYSILMDVPSSICLKSLRTLHLHYVDFKDNESALNLLS 182
Query: 184 GCPLIEYLEI 193
GCP +E L +
Sbjct: 183 GCPNLENLVV 192
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7M1|FBD2_ARATH Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana GN=At1g55030 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 31/271 (11%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
D IS LPEP++ IL LP K T +LSK+W+ W+ P +E + L
Sbjct: 8 TDMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFL-----RRLDL 62
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSE 127
++ LL+ + ++ + LD N NA G +G+A+ V++LVL V++
Sbjct: 63 ENVTKCLLSHKAPVLQTFSLKVRLDRRN---NAVDIGCLIGIAMTRNVRKLVLEVYFHRG 119
Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCP 186
P +++ E+L LEL + +V L SL+ L L V DD+++ +L+SGCP
Sbjct: 120 TFTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCP 179
Query: 187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV 246
++ DLV N ++S++K I ++ LAIH P
Sbjct: 180 NLQ-------------DLVMRRN-------SSSNVKTFTIAVPSLQRLAIHNGSGTPQHC 219
Query: 247 NVS-SCGNLKCLKFDFLPIEDEWLCNGISKL 276
+ + +LK LK + + ++ +S+L
Sbjct: 220 GYTINTPSLKYLKLEGSKAFESFMVENVSEL 250
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMU0|FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana GN=At3g49030 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D IS LPE +L ILS +P + V T +LSKRW+ +W+ P++ F +P+ +
Sbjct: 21 DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DPKYHQTFSE 79
Query: 70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW---RS 126
+L +L + + ++ SL+L+ + ++ G + A V++LVLV + R
Sbjct: 80 NLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVLVSFGDVRD 134
Query: 127 ERRNLPEIIF-YVESLHVLEL-SYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLIS 183
+R +F + ++L +LE+ Y L PS V L SLR+L L EV D+A + +L+
Sbjct: 135 KRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDEASVCNLLC 193
Query: 184 GCPLIEYLEI 193
GCP +E L +
Sbjct: 194 GCPSLEVLSV 203
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D IS LP+ IL ILS+LP + +T +LS+RW+ VW + F R +
Sbjct: 37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92
Query: 70 SLEPALLNRQR--KMISIKKFS-LELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
+L+R R KM+S + S I+ P+ + + A+ V+ L L +
Sbjct: 93 R----ILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147
Query: 127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
++ ++PE ++ SL L L + CK P +V SL+ L+L D++IA +
Sbjct: 148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207
Query: 182 ISGCPLIEYLEIRSCEGLESLDL 204
+SGCP++E L + C+ L+ LDL
Sbjct: 208 LSGCPILESLLLFFCKKLKVLDL 230
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| 449476923 | 469 | PREDICTED: putative F-box/FBD/LRR-repeat | 0.890 | 0.782 | 0.369 | 2e-54 | |
| 449458247 | 469 | PREDICTED: putative F-box/FBD/LRR-repeat | 0.890 | 0.782 | 0.369 | 2e-54 | |
| 224121624 | 528 | predicted protein [Populus trichocarpa] | 0.861 | 0.672 | 0.311 | 1e-29 | |
| 147833276 | 521 | hypothetical protein VITISV_011919 [Viti | 0.803 | 0.635 | 0.335 | 8e-29 | |
| 297743071 | 552 | unnamed protein product [Vitis vinifera] | 0.893 | 0.666 | 0.329 | 9e-29 | |
| 225442254 | 520 | PREDICTED: putative F-box protein At3g44 | 0.888 | 0.703 | 0.330 | 1e-28 | |
| 357454743 | 761 | Agglutinin alpha chain [Medicago truncat | 0.771 | 0.417 | 0.300 | 7e-26 | |
| 449458245 | 575 | PREDICTED: uncharacterized protein LOC10 | 0.810 | 0.580 | 0.277 | 1e-25 | |
| 449476919 | 575 | PREDICTED: uncharacterized protein LOC10 | 0.810 | 0.580 | 0.274 | 2e-25 | |
| 224124628 | 524 | f-box family protein [Populus trichocarp | 0.728 | 0.572 | 0.288 | 4e-25 |
| >gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 212/382 (55%), Gaps = 15/382 (3%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
+D IS LP+PIL HILSFL K++ QT +LSKRW +W TFP E F + K
Sbjct: 1 MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60
Query: 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
++ +E L +++ ++KF L D P + + R + +ES V+EL V+
Sbjct: 61 RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115
Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
+R NLP+ +F +SL VL + CKL + KL S++ ++L V A+D+ + L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175
Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
+S CP I+++++ SC GL +L L + L + + N S + K N+ A +
Sbjct: 176 VSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235
Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
P +N+SSC NLK LK + I D+W S+ PLLE L+++ CH L S+RISS LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294
Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
IL C+ + +V+I+TP LS ++ GD+ISFS NA +LS+ + S + N WVV+
Sbjct: 295 KFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353
Query: 362 FEILAMFQKFSKVLNLQCREGE 383
E LA F K L LQ + G+
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGK 374
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 211/382 (55%), Gaps = 15/382 (3%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
+D IS LP+PIL HILSFL K++ QT +LSKRW +W TFP E F + K
Sbjct: 1 MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60
Query: 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
++ +E L +++ ++KF L D P + + R + +ES V+EL V+
Sbjct: 61 RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115
Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
+R NLP+ +F +SL VL + CKL + KL S++ ++L V A+D+ + L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175
Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
+S CP I+++++ SC GL SL L + L + + N S + K N+ A +
Sbjct: 176 VSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235
Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
P +N+SSC NLK LK + I D+W S+ PLLE L+++ CH L S+RISS LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294
Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
IL C+ + +V+I+ P LS ++ GD+ISFS NA +LS+ + S + N WVV+
Sbjct: 295 KFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353
Query: 362 FEILAMFQKFSKVLNLQCREGE 383
E LA F K L LQ + G+
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGK 374
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 203/385 (52%), Gaps = 30/385 (7%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV-----GGMFTNPRK 63
+D IS P+ +LHHILSFLP K+V +T +LSKRWK V T+P ++ G ++
Sbjct: 1 MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60
Query: 64 S-------KEILTS----LEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAI 112
S +++LT ++ ++ + S++KF L L ++ E +S + + I
Sbjct: 61 SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFL-VLPDLELSSHLDKWVQKVI 119
Query: 113 ESEVKELVL-------VHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLR 164
E+ KE+ +H++ + ++P+ IF +S+ VL+L C ++ + S +KL SL+
Sbjct: 120 ENGAKEVDFGIDLPGYLHFK-KPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQ 178
Query: 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKR 223
KLAL+EV DD + +++ CPL+E + +R C GL+ + + L LK+ I + S +
Sbjct: 179 KLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPES 238
Query: 224 VEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281
VEIK+ ++ + T + PI V+V +C LK L + + L + + K +LE
Sbjct: 239 VEIKSPSLESFHCSFTVRSVKPI-VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLES 297
Query: 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341
L + C L V+ISS LK+L + C+ ++ +EI TPNL KY G ++ S
Sbjct: 298 LRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSC 357
Query: 342 ETSLCFSSHLMVNIEWVVEYFEILA 366
+ FS ++I W + E LA
Sbjct: 358 HWQVEFSLMNTLDILWYMTLKEFLA 382
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 189/352 (53%), Gaps = 21/352 (5%)
Query: 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP------ 61
E D IS LP+ IL IL LP K+VA++ LLS+ W+++ MF P
Sbjct: 4 EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFS--SLSLLMFQCPDFLESC 61
Query: 62 RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKE 118
RK+ ++ + +++ +L R K +++ + L LDL + E+ SL + A+E +VKE
Sbjct: 62 RKNTDVSSFINAIDSSLRLRP-KDVNLARLRLHLDL-DDIESESLIDSWIDAALERKVKE 119
Query: 119 LVL-VHWRSERR--NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD 175
L L + RS + LP IF ++ VL L C+L+ ++ L +LRKL LR++ D+
Sbjct: 120 LDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEI-CGDIDLPALRKLCLRQIRCDE 178
Query: 176 QAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA 235
QAI LIS CPLIE L+I SC GL+ L + L+NL + ++ +++R+EI ++ L
Sbjct: 179 QAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLV 238
Query: 236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295
H L P ++ ++ C L+ L I +++L N S P LE L + +L + I
Sbjct: 239 YHCGRL-PCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDST-RLQRIEI 296
Query: 296 SSPCLKTLILECC--DKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSL 345
S LK L L+ K +++I+ PNL F Y G + +S S++ +SL
Sbjct: 297 SHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSMNTSSL 348
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 128/389 (32%), Positives = 200/389 (51%), Gaps = 21/389 (5%)
Query: 4 IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP-- 61
+ V E D IS LP+ IL ILS LP KE+A+T LLSK W+++ F + V MF +P
Sbjct: 32 VMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDF 89
Query: 62 ----RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIES 114
RK+ ++ + +++ +L RQ K +S+ + L L L N E+ SL + A+E
Sbjct: 90 FHSRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALER 147
Query: 115 EVKEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
+VKEL +L E LP IF ++ VL L C+L+ +V L +LRKL LR++
Sbjct: 148 KVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKI 206
Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
D+QAI LIS CPLIE L+I SC L+ L + L+NL +++ +++R+EI ++
Sbjct: 207 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSL 266
Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
+V + L+ L I ++ L N +S +P LE L + +L
Sbjct: 267 QYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQ 325
Query: 292 SVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
+ IS LK L L + + +++I+ PNL F Y G + +S S++ +SL +
Sbjct: 326 RIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAE 385
Query: 350 HLMVNIEWVVEYFEILAMFQKFSKVLNLQ 378
N +F IL + + F K N Q
Sbjct: 386 IHFRNCNDYSHFF-ILQLKEFFEKSKNCQ 413
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 199/387 (51%), Gaps = 21/387 (5%)
Query: 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP---- 61
V E D IS LP+ IL ILS LP KE+A+T LLSK W+++ F + V MF +P
Sbjct: 2 VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDFFH 59
Query: 62 --RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEV 116
RK+ ++ + +++ +L RQ K +S+ + L L L N E+ SL + A+E +V
Sbjct: 60 SRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALERKV 117
Query: 117 KEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173
KEL +L E LP IF ++ VL L C+L+ +V L +LRKL LR++
Sbjct: 118 KELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILC 176
Query: 174 DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNA 233
D+QAI LIS CPLIE L+I SC L+ L + L+NL +++ +++R+EI ++
Sbjct: 177 DEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQY 236
Query: 234 LAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293
+V + L+ L I ++ L N +S +P LE L + +L +
Sbjct: 237 FMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRI 295
Query: 294 RISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHL 351
IS LK L L + + +++I+ PNL F Y G + +S S++ +SL +
Sbjct: 296 EISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAEIH 355
Query: 352 MVNIEWVVEYFEILAMFQKFSKVLNLQ 378
N +F IL + + F K N Q
Sbjct: 356 FRNCNDYSHFF-ILQLKEFFEKSKNCQ 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 28/346 (8%)
Query: 6 VLEVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQTFPDV------EVGGMF 58
V VD IS LP+ +++HILSFL ++ +T LSKRW+ +W ++ + G+
Sbjct: 38 VESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAGIG 97
Query: 59 TNPRKSKE------ILTSLEPALLNRQRKMISIKKFSLEL---DLINSPENASLAGRCLG 109
+KE + SL L N + I+K L + DL ++P L L
Sbjct: 98 PEDGSNKENLFRQHVADSLHTYLANN----LQIQKLLLHMMSFDLTDAP----LVDSWLT 149
Query: 110 LAIESEVKELVL-VHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLA 167
A+ +++E+ L + ++ R LPE++ E+L L LS C L++ N+ L L+KL
Sbjct: 150 SAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR-CGNIMLPRLQKLY 208
Query: 168 LREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK 227
LR+V +Q + +LIS CP IE L C GL+ L ++ +L + + N + +K I
Sbjct: 209 LRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFL-YIHCDSLSRLEIHNCNQLKTAYIF 267
Query: 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287
N++ P +VN+ C +LK L + + ++ N +K PLLE L +
Sbjct: 268 APNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIA 327
Query: 288 HKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISF 333
K+ S+ I + CL+ ++L+ C KL V+I P L F+ G+ + +
Sbjct: 328 DKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)
Query: 9 VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
VD IS LPE +HHILSFL KE A+T +LSK+W+ W++F EVG
Sbjct: 53 VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110
Query: 58 FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
+ ++ ++ + S++ +L + + + I K L + +PE S R + +A E+ +
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166
Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
EL + V +R +P + +++L L L E ++ +L+KL LR + D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225
Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
I L+S CPL+ L I C GL +L + L+ + L ++RVE++ ++
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRVELQVPSLKTFWY 285
Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
++N+ SC +LK L + + + + + P+LE L++++C KL + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345
Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
+ L++L L CC +L +++++ YHG + + L L E + S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)
Query: 9 VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
VD IS LPE +HHILSFL KE A+T +LSK+W+ W++F EVG
Sbjct: 53 VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110
Query: 58 FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
+ ++ ++ + S++ +L + + + I K L + +PE S R + +A E+ +
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166
Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
EL + V +R +P + +++L L L E ++ +L+KL LR + D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225
Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
I L+S CPL+ L I C GL +L + L+ + L ++R+E++ ++
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRIELQVPSLKTFWY 285
Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
++N+ SC +LK L + + + + + P+LE L++++C KL + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345
Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
+ L++L L CC +L +++++ YHG + + L L E + S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 166/340 (48%), Gaps = 40/340 (11%)
Query: 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV---EVGGM----- 57
+ EVD IS LP+PI+ HI+S LP+K+ A+ +LSKR+ W +FP + E M
Sbjct: 16 IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLE 75
Query: 58 FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLA-GRCLGLAIESEV 116
T +K L+ + A L+R+R +S++KFS L NS E + + AIE+ V
Sbjct: 76 LTGKQKLNSFLSYV-GAFLSRRRLDVSLEKFSFCFCLNNSSEQPNGGIENAICYAIENNV 134
Query: 117 KELVLVHWRSERR-----NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
KEL L + +LP + +S+ VL L L+ P
Sbjct: 135 KELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQ---------------- 178
Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
+L+ P I+ L + C+G+++L V+ LK ++L + +++VEI SN+
Sbjct: 179 --------NLVLDFPFIKELRLEKCKGMQTLS-VSSQTLKIVVLESCQRLEKVEIDASNL 229
Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
+ + V++++C +L+ L I DEW+ + +++ LE + C L
Sbjct: 230 ESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVVGCRLLE 289
Query: 292 SVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI 331
+ +S+ LKT+ L C L ++EI + +L+ F Y G L+
Sbjct: 290 NFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLM 329
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| TAIR|locus:2151246 | 258 | AT5G02920 "AT5G02920" [Arabido | 0.519 | 0.829 | 0.3 | 4.4e-17 | |
| TAIR|locus:2143463 | 307 | AT5G03100 "AT5G03100" [Arabido | 0.686 | 0.921 | 0.295 | 9e-16 | |
| TAIR|locus:2151231 | 458 | AT5G02910 "AT5G02910" [Arabido | 0.691 | 0.622 | 0.272 | 4.8e-15 | |
| TAIR|locus:2151316 | 456 | AT5G02700 "AT5G02700" [Arabido | 0.514 | 0.464 | 0.309 | 7.2e-15 | |
| TAIR|locus:2151261 | 469 | AT5G02930 "AT5G02930" [Arabido | 0.526 | 0.462 | 0.282 | 1e-14 | |
| TAIR|locus:2092737 | 456 | AT3G18150 "AT3G18150" [Arabido | 0.638 | 0.576 | 0.288 | 2.7e-14 | |
| TAIR|locus:2088882 | 465 | AT3G28410 "AT3G28410" [Arabido | 0.514 | 0.455 | 0.292 | 4.8e-14 | |
| TAIR|locus:2101308 | 443 | AT3G49030 "AT3G49030" [Arabido | 0.446 | 0.415 | 0.323 | 5.4e-14 | |
| TAIR|locus:2010950 | 422 | AT1G55030 "AT1G55030" [Arabido | 0.487 | 0.476 | 0.303 | 6.1e-14 | |
| TAIR|locus:2099644 | 481 | AT3G03360 [Arabidopsis thalian | 0.689 | 0.590 | 0.259 | 1.5e-13 |
| TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 69/230 (30%), Positives = 105/230 (45%)
Query: 10 DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
D IS LP+ ILHHILSF+P V +T +LSKRW+ VW P + + +P+ + L
Sbjct: 28 DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
S + + S +S E ++S + A+ V L L
Sbjct: 88 ASYTASKITSFHLCTS---YSYEAGHVHSS---------IEFAMSHNVDNLSLAFSSFPP 135
Query: 129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
N P+ + SL +EL L PS V SLR L+L D++ ++SGCP+
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194
Query: 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
+E L ++ CE L+ LDL L + + S R +++ + A IH
Sbjct: 195 LESLSLKFCESLKYLDLSKSLRLTRLEIERRSCF-REPMQSMQIVAPHIH 243
|
|
| TAIR|locus:2143463 AT5G03100 "AT5G03100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 93/315 (29%), Positives = 139/315 (44%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
VD IS+LP+ ILHHIL+ P K +T +LSKRWK VW P + + +P + L
Sbjct: 8 VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67
Query: 69 TSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
+S IK F + + + PE + LA+ S E V + + S
Sbjct: 68 SSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLAL-SRKAENVSLRFTSH 113
Query: 128 RRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
R + F SL L L+ YC L P V SLR L+L D +IA +++GC
Sbjct: 114 YR-FRDTFFINSSLKQLSLTLVYCILN-PKCVVSWSSLRNLSLNRCKVSDDSIAKILTGC 171
Query: 186 PLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFPI 244
L+E L + C+ L LDL +L+ + IL + +R I ++ L + + Y P
Sbjct: 172 SLLESLTLNLCDRLNDLDLSKSLSLRRLEILGDRWTPER--IVAPHIRYLRL-ENYQRPS 228
Query: 245 E-VNVSSC--GNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMTKCHKLTSVRISSPCL 300
V+VSS NL K + D + C L + ++ K + + I L
Sbjct: 229 TLVDVSSLTEANLGLSKH----VLDYFTCEMETESLQYMVRQTVVKLQNIKKLTIGGIFL 284
Query: 301 KTLIL-ECCDKLIQV 314
+ L L E C + V
Sbjct: 285 QILSLAELCGVTLPV 299
|
|
| TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 86/316 (27%), Positives = 140/316 (44%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
+D IS+LP+ ILHHILS +P K +T LLSKRW+ VW P + + +P + L
Sbjct: 10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH--WRS 126
+ I F L L+N + S+ G C+ AI ++L L +R
Sbjct: 70 SFFSAP---------KITSFHLHTTLLNRID--SVNG-CIEFAISHNAEKLSLESRDYRV 117
Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
P+ + S+ L + + P V SL+ L+L D++ ++SG
Sbjct: 118 RNYKFPDFFYTNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGS 177
Query: 186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD--IKRVEIKTSNVNALAIHQTYLFP 243
PL+E LE+ C LDL +L+ + ++ SD + +I +++ L + + L
Sbjct: 178 PLLESLELLYCAEYMCLDLSQSQHLRRLE-IDRSDWFMGPTKIVAPHLHCLRLRHSRLPC 236
Query: 244 IEVNVSSC---------GNLKCLKFDFLP---IEDEWLCNGISKLPLL-EYLSMTKCHKL 290
V+VSS G+LK + FL ++ + + KL + +L M L
Sbjct: 237 SLVDVSSLTEADLNIYFGDLKTVTAGFLQHNVVKMLQMLQNVEKLTIGGTFLQMLSLAAL 296
Query: 291 TSVRISSPCLKTLILE 306
V + +KTL LE
Sbjct: 297 CGVPFPTLKVKTLTLE 312
|
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| TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 73/236 (30%), Positives = 112/236 (47%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D I+ +P+ ILHHILSF+P +T +LS+RW+ VW P +++ + LT
Sbjct: 27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIT---LKHGAMNQTLT 83
Query: 70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
S + I F L +DL NS + A+ V+ L V V S
Sbjct: 84 SYTAPI---------ITSFKLVMDL-NS-NTVPQVDSWIEFALSRNVQNLSVFVRDFTYS 132
Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
+ P+I + SL +L+++ P+ V SLR L LR D++I +++SGC
Sbjct: 133 KTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGC 192
Query: 186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
P++E L + +C LE LDL NL+ + DI + +T V +A H YL
Sbjct: 193 PILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYYL 242
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| TAIR|locus:2151261 AT5G02930 "AT5G02930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 65/230 (28%), Positives = 109/230 (47%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
VD IS LP+ +L HI S++P + +T +LSKRW+ VW P + + +P+ + L
Sbjct: 27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127
S + + + ++S E D + N+S+ A+ V +L L R S
Sbjct: 87 ASYTASKI---KSFHLCTRYSYEADTHHV--NSSIE-----FAMSHNVDDLSLAFRRCSP 136
Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
N + + SL +EL Y L P V SL+ L+L + D++ ++SGCP+
Sbjct: 137 FYNFDDCFYTNSSLKRVELRYVDLM-PRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPI 195
Query: 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
+E L ++ C L+ L+L L + + S I R + + + A IH
Sbjct: 196 LESLSLKFCMSLKYLNLSKSLRLTRLEIERISYI-RAPMLSMQIVAPYIH 244
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| TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 84/291 (28%), Positives = 134/291 (46%)
Query: 9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
VD IS+LP+ IL HILSF+P K T LLSKRW+ VW P + E L
Sbjct: 30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
T + KM+ +F L LIN N + A+ V L L W +
Sbjct: 90 TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137
Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
+ P+ F++ S + +L+ + S+ + L+KL L D+++A+++ GCP
Sbjct: 138 NKFKFPDF-FHINS-SLKQLTV--VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193
Query: 187 LIEYLEIRSCEGLESLDLVNLSNLKEI-ILVN--TSDIKRVEIKTSNVNALAIHQTYLFP 243
++E L + C GL LDL L+ + I N ++ ++I + + L + + L
Sbjct: 194 ILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLPC 253
Query: 244 IEVNVSSCGNLK---CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
V+VSS K C+ I+ ++L ++ L +LE L + KLT
Sbjct: 254 SLVDVSSLKEAKLNICIDSFSKTIKADFL--QVTLLKMLEKLHNVE--KLT 300
|
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| TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 69/236 (29%), Positives = 112/236 (47%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D I+ +P+ ILHHILSF+P +T +LS+RW+ VW P +++ ++ + LT
Sbjct: 28 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIK---LKHGETNQTLT 84
Query: 70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
S + I F L +DL + + A+ V+ L V V +
Sbjct: 85 SYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYT 133
Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
+ P+I + SL L+++ P+ V SLR L LR D+++ +++SGC
Sbjct: 134 KTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGC 193
Query: 186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
P++E L + +C LE LDL NL+ + DI R +T + +A H YL
Sbjct: 194 PILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243
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| TAIR|locus:2101308 AT3G49030 "AT3G49030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 64/198 (32%), Positives = 106/198 (53%)
Query: 2 MRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP 61
+R V E D IS LPE +L ILS +P + V T +LSKRW+ +W+ P++ F +P
Sbjct: 14 IRDAVKE-DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DP 71
Query: 62 RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL 121
+ + +L +L + + ++ SL+L+ + ++ G + A V++LVL
Sbjct: 72 KYHQTFSENLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVL 126
Query: 122 VHW---RSERRNLPEIIF-YVESLHVLELS-YCKLQQPSENVKLFSLRKLALREVCADDQ 176
V + R +R +F + ++L +LE+ Y L PS V L SLR+L L EV D+
Sbjct: 127 VSFGDVRDKRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDE 185
Query: 177 A-IASLISGCPLIEYLEI 193
A + +L+ GCP +E L +
Sbjct: 186 ASVCNLLCGCPSLEVLSV 203
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| TAIR|locus:2010950 AT1G55030 "AT1G55030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 65/214 (30%), Positives = 112/214 (52%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D IS LPEP++ IL LP K T +LSK+W+ W+ P +E R E +T
Sbjct: 9 DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLR--RLDLENVT 66
Query: 70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
LL+ + ++ + FSL++ L + NA G +G+A+ V++LVL V++
Sbjct: 67 K---CLLSHKAPVL--QTFSLKVRL-DRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120
Query: 129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
P +++ E+L LEL + +V L SL+ L L V DD+++ +L+SGCP
Sbjct: 121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180
Query: 188 IEYLEIR--SCEGLESLDLVNLSNLKEIILVNTS 219
++ L +R S +++ + + +L+ + + N S
Sbjct: 181 LQDLVMRRNSSSNVKTFTIA-VPSLQRLAIHNGS 213
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| TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 79/304 (25%), Positives = 138/304 (45%)
Query: 10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
D IS LP+ IL ILS+LP + +T +LS+RW+ VW + F R +
Sbjct: 37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92
Query: 70 SLEPALLNRQR--KMISIKKFSL-ELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
+ L+R R KM+S + S I+ P+ + + A+ V+ L L +
Sbjct: 93 RI----LDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147
Query: 127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
++ ++PE ++ SL L L + CK P +V SL+ L+L D++IA +
Sbjct: 148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207
Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
+SGCP++E L + C+ L+ LDL L + + ++ ++ ++ L + +
Sbjct: 208 LSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAPHIRCLRLINSEK 267
Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
V+VSS + L I D L + +++ L KC + + + + LK
Sbjct: 268 PCALVDVSSLSQAE-LDITAYAIVDNKLEADFHQTMVVKMLE--KCQNVEKLTLGANFLK 324
Query: 302 TLIL 305
L L
Sbjct: 325 MLSL 328
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_1460040 | hypothetical protein (528 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 412 | |||
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 9e-05 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 4e-04 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP 50
+ LP+ +L ILS L K++ + L+SKRW+ + +
Sbjct: 3 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41
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This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
+S LP+ IL I S+L +++ + L+ +RW+++
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34
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This is an F-box-like family. Length = 47 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.7 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.49 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.4 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.3 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.25 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.02 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.97 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.89 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.87 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.86 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.84 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.74 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.74 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.57 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.52 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.51 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.46 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.46 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.43 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.38 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.34 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.31 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.3 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.19 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.1 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.09 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.04 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.99 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.98 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.87 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.65 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.42 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.38 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.37 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.18 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 97.14 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.11 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.01 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 96.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.78 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.72 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.65 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 96.46 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.46 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.45 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.3 | |
| PF07723 | 26 | LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le | 96.08 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.03 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.93 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.9 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.68 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.56 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.36 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.27 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 95.24 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.17 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.09 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.98 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 94.77 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 94.42 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.56 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 93.27 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 90.51 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 90.2 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 90.01 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 88.81 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 87.89 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 87.06 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 87.02 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 85.37 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 84.12 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 83.08 |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-19 Score=157.52 Aligned_cols=264 Identities=20% Similarity=0.228 Sum_probs=148.3
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCee-eeecccCCCchhhHHHHHHHHHHhccccCCCCceeEEE
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV-EVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSL 90 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~l-~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~l~l 90 (412)
+..||||++..||+.|+.+|+.+.+.|||||+++-+.-... ..| ....... .....+.+ .+++..+++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD--l~~r~i~---p~~l~~l~------~rgV~v~Rl 166 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD--LTGRNIH---PDVLGRLL------SRGVIVFRL 166 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec--cCCCccC---hhHHHHHH------hCCeEEEEc
Confidence 67899999999999999999999999999999764332221 112 1111011 12222222 123444433
Q ss_pred EEecCCCCCChhhHHHHHH--HHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCccccee
Q 015171 91 ELDLINSPENASLAGRCLG--LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL 166 (412)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~--~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L 166 (412)
--.-. .++ +... ..+..+++.++++......-.+--.+..|..|+.|.|.+..++++ ...+.-.+|+.|
T Consensus 167 ar~~~---~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 167 ARSFM---DQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred chhhh---cCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 21100 111 1111 122235777777764443334444455666777777776666555 333444566666
Q ss_pred EeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCccee---eccC-CCCccEEEEeeC-CCCceEEEecCcccEEEeeeee
Q 015171 167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY 240 (412)
Q Consensus 167 ~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~-l~~L~~L~i~~c-~~l~~~~~~~p~L~~L~l~~~~ 240 (412)
+|+.+.- +..+++.++++|..|.+|.|+.|...... .+.+ -++|+.|++++| .++.
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------------------ 301 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------------------ 301 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------------------
Confidence 7766655 66666666666777777766666543221 1111 145555555544 1110
Q ss_pred ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccc--cc--ccccccceEEEecCccc
Q 015171 241 LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDKL 311 (412)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~--~~~~~L~~L~l~~c~~l 311 (412)
...+......||+|.+|+|+.+..........+..|+.|++|.++.|..+.. +. ...|.|.+|++.+|-..
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 0011122356888888888766543334445567789999999999866532 11 25578888888887654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-19 Score=163.06 Aligned_cols=319 Identities=18% Similarity=0.210 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHccCChHHHHHHhhhhhchhhh------cccCCeeeeecccCCCchhhHHHHHHHHHHhccccCCCCcee
Q 015171 14 TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (412)
Q Consensus 14 ~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~ 87 (412)
.||.|++.+|||+|+.+.+.|++++|+-|..+ |..+....|..+..+ .+|...+ ++.+..++.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcgg~lk~ 142 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCGGFLKE 142 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhcccccc
Confidence 59999999999999999999999999999875 555544444432221 2233323 122356666
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC----CCCccCcc
Q 015171 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFS 162 (412)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~ 162 (412)
++++.... .....+.. .....++++.|.+.++.. ++..+-.....|+.|++|++..|...+. .....|++
T Consensus 143 LSlrG~r~---v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 143 LSLRGCRA---VGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccc---CCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 66664432 11111111 112234666666665431 1111222223466677777666543322 23446677
Q ss_pred cceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceee---cc-CCCCccEEEEeeCCCCceEE-----EecCccc
Q 015171 163 LRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD---LV-NLSNLKEIILVNTSDIKRVE-----IKTSNVN 232 (412)
Q Consensus 163 L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~-~l~~L~~L~i~~c~~l~~~~-----~~~p~L~ 232 (412)
|++|++++|.- ...+++.+..+|..++++.+++|...+.-. +. .++-+.++++..|..++... -.+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777776665 555666666666666666666665432110 00 12334444444442222221 1244555
Q ss_pred EEEeeeeeccc---eEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEeccccccc-----ccccccccccceE
Q 015171 233 ALAIHQTYLFP---IEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKL-----TSVRISSPCLKTL 303 (412)
Q Consensus 233 ~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l-----~~l~~~~~~L~~L 303 (412)
.+.++++.+.+ ......++++|+.|.+..+. +++..+..+..+++.|+.+++.+|... ..+...++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 66555554211 11112455666666665443 444445555556666666666655322 2233355666666
Q ss_pred EEecCccccee--------eccCCCeeeEEEeccee------eecccccccceEEEEEe
Q 015171 304 ILECCDKLIQV--------EIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 304 ~l~~c~~l~~~--------~~~~~~L~~l~~~~~~~------~~l~~~~~L~~l~i~~~ 348 (412)
.+++|..+.+. ..+...|+.+++.+++. ..+..+++||.+.+...
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 66666554211 11223455555555544 34445667777666544
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-14 Score=151.37 Aligned_cols=211 Identities=23% Similarity=0.233 Sum_probs=111.2
Q ss_pred ccCCCCeeEEEEecee-ecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeecc-CCCCccE
Q 015171 135 IFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKE 212 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~l~~L~~ 212 (412)
+..+++|+.|+|+++. +...+....+++|++|+|.+|..- ..+..-+..+++|+.|++++|..+..+... .+++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3344444444444432 111133344455555555544321 111122344555555555555544333211 2455666
Q ss_pred EEEeeCCCCceEEEecCcccEEEeeeeeccceEEe------------------------------ccCCCCCcEEEeecc
Q 015171 213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVN------------------------------VSSCGNLKCLKFDFL 262 (412)
Q Consensus 213 L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~L~~L~l~~~ 262 (412)
|++++|..+..++...++|+.|++.++....++.. ...+++|+.|+++++
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 66666644444433334555555554431111110 011245666666655
Q ss_pred ccchHHHHHhhcCCCCccEEecccccccccccc--cccccceEEEecCcccceeeccCCCeeeEEEeccee----eeccc
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSN 336 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~----~~l~~ 336 (412)
..... ++..+.++++|+.|++.+|..++.++. .+++|+.|++++|..+..++...++|+.|.+.+... ..+.+
T Consensus 789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 43322 333456788888888888887777765 457888888888888766655556777777766543 34556
Q ss_pred ccccceEEEEE
Q 015171 337 ALSLSETSLCF 347 (412)
Q Consensus 337 ~~~L~~l~i~~ 347 (412)
+++|+.|.+..
T Consensus 868 l~~L~~L~L~~ 878 (1153)
T PLN03210 868 FSNLSFLDMNG 878 (1153)
T ss_pred CCCCCEEECCC
Confidence 77777777744
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-13 Score=143.44 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=142.7
Q ss_pred hCCceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
.++++.|+++.+.. ...+|..++ .+++|++|+++++.+........+++|++|+|+++.++... ...+.++++|++|
T Consensus 92 l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCEE
Confidence 35888888886432 235777666 78899999999887765444466888999999888774322 2235678888888
Q ss_pred EeeccCCccee--eccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccc
Q 015171 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 192 ~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
++++|.....+ .+..+++|+.|++++|.-...++ ...++|+.|+++++. ....+..++.+++|++|+++++.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 88887643222 34456788888887773221121 245677777777665 2233445667777777777777665
Q ss_pred hHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee---ccCCCeeeEEEeccee-----eec
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFS 334 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~~l 334 (412)
.. ++..+..+++|+.|+++++.....++. ..++|++|++++|.....++ ...++|+.+.+.++.. ..+
T Consensus 250 ~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 250 GP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred cc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 43 233355667777777776543333322 34566777776665432222 2345566666554432 234
Q ss_pred ccccccceEEEEEe
Q 015171 335 SNALSLSETSLCFS 348 (412)
Q Consensus 335 ~~~~~L~~l~i~~~ 348 (412)
.++++|+.|.+..+
T Consensus 329 ~~l~~L~~L~L~~n 342 (968)
T PLN00113 329 TSLPRLQVLQLWSN 342 (968)
T ss_pred hcCCCCCEEECcCC
Confidence 45566666666443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=136.78 Aligned_cols=155 Identities=21% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCccccCCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccC
Q 015171 131 LPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVN 206 (412)
Q Consensus 131 lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~ 206 (412)
+|..+.++++|++|++++|.+.. +.....+++|++|+++++.+.... ..-+..+++|+.|++++|.....+ .+..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 33344444455555554443321 122334444444444444332111 111234444444444444322111 1223
Q ss_pred CCCccEEEEeeCCC---CceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 207 LSNLKEIILVNTSD---IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 207 l~~L~~L~i~~c~~---l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+++|+.|++++|.- +......+++|++|.++++. ....+..+..+++|++|+++++.+... ++..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEE
Confidence 44555555544411 10001123444555544443 112222333444555555544443322 22223344445555
Q ss_pred ecccc
Q 015171 283 SMTKC 287 (412)
Q Consensus 283 ~l~~c 287 (412)
++.++
T Consensus 314 ~l~~n 318 (968)
T PLN00113 314 HLFSN 318 (968)
T ss_pred ECCCC
Confidence 55443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-11 Score=132.59 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=133.7
Q ss_pred CCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
...+|++|++.++.+..- .....+++|+.|+|+++..- ..+.. ++.+++|+.|++++|..+..+ .+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 456788888877765432 34567888888888876431 11112 456889999999988776543 34557889999
Q ss_pred EEeeCCCCceEEE--ecCcccEEEeeeeeccceEEec-cCCCCCcEEEeeccccchHHHHH-------------------
Q 015171 214 ILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCN------------------- 271 (412)
Q Consensus 214 ~i~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~------------------- 271 (412)
++++|..+..++. ..++|+.|.+++|.... .+ ...++|+.|+++++.+.. ++.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~---~~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLK---SFPDISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc---ccccccCCcCeeecCCCcccc--ccccccccccccccccccchhh
Confidence 9999877666653 57789999998876211 11 123577788887665432 111
Q ss_pred -----------hhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeec--cCCCeeeEEEeccee--ee
Q 015171 272 -----------GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDLI--SF 333 (412)
Q Consensus 272 -----------~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~~~L~~l~~~~~~~--~~ 333 (412)
....+++|+.|++++|+.+..++. .+++|+.|+|++|..+..++. ..++|+.|.+.++.. .+
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 011235778888887766666554 567889999999988766553 456788888877654 22
Q ss_pred cccccccceEEEEEe
Q 015171 334 SSNALSLSETSLCFS 348 (412)
Q Consensus 334 l~~~~~L~~l~i~~~ 348 (412)
-....+|+.|.+..+
T Consensus 842 p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 842 PDISTNISDLNLSRT 856 (1153)
T ss_pred cccccccCEeECCCC
Confidence 223457888887544
|
syringae 6; Provisional |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-11 Score=111.54 Aligned_cols=268 Identities=18% Similarity=0.220 Sum_probs=178.6
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEe-C
Q 015171 101 ASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-D 174 (412)
Q Consensus 101 ~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~ 174 (412)
...+...+..+- ..+++|.+.++.. ....+-....+|+++++|++.+|...+. .....|++|+.|++..|.. +
T Consensus 126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred CcceehHhhhhc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 334444343322 5799999998654 3334444566799999999999975433 4456799999999999766 8
Q ss_pred HHHHHHHHcCCCCccEEEeeccCCcceee----ccCCCCccEEEEeeCCCCc-----eEEEecCcccEEEeeeee---cc
Q 015171 175 DQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTY---LF 242 (412)
Q Consensus 175 ~~~l~~l~~~~p~Le~L~l~~c~~~~~~~----i~~l~~L~~L~i~~c~~l~-----~~~~~~p~L~~L~l~~~~---~~ 242 (412)
+..+..+..+||+|++|.++.|+.+..-. ..++..++.+...+|.... .+.-.++-+.++++..|. +.
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 88899899999999999999998775422 2345667778777883322 222234445555544554 11
Q ss_pred ceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccccccccc-----cccccccceEEEecCccc-----
Q 015171 243 PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSV-----RISSPCLKTLILECCDKL----- 311 (412)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~L~~L~l~~c~~l----- 311 (412)
.....-..+..|+.|+.+++. +.+..+..+..++++|+.|.+.+|...++. ..+++.|+.+++..|...
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 111122357788999997654 556677778889999999999999866543 447899999999998764
Q ss_pred ceeeccCCCeeeEEEeccee----------eecccccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 312 IQVEIETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 312 ~~~~~~~~~L~~l~~~~~~~----------~~l~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
......+|.|+.+.+.-+.. .+-.....|+.+.++.... -.+...+.+.+-..+++..
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~---i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL---ITDATLEHLSICRNLERIE 432 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC---chHHHHHHHhhCcccceee
Confidence 34556788888887763322 1223355677777755522 2344555666666666644
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-10 Score=110.61 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=123.5
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+-++.|+++..... ++|.. +..-.++++|+|+++.+... ..+..+.+|.+|.|+.++++.-. ...+.+.|.|+.
T Consensus 149 ~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence 35667777653322 33322 22346777888877766443 44556667777777777663211 223455677777
Q ss_pred EEeeccCC--cceeeccCCCCccEEEEeeC-------------CCCceEE--------------EecCcccEEEeeeeec
Q 015171 191 LEIRSCEG--LESLDLVNLSNLKEIILVNT-------------SDIKRVE--------------IKTSNVNALAIHQTYL 241 (412)
Q Consensus 191 L~l~~c~~--~~~~~i~~l~~L~~L~i~~c-------------~~l~~~~--------------~~~p~L~~L~l~~~~~ 241 (412)
|+|..+.. .+.+.+.++++|+.|.+... .+++.+. .....|+.|+++.+..
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 77766532 12334444555555554433 1111111 1234566666666552
Q ss_pred cceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccc----
Q 015171 242 FPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---- 312 (412)
Q Consensus 242 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~---- 312 (412)
..+. ...+.+++|++|+|+++.+..-. .+-+..+..|+.|.++.. .+..+.. +..+|+.|++.+.....
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred heeecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 2222 23456788888888887765421 112334556777777652 2222222 44566777666543321
Q ss_pred --eeeccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 313 --QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 313 --~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
....++|.|++|.+.|.+. ..+..+.+|++|++..+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 1113456777777777665 45556667777777554
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-09 Score=70.14 Aligned_cols=35 Identities=34% Similarity=0.746 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
|+.||+|++.+||+||+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-10 Score=104.30 Aligned_cols=194 Identities=19% Similarity=0.185 Sum_probs=111.5
Q ss_pred CceEEEEEeCCCc---cccCCccccCCCCeeEEEEeceeecC--C------CCCccCcccceeEeeeEEeCH---HHHHH
Q 015171 115 EVKELVLVHWRSE---RRNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIAS 180 (412)
Q Consensus 115 ~l~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~--~------~~~~~l~~L~~L~L~~~~~~~---~~l~~ 180 (412)
+++++++..+... ...++..+...++|++|+++++.+.. . .....+++|+.|+++++.+.. ..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5888888875432 22345556667788999888876542 1 223457788899988887742 23444
Q ss_pred HHcCCCCccEEEeeccCCcc----ee--eccCC-CCccEEEEeeCCCC----ceEE---EecCcccEEEeeeeecc--c-
Q 015171 181 LISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDI----KRVE---IKTSNVNALAIHQTYLF--P- 243 (412)
Q Consensus 181 l~~~~p~Le~L~l~~c~~~~----~~--~i~~l-~~L~~L~i~~c~~l----~~~~---~~~p~L~~L~l~~~~~~--~- 243 (412)
+..+ ++|++|++++|.... .+ .+..+ ++|+.|++.+|.-- ..+. ..+++|++|+++++... .
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4445 678899888886431 00 12334 77888888877211 1111 12356777777666511 0
Q ss_pred --eEEeccCCCCCcEEEeeccccchHH---HHHhhcCCCCccEEecccccccc----cccc----cccccceEEEecCc
Q 015171 244 --IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 244 --~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~----~l~~----~~~~L~~L~l~~c~ 309 (412)
+...+..+++|++|+++++.+.+.. +...+..+++|+.|++++|.... .+.. ..+.|++|++++|.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1112334457777777777665432 23344556777777777753211 1111 12567777776664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-10 Score=106.01 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=135.7
Q ss_pred cCCCCeeEEEEeceeecCCC---CCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcc---eeeccCCC
Q 015171 136 FYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLS 208 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~---~~~i~~l~ 208 (412)
.+.++|+...|.++....++ ....||+++.|+|+++-+ ....+..++..+|+||.|.++.+...- ......++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34678888999988776553 577899999999999988 777888999999999999999886442 11222468
Q ss_pred CccEEEEeeC----CCCceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEe
Q 015171 209 NLKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (412)
Q Consensus 209 ~L~~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (412)
+|+.|.+++| ..+..+...+|+|+.|.+.++. ..........+..|++|+|+++.+.+.........+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 9999999999 2333455679999999998885 1111223345788999999988877643334467899999999
Q ss_pred cccc--cccccc-------cccccccceEEEecCccc--ceee--ccCCCeeeEEEec
Q 015171 284 MTKC--HKLTSV-------RISSPCLKTLILECCDKL--IQVE--IETPNLSIFKYHG 328 (412)
Q Consensus 284 l~~c--~~l~~l-------~~~~~~L~~L~l~~c~~l--~~~~--~~~~~L~~l~~~~ 328 (412)
++.| +.+... ...+|+|++|++...+.. .++. -..++|+.+.+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 9875 222111 126789999998876652 1221 2334555555433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-10 Score=106.95 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=130.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
+++.|++......... ...+...+.|+.|+|+.+.+... +.+..-.++++|+|.++.+++-.... +.++.+|-.|.
T Consensus 126 hl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlk 203 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLK 203 (873)
T ss_pred ceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeee
Confidence 6999998874322111 11234468899999999876543 44445578999999999995544443 34566899999
Q ss_pred eeccCCcc--eeeccCCCCccEEEEeeCCCCce---EEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccc
Q 015171 193 IRSCEGLE--SLDLVNLSNLKEIILVNTSDIKR---VEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 193 l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~---~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 265 (412)
|+.+.... ...+..+|+|+.|++... .++. +.. ..|+|+.|.+..+..... .-.|-.+.++++|+|..+.+.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 99886532 122334789999998765 2221 122 467788887766551110 012344667777777666554
Q ss_pred hHHHHHhhcCCCCccEEecccccccccc----cccccccceEEEecCcc--------------------------c-cee
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILECCDK--------------------------L-IQV 314 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~L~~L~l~~c~~--------------------------l-~~~ 314 (412)
.-. .+.+.++..|+.|+++.. .+..+ |..+++|+.|++++... + +..
T Consensus 283 ~vn-~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 283 AVN-EGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhh-cccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 421 223344555566655542 11111 22344555555544322 1 111
Q ss_pred eccCCCeeeEEEeccee--------eecccccccceEEEEEe
Q 015171 315 EIETPNLSIFKYHGDLI--------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 315 ~~~~~~L~~l~~~~~~~--------~~l~~~~~L~~l~i~~~ 348 (412)
.....+|+.|.+..... -.+..+++|++|.+.++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 23345666666655433 34445788888888766
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-09 Score=96.04 Aligned_cols=166 Identities=19% Similarity=0.291 Sum_probs=91.0
Q ss_pred cceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEE-----ecCcccEEE
Q 015171 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALA 235 (412)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~ 235 (412)
|+.|+|+...++...+..+++.|..|+.|.|++..--+.+ .|..=.+|+.|+++.|+++.+... +|..|..|.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555544444555555555555555555544332222 111114455555555544443321 445555556
Q ss_pred eeeeeccc--eEEeccC-CCCCcEEEeeccc--cchHHHHHhhcCCCCccEEecccccccccc----cccccccceEEEe
Q 015171 236 IHQTYLFP--IEVNVSS-CGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILE 306 (412)
Q Consensus 236 l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~L~~L~l~ 306 (412)
+++|.... +.+.+.+ -++|+.|+++|+. +....+..+...||+|.+|++++|..++.- ...++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 65555111 1111111 2567777776543 223345667788999999999998766552 2267899999999
Q ss_pred cCcccce---e-eccCCCeeeEEEec
Q 015171 307 CCDKLIQ---V-EIETPNLSIFKYHG 328 (412)
Q Consensus 307 ~c~~l~~---~-~~~~~~L~~l~~~~ 328 (412)
.|..+.. + ..+.|.|..|++.|
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecc
Confidence 9998731 1 12445555555544
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-09 Score=100.81 Aligned_cols=196 Identities=21% Similarity=0.132 Sum_probs=111.4
Q ss_pred CceEEEEEeCCCc-----cccCCccccCCCCeeEEEEeceeecCC--CCCccC---cccceeEeeeEEeCHHHHHH---H
Q 015171 115 EVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS---L 181 (412)
Q Consensus 115 ~l~~L~l~~~~~~-----~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l---~~L~~L~L~~~~~~~~~l~~---l 181 (412)
+++++.+...... ...++..+..+++|++|++++|.+... .....+ ++|+.|+++++.+++..... .
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4666666553221 011223344566777777777766422 112222 44888888877775443332 2
Q ss_pred HcCC-CCccEEEeeccCCcce----e--eccCCCCccEEEEeeCCC----CceEE---EecCcccEEEeeeeecc-----
Q 015171 182 ISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSD----IKRVE---IKTSNVNALAIHQTYLF----- 242 (412)
Q Consensus 182 ~~~~-p~Le~L~l~~c~~~~~----~--~i~~l~~L~~L~i~~c~~----l~~~~---~~~p~L~~L~l~~~~~~----- 242 (412)
+..+ ++|++|++++|..... + .+..+++|+.|++.+|.- +..+. ...++|+.|+++++...
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3444 7778888887764311 1 122346788888777611 11111 12357888888777521
Q ss_pred ceEEeccCCCCCcEEEeeccccchHHHHHhhcC----CCCccEEeccccccc----cccc---ccccccceEEEecCcc
Q 015171 243 PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSVR---ISSPCLKTLILECCDK 310 (412)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l----~~l~---~~~~~L~~L~l~~c~~ 310 (412)
.+...+..+++|++|+++++.+.+..+..+... .+.|++|++.+|... ..+. ...++|+.++++++..
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 112235567889999998888877555544433 378999999887432 1111 1336778888877654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-09 Score=95.13 Aligned_cols=172 Identities=22% Similarity=0.157 Sum_probs=100.5
Q ss_pred CCceEEEEEeCC-CccccCCccccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++..- .....+-..+..+++|+.|+|+.+.+..+ .....+++||.|.|++|.++...+..++..||+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 367777766521 11112222334567888888888766544 33346788888888888888888888888888888
Q ss_pred EEEeeccCCccee--eccCCCCccEEEEeeCCCC--ceE--EEecCcccEEEeeeeeccce-------EEeccCCCCCcE
Q 015171 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDI--KRV--EIKTSNVNALAIHQTYLFPI-------EVNVSSCGNLKC 256 (412)
Q Consensus 190 ~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l--~~~--~~~~p~L~~L~l~~~~~~~~-------~~~~~~~~~L~~ 256 (412)
.|.+..+...... ...-+..|+.|++++..-+ ..+ .-..|.|+.|.++.+...++ ......+++|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 8888887533211 1111467888888776221 111 22566777776666551111 111234677777
Q ss_pred EEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 257 LKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
|++..+++.+.....-+..+++|+.|.+.
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred eecccCccccccccchhhccchhhhhhcc
Confidence 77776666442222224445666666544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=95.66 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=36.3
Q ss_pred CccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEeccee----eecccccccceEEEEEe
Q 015171 278 LLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~ 348 (412)
+|+.|+++++ .++.++..+++|+.|+++++. +..++....+|+.|.+.++.. ..+.++++|+.+.++.+
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ccceEEecCC-cccCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 5666666553 334444444566666666654 223332223455555544333 23445667777777655
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=91.82 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=92.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+-..|+++.. ....+|..+. ++|+.|.+.++.+...+ ...++|++|++++|.++. +. ...++|++|++.
T Consensus 202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Ccccccceeecc
Confidence 4555666553 2335676554 36788888877665322 235778888887776631 11 123567777776
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE----------------eccCC-CCCcEE
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----------------NVSSC-GNLKCL 257 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~----------------~~~~~-~~L~~L 257 (412)
+|... .+.- ...+|+.|.+.++ .+..++...|+|+.|+++++....++. .++.+ ++|+.|
T Consensus 271 ~N~L~-~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~L 347 (788)
T PRK15387 271 SNPLT-HLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQEL 347 (788)
T ss_pred CCchh-hhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceE
Confidence 66421 1110 1134555555554 233333334556666665554111100 01111 245555
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEecc
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGD 329 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~ 329 (412)
++++|.+.. ++. ..++|+.|+++++ .+..++..+.+|+.|+++++. +..++...++|+.|.+.++
T Consensus 348 dLS~N~Ls~--LP~---lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 348 SVSDNQLAS--LPT---LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN 412 (788)
T ss_pred ecCCCccCC--CCC---CCcccceehhhcc-ccccCcccccccceEEecCCc-ccCCCCcccCCCEEEccCC
Confidence 555554443 111 1234555555442 233344344456666665543 2233333345555555554
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-08 Score=63.39 Aligned_cols=37 Identities=41% Similarity=0.762 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
++.||+|++.+||++|+.+|+++++.|||+|+.+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-08 Score=90.13 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=112.3
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhC--CceEEEEEeC--CCccccCCccccCCCCeeEEEEeceeecCCCCCc
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIES--EVKELVLVHW--RSERRNLPEIIFYVESLHVLELSYCKLQQPSENV 158 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~--~l~~L~l~~~--~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~ 158 (412)
..+.++.++.. +-.....+|+....+. .+++.+++.- .....++|..+..+ .....
T Consensus 30 ~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~aL~ 89 (382)
T KOG1909|consen 30 DSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKALL 89 (382)
T ss_pred CceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHHHh
Confidence 45566655533 3355566777665553 5566655541 11222333321100 02344
Q ss_pred cCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccCCcc----e-----------eeccCCCCccEEEEeeC--
Q 015171 159 KLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLE----S-----------LDLVNLSNLKEIILVNT-- 218 (412)
Q Consensus 159 ~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~----~-----------~~i~~l~~L~~L~i~~c-- 218 (412)
.+|.|++|+|+++.+ ....+..++++|..|++|.+.+|.--. . -.+.+-+.|+.+....+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 566777777777777 345677888889999999998884321 0 01222356666655544
Q ss_pred C--CCce---EEEecCcccEEEeeeeeccce-----EEeccCCCCCcEEEeeccccchH---HHHHhhcCCCCccEEecc
Q 015171 219 S--DIKR---VEIKTSNVNALAIHQTYLFPI-----EVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 219 ~--~l~~---~~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~ 285 (412)
. +-.. .....|.|+.+.+..+...+- ...+..||+|+.|++..|.++.. .+...++.+|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 0 0000 111346677777766552221 12345677777777777666542 334445666777777777
Q ss_pred ccccc--------ccccccccccceEEEecCcc
Q 015171 286 KCHKL--------TSVRISSPCLKTLILECCDK 310 (412)
Q Consensus 286 ~c~~l--------~~l~~~~~~L~~L~l~~c~~ 310 (412)
+|..- ..+....|+|+.|.+.+|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 76221 11223456677776666654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-08 Score=87.13 Aligned_cols=213 Identities=19% Similarity=0.244 Sum_probs=142.1
Q ss_pred CCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEe---CHH------HHHHHHcCCCCccEEEeeccCCcce
Q 015171 137 YVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCA---DDQ------AIASLISGCPLIEYLEIRSCEGLES 201 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~---~~~------~l~~l~~~~p~Le~L~l~~c~~~~~ 201 (412)
...++++++|+++.+..- .....-++|+..+++++-. .++ .+..-+..||.|++|+|+++..-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 346677788877766432 2334455677777766543 111 2344466899999999999965321
Q ss_pred -e-----eccCCCCccEEEEeeCC-------C---------CceEEEecCcccEEEeeeeeccc-----eEEeccCCCCC
Q 015171 202 -L-----DLVNLSNLKEIILVNTS-------D---------IKRVEIKTSNVNALAIHQTYLFP-----IEVNVSSCGNL 254 (412)
Q Consensus 202 -~-----~i~~l~~L~~L~i~~c~-------~---------l~~~~~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L 254 (412)
+ -+.++.+|++|.+.+|. . .....-+.|+|+.+....+.... ....+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 1 14457899999999991 1 11112256889999998887221 11235678999
Q ss_pred cEEEeeccccchH---HHHHhhcCCCCccEEecccccc-------cccccccccccceEEEecCccc--------ceeec
Q 015171 255 KCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISSPCLKTLILECCDKL--------IQVEI 316 (412)
Q Consensus 255 ~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------l~~l~~~~~~L~~L~l~~c~~l--------~~~~~ 316 (412)
+.+.+..+.+... .+..-+..||+|+.|+|.+..- +......++.|+.|++.+|-.- ..+..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 9999998887653 3344567899999999998411 1111225578999999999652 23445
Q ss_pred cCCCeeeEEEeccee---------eecccccccceEEEEEec
Q 015171 317 ETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSS 349 (412)
Q Consensus 317 ~~~~L~~l~~~~~~~---------~~l~~~~~L~~l~i~~~~ 349 (412)
..|+|+.+.+.|+.. ..+..-+.|++|.++.++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 688999998887765 455567889999997773
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-07 Score=57.11 Aligned_cols=34 Identities=38% Similarity=0.692 Sum_probs=31.5
Q ss_pred CCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 15 LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.8e-09 Score=101.22 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++.-.|+++. .....+|..++ ++..|-.|+|+++++.. ||....+..|++|.|+++...-..+.. +.+..+|+.|
T Consensus 126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence 3555555554 33446666544 46777778888877643 366667777788888777653333332 2334455555
Q ss_pred Eeecc
Q 015171 192 EIRSC 196 (412)
Q Consensus 192 ~l~~c 196 (412)
.+++.
T Consensus 203 hms~T 207 (1255)
T KOG0444|consen 203 HMSNT 207 (1255)
T ss_pred hcccc
Confidence 55543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-09 Score=99.15 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.++-|.+.. .....+|..+..+.+|++|.+..+++... .....+|.|+.+.+..+.....++..-+.....|..|+|
T Consensus 33 ~~~WLkLnr--t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNR--TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEech--hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 344444443 33446677777777777777777655433 445566777777776666644444433445556666666
Q ss_pred eccCCccee-eccCCCCccEEEEeeCCCCce----EEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHH
Q 015171 194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKR----VEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW 268 (412)
Q Consensus 194 ~~c~~~~~~-~i~~l~~L~~L~i~~c~~l~~----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (412)
+.+..-+.. .+....++-.|++++. ++.. +.++...|-.|+++.+.-...+..+..+.+|+.|.|+++.+....
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 655321100 1111234445555443 2222 223444455555555553333334444555555555555544433
Q ss_pred HHHhhcCCCCccEEeccc
Q 015171 269 LCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~ 286 (412)
+.+ +..+.+|+.|.+++
T Consensus 190 LrQ-LPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSN 206 (1255)
T ss_pred Hhc-Cccchhhhhhhccc
Confidence 332 22233344444443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-07 Score=92.22 Aligned_cols=215 Identities=17% Similarity=0.141 Sum_probs=93.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+..+|++... ....+|..+. ++|+.|+++++.+...+. ..+++|+.|+++++.++. +..-+ .+.|+.|+++
T Consensus 179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEECc
Confidence 4566666542 2234554332 456777777765543221 123466666666665521 11101 1345555555
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEe-cCcccEEEeeee---------------------eccceEEeccCCC
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK-TSNVNALAIHQT---------------------YLFPIEVNVSSCG 252 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~-~p~L~~L~l~~~---------------------~~~~~~~~~~~~~ 252 (412)
+|... .+...-..+|+.|+++++ .+..++.. .++|+.|+++++ ....++. ...+
T Consensus 250 ~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~--~l~~ 325 (754)
T PRK15370 250 INRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE--TLPP 325 (754)
T ss_pred CCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc--cccc
Confidence 55321 110000124444444432 22222211 124444444443 3111111 1124
Q ss_pred CCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc-cccccceEEEecCcccceeeccC-CCeeeEEEecce
Q 015171 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDL 330 (412)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~ 330 (412)
+|+.|++++|.+.. ++..+ .++|+.|+++++. +..++. .+++|+.|+|++|.. ..++... +.|+.+.+.++.
T Consensus 326 sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~ 399 (754)
T PRK15370 326 GLKTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNAL-TNLPENLPAALQIMQASRNN 399 (754)
T ss_pred cceeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCC
Confidence 56666666655443 22111 2567777777652 333332 235677777777642 2222211 134444444433
Q ss_pred e--------eecccccccceEEEEEe
Q 015171 331 I--------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 331 ~--------~~l~~~~~L~~l~i~~~ 348 (412)
. .....++.+..+.+..+
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeCC
Confidence 2 12223456666666554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.1e-07 Score=76.07 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=26.0
Q ss_pred cCcccEEEeeeeec--cceEEeccCCCCCcEEEeeccccchHH--HHHhhcCCCCccEEecccc
Q 015171 228 TSNVNALAIHQTYL--FPIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 228 ~p~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~c 287 (412)
+|+|+.|.++++.. ......+..+|+|+.|++.+|++.... -..++..+|+|+.|+-...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 45566666655541 111234556778888888777765421 1224556788888876553
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-07 Score=90.40 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.+|++|+++|...-.. ....-||+|++|.+.+..+..+.+..+..++|+|..|+|+++.--.-..++.+.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4566666666322111 334568999999999998866668888899999999999988554444566678888887
Q ss_pred EeeCCCCce---E--EEecCcccEEEeeeeeccceE-------EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 215 LVNTSDIKR---V--EIKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 215 i~~c~~l~~---~--~~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+.+- .+.. + -....+|+.|+++........ ..-..+|+|+.|+.++..+..+.+..++..-|+|+..
T Consensus 202 mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 7654 1111 0 125678888888876521111 1123488999999999988888888877777877777
Q ss_pred ecccc
Q 015171 283 SMTKC 287 (412)
Q Consensus 283 ~l~~c 287 (412)
..-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 65543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-07 Score=90.92 Aligned_cols=192 Identities=23% Similarity=0.249 Sum_probs=112.3
Q ss_pred hCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEece-eecCC------CCCccCcccceeEeeeEE-eCHHHHHHHHc
Q 015171 113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS 183 (412)
Q Consensus 113 ~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~ 183 (412)
.++++++.+..+.. ....+-.....++.|+.|++++| ..... .....+++|+.|+++++. +++.++..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35788888876432 21223345667889999999873 22111 344567889999998888 58888888888
Q ss_pred CCCCccEEEeeccCCcceeec----cCCCCccEEEEeeCCCCc-----eEEEecCcccEEEeeeeec-------------
Q 015171 184 GCPLIEYLEIRSCEGLESLDL----VNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTYL------------- 241 (412)
Q Consensus 184 ~~p~Le~L~l~~c~~~~~~~i----~~l~~L~~L~i~~c~~l~-----~~~~~~p~L~~L~l~~~~~------------- 241 (412)
.||+|+.|.+.+|..+....+ ..+++|++|+++.|..+. .+...+|+|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 899999999888876543322 236889999999884432 2223466666655443321
Q ss_pred -----cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCccc
Q 015171 242 -----FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL 311 (412)
Q Consensus 242 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l 311 (412)
.........+++++.+.+.++...+......+.+||+|. ..+..+. ..+..++.|++..|...
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~------~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL------CRSDSLRVLNLSDCRLV 414 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh------ccCCccceEecccCccc
Confidence 011122345666666666555533333334445555552 2221110 01122677777777664
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=82.85 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=91.1
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
.+...|++++..+...|.. -.++|+.|+|+++.++. +..-+ +++|+.|++++|.. ..+...-.++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChhhhccccEEECcCC
Confidence 4567888888766543321 13579999999987742 22111 36899999998853 3322111358999999988
Q ss_pred CCCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc-c
Q 015171 219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S 296 (412)
Q Consensus 219 ~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~ 296 (412)
.+..++. -..+|+.|+++++.-..++..+ .++|+.|++++|.+.. ++..+ .++|+.|+++++ .++.++. .
T Consensus 252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l 323 (754)
T PRK15370 252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSN-SLTALPETL 323 (754)
T ss_pred -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCC-ccccCCccc
Confidence 3334332 2347999999887633322222 3589999999887664 11111 124555555553 2222322 2
Q ss_pred ccccceEEEecC
Q 015171 297 SPCLKTLILECC 308 (412)
Q Consensus 297 ~~~L~~L~l~~c 308 (412)
+++|+.|++++|
T Consensus 324 ~~sL~~L~Ls~N 335 (754)
T PRK15370 324 PPGLKTLEAGEN 335 (754)
T ss_pred cccceeccccCC
Confidence 345555555554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-06 Score=77.61 Aligned_cols=180 Identities=18% Similarity=0.157 Sum_probs=127.0
Q ss_pred CCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
..++++++..... ..-++...+.++|.|+.|+|+.+.+..+ .......+|++|.|.+...+.......+...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3788999887321 2223334456789999999999988765 222567799999999988888888888999999999
Q ss_pred EEeeccCC----cceeeccC-CCCccEEEEeeC-----CCCceEEEecCcccEEEeeeee--ccceEEeccCCCCCcEEE
Q 015171 191 LEIRSCEG----LESLDLVN-LSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLK 258 (412)
Q Consensus 191 L~l~~c~~----~~~~~i~~-l~~L~~L~i~~c-----~~l~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~ 258 (412)
|+++.+.. .+.-.+.. .+.++.|....| .+...+..-+||+..+.+..++ ..........+|.+-.|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 99988732 11111221 257888888888 2333444468999999888876 222234456678888899
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++.+++.+.+-...+..||.|..|.+...+....+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 98888876544455788999999999986554433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-07 Score=90.42 Aligned_cols=68 Identities=28% Similarity=0.206 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEe
Q 015171 102 SLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA 173 (412)
Q Consensus 102 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~ 173 (412)
..+..|+..+ .+++.+......- ..+|..++...+|++|....|.+... +....+.+|++|+|..+.+
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHNRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hcchHHHHhc--ccceEecccchhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 4455777543 3677776655321 34444444444444444444443322 2223344444444444433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.8e-08 Score=77.26 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=74.9
Q ss_pred cCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc-eeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~l~~L~~L 213 (412)
++..+.+.|.|+.+.+... +....+.+|+.|+++++.+. .+..-+++.|.|+.|.+..+.-.. .-.+.++|.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 3444444444554443322 33444555555555554431 122224444555555444332110 0122334445555
Q ss_pred EEeeC----CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 214 ILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 214 ~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++... ..+..-......|+.|+++++...-.+..++.+++|+.|.+..+++.. ++.-+..+.+|+.|.+.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 44433 011111112345666677777655556677888888888888777654 444456677888888877
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-06 Score=86.93 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=87.6
Q ss_pred CCCCeeEEEEeceeecCC----CCCccCcccceeEeeeE-Ee---CHHHHHHHHcCCCCccEEEeeccCCcceeecc---
Q 015171 137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREV-CA---DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--- 205 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~--- 205 (412)
.++.|+.|.+.+|..... +....+++|+.|+++++ .. .......+...|++|+.|+++.|..+.+..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 479999999999844322 56778999999999873 22 22234457788999999999999876554432
Q ss_pred -CCCCccEEEEeeCCCCce-----EEEecCcccEEEeeeeecc---ceEEeccCCCCCcEEEee
Q 015171 206 -NLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLF---PIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 206 -~l~~L~~L~i~~c~~l~~-----~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~ 260 (412)
.|++|+.|.+.+|..+.. +...+|+|++|+++++... .......++++|+.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 279999999988954332 3346899999999988721 112224557877776654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.4e-07 Score=91.85 Aligned_cols=210 Identities=21% Similarity=0.231 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++.++++.. ....+|.++..|.+|+.++...+.+..- .......+|+.|....+.+ +-+.........|+.|+
T Consensus 241 ~nl~~~dis~n--~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHN--NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchh--hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeeee
Confidence 37888888864 3457889999999999999999877332 3445667888888777654 22233345567888999
Q ss_pred eeccCCcce----eecc-----------------------CCCCccEEEEeeC---CCCceEEEecCcccEEEeeeeecc
Q 015171 193 IRSCEGLES----LDLV-----------------------NLSNLKEIILVNT---SDIKRVEIKTSNVNALAIHQTYLF 242 (412)
Q Consensus 193 l~~c~~~~~----~~i~-----------------------~l~~L~~L~i~~c---~~l~~~~~~~p~L~~L~l~~~~~~ 242 (412)
+..+..... +.+. ..+.|+.|.+.+. +..-.+...+++|+.|+++.+.-.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 877643210 0000 0122333333322 111111124455666666655422
Q ss_pred ceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc--cccccceEEEecCcccc-eee--c
Q 015171 243 PIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI-QVE--I 316 (412)
Q Consensus 243 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~-~~~--~ 316 (412)
.++ ..+.+++.|++|+++|+.+.. ++.-...++.|++|...+ ..+..+|+ ..+.|+.++++...--. .++ .
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccchhhhhhhhhhC
Confidence 221 234455566666666665544 222233444455444433 12222322 34556666665433211 111 1
Q ss_pred cCCCeeeEEEecce
Q 015171 317 ETPNLSIFKYHGDL 330 (412)
Q Consensus 317 ~~~~L~~l~~~~~~ 330 (412)
..|+|+.|.+.|..
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 22567777766655
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.7e-06 Score=68.80 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=17.7
Q ss_pred cCcccEEEeeeeeccceEEec-cCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
.++|++|.++++....+...+ ..+|+|++|.++++.+.+-.-...+..+|+|+.|++.+.
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 344555555554422211112 245666666666666544111122345666666666653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=9.9e-06 Score=82.41 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=70.6
Q ss_pred CCCccEEEeeccCCcc-ee--eccC-CCCccEEEEeeC----CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcE
Q 015171 185 CPLIEYLEIRSCEGLE-SL--DLVN-LSNLKEIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKC 256 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~-~~--~i~~-l~~L~~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~ 256 (412)
-.+|+.|++++..... .+ .+.. +|+|++|.+.+- +.+..+..++|||.+|+++++.... ...+++++||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-LSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-cHHHhccccHHH
Confidence 3467777777754332 11 2222 678888877763 2333444467778888887776333 245667777777
Q ss_pred EEeeccccch-HHHHHhhcCCCCccEEeccccccccc---------ccccccccceEEEecCc
Q 015171 257 LKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTS---------VRISSPCLKTLILECCD 309 (412)
Q Consensus 257 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~---------l~~~~~~L~~L~l~~c~ 309 (412)
|.+.+-.+.. ..+.. +.++.+|+.|+++.-..... .....|+|+.|+.++-.
T Consensus 200 L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777666655 22333 44577777887776321111 11245666666666543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=73.77 Aligned_cols=275 Identities=18% Similarity=0.134 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHhccccCCCCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeE
Q 015171 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV 143 (412)
Q Consensus 64 ~~~~~~~v~~~ll~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~ 143 (412)
..-+...|++.++..-........+.++ .-...+.-|+.......-+. .+..........|. ..+....+.
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~-~~~~~~~rr 527 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQ-VKSWNSVRR 527 (889)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccc-ccchhheeE
Confidence 4445566766663221111233333333 22344555555444333333 22221112223333 233456677
Q ss_pred EEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCC
Q 015171 144 LELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (412)
Q Consensus 144 L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~ 220 (412)
+.+.++.....+....++.|++|-+.++.. -......++...|.|..|++++|.....+ .|..+-+||.|+++++ +
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-G 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-C
Confidence 777776655445666777888888888752 11222334567899999999988776654 3555678888888766 4
Q ss_pred CceEEEecC---cccEEEeeeeeccce-EEeccCCCCCcEEEeeccccc-hHHHHHhhcCCCCccEEecccccc------
Q 015171 221 IKRVEIKTS---NVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYLSMTKCHK------ 289 (412)
Q Consensus 221 l~~~~~~~p---~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~------ 289 (412)
+..++.... .|.+|++........ .-....+++|++|.+...... +.....-+..+.+|+.+....+..
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l 686 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL 686 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh
Confidence 444444333 445555544431111 122233677777777544311 111222223444444444433111
Q ss_pred --------------------cc--cccccccccceEEEecCcccceeec--------c-CCCeeeEEEeccee----eec
Q 015171 290 --------------------LT--SVRISSPCLKTLILECCDKLIQVEI--------E-TPNLSIFKYHGDLI----SFS 334 (412)
Q Consensus 290 --------------------l~--~l~~~~~~L~~L~l~~c~~l~~~~~--------~-~~~L~~l~~~~~~~----~~l 334 (412)
.. .......+|+.|.|.+|...+.... . +|++..+.+.++.. ...
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 00 0111446778888888877531111 1 23333333333322 334
Q ss_pred ccccccceEEEEEe
Q 015171 335 SNALSLSETSLCFS 348 (412)
Q Consensus 335 ~~~~~L~~l~i~~~ 348 (412)
.-+++|+.+.+..+
T Consensus 767 ~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSC 780 (889)
T ss_pred hccCcccEEEEecc
Confidence 45778888888554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=2.3e-05 Score=77.26 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=108.7
Q ss_pred ccCCCCceeEEEEEecCCCCCChhhHHHHHH-HHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCCCC
Q 015171 79 QRKMISIKKFSLELDLINSPENASLAGRCLG-LAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSE 156 (412)
Q Consensus 79 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~-~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~ 156 (412)
-..+.+++.|+.-.... .+...+...-. ..+-...+.+.+..... .+.+ |-.++.+++|++|.+.+|.+.....
T Consensus 51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh
Confidence 34567788887665533 33333332211 11123455555554322 2333 7789999999999999997654311
Q ss_pred CccC---------------------------------cccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee
Q 015171 157 NVKL---------------------------------FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (412)
Q Consensus 157 ~~~l---------------------------------~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~ 203 (412)
...+ ..|.+.+.+++.. ..+..-+.-.|.||.|+|+.+...+.-.
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence 1111 1223333333332 0111112234677788887776544334
Q ss_pred ccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccE
Q 015171 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (412)
Q Consensus 204 i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (412)
+.-|+.|++|+++.+ ..+..+......|..|.+.++.-.. ...+.++.+|+.|++++|-+.+..-...+..+..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 445678888888755 3333333333347777777776222 3355677778888887776655322223344556667
Q ss_pred Eeccc
Q 015171 282 LSMTK 286 (412)
Q Consensus 282 L~l~~ 286 (412)
|.|.+
T Consensus 284 L~LeG 288 (1096)
T KOG1859|consen 284 LWLEG 288 (1096)
T ss_pred HhhcC
Confidence 77766
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=3.5e-05 Score=80.60 Aligned_cols=198 Identities=22% Similarity=0.244 Sum_probs=125.1
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
.+.++.|+++. .....++|..++.+-+|++|++++..+. .|....++..|.+|++.....-. .+..+....++|++|
T Consensus 570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEE
Confidence 35777787776 3355689999999999999999987664 34667788888888888765411 124445568899999
Q ss_pred EeeccC-Cccee---eccCCCCccEEEEeeCCC--CceEEEecCccc----EEEeeeeeccceEEeccCCCCCcEEEeec
Q 015171 192 EIRSCE-GLESL---DLVNLSNLKEIILVNTSD--IKRVEIKTSNVN----ALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (412)
Q Consensus 192 ~l~~c~-~~~~~---~i~~l~~L~~L~i~~c~~--l~~~~~~~p~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (412)
.+.... ..+.. .+..+.+|+.+.+..++. +..+ ...++|. .+.+.++........+..+.+|+.|.+..
T Consensus 648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 648 RLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 887654 11111 233456677777655532 0111 1233333 22222233333445667889999999988
Q ss_pred cccchHHHH---H-hhc-CCCCccEEecccccccccccc--cccccceEEEecCcccce
Q 015171 262 LPIEDEWLC---N-GIS-KLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQ 313 (412)
Q Consensus 262 ~~~~~~~~~---~-~~~-~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~ 313 (412)
+.+.+.... . ... .|+++..+.+.+|.....+.. .+|+|+.|++..|..+++
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 877542111 0 011 266777777777877766553 678999999999988643
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=2.3e-05 Score=71.89 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=57.2
Q ss_pred hcCCCCccEEecccccccccccc----cccccceEEEecCccc---ceeeccCCCeeeEEEeccee-----eeccccccc
Q 015171 273 ISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNALSL 340 (412)
Q Consensus 273 ~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l---~~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L 340 (412)
+..+|+|++|++++. .++.+.. ....++.|++.....- .....+..+|+.|.+.|... -.++.+.+|
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 556788888888873 3333322 3446677776654331 13334566788888888776 567778889
Q ss_pred ceEEEEEeccchh-hHHHHHHHHHh
Q 015171 341 SETSLCFSSHLMV-NIEWVVEYFEI 364 (412)
Q Consensus 341 ~~l~i~~~~~~~~-~~~~~~~~~~~ 364 (412)
.++.+-.+...|. -..|+.+.+++
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhh
Confidence 9998866644333 45666665544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.18 E-value=5.4e-05 Score=67.10 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=10.2
Q ss_pred cCCccccCCCCeeEEEEece
Q 015171 130 NLPEIIFYVESLHVLELSYC 149 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~ 149 (412)
.+|..+..+++|..+.++.|
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSAL 224 (490)
T ss_pred ccccchHHhhhhheeeeecc
Confidence 33433444556666665554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=2.9e-05 Score=68.69 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=89.3
Q ss_pred CCeeEEEEeceeecCC----CCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeecc--CCCCcc
Q 015171 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--NLSNLK 211 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~--~l~~L~ 211 (412)
.-++-|.+.+|.++.. .....+..++.|+|.++.+ +.+.+..++.+.|.|+.|.|+.+.-...+.-. ...+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3455666777776554 2234567889999999988 67778888999999999999877543332111 135788
Q ss_pred EEEEeeC----CCCceEEEecCcccEEEeeeeeccceEE----eccCCCCCcEEEeeccccc-hHHHHHhhcCCCCccEE
Q 015171 212 EIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV----NVSSCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYL 282 (412)
Q Consensus 212 ~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L 282 (412)
.|.+++. ...+...-+.|.++.|.++.+....+-. .-.--+.++.|++..|... +.....+...|||+..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8877765 2222333355666666666553111000 0011235555666555432 22344455667888888
Q ss_pred eccccc
Q 015171 283 SMTKCH 288 (412)
Q Consensus 283 ~l~~c~ 288 (412)
.+..|+
T Consensus 205 ~v~e~P 210 (418)
T KOG2982|consen 205 FVCEGP 210 (418)
T ss_pred eeecCc
Confidence 877663
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=3.6e-06 Score=68.33 Aligned_cols=147 Identities=19% Similarity=0.264 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++..|.++. .....+|+.+....+|+.|+++++.+. .+.....++.|+.|++.-++. ..+..-+.++|.||.|++
T Consensus 34 ~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhccc--CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhc
Confidence 344444443 233455666666666777777666553 234555666666666654433 112222455667777776
Q ss_pred eccCCccee---eccCCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
.++.-.+.. .+..+.+|+.|.+.+. .++-++- ...+|+.|.+.++.-...+..++.+..|++|++.++.+..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 665432211 0111234555555443 1222221 2345555555555544445566777888888887776543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00058 Score=60.71 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=10.3
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.+++.|+.+.+..+
T Consensus 393 ~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGN 409 (490)
T ss_pred cccccccHHHHHhhcCC
Confidence 45556666776666544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=62.05 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=66.4
Q ss_pred cCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeee
Q 015171 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ 238 (412)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~ 238 (412)
.+++++.|++++|.+. .+.. --++|++|.+.+|..+..+.-.-.++|+.|.+.+|..+..+ .++|+.|.+.+
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCC
Confidence 3567777777766431 1111 12257777777776654332101246777777777554433 24566666654
Q ss_pred eeccceEEeccCCC-CCcEEEeeccccchHHHHHhhcCC-CCccEEecccccccccccccccccceEEEecC
Q 015171 239 TYLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC 308 (412)
Q Consensus 239 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c 308 (412)
... ..+..+| +|+.|.+.+..... .......+ ++|+.|.+.+|.....-...+.+|+.|+++.+
T Consensus 122 n~~----~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 122 SAT----DSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCC----cccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 321 1223332 56666653322110 00000112 46777777776644322223456777776553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=8.4e-06 Score=74.86 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred cccCCccccCCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee-ecc
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLV 205 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-~i~ 205 (412)
..++|..+.+..+|++|+.+.+.+.. ++..+.+-.|..|+..++.+. ++..-+.+|.+|..|.+.+++...-. ...
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i 180 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHI 180 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHH
Confidence 34556666666666666665554422 244445555555555555441 11111223444555555554322110 011
Q ss_pred CCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 206 ~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
++.+|++|+.... -+..++. ...+|+.|++..+..... -.|++|..|++++++.+.+.. ...+...+++++..|
T Consensus 181 ~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceee
Confidence 1345666554332 2223322 233455555555542222 267888888888887777654 133455678888888
Q ss_pred ecccccccccccc---cccccceEEEecCcccc-eeeccCCCeeeEEEecce
Q 015171 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDL 330 (412)
Q Consensus 283 ~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~ 330 (412)
++.+ ..++.++. ...+|++|++++..... ....+.-+|+++.+.|.+
T Consensus 258 DLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 258 DLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred eccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence 8887 34444443 33567888887764421 111111145666666643
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00034 Score=47.63 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=23.2
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeecc
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 196 (412)
+|++|++++|.+... ..+..+++|++|+++++.+..-. ...+.++|+|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 345555555433211 23344455555555444441100 112344455555555444
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00048 Score=46.89 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred CcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 229 SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
|+|++|+++++.-..+. ..+..+++|++|+++++.+..- ....+.++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 34444554444311111 2344556666666665555431 1223455556666665553
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0031 Score=59.72 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=15.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEece
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYC 149 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~ 149 (412)
.+++.|+++.+. ...+|. + -++|++|.+++|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~-L--P~sLtsL~Lsnc 82 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV-L--PNELTEITIENC 82 (426)
T ss_pred cCCCEEEeCCCC--CcccCC-C--CCCCcEEEccCC
Confidence 466666666542 223331 1 124666666654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0015 Score=63.08 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCeeEEEEeceeecCCCC-CccC-cccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeecc-CCCCccEEE
Q 015171 138 VESLHVLELSYCKLQQPSE-NVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEII 214 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~~-~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~l~~L~~L~ 214 (412)
.+.++.|.+.++.+...+. ...+ ++|+.|+++++.+.. +..-+..+|.|+.|.+++|....-.... ..+.|+.|.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 3556666666655543322 3333 267777776665522 1122455677777777666443222221 345666666
Q ss_pred EeeCCCCceEEE--ecCc-ccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 215 LVNTSDIKRVEI--KTSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 215 i~~c~~l~~~~~--~~p~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
+++. .+..++. ..++ |+++.++++........+..+.++..+.+.++.+.. +......+++++.|++++
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccc
Confidence 6654 3333322 1233 666666665322223334445555555554444433 122344455566666665
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.4e-05 Score=73.36 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 206 ~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
+++++..|++++. .+++++- -..+|++|+++++.....+..++++ .|+.|.+.|+.+..
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 3567777777665 3333332 3456777888777755566677777 77778887777644
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00028 Score=61.56 Aligned_cols=104 Identities=27% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEee
Q 015171 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 116 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~ 194 (412)
++++.+..+.....++....-.+..|+.|++.++.+.+...+-.+|+||+|.++.+.. ....+.-++..||+|.+|.++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence 3444444433333334444445677888888888887777777889999999998855 334566667788999999999
Q ss_pred ccCCcc--ee-eccCCCCccEEEEeeCC
Q 015171 195 SCEGLE--SL-DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 195 ~c~~~~--~~-~i~~l~~L~~L~i~~c~ 219 (412)
++..-. .+ .+..+.+|..|.+.+|+
T Consensus 100 ~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 100 GNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCccccccccchhhhhcchhhhhcccCC
Confidence 885432 11 12235678888888773
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0017 Score=62.69 Aligned_cols=166 Identities=22% Similarity=0.231 Sum_probs=111.6
Q ss_pred CceEEEEEeCCCccccCCccccCCC-CeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+..+.+.. ....++|......+ +|+.|+++++.+... .....+++|+.|+++++.+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 566666665 34457777777774 999999999887655 467899999999999997733 333233678999999
Q ss_pred eeccCCcceeec-cCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHH
Q 015171 193 IRSCEGLESLDL-VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 193 l~~c~~~~~~~i-~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (412)
++++..-.--.. .....|+.|.+.+......+. -..+++..+.+.++........++.+++++.|+++++.+...
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i-- 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI-- 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc--
Confidence 998855322111 122448888887653222221 144566666655554222235667788899999999888773
Q ss_pred HHhhcCCCCccEEecccc
Q 015171 270 CNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c 287 (412)
.. +....+++.|++++-
T Consensus 271 ~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cc-ccccCccCEEeccCc
Confidence 22 567788999999873
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.00022 Score=62.64 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCccEEEEeeCCCCceEEE--ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 208 ~~L~~L~i~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
.+.++|+.++| ++..|.+ .+|.|+.|.++-+.... ...+..|++|++|.|..|.+.+-.-...+.++|+|++|-|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45666777766 4444443 57778888887665222 44567788899888888877764444456788888888887
Q ss_pred cccccccc--------cccccccceEE
Q 015171 286 KCHKLTSV--------RISSPCLKTLI 304 (412)
Q Consensus 286 ~c~~l~~l--------~~~~~~L~~L~ 304 (412)
..+....- ....|+|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 73332221 22567777774
|
|
| >PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0095 Score=32.51 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=22.4
Q ss_pred ccceeEeeeEEe-CHHHHHHHHcCCC
Q 015171 162 SLRKLALREVCA-DDQAIASLISGCP 186 (412)
Q Consensus 162 ~L~~L~L~~~~~-~~~~l~~l~~~~p 186 (412)
+||+|+|.++.+ +++.+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ]. |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0029 Score=55.62 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=27.3
Q ss_pred CCccCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccC
Q 015171 156 ENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 156 ~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....||.|++.+|+.+.+ ..+.+..+++....|+.|.+.+|.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 344566666666666666 234566667777777777777763
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0035 Score=55.14 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=91.2
Q ss_pred HHHcCCCCccEEEeeccCCccee------eccCCCCccEEEEeeCCCCceE-----------------EEecCcccEEEe
Q 015171 180 SLISGCPLIEYLEIRSCEGLESL------DLVNLSNLKEIILVNTSDIKRV-----------------EIKTSNVNALAI 236 (412)
Q Consensus 180 ~l~~~~p~Le~L~l~~c~~~~~~------~i~~l~~L~~L~i~~c~~l~~~-----------------~~~~p~L~~L~l 236 (412)
..+..||.|+..+++++.+.... -|.+...|++|.+++| ++..+ ..+.|.|+++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34568999999999998664322 1344478999999999 11111 125688999888
Q ss_pred eeeeccceE-----EeccCCCCCcEEEeeccccchHHHHHh----hcCCCCccEEeccccc--cc-----cccccccccc
Q 015171 237 HQTYLFPIE-----VNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKCH--KL-----TSVRISSPCL 300 (412)
Q Consensus 237 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~--~l-----~~l~~~~~~L 300 (412)
..+...... ..+.+-.+|+.+.+..+.+....+..+ +..+.+|+.|++.+.. .. ....-..+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 777622111 123344689999998888876543322 3457889999998731 11 1111134567
Q ss_pred ceEEEecCcccc----e-----eeccCCCeeeEEEe
Q 015171 301 KTLILECCDKLI----Q-----VEIETPNLSIFKYH 327 (412)
Q Consensus 301 ~~L~l~~c~~l~----~-----~~~~~~~L~~l~~~ 327 (412)
+.|.+..|-... . -....|+|+.|+..
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccc
Confidence 888888885531 1 12356777777653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0038 Score=56.28 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=35.3
Q ss_pred CcccCCCCC----HHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 8 ~~D~is~LP----devl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
..|.++.|| |++...||+||+..+++.+..|||+|+.+
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 368899999 99999999999999999999999999963
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.013 Score=36.67 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
++|++|+++++.+.+ ++..+.++++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467888888887776 4554677888888888875
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0017 Score=56.79 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.9
Q ss_pred cCcccEEEeeeee
Q 015171 228 TSNVNALAIHQTY 240 (412)
Q Consensus 228 ~p~L~~L~l~~~~ 240 (412)
+|+|+++.++++.
T Consensus 90 ~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 90 APNLKVLNLSGNK 102 (260)
T ss_pred CCceeEEeecCCc
Confidence 3444444444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.012 Score=60.04 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=67.3
Q ss_pred CccEEEEeeCCCCceEE---EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEec
Q 015171 209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (412)
Q Consensus 209 ~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (412)
.++.|++.++.--..++ ..+++|+.|+++++. ...++..++.+++|+.|++++|.+... ++..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 36677777662111111 256789999998887 334455678899999999999888764 3444678899999999
Q ss_pred cccccccccccc----ccccceEEEecCccc
Q 015171 285 TKCHKLTSVRIS----SPCLKTLILECCDKL 311 (412)
Q Consensus 285 ~~c~~l~~l~~~----~~~L~~L~l~~c~~l 311 (412)
+++.....++.. ..++..+++.++..+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 986544444432 234556777665544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.01 Score=37.24 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=28.4
Q ss_pred CcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 229 SNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
|+|++|+++++....++..++++++|+.|+++++.+.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 57888888888744444457899999999999998775
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.015 Score=48.97 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred cCcccEEEeeeeecc--ceEEeccCCCCCcEEEeeccccchHHH--HHhhcCCCCccEEeccc
Q 015171 228 TSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTK 286 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 286 (412)
+|+|..|.+.++... .-...+..||.|++|.+-++.+....- ..++..+|+|+.|++..
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 466666666665511 112234566777777776666554211 12345567777777765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.0017 Score=59.91 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecCC--CCCccCcccceeEeee-EEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALRE-VCA 173 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~-~~~ 173 (412)
...++.++. .....+|+..| ..++|+.|+|+++.+... ..+.++++|.+|.+.+ +.+
T Consensus 68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 555666664 34457777654 589999999999876433 5567788888887776 555
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.0042 Score=52.26 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=48.1
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeec---cCCCCccEE
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL---VNLSNLKEI 213 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i---~~l~~L~~L 213 (412)
.++.++-+++.+... .-..+++.++.|.+.+|.. +|..+..+-.-.|+|+.|+|++|+.+++..+ ..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555433221 3355677777777777777 7777777666777788888887777654432 234666666
Q ss_pred EEee
Q 015171 214 ILVN 217 (412)
Q Consensus 214 ~i~~ 217 (412)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.053 Score=45.84 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=29.2
Q ss_pred CeeEEEEeceeecCCCCCccCcccceeEeeeEEeC--HHHHHHHHcCCCCccEEEeeccC
Q 015171 140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....++|+++.+.....+..++.|.+|.+.+++++ +..+.. ..|+|..|.+.++.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcc
Confidence 44555566555544444555666666666666652 222222 24566666666553
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.0016 Score=57.40 Aligned_cols=96 Identities=23% Similarity=0.187 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l 193 (412)
+++.|+.-+|.-.+.. ....++.|+.|.|+-+.+..-..+..|.+|+.|.|..+.+ +-+.+.. +.+.|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence 4566655554433332 2345688899999988877667788899999999999888 4444443 678999999999
Q ss_pred eccCCcce-------eeccCCCCccEEE
Q 015171 194 RSCEGLES-------LDLVNLSNLKEII 214 (412)
Q Consensus 194 ~~c~~~~~-------~~i~~l~~L~~L~ 214 (412)
..++..+. ..+..+|+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 87654321 2344578888886
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.028 Score=57.48 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=58.5
Q ss_pred ccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEe
Q 015171 231 VNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILE 306 (412)
Q Consensus 231 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~ 306 (412)
++.|+++++. ....+..+..+++|+.|+|+++.+... ++..+..+++|+.|+++++.....++. .+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5667776665 334455677889999999998887653 344467789999999998654444443 56789999998
Q ss_pred cCccccee
Q 015171 307 CCDKLIQV 314 (412)
Q Consensus 307 ~c~~l~~~ 314 (412)
++.....+
T Consensus 499 ~N~l~g~i 506 (623)
T PLN03150 499 GNSLSGRV 506 (623)
T ss_pred CCcccccC
Confidence 87654333
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.026 Score=50.66 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.6
Q ss_pred cccCCCCCHHHHHHHHcc-----CChHHHHHHhhhhhchhhh
Q 015171 9 VDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 9 ~D~is~LPdevl~~Ils~-----L~~~~~~~~~~vskrWr~l 45 (412)
-+.|+.||||||..||.. ++.+++.++++|||.|+..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 355789999999999974 5679999999999999853
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.016 Score=48.95 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=41.5
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccC----CCCccEEEEeeCCCCc
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVN----LSNLKEIILVNTSDIK 222 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~----l~~L~~L~i~~c~~l~ 222 (412)
.++.++-+++.+..+++.. +.+++.++.|.+.+|..++++.+.. .++|+.|+|++|..++
T Consensus 102 ~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3466666677666777777 5789999999999999887765432 2556666666554443
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.068 Score=50.20 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHccCC-hHHHHHHhhhhhchhhhccc
Q 015171 12 ISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 12 is~LPdevl~~Ils~L~-~~~~~~~~~vskrWr~lw~~ 48 (412)
.++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999996 57999999999999986443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.0049 Score=59.67 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=21.0
Q ss_pred ccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 231 VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 231 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
|.+|+++.+....+++.|..+..|++|-|.+|.+..
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 555666555544455556666666666666665544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.0058 Score=60.95 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=54.5
Q ss_pred eeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCC--cceeeccCCCCccEEEEee
Q 015171 141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN 217 (412)
Q Consensus 141 L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~--~~~~~i~~l~~L~~L~i~~ 217 (412)
|...+.+.+.+... ....-++.|+.|+|+++.+.+-. .+..||.|+.|+|+.+.- +..+...+| .|..|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 33444444433222 33444566777777776663222 244567777777766532 222333332 366666655
Q ss_pred CCCCceEE-E-ecCcccEEEeeeee--ccceEEeccCCCCCcEEEeecccc
Q 015171 218 TSDIKRVE-I-KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 218 c~~l~~~~-~-~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
+ .++.+. + +..+|..|+++.+. ...-...+..+..|+.|.|.||.+
T Consensus 242 N-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 N-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 111111 1 34455555555444 111111223345555566655544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.034 Score=53.97 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=60.1
Q ss_pred ccCCCCeeEEEEeceeecCCCC-CccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccE
Q 015171 135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE 212 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~ 212 (412)
+..+++|+.|++.++.+..... ...+++|+.|+++++.+ +-..+. .++.|+.|.+.+|.....-.+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence 5556788888888877765544 66788888888888877 333333 34558888888775543333333456666
Q ss_pred EEEeeC--CCCceE-EEecCcccEEEeeeee
Q 015171 213 IILVNT--SDIKRV-EIKTSNVNALAIHQTY 240 (412)
Q Consensus 213 L~i~~c--~~l~~~-~~~~p~L~~L~l~~~~ 240 (412)
+++.++ ..+... ....++++.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666655 111110 1234455555555544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.2 Score=49.96 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.8
Q ss_pred cCCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 6 ~~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
....|.++.||.|+..+||++|+.++++.+++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3457899999999999999999999999999999999864
|
|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.47 Score=36.18 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=26.7
Q ss_pred cCCCCCHHHHHHHHccCChHHHHHHhhhhh
Q 015171 11 GISTLPEPILHHILSFLPFKEVAQTCLLSK 40 (412)
Q Consensus 11 ~is~LPdevl~~Ils~L~~~~~~~~~~vsk 40 (412)
.+.+||+|++..||.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999999988887776
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.41 Score=25.93 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=10.4
Q ss_pred cccceeEeeeEEe-CHHHHHHH
Q 015171 161 FSLRKLALREVCA-DDQAIASL 181 (412)
Q Consensus 161 ~~L~~L~L~~~~~-~~~~l~~l 181 (412)
++|+.|+|++|.. +|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555543 55554443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.036 Score=54.00 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=79.5
Q ss_pred ccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc-eeeccC
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVN 206 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~ 206 (412)
-++|..+..|..|+.+.|..+.+. .+....++..|+.|+|+.+.+. .+..-+-.|| |+.|.++++.... ...+..
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccccCCccccc
Confidence 345555555566666666654433 2244556667777777766551 1111122344 6666666654321 112333
Q ss_pred CCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEe
Q 015171 207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (412)
Q Consensus 207 l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (412)
.++|..|+.+.| .+..+. ....+|+.|.+..+....++..+. .-.|..|++++|++.. ++--+..+..|+.|.
T Consensus 165 ~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeee
Confidence 467777777665 222221 233455555555554222233333 2346667777777765 344456667777777
Q ss_pred cccc
Q 015171 284 MTKC 287 (412)
Q Consensus 284 l~~c 287 (412)
|.+.
T Consensus 241 LenN 244 (722)
T KOG0532|consen 241 LENN 244 (722)
T ss_pred eccC
Confidence 7763
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.37 E-value=0.34 Score=47.04 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l 193 (412)
++..+++... ...++...+..+++|++|+++++.+........++.|+.|++.++.+ +-..+ ..++.|+.+++
T Consensus 96 ~l~~l~l~~n--~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDN--KIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL 169 (414)
T ss_pred ceeeeecccc--chhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccC
Confidence 4555554442 22233333555778888888887776666666777788888888776 22222 23667777777
Q ss_pred eccCCcceee--ccCCCCccEEEEeeC
Q 015171 194 RSCEGLESLD--LVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~~--i~~l~~L~~L~i~~c 218 (412)
+++.....-. ...+.+++.+.+.+.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCC
Confidence 7765433222 244566776666654
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=84.12 E-value=0.87 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=13.2
Q ss_pred CCCCcEEEeeccccchHHHHH
Q 015171 251 CGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~ 271 (412)
+++|++|+|+++.+.++....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 467888888888877766544
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=83.08 E-value=0.92 Score=21.78 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=2.7
Q ss_pred ccEEeccc
Q 015171 279 LEYLSMTK 286 (412)
Q Consensus 279 L~~L~l~~ 286 (412)
|+.|++++
T Consensus 3 L~~L~l~~ 10 (17)
T PF13504_consen 3 LRTLDLSN 10 (17)
T ss_dssp -SEEEETS
T ss_pred cCEEECCC
Confidence 33333333
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 9e-13
Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 47/309 (15%)
Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSL 71
+LP+ +L I S L E+ + + KRW + + ++ + + +
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR------------LASDESLWQTLDLTG 56
Query: 72 EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNL 131
+ + +++S + + + + + + L + E L
Sbjct: 57 KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV------QHMDLSNSVIEVSTL 110
Query: 132 PEIIFYVESLHVLELSYCKLQQPSENV--KLFSLRKLALREVCA-DDQAIASLISGCPLI 188
I+ L L L +L P N K +L +L L + A+ +L+S C +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 189 EYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
+ L + C + ++ + ++ L ++ S+++ L L
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----NLQKSDLSTLVRRCPNL-- 224
Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS----PC 299
+ +++S LK ++ +L L++LS+++C+ + + P
Sbjct: 225 VHLDLSDSVMLK----------NDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273
Query: 300 LKTLILECC 308
LKTL +
Sbjct: 274 LKTLQVFGI 282
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 6e-11
Identities = 57/335 (17%), Positives = 104/335 (31%), Gaps = 40/335 (11%)
Query: 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQVW-QTFPDVEVGGM-FTNPRK 63
++ + PE +L H+ SF+ + + L K W ++ V +G +P
Sbjct: 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60
Query: 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH 123
+ L + P +++ L +E+ L
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL------EEIRLKR 114
Query: 124 WRSERRNLPEIIFYVESLHVLELSYCK------LQQPSENVKLFSLRKLALRE---VCAD 174
L I ++ VL LS C+ L + + +L++L LRE
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR--NLKELDLRESDVDDVS 172
Query: 175 DQAIASLISGCPLIEYLEIRSC------EGLESLDLVNLSNLKEIIL---VNTSDIKRVE 225
++ + L I LE L + NLK + L V + +
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLL 231
Query: 226 IKTSNVNALAIHQ-------TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278
+ + L + V +S C L+CL F +L S
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR 290
Query: 279 LEYLSMTKCHKLTS--VRISSPCLKTLILECCDKL 311
L L+++ + V++ C K L D +
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 8e-10
Identities = 45/354 (12%), Positives = 100/354 (28%), Gaps = 43/354 (12%)
Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQV-WQTFPDVEVGGMFT-NPRKSKEIL 68
+ ++ +++++ + + L +RW ++ +T V + +T P +
Sbjct: 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72
Query: 69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRC--------------------L 108
+L L + + +P ++ L
Sbjct: 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132
Query: 109 GLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQ---------PSENV 158
A +++ L L L I+ + + L + + N
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192
Query: 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV----NLSNLKEII 214
L L + + ++ C + +++ E LE + NL
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252
Query: 215 LVNTSDIKRVEIKTSN---VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271
L + + + L + + + ++ L + +E E C
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312
Query: 272 GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLS 322
I K P LE L + + LK L +E +E E +S
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 8e-10
Identities = 76/466 (16%), Positives = 161/466 (34%), Gaps = 132/466 (28%)
Query: 1 MMRIGVL---EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVG-- 55
M + +L E+D I + + + F LLSK+ +++ Q F VE
Sbjct: 41 MPK-SILSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQ-EEMVQKF--VEEVLR 88
Query: 56 ---GMFTNPRKSKEILTSLE-------------------PALLNRQRKMISIKKFSLELD 93
+P K+++ S+ ++R + + +++ LEL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 94 LINSPENASLAGRCLG-----LAIESEVKELVL------VHWRS-ERRNLPE-IIFYVES 140
+N + G LG +A++ + V + W + + N PE ++ ++
Sbjct: 149 ---PAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 141 L-HVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYL-EIRSCE 197
L + ++ ++ S N+KL + LR + L L+ L +++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV--LLNVQNAK 257
Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
+ +L + K IL+ T + L+ T ++ + +
Sbjct: 258 AWNAFNL----SCK--ILLTTRFK-------QVTDFLSAATTTHISLDHHSMT------- 297
Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-TSVRISSPCLKTLILECCDKLIQVEI 316
P E + L LL+YL + L V ++P ++I E I+ +
Sbjct: 298 ---LTPDEVKSL--------LLKYLDC-RPQDLPREVLTTNPRRLSIIAE----SIRDGL 341
Query: 317 ETPNLSIFKY-----HGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKF 371
T + +K+ +I S N L +E + F+ L++F
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYR---------------KMFDRLSVFPPS 384
Query: 372 ----SKVLNL---QCREGEVCQWLNACLQYIYIWLNVPFYRVIYHH 410
+ +L+L + +V +N +Y + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 3e-06
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 8 EVDGISTLPEPILHHILSFLPFKEVAQTC-LLSKRWKQV 45
V+ ++ LPEP+L +L+ LP E+ Q C L+ RWK++
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 26/251 (10%)
Query: 68 LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
A NR + + L A + L L
Sbjct: 35 WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL--RSVP 92
Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCP 186
P+ F + L + + L + P + L L L + P
Sbjct: 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNP 138
Query: 187 LIEYL--EIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
L L I S L L + L E+ + ++D N+ +L + T +
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197
Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISS-PCL 300
+ ++++ NLK LK P+ L I LP LE L + C L + L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 301 KTLILECCDKL 311
K LIL+ C L
Sbjct: 256 KRLILKDCSNL 266
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 8e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
+LP+ +L I S L E+ + + KRW ++
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTF 49
++ LP + +ILSFL ++ Q + W + W+ F
Sbjct: 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.66 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.56 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.54 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.48 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.47 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.46 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.44 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.44 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.43 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.43 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.41 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.41 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.4 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.4 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.4 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.4 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.4 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.37 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.37 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.37 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.36 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.36 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.36 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.34 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.34 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.34 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.34 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.33 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.33 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.32 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.32 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.32 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.31 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.31 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.31 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.31 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.31 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.3 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.3 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.3 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.29 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.29 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.28 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.27 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.25 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.23 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.22 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.22 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.22 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.21 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.2 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.2 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.2 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.2 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.2 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.19 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.19 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.19 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.18 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.18 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.18 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.17 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.16 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.16 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.16 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.16 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.16 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.15 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.13 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.13 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.13 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.13 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.13 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.12 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.11 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.11 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.09 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.08 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.07 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.05 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.05 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.04 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.04 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.04 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.04 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.03 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.02 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.99 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.98 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.95 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.88 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.85 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.82 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.8 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.78 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.75 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.74 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.7 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.69 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.62 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.55 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.52 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.51 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.48 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.46 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.42 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.41 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.4 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.37 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.36 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.35 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.33 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.32 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.28 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.27 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.27 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.2 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.14 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.07 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.99 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.97 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.87 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.83 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.81 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.73 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.7 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.68 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.63 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.6 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.55 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.54 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.52 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.26 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.83 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.77 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 96.62 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 96.61 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.37 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.84 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.23 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.05 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 94.84 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 94.44 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 93.31 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 89.6 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 88.97 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 87.38 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 81.39 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-24 Score=214.77 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=29.4
Q ss_pred CcccCCCCCHHHHHHHHccCC-hHHHHHHhhhhhchhhh
Q 015171 8 EVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~-~~~~~~~~~vskrWr~l 45 (412)
+.|+++.|||||+.+||+||+ .+|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=209.56 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=159.2
Q ss_pred CCcccCC----CCCHHHHHHHHccC-ChHHHHHHhhhhhchhhhcccCCe-eeeecccCCCchhhHH-------------
Q 015171 7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEI------------- 67 (412)
Q Consensus 7 ~~~D~is----~LPdevl~~Ils~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~------------- 67 (412)
++.|+++ .||||++.+||+|| +.+|+++++.|||||++++...+. +.+...+... ...+
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT--PDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSC--HHHHHHHCTTCSEEEEE
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccC--hHHHHHhCCCCeEEEec
Confidence 3456666 89999999999999 899999999999999987533222 2222111110 0000
Q ss_pred -------------------HHHHHHHHhccccCCCCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC-c
Q 015171 68 -------------------LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-E 127 (412)
Q Consensus 68 -------------------~~~v~~~ll~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~ 127 (412)
...+.... ...+.++.+.++.. .-......++......++++|++..+.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 82 GKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 00000000 01123444444422 1112222333333323466666655331 1
Q ss_pred cccCCccccCCCCeeEEEEeceeecCCC------CCccCcccceeEeeeEEeC---HHHHHHHHcCCCCccEEEeeccCC
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQPS------ENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEG 198 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~c~~ 198 (412)
...++.....|++|++|+|++|.+.... ....+++|++|+++++.++ ...+..++.+||+|++|++++|..
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1222233345677777777776653321 2345677777777666653 456666677777777777777643
Q ss_pred ccee-eccCCCCccEEEEeeCC-----------------------------CCceEEEecCcccEEEeeeeec--cceEE
Q 015171 199 LESL-DLVNLSNLKEIILVNTS-----------------------------DIKRVEIKTSNVNALAIHQTYL--FPIEV 246 (412)
Q Consensus 199 ~~~~-~i~~l~~L~~L~i~~c~-----------------------------~l~~~~~~~p~L~~L~l~~~~~--~~~~~ 246 (412)
.... .+..+++|+.|.+..+. .+..+...+++|++|+++++.. .....
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 2100 11123455555554220 1111111244555555555441 11111
Q ss_pred eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc----------ccccccc-----cccccccceEEEecCccc
Q 015171 247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK----------CHKLTSV-----RISSPCLKTLILECCDKL 311 (412)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~l-----~~~~~~L~~L~l~~c~~l 311 (412)
.+..+++|++|+++ +.+.+..+..+...+++|++|++.+ |..++.. ...+++|++|++ +|..+
T Consensus 313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 23455566666555 3344444444455556666666663 4333321 123556666666 33332
Q ss_pred c-----eeeccCCCeeeEEEecce---e-----------eecccccccceEEEEE
Q 015171 312 I-----QVEIETPNLSIFKYHGDL---I-----------SFSSNALSLSETSLCF 347 (412)
Q Consensus 312 ~-----~~~~~~~~L~~l~~~~~~---~-----------~~l~~~~~L~~l~i~~ 347 (412)
. .+...+++|+.|.+.+.. . ..+.++++|++|.++.
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 1 112235667777665321 1 1244567777777754
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=195.57 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=129.0
Q ss_pred CcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCeeeeecccCCCchhhHHHHHHHHHHhccccCCCCcee
Q 015171 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~ 87 (412)
+...++.||||++.+||+||+.+|+++++.|||+|+++... |. .++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~ 51 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT 51 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence 34568999999999999999999999999999999987532 11 1111
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC---CCCccCcccc
Q 015171 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLR 164 (412)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~ 164 (412)
+.++... .. +..+.....++++.+++..... ...+..++.+++|++|++++|.+... .....+++|+
T Consensus 52 l~l~~~~----~~----~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 52 LDLTGKN----LH----PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp EECTTCB----CC----HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred ecccccc----CC----HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 1111000 01 1223333445777777665321 12333355677888888887765421 3355677778
Q ss_pred eeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee----eccCCCCccEEEEeeCCCCceE-----EEecC-cccEE
Q 015171 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVNAL 234 (412)
Q Consensus 165 ~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~----~i~~l~~L~~L~i~~c~~l~~~-----~~~~p-~L~~L 234 (412)
+|+++++.+++..... +..+++|++|++++|..+... .+..+++|+.|++++|..+... ...+| +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 8887777766555544 455777777777777544321 1233566666666666333221 11334 55555
Q ss_pred Eeeeeec----cceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccc
Q 015171 235 AIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 235 ~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
+++++.. ..+...+..+++|++|+++++. +.+..+. .+..+++|++|++++|
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence 5544420 1111223344555555554444 3322222 2234455555555544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=147.88 Aligned_cols=203 Identities=20% Similarity=0.216 Sum_probs=129.6
Q ss_pred HHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCC
Q 015171 107 CLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGC 185 (412)
Q Consensus 107 ~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~ 185 (412)
.+......+++.|++...... .+|..++.+++|++|+++++.+... .....+++|++|+|+++.+. .+..-+..+
T Consensus 74 ~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l 149 (328)
T 4fcg_A 74 LLEDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASL 149 (328)
T ss_dssp HHHHHTSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGC
T ss_pred HHhcccccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcC
Confidence 344444568999999985543 7898899999999999999987633 45778999999999999875 333346789
Q ss_pred CCccEEEeeccCCcceee-----------ccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCC
Q 015171 186 PLIEYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSC 251 (412)
Q Consensus 186 p~Le~L~l~~c~~~~~~~-----------i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~ 251 (412)
++|++|++++|.....+. +..+++|+.|++++| .+..++ ..+++|++|+++++....++..+..+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 999999999987654331 112566777777666 222221 13456666666666533333345566
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE 315 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~ 315 (412)
++|++|++++|.+... ++..+..+++|+.|++++|...+.++. ..++|+.|+|++|.....++
T Consensus 229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 6666666666554432 222344566666666666655544443 34556666666666554433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=136.33 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=158.1
Q ss_pred CCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEE
Q 015171 138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~ 214 (412)
..++++|+++++.+... .....+++|++|+|+++.+. .+...+..+++|++|++++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 47899999999887644 45677999999999999875 23334578899999999998654 22 355679999999
Q ss_pred EeeCCCCceEE------------EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 215 LVNTSDIKRVE------------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 215 i~~c~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+++|.....++ ..+++|+.|+++++....++..+..+++|++|+++++.+.. +...+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 99984333332 13899999999999844555668889999999999998875 34446789999999
Q ss_pred ecccccccccccc---cccccceEEEecCcccceee---ccCCCeeeEEEeccee-----eecccccccceEEEE
Q 015171 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLC 346 (412)
Q Consensus 283 ~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~ 346 (412)
++++|...+.++. .+++|+.|++++|.....++ ..+++|+.|.+.++.. ..+.++++|+.+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 9999877766654 56889999999998875544 3567888998888654 567777888888774
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=135.92 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .++. +..+++|++|++++|.+...+....+++|++|+++++.+.+.. . +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred CCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEEC
Confidence 35666666553222 2333 5556666666666665554444556666666666666552211 1 455666666666
Q ss_pred eccCCccee-eccCCCCccEEEEeeCC--CCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 194 RSCEGLESL-DLVNLSNLKEIILVNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 194 ~~c~~~~~~-~i~~l~~L~~L~i~~c~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
++|.....+ .+..+++|+.|++.+|. .... ...+++|+.|+++++...... .+..+++|+.|+++++.+....
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-- 215 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT-- 215 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG--
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCc--
Confidence 666443322 23345566666666551 1111 113455666666555421111 1445555555555555544311
Q ss_pred HhhcCCCCccEEecccccccccc--cccccccceEEEecCcccc-eeeccCCCeeeEEEeccee---eecccccccceEE
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV--RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETS 344 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~~---~~l~~~~~L~~l~ 344 (412)
. +..+++|+.|++++|.. +.+ ...+++|+.|++++|.... ......++|+.+.+.++.. ..+..+++|++|.
T Consensus 216 ~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293 (347)
T ss_dssp G-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred h-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence 1 34455566666655421 111 1234555555555553221 1112344555555555433 2344455566666
Q ss_pred EEEe
Q 015171 345 LCFS 348 (412)
Q Consensus 345 i~~~ 348 (412)
+..+
T Consensus 294 L~~n 297 (347)
T 4fmz_A 294 LNNN 297 (347)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-14 Score=130.19 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=170.2
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++++|++..+... .+|. +..+++|++|++++|.+...+....+++|++|+++++.+.+- . -+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~--~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVA--SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccc--cchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence 468999999875433 3443 777999999999999887665588999999999999988432 2 267899999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
+++|.......+..+++|+.|++++|.....+. ..+++|++|+++++..... ..+..+++|++|+++++.+... .
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~ 193 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDI--S 193 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECTTSCCCCC--G
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hhhccCCCCCEEEccCCccccc--c
Confidence 999865443346678999999999984444332 2578999999998873221 1278899999999999988762 2
Q ss_pred HhhcCCCCccEEecccccccccc-cccccccceEEEecCcccc-eeeccCCCeeeEEEeccee---eecccccccceEEE
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSL 345 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~~---~~l~~~~~L~~l~i 345 (412)
. +..+++|+.|+++++...... ...+++|+.|++++|.... .....+++|+.+.+.++.. ..+..+++|+++.+
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 2 667899999999986332221 2356899999999986542 1134678999999988765 45677899999999
Q ss_pred EEe
Q 015171 346 CFS 348 (412)
Q Consensus 346 ~~~ 348 (412)
..+
T Consensus 273 ~~n 275 (347)
T 4fmz_A 273 GSN 275 (347)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=147.51 Aligned_cols=230 Identities=18% Similarity=0.119 Sum_probs=108.4
Q ss_pred CceEEEEEeCCCccccCCc--cccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHH--HHHcCCCC
Q 015171 115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCPL 187 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~--~l~~~~p~ 187 (412)
++++|+++.+... ..+|. .+.++++|++|++++|.+... .....+++|++|+++++.++..... ..+.++++
T Consensus 101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 4555555542211 12333 455555555555555544322 1114555566666555554221111 12445556
Q ss_pred ccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceE--EEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeecccc
Q 015171 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV--EIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 188 Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~--~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
|++|++++|..........+++|+.|++++|.-...+ ...+++|++|+++++. ....+..+..+++|++|+++++.+
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 6666665554333333344556666666555111101 1134556666665554 112223445556666666655554
Q ss_pred chHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccce---eeccCCCeeeEEEeccee------
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI------ 331 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~------ 331 (412)
.... +. ..+++|++|+++++.....++. .+++|++|++++|..... ....+++|+.|.+.++..
T Consensus 260 ~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 260 VGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp EESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred cCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 4311 11 1455666666665433222222 235666666666643221 123455666666655443
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.+..+
T Consensus 337 ~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp HHHTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCEEeCcCC
Confidence 12556666777766544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-14 Score=140.59 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCC-CccccCCccccCCCCeeEEEEeceeecCC------C
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP------S 155 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~------~ 155 (412)
+.++.+.++... .....+..... ..+++++|++..+. .....++....+|++|++|++++|.+... .
T Consensus 105 ~~L~~L~L~~~~----~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMV----VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCB----CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcE----EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 467777776432 11112211111 24688999888752 22223444455788999999998876432 2
Q ss_pred CCccCcccceeEeeeEE--eCHHHHHHHHcCCCCccEEEeeccC
Q 015171 156 ENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 156 ~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....+++|++|+++++. +++..+..+...||+|++|++++|.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 23467799999998886 4677788887888999999998873
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-14 Score=146.65 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=74.9
Q ss_pred cCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc---ccccccc---------cccccccceEEEecCcc-cc---
Q 015171 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK---CHKLTSV---------RISSPCLKTLILECCDK-LI--- 312 (412)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~l---------~~~~~~L~~L~l~~c~~-l~--- 312 (412)
..+++|++|++.++.+.+..+..+...+++|++|++.+ |..++.. ...+++|++|+++.|.+ +.
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 45777888888777777766666666678888888863 3344432 22467888888877664 11
Q ss_pred --eeeccCCCeeeEEEeccee------eecccccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 313 --QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 313 --~~~~~~~~L~~l~~~~~~~------~~l~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
.+...+++|+.|.+.++.. .++..+++|++|.|..+.- .........+.+..++.+.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC---BHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC---cHHHHHHHHHhcCccCeeE
Confidence 2223467888888876543 3556778888888876631 1222333444455554443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-14 Score=144.10 Aligned_cols=216 Identities=17% Similarity=0.111 Sum_probs=99.3
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee----e
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----D 203 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~----~ 203 (412)
.+|..+..+++|++|+++++.+... .....+++|++|+++++.+........+..+++|++|++++|...... .
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 4444444445555555555443321 233444555555555443311111111334555555555554332211 2
Q ss_pred ccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeeccccchHHHHHhhcCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
+..+++|+.|++++| .+..+. ..+++|++|+++++.... ....+..+++|+.|+++++.+... ....+..++
T Consensus 372 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLP 449 (606)
T ss_dssp TTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCT
T ss_pred cccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCCC
Confidence 333455555555554 111111 124556666665554111 112245566666666666655442 123345566
Q ss_pred CccEEeccccccccc------ccccccccceEEEecCccccee---eccCCCeeeEEEeccee-----eecccccccceE
Q 015171 278 LLEYLSMTKCHKLTS------VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSET 343 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~------l~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l 343 (412)
+|+.|+++++...+. ....+++|+.|++++|...... ...+++|+.+.+.++.. ..+.++++| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 666666666532221 1123456677777666443211 12445666666665543 344455555 55
Q ss_pred EEEEe
Q 015171 344 SLCFS 348 (412)
Q Consensus 344 ~i~~~ 348 (412)
.+..+
T Consensus 529 ~L~~N 533 (606)
T 3t6q_A 529 NLASN 533 (606)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 55433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-14 Score=131.90 Aligned_cols=221 Identities=18% Similarity=0.237 Sum_probs=163.5
Q ss_pred HHHHHHHHhC-CceEEEEEeCCCccccCCccccCC--CCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHH
Q 015171 105 GRCLGLAIES-EVKELVLVHWRSERRNLPEIIFYV--ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIAS 180 (412)
Q Consensus 105 ~~~l~~~~~~-~l~~L~l~~~~~~~~~lp~~~~~~--~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ 180 (412)
.+|-..+..+ ..+.++++..... |..+... ++++.|+++++.+... +....+++|++|+++++.+++..+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 4566555433 4788887753221 3334444 7899999999877654 55668999999999999998887888
Q ss_pred HHcCCCCccEEEeeccCCcce--eeccCCCCccEEEEeeCCCCce--E---EEecCcccEEEeeee-ecc--ceEEeccC
Q 015171 181 LISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKR--V---EIKTSNVNALAIHQT-YLF--PIEVNVSS 250 (412)
Q Consensus 181 l~~~~p~Le~L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~--~---~~~~p~L~~L~l~~~-~~~--~~~~~~~~ 250 (412)
.+..||+|++|++++|..... -.+..+++|+.|++++|..+.. + ...+++|++|+++++ ... .+...+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 899999999999999964321 1345689999999999854442 2 236799999999998 421 13344678
Q ss_pred CC-CCcEEEeecc--ccchHHHHHhhcCCCCccEEeccccccccc--cc--ccccccceEEEecCcccce----eeccCC
Q 015171 251 CG-NLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDKLIQ----VEIETP 319 (412)
Q Consensus 251 ~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~--~~~~~L~~L~l~~c~~l~~----~~~~~~ 319 (412)
++ +|++|+++++ .+.+..+...+..+++|+.|++++|..++. +. ...++|++|++++|..+.. ....++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 89 9999999998 567666777788899999999999875432 11 2568999999999975432 134578
Q ss_pred CeeeEEEecc
Q 015171 320 NLSIFKYHGD 329 (412)
Q Consensus 320 ~L~~l~~~~~ 329 (412)
+|+.|.+.|+
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 8888888775
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.4e-14 Score=128.56 Aligned_cols=230 Identities=14% Similarity=0.051 Sum_probs=121.3
Q ss_pred CceEEEEEeCCCc-cccCCccccCCCCeeEEEEec-eeec--CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++|+++..... ...+|..+.++++|++|++++ +.+. .+.....+++|++|+++++.+... +...+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence 5666666653322 124666666777777777774 4332 223456677777777777665311 1122455677777
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCCCceEEE---ecC-cccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI---KTS-NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~---~~p-~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|.....+ .+..+++|+.|+++++.--..++. ..+ +|+.|+++++. ....+..+..++ |+.|+++++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 777766433211 234456777777766521111111 233 67777776665 112233344454 7777777766
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccccc--ccccccceEEEecCcccceee---ccCCCeeeEEEeccee----eec
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFS 334 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~----~~l 334 (412)
+... ....+..+++|+.|+++++.....++ ...++|++|+++++.....++ ..+++|+.+.+.++.. ...
T Consensus 209 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6542 23345566777777777653322222 234667777777665432222 2345566665555433 111
Q ss_pred ccccccceEEEEE
Q 015171 335 SNALSLSETSLCF 347 (412)
Q Consensus 335 ~~~~~L~~l~i~~ 347 (412)
.++++|+.+.+..
T Consensus 288 ~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 288 GNLQRFDVSAYAN 300 (313)
T ss_dssp TTGGGSCGGGTCS
T ss_pred ccccccChHHhcC
Confidence 3445555555533
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-13 Score=130.95 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=68.9
Q ss_pred cccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc-c---ccccccceEE
Q 015171 230 NVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-R---ISSPCLKTLI 304 (412)
Q Consensus 230 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~---~~~~~L~~L~ 304 (412)
+|+.|+++++.... ....+..+++|++|+++++.+... ....+..+++|+.|+++++.. +.+ + ..+++|+.|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEE
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEE
Confidence 45555555544111 122355667777777777766542 122355677778888777533 222 1 2456778888
Q ss_pred EecCcccce---eeccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 305 LECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 305 l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
+++|..... ....+++|+.+.+.+... ..+..+++|++|.++.+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 877754322 123456777777777654 34566778888888666
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-13 Score=140.86 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred cCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
..+++|++|++++|.+... +....+++|++|+++++.+.... ...+..+++|++|++++|..........+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 5677888888888766543 44677888888888888775333 334678888888888888654433333567888888
Q ss_pred EeeCC---CCceEEE-ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 215 LVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 215 i~~c~---~l~~~~~-~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+++|. .+..... .+++|++|+++++. ....+..++.+++|++|+++++.+........+..+++|+.|+++++..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88771 1111111 24788888888876 2233455677888888888888776432333356678888888887643
Q ss_pred cccccc---cc-cccceEEEecCc
Q 015171 290 LTSVRI---SS-PCLKTLILECCD 309 (412)
Q Consensus 290 l~~l~~---~~-~~L~~L~l~~c~ 309 (412)
...++. .. ++|+.|++++|.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSE
T ss_pred CccccHHHHhhhcCCcEEEccCCC
Confidence 322222 11 255555555543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-13 Score=128.86 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~ 173 (412)
+++++|+++.+... .++. +..+++|++|++++|.+...+....+++|++|+++++.+
T Consensus 90 ~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 90 TKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 146 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred ccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCcc
Confidence 46666666653222 2333 556666666666666554444456666666666666666
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=135.41 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=99.0
Q ss_pred ccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
+..+++|+.|+++++.+...+....+++|++|+++++.++ .+..+ .++.|++|++++|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 3344556666666555443344445555666666555541 11121 4555555555555444443444445555555
Q ss_pred EeeCCCCceEE------EecCcccEEEeeeeeccceEEec-------------------------cCCCCCcEEEeeccc
Q 015171 215 LVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNV-------------------------SSCGNLKCLKFDFLP 263 (412)
Q Consensus 215 i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~ 263 (412)
++++ .+..+. ..+++|++|+++++........+ ..+++|+.|+++++.
T Consensus 357 ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 5544 111111 12344444444444311112233 344555555555554
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccc-cc---ccccccceEEEecCccccee---eccCCCeeeEEEeccee-----
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS-VR---ISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----- 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~---~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~----- 331 (412)
+... ....+..+++|+.|+++++..... ++ ..+++|+.|++++|...... ...+++|+.+.+.++..
T Consensus 436 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 436 TKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 4332 122234455566666655432221 11 23456666666666433211 12445666666666543
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.++.+
T Consensus 515 ~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GGTTTCTTCCEEECTTS
T ss_pred HHccCCCcCCEEECCCC
Confidence 34556667777776444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=126.11 Aligned_cols=235 Identities=18% Similarity=0.155 Sum_probs=126.4
Q ss_pred ccCCccccCCCCeeEEEEeceeecCCC--CCccCcccceeEeeeEEeCHHH-HHHHHcCCCCccEEEeeccCCcce-eec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LDL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~p~Le~L~l~~c~~~~~-~~i 204 (412)
..+|..+. ++|++|+++++.+...+ .+..+++|+.|+++++.++... .......+++|++|++++|..... ..+
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 34454332 56777777777654332 2456777777777776653211 011123567777777777643321 124
Q ss_pred cCCCCccEEEEeeC--CCCce--EEEecCcccEEEeeeeecc-ceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCc
Q 015171 205 VNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL 279 (412)
Q Consensus 205 ~~l~~L~~L~i~~c--~~l~~--~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 279 (412)
..+++|+.|+++++ ..+.. ....+++|++|+++++... .....+..+++|++|+++++.+.....+..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 44677777777665 11111 1113567777777766511 1122345667777777777766543334445566777
Q ss_pred cEEeccccccccccc---ccccccceEEEecCcccc--e-eeccCCCeeeEEEeccee-----eecccc-cccceEEEEE
Q 015171 280 EYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--Q-VEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCF 347 (412)
Q Consensus 280 ~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~--~-~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i~~ 347 (412)
+.|+++++......+ ...++|+.|+++++.... . ....+++|+.+.+.+... ..+... ++|+.+.+..
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 777777753222111 134667777777765432 1 112456677777766544 234444 4788888866
Q ss_pred eccchh-hHHHHHHHHHhh
Q 015171 348 SSHLMV-NIEWVVEYFEIL 365 (412)
Q Consensus 348 ~~~~~~-~~~~~~~~~~~l 365 (412)
+.-.+. ...++.+.++..
T Consensus 258 N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 258 NDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCEECSGGGHHHHHHHHHT
T ss_pred CCeecccChHHHHHHHHhh
Confidence 632222 334455544443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-13 Score=128.61 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .++ .+..+++|++|++.+ ..........+++|+.|+++++.+.+-. .+..+++|++|++
T Consensus 134 ~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l 206 (466)
T 1o6v_A 134 TNLNRLELSSNTIS--DIS-ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIA 206 (466)
T ss_dssp TTCSEEEEEEEEEC--CCG-GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred CCCCEEECCCCccC--CCh-hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEe
Confidence 57888888774322 122 245556666666643 2222223445556666666555542211 1344555555555
Q ss_pred eccCCcceeeccCCCCccEEEEeeC
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
++|.......+..+++|+.|++++|
T Consensus 207 ~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 207 TNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCcccccccccccCCCCEEECCCC
Confidence 5554322222333445555555544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=123.51 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=169.4
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .+|. .+..+++|++|+++++.+... ..+..+++|++|+++++.++.-. ...+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 47999998875433 4554 577899999999999876533 45778999999999999884321 233678999999
Q ss_pred EEeeccCCcce---eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeecc
Q 015171 191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFL 262 (412)
Q Consensus 191 L~l~~c~~~~~---~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 262 (412)
|++++|....- -.+..+++|+.|++++|..+..+.. .+++|++|+++++.... ....+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 99999854321 1345679999999999865555532 46789999999887222 2345678899999999999
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc-------ccccccceEEEecCcccc----e---eeccCCCeeeEEEec
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-------ISSPCLKTLILECCDKLI----Q---VEIETPNLSIFKYHG 328 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-------~~~~~L~~L~l~~c~~l~----~---~~~~~~~L~~l~~~~ 328 (412)
.+... .......+++|+.|+++++.. +.+. ...+.++.+++..+.... . ....+++|+.+.+.+
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ccccc-hhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 87652 233455689999999998632 2211 124557777777764321 1 123567888888887
Q ss_pred cee-----eecccccccceEEEEEeccch--hhHHHHHHHHHh
Q 015171 329 DLI-----SFSSNALSLSETSLCFSSHLM--VNIEWVVEYFEI 364 (412)
Q Consensus 329 ~~~-----~~l~~~~~L~~l~i~~~~~~~--~~~~~~~~~~~~ 364 (412)
+.. ..+.++++|+++.+..+...+ ...+++......
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 765 335778899999998773322 234454444443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-13 Score=137.15 Aligned_cols=216 Identities=17% Similarity=0.096 Sum_probs=129.8
Q ss_pred CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHH-HHHHHcCCCCccEEEeeccCCcce-eeccCCCCccEEE
Q 015171 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEII 214 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~l~~L~~L~ 214 (412)
.+++|++|+++++..........+++|+.|+++++.+.... ....+..+++|++|++++|..... -.+..+++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 34444444444432211123334555555555555442110 112245566677776666643211 1234467777777
Q ss_pred EeeC--CCCc--eEEEecCcccEEEeeeeec-cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 215 LVNT--SDIK--RVEIKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 215 i~~c--~~l~--~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+++| .... .....+++|++|+++++.. ...+..+..+++|++|+++++.+.+..++..+..+++|+.|++++|..
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 7766 1111 0112467888888887762 212334678899999999999887643455677889999999999744
Q ss_pred ccccc---ccccccceEEEecCcccceee---ccCCCeeeEEEeccee----eeccccc-ccceEEEEEeccch
Q 015171 290 LTSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFSSHLM 352 (412)
Q Consensus 290 l~~l~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~----~~l~~~~-~L~~l~i~~~~~~~ 352 (412)
.+..+ ...++|+.|++++|......+ ..+++|+.+.+.++.. ..+...+ +|+.+.+..+...|
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 33322 256889999999996543322 3467899998888765 3355665 69999998774333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=130.04 Aligned_cols=230 Identities=18% Similarity=0.101 Sum_probs=133.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
+++++|+++.+... ...|..+.++++|++|+|+++.+... ..+..+++|++|+|+++.+.... ...+..+++|++|
T Consensus 56 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence 46777776653221 12244556677777777777665433 23456777777777766552211 1224566777777
Q ss_pred EeeccCCcce--eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccce-EEeccCCCCCcEEEeecccc
Q 015171 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 192 ~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 264 (412)
+++++..... -.+..+++|+.|++.+| .+..+. ..+++|+.|+++++..... ...+..+++|+.|+++++..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 7776643221 12444677777777776 222222 1456777777776652211 12456677777777776654
Q ss_pred chHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccc---eeeccCCCeeeEEEeccee-----e
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S 332 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~ 332 (412)
....... .....+|+.|+++++. ++.++ ..+++|+.|+++++..-. .....+++|+.|.+.+... .
T Consensus 213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 3322112 2223478888887753 33333 245788888888876432 1223567888888877654 3
Q ss_pred ecccccccceEEEEEe
Q 015171 333 FSSNALSLSETSLCFS 348 (412)
Q Consensus 333 ~l~~~~~L~~l~i~~~ 348 (412)
.+.++++|+.|.++.+
T Consensus 291 ~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN 306 (477)
T ss_dssp TBTTCTTCCEEECCSS
T ss_pred HhcCcccCCEEECCCC
Confidence 5667889999998665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=125.33 Aligned_cols=218 Identities=15% Similarity=0.114 Sum_probs=129.1
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+.... +| +..+++|++|++++|.+...+ ...+++|++|+++++.++.- . +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 466666666543222 22 455666777777766654432 55666777777776666321 1 456677777777
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHh
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (412)
++|... .+.+..+++|+.|++++|..+..+.+ .+++|+.|+++++....+ .+..+++|+.|+++++.+... -
T Consensus 135 ~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~----~ 207 (457)
T 3bz5_A 135 ARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL----D 207 (457)
T ss_dssp TTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCC----C
T ss_pred CCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCee----c
Confidence 666432 23455567777777776644444433 457778888777763322 266778888888887777653 1
Q ss_pred hcCCCCccEEecccccccccccc-cccccceEEEecCcccceeeccCCCeeeEEEeccee-------------eeccccc
Q 015171 273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-------------SFSSNAL 338 (412)
Q Consensus 273 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~-------------~~l~~~~ 338 (412)
+..+++|+.|+++++. ++.++. .+++|+.|+++++..-......+++|+.+.+.+... ....+++
T Consensus 208 l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 5567888888888753 233333 557788888887754322223445555554332211 2344567
Q ss_pred ccceEEEEEe
Q 015171 339 SLSETSLCFS 348 (412)
Q Consensus 339 ~L~~l~i~~~ 348 (412)
+|+.|.++.+
T Consensus 287 ~L~~L~Ls~n 296 (457)
T 3bz5_A 287 KIKELDVTHN 296 (457)
T ss_dssp TCCCCCCTTC
T ss_pred cCCEEECCCC
Confidence 7777777544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=123.22 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=44.2
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee---ccCCCe
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNL 321 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L 321 (412)
+..+++|++|+++++.+... ....+..+++|+.|+++++. ++.++. ..++|+.|++++|... .++ ..+++|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred HcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 34445555555555544431 12223445555555555532 222221 3455555555555321 111 123455
Q ss_pred eeEEEeccee--eecccccccceEEEEEe
Q 015171 322 SIFKYHGDLI--SFSSNALSLSETSLCFS 348 (412)
Q Consensus 322 ~~l~~~~~~~--~~l~~~~~L~~l~i~~~ 348 (412)
+.|.+.++.. ..+...++|++|.+..+
T Consensus 321 ~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CEEECCCCccceeCchhhccCCEEEcCCC
Confidence 5555555443 23444555666666444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=131.66 Aligned_cols=230 Identities=20% Similarity=0.172 Sum_probs=165.8
Q ss_pred CceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++.+++..+. ...++.. +..+++|++|+++++.+... .....+++|++|+++++.+..... ..+..+++|++|+
T Consensus 255 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred ceeEEEeecCc--cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence 45555555432 2344443 66789999999999877543 556789999999999998743222 2357899999999
Q ss_pred eeccCCccee---eccCCCCccEEEEeeCCCCceEE------EecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeecc
Q 015171 193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFL 262 (412)
Q Consensus 193 l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 262 (412)
+++|.....+ .+..+++|+.|+++++ .+..+. ..+++|++|+++++.... ....+..+++|++|+++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9998654333 2556799999999987 333333 156899999999886221 1235678899999999999
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc------eeeccCCCeeeEEEeccee--
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI------QVEIETPNLSIFKYHGDLI-- 331 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~------~~~~~~~~L~~l~~~~~~~-- 331 (412)
.+........+..+++|+.|+++++......+ ...++|+.|++++|.... .....+++|+.|.+.++..
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 87764334446788999999999975433322 257899999999997543 1234578899999988765
Q ss_pred ---eecccccccceEEEEEe
Q 015171 332 ---SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ---~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.++.+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS
T ss_pred cChhhhccccCCCEEECCCC
Confidence 35678899999999766
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=131.09 Aligned_cols=226 Identities=17% Similarity=0.132 Sum_probs=138.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.+++..+.. ..+|..+..+ +|++|++++|.+...+. ..+++|+.|++.++....... ...+|+|++|++
T Consensus 282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEEC
T ss_pred CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccc---cccCCCCCEEeC
Confidence 4666676665432 2466666666 77777777776653222 467777777777766521111 156777888888
Q ss_pred eccCCcce----eeccCCCCccEEEEeeCCCCceE---EEecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeecccc
Q 015171 194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRV---EIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 194 ~~c~~~~~----~~i~~l~~L~~L~i~~c~~l~~~---~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 264 (412)
++|..... ..+..+++|+.|++++| .+..+ ...+++|++|+++++.... ....+..+++|++|+++++.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 77754321 12345677888888776 22222 2256778888887765211 112456778888888887776
Q ss_pred chHHHHHhhcCCCCccEEeccccccc-cccc---ccccccceEEEecCcccceee---ccCCCeeeEEEeccee-----e
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKL-TSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----S 332 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~ 332 (412)
... ....+..+++|+.|++++|... ..++ ..+++|+.|++++|......+ ..+++|+.+.+.++.. .
T Consensus 434 ~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 434 RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp EEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 543 2334566788888888876533 1232 255778888888875532212 3456788888777654 3
Q ss_pred ecccccccceEEEEEe
Q 015171 333 FSSNALSLSETSLCFS 348 (412)
Q Consensus 333 ~l~~~~~L~~l~i~~~ 348 (412)
.+.++++|+++.+..+
T Consensus 513 ~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhhcccCCcEEEecCC
Confidence 4567788888888665
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=129.51 Aligned_cols=213 Identities=13% Similarity=0.123 Sum_probs=158.6
Q ss_pred cCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCC
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLS 208 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~ 208 (412)
..|..+..+++|++|+++++.+... .....+ +|++|+++++.+. .+. ...+++|++|.+.++..........++
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFP--TLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCC--BCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccC--cccccccCEEeCcCCccccccccccCC
Confidence 4556667789999999999877543 445566 9999999998874 121 147899999999998766555445679
Q ss_pred CccEEEEeeCCCCceEE------EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 209 NLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 209 ~L~~L~i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+|+.|++++| .+..+. ..+++|++|+++++........+..+++|++|+++++.+........+..+++|+.|
T Consensus 348 ~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 9999999987 333332 156899999999987444444588899999999999887663333456788999999
Q ss_pred eccccccccccc---ccccccceEEEecCccc-cee---eccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 283 SMTKCHKLTSVR---ISSPCLKTLILECCDKL-IQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 283 ~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l-~~~---~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
++++|......+ ..+++|+.|++++|... ..+ ...+++|+.|.+.++.. ..+.++++|++|.+..+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 999985443333 35789999999999754 222 34678899999988765 35678899999999765
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=124.15 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=170.1
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcc
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS 162 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 162 (412)
..++.+.++..... . + .....+++++|+++.+.... +| +..+++|++|+++++.+...+ ...+++
T Consensus 64 ~~L~~L~Ls~n~l~---~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTSNNIT---T---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD-VSQNPL 128 (457)
T ss_dssp TTCSEEECCSSCCS---C---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC-CTTCTT
T ss_pred CCCCEEEccCCcCC---e---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec-CCCCCc
Confidence 56777776644321 1 1 11223589999998855433 33 678899999999999876543 788999
Q ss_pred cceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeec
Q 015171 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL 241 (412)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~ 241 (412)
|+.|+++++.++.- . +..+++|++|++++|.....+.+..+++|+.|+++++ .+..+.+ .+++|+.|+++++..
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence 99999999988432 1 6789999999999998777777777899999999988 3333333 578999999998873
Q ss_pred cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc-cccc----------ccceEEEecCcc
Q 015171 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-ISSP----------CLKTLILECCDK 310 (412)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~----------~L~~L~l~~c~~ 310 (412)
... .++.+++|+.|+++++.+.. ++ +..+++|+.|+++++. ++.++ ..++ +|+.|++++|..
T Consensus 204 ~~~--~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 204 TKL--DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp SCC--CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred Cee--ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 332 47889999999999999887 33 6678999999999853 22222 2334 455666666665
Q ss_pred cceeec-cCCCeeeEEEeccee-------------eecccccccceEEEEEe
Q 015171 311 LIQVEI-ETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 311 l~~~~~-~~~~L~~l~~~~~~~-------------~~l~~~~~L~~l~i~~~ 348 (412)
...++. .+++|+.+.+.++.. .-+.+.++|+.|.+..+
T Consensus 277 ~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 554443 458899998877643 12344567777777544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-12 Score=120.87 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=163.9
Q ss_pred CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCCCC--CccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSE--NVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .+| ..+..+++|++|+++++.+...+. +..+++|++|+++++.+.... ...+..+++|++
T Consensus 93 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred CCcCEEECCCCCCC--cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence 58999999875432 344 446789999999999998765432 578999999999998774221 123578899999
Q ss_pred EEeeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 191 LEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 191 L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
|++++|.. ..+.+..+++|+.|+++++ .+..+. ..++|++|+++++..... .....++|+.|+++++.+.+.
T Consensus 170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~l~~~--- 241 (390)
T 3o6n_A 170 LQLSSNRL-THVDLSLIPSLFHANVSYN-LLSTLA-IPIAVEELDASHNSINVV--RGPVNVELTILKLQHNNLTDT--- 241 (390)
T ss_dssp EECCSSCC-SBCCGGGCTTCSEEECCSS-CCSEEE-CCSSCSEEECCSSCCCEE--ECCCCSSCCEEECCSSCCCCC---
T ss_pred EECCCCcC-Cccccccccccceeecccc-cccccC-CCCcceEEECCCCeeeec--cccccccccEEECCCCCCccc---
Confidence 99998854 3345666799999999887 444443 356899999998873332 224468999999999988773
Q ss_pred HhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLS 341 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~ 341 (412)
..+..+++|+.|+++++......+ ...++|+.|+++++..-. ......|+|+.|.+.++.. ..+..+++|+
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 346789999999999974332222 256889999999986432 1223578999999988765 3455678999
Q ss_pred eEEEEEe
Q 015171 342 ETSLCFS 348 (412)
Q Consensus 342 ~l~i~~~ 348 (412)
+|.+..+
T Consensus 322 ~L~L~~N 328 (390)
T 3o6n_A 322 NLYLDHN 328 (390)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999766
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=125.87 Aligned_cols=210 Identities=17% Similarity=0.043 Sum_probs=125.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .+|. .+++|++|+|++|.+...+. .+++|++|+++++.++. +-...++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence 57888888765432 4555 45778888888877654333 67888888888776622 1114567788877
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCC--------------------C
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCG--------------------N 253 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~--------------------~ 253 (412)
++|... .+.. .+++|+.|++++| .+..++...++|+.|.++++....++ ..++ +
T Consensus 129 ~~N~l~-~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCC-cCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 776432 2211 1367777777766 22222222344445444444311111 2234 4
Q ss_pred CcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEeccee--
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-- 331 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~-- 331 (412)
|+.|+++++.+.. +...+++|+.|+++++ .++.++..+++|+.|++++|. +..++...++|+.|.+.++..
T Consensus 203 L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 203 LYKLWAYNNRLTS-----LPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CCEEECCSSCCSS-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCS
T ss_pred hhEEECcCCcccc-----cCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCc
Confidence 4444444444332 1123467777777765 445566666788888888873 444555677888888877765
Q ss_pred --eecccccccceEEEEEe
Q 015171 332 --SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 --~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|+.|.++.+
T Consensus 276 lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCGGGGGSCTTCEEECCSC
T ss_pred CCHHHhhccccCEEEecCC
Confidence 45677889999999766
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=119.04 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=117.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... ...|..+..+++|++|+++++.+...+. ..+++|++|+++++.+.... ...+..+++|++|++
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence 47777777764322 1225556677888888888776643222 22367888888777663222 223567888888888
Q ss_pred eccCCcc----eeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchH
Q 015171 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 194 ~~c~~~~----~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++.... ...+..+++|+.|+++++ .+..++. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 8775421 113444678888888776 2222221 236788888877762221 23466778888888888776652
Q ss_pred HHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcc
Q 015171 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (412)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~ 310 (412)
. ...+..+++|+.|+++++. +..++. ..++|+.|+++++..
T Consensus 232 ~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 232 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred C-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC
Confidence 1 2235567888888888763 334433 456788888887654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=124.68 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
+++.|+++.+.... ..+..+.++++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|++|+
T Consensus 65 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 65 NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELW 142 (440)
T ss_dssp TCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEE
T ss_pred CCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceee
Confidence 45555555432211 1122344555566666655544322 23445555666666555442110 11234455566666
Q ss_pred eeccCCcce--eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 193 IRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 193 l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
++++..... ..+..+++|+.|++.+|..+..+.. .+++|++|+++++....++ .+..+++|+.|+++++.+..
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence 555532211 1123345555555555544433322 2445555555555422111 24445555555555555443
Q ss_pred HHHHHhhcCCCCccEEecccc
Q 015171 267 EWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c 287 (412)
. ....+..+++|+.|+++++
T Consensus 222 ~-~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 222 I-RPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp E-CTTTTTTCTTCCEEECTTC
T ss_pred c-ChhhhccCccCCEEECCCC
Confidence 1 1223344555555555553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=126.73 Aligned_cols=229 Identities=17% Similarity=0.124 Sum_probs=141.0
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.+.. ..+|.. +..+++|++|+++++.+... ..+..+++|+.|+++++.+..... ..+..+++|++
T Consensus 80 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 156 (477)
T 2id5_A 80 FNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ 156 (477)
T ss_dssp TTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred ccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence 4788888876432 355554 45678888888888765432 456678888888888766532111 12456788888
Q ss_pred EEeeccCCcce--eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|..... -.+..+++|+.|++.++ .+..+. ..+++|+.|+++++. ............+|++|+++++.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 88887744321 12445678888888776 222221 145778888887765 11112222334578888888777
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI----- 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~----- 331 (412)
+... ....+..+++|+.|+++++. +..+. ...++|+.|+++++..... ....+++|+.|.+.++..
T Consensus 236 l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 236 LTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CCSC-CHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred cccc-CHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 6642 12335667888888888753 22222 2456788888877754321 123456777777776654
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.+..+
T Consensus 314 ~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 314 SVFHSVGNLETLILDSN 330 (477)
T ss_dssp GGBSCGGGCCEEECCSS
T ss_pred hHcCCCcccCEEEccCC
Confidence 34567788888888666
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-13 Score=122.31 Aligned_cols=194 Identities=20% Similarity=0.153 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHh--CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHH
Q 015171 102 SLAGRCLGLAIE--SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAI 178 (412)
Q Consensus 102 ~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 178 (412)
..+...+..... +++++|+++.+... .++ ..+..+++|++|++++|.+........+++|++|+++++.++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence 344444444333 37888888764322 233 3566778888888888766433336677788888887776632
Q ss_pred HHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC--CCCceEEE-ecCcccEEEeeeeeccceE-Eec-cCCCC
Q 015171 179 ASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFPIE-VNV-SSCGN 253 (412)
Q Consensus 179 ~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~-~~p~L~~L~l~~~~~~~~~-~~~-~~~~~ 253 (412)
+..++.|++|.+++|... .+....+++|+.|+++++ ..+....+ .+++|++|+++++...... ..+ ..+++
T Consensus 95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 223477777777776432 223333566777777666 12111111 3456666666665522111 112 34566
Q ss_pred CcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecC
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECC 308 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c 308 (412)
|++|+++++.+... .. ...+++|+.|+++++. ++.++ ...++|+.|+++++
T Consensus 171 L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 171 LEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred CCEEECCCCcCccc--cc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC
Confidence 66666666665442 11 1235666666666542 22221 13455666666655
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=121.19 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec--CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
.+.++.|+++.+......+|..+.++++|++|+++++.+. .+.....+++|++|+++++.+... +...+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 3589999999523333467888899999999999999775 335578899999999999887422 2223567899999
Q ss_pred EEeeccCCccee--eccCCC-CccEEEEeeCCCCc-eEE--EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~-~L~~L~i~~c~~l~-~~~--~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|.....+ .+..++ +|+.|+++++. +. .++ +...+|+.|+++++. .......+..+++|+.|+++++.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 999998754332 344555 89999998871 11 111 111239999999887 22234456789999999999988
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeec--cCCCeeeEEEec
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHG 328 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~~~L~~l~~~~ 328 (412)
+... +.. +..+++|+.|+++++.....++. ..++|+.|+++++.....++. ..++|+.+.+.+
T Consensus 233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 8653 222 56789999999998754434443 567899999999865433332 344555555544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-13 Score=129.05 Aligned_cols=96 Identities=24% Similarity=0.157 Sum_probs=46.9
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+++.|+++.+.... ..|..+..+++|++|+|++|.+........+++|+.|+|+++.++. +...|+|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECc
Confidence 56666666533221 1223455566666666666654332225556666666666655421 1123556666665
Q ss_pred ccCCcceeeccCCCCccEEEEeeC
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
+|.... +....+++|+.|++++|
T Consensus 108 ~N~l~~-~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 108 NNNISR-VSCSRGQGKKNIYLANN 130 (487)
T ss_dssp SSCCCC-EEECCCSSCEEEECCSS
T ss_pred CCcCCC-CCccccCCCCEEECCCC
Confidence 553322 11223455555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=124.38 Aligned_cols=192 Identities=15% Similarity=0.046 Sum_probs=112.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++++.|+++.+... ...|..+.++++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence 46777777664322 12234456677777887777755322 34566777777777777663111 1224567777777
Q ss_pred EeeccCCccee--eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccc
Q 015171 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 192 ~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
++++|...... .+..+++|+.|++.+|..+..+.. .+++|++|+++++....+ ..+..+++|+.|+++++.+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc
Confidence 77777533111 234467777777777655555542 356777777777662222 23566677777777777665
Q ss_pred hHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCc
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCD 309 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~ 309 (412)
.. ....+..+++|+.|+++++......+ ...++|+.|+++++.
T Consensus 232 ~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 232 EI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 52 23345567777777777653221111 234667777777663
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=124.17 Aligned_cols=230 Identities=18% Similarity=0.133 Sum_probs=160.6
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. +++++|+|+++.+... ..+..+++|+.|+|+++.+..... ..+.++++|++|++++|......
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChh
Confidence 3445665443 6899999999876433 567889999999999987743221 23567999999999998643211
Q ss_pred eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeecc-ceE-EeccCCCCCcEEEeeccccchHHHHHhhcCC
Q 015171 203 DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF-PIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKL 276 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (412)
.+..+++|+.|+++++ .+..+.. .+++|++|+++++... .+. ..+..+++|+.|+++++.+.. ++ .+..+
T Consensus 142 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l 217 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPL 217 (452)
T ss_dssp TSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTC
T ss_pred hhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-ccccc
Confidence 2445789999999987 3444432 4689999999885521 111 136789999999999998876 23 25678
Q ss_pred CCccEEeccccccccccc---ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----eecccccccceEEE
Q 015171 277 PLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSL 345 (412)
Q Consensus 277 ~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i 345 (412)
++|+.|+++++......+ ...++|+.|+++++..... ....+++|+.|.+.++.. ..+..+++|+.|.+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 999999999864322222 2567899999999865422 223568899999988765 45677899999999
Q ss_pred EEeccchh-hHHHHHHHHH
Q 015171 346 CFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 346 ~~~~~~~~-~~~~~~~~~~ 363 (412)
..+...|. ...|+...++
T Consensus 298 ~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 298 HHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp CSSCEECSTTTHHHHHHHH
T ss_pred cCCCcCCCCCchHHHHHHH
Confidence 87743332 3345544443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=117.22 Aligned_cols=187 Identities=19% Similarity=0.162 Sum_probs=129.3
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++++|++..+... .+| .+..+++|++|++++|.+...+....+++|+.|+++++.+.+- . -+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence 348888888765432 344 4677899999999998876655578899999999999888332 1 267789999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
+++|.......+..+++|+.|++++| ..+.. ...+++|+.|+++++...... .+..+++|+.|+++++.+... .
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~ 189 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI--S 189 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcC--h
Confidence 99886543334666788999999887 22222 125678888888887622222 267788888888888877652 2
Q ss_pred HhhcCCCCccEEeccccccccccc-ccccccceEEEecCcc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSVR-ISSPCLKTLILECCDK 310 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~L~~L~l~~c~~ 310 (412)
. +..+++|+.|+++++......+ ..+++|+.|++++++.
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2 5677888888888863221111 2457788888877654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=125.92 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=142.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEEeCHHHHH-HHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~Le~ 190 (412)
++++.|+++.+.....--+..+..+++|++|+++++.+.. +..+..+++|++|+++++.++..... ..+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 4788888877543222224456778889999998886542 24567788999999988877543332 23567889999
Q ss_pred EEeeccCCccee--e-ccCCCCccEEEEeeCCCCceEE---E-----------------------------------ecC
Q 015171 191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVE---I-----------------------------------KTS 229 (412)
Q Consensus 191 L~l~~c~~~~~~--~-i~~l~~L~~L~i~~c~~l~~~~---~-----------------------------------~~p 229 (412)
|++++|...... . +..+++|+.|+++++. +..+. + ..+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999888654321 1 4557889999988771 11100 0 114
Q ss_pred cccEEEeeeeeccc-e--------------EEecc-------------------------CCCCCcEEEeeccccchHHH
Q 015171 230 NVNALAIHQTYLFP-I--------------EVNVS-------------------------SCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 230 ~L~~L~l~~~~~~~-~--------------~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~ 269 (412)
+|++|+++++.... . ...+. ..++|+.|+++++.+... .
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~ 291 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L 291 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence 56666665553100 0 00000 124566666666655542 2
Q ss_pred HHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----eeccccc
Q 015171 270 CNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNAL 338 (412)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~ 338 (412)
...+..+++|+.|+++++......+ ...++|+.|++++|..-.. ....+++|+.|.+.++.. ..+.+++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 3335667788888887754322222 2457888888888754321 123467888888877655 3566788
Q ss_pred ccceEEEEEe
Q 015171 339 SLSETSLCFS 348 (412)
Q Consensus 339 ~L~~l~i~~~ 348 (412)
+|++|.+..+
T Consensus 372 ~L~~L~L~~N 381 (455)
T 3v47_A 372 NLKELALDTN 381 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEECCCC
Confidence 8999988665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=130.67 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=103.4
Q ss_pred CCceEEEEEeCCCccc----------------cCCcccc--CCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEE-
Q 015171 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC- 172 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~- 172 (412)
+++++|+++.+..... .+|..+. ++++|++|++++|.+.. +.....+++|++|+++++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999998543220 1899988 99999999999997643 3567889999999999998
Q ss_pred eCHHHHHHHH------cCCCCccEEEeeccCCccee---eccCCCCccEEEEeeCCCCc-eEE--EecCcccEEEeeeee
Q 015171 173 ADDQAIASLI------SGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY 240 (412)
Q Consensus 173 ~~~~~l~~l~------~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~-~~~--~~~p~L~~L~l~~~~ 240 (412)
++...+..-+ ..+++|++|++++|....-. .+..+++|+.|+++++. +. .++ ...++|+.|+++++.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCc
Confidence 6652232222 24589999999988654211 35567889999998872 22 221 245677777777766
Q ss_pred ccceEEeccCCCC-CcEEEeeccccc
Q 015171 241 LFPIEVNVSSCGN-LKCLKFDFLPIE 265 (412)
Q Consensus 241 ~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (412)
...++..+..+++ |++|+++++.+.
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc
Confidence 3333334555666 777777666655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.4e-12 Score=125.95 Aligned_cols=209 Identities=17% Similarity=0.132 Sum_probs=112.0
Q ss_pred cCCCCeeEEEEeceeecCCC--CCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L 213 (412)
..+++|++|+|++|.+...+ .+..+++|++|+|+++.+.... ...+..+++|+.|++++|.. ..+.+..+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhh
Confidence 44555555555555443321 1345555555555555442111 11134455555555555432 11222233444444
Q ss_pred EEeeCC------------------CCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhc
Q 015171 214 ILVNTS------------------DIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS 274 (412)
Q Consensus 214 ~i~~c~------------------~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (412)
+++++. .+..+.. ..++|+.|+++++.... ...+..+++|+.|+++++.+... .+..+.
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~ 275 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKI-MYHPFV 275 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEE-ESGGGT
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCC-CHHHhc
Confidence 443330 1111111 12345555555554211 13456677888888887776653 233456
Q ss_pred CCCCccEEecccccccccccc---cccccceEEEecCcccc--eeeccCCCeeeEEEeccee--eecccccccceEEEEE
Q 015171 275 KLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCF 347 (412)
Q Consensus 275 ~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~--~~l~~~~~L~~l~i~~ 347 (412)
.+++|+.|+++++. +..++. .+++|+.|++++|.... .....+++|+.|.+.++.. ..+..+++|+.|.++.
T Consensus 276 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 276 KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp TCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred CccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeC
Confidence 67888888888753 233332 46788888888875531 1113467888888877665 4466778899999876
Q ss_pred ec
Q 015171 348 SS 349 (412)
Q Consensus 348 ~~ 349 (412)
+.
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=124.29 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=73.5
Q ss_pred ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccch-HHHHHhhcCCCCccEEecccccccccccc----ccccc
Q 015171 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
.+++|++|+++++. ....+..+..+++|+.|+++++.+.. ..++..+..+++|+.|+++++.....++. ..++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 45778888887776 22223456778888899998888775 22445567788888888888644332332 34667
Q ss_pred ceEEEecCcccceeeccC-CCeeeEEEeccee----eecccccccceEEEEEe
Q 015171 301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 301 ~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~ 348 (412)
+.|++++|......+... ++|+.|.+.++.. ..+..+++|++|.+..+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 777777765433222222 4566666655443 22235555666655443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=116.86 Aligned_cols=185 Identities=19% Similarity=0.169 Sum_probs=135.6
Q ss_pred CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEe
Q 015171 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~ 216 (412)
.+++|++|+++++.+...+....+++|+.|+++++.+.+-. . +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 46789999999998876667788999999999999884322 1 68899999999999864333345668999999999
Q ss_pred eC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc
Q 015171 217 NT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (412)
Q Consensus 217 ~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 294 (412)
+| ..+.. ...+++|++|+++++...... .+..+++|+.|+++++.+.+ +.. +..+++|+.|+++++. ++.++
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDIS 189 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcCh
Confidence 88 22222 125689999999988732221 27788999999999998876 233 6788999999999863 23332
Q ss_pred --ccccccceEEEecCcccce-eeccCCCeeeEEEecce
Q 015171 295 --ISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDL 330 (412)
Q Consensus 295 --~~~~~L~~L~l~~c~~l~~-~~~~~~~L~~l~~~~~~ 330 (412)
..+++|+.|++++|..-.. -...+++|+.+.+.+..
T Consensus 190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 3567899999998865321 12355677777776653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-13 Score=132.47 Aligned_cols=257 Identities=14% Similarity=0.072 Sum_probs=138.3
Q ss_pred CceEEEEEeCCCcc---ccCCccccCCCCeeEEEEeceeecCC-------CCCccCcccceeEeeeEEeCHHH---HHHH
Q 015171 115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-------SENVKLFSLRKLALREVCADDQA---IASL 181 (412)
Q Consensus 115 ~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-------~~~~~l~~L~~L~L~~~~~~~~~---l~~l 181 (412)
++++|+++.+.... ..+|..+..+++|++|+++++.+... ......++|++|+++++.+++.. +...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666543221 23445555666777777766654321 00122445777777766664332 3344
Q ss_pred HcCCCCccEEEeeccCCcce-e-ecc-----CCCCccEEEEeeCCCCce-----EE---EecCcccEEEeeeeeccce--
Q 015171 182 ISGCPLIEYLEIRSCEGLES-L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI-- 244 (412)
Q Consensus 182 ~~~~p~Le~L~l~~c~~~~~-~-~i~-----~l~~L~~L~i~~c~~l~~-----~~---~~~p~L~~L~l~~~~~~~~-- 244 (412)
+..+++|++|++++|..... . .+. ..++|+.|++++| .+.. +. ..+++|++|+++++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 55567777777776653210 0 010 1357777777776 1111 11 1357788888877651110
Q ss_pred ----EEeccCCCCCcEEEeeccccchHH---HHHhhcCCCCccEEecccccccc----ccc----ccccccceEEEecCc
Q 015171 245 ----EVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVR----ISSPCLKTLILECCD 309 (412)
Q Consensus 245 ----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~----~l~----~~~~~L~~L~l~~c~ 309 (412)
......+++|++|+++++.+.... +...+..+++|++|+++++.... .+. ...++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 011224678888888877777644 34445567888888888753211 111 123578888888876
Q ss_pred ccce----e---eccCCCeeeEEEeccee-----e----ecc-cccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 310 KLIQ----V---EIETPNLSIFKYHGDLI-----S----FSS-NALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 310 ~l~~----~---~~~~~~L~~l~~~~~~~-----~----~l~-~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
.-.. + ....++|+.+.+.++.. . .+. ..++|++|.+..+.-...+...+.+.+.....++.+.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 4321 1 12347788888877644 1 111 1568888888655322223334555555555555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-12 Score=123.33 Aligned_cols=228 Identities=18% Similarity=0.205 Sum_probs=126.9
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
...+|..+. ++++.|+|+++.+... ..+..+++|++|+|+++.+..... ..+.++++|++|++++|...... .
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhH
Confidence 345555443 5677777777655322 445667777777777766632111 22456777777777776432111 2
Q ss_pred ccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccc-e-EEeccCCCCCcEEEeeccccchHHHHHhhcCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFP-I-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
+..+++|+.|+++++ .+..+.. .+++|++|+++++.... + ...+..+++|++|+++++.+.. ++. +..++
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~ 207 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLI 207 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCS
T ss_pred hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCc
Confidence 344577777777766 2333321 35677777777643111 1 1135567777777777776654 222 45567
Q ss_pred CccEEecccccccccc-c---ccccccceEEEecCcccc---eeeccCCCeeeEEEeccee-----eecccccccceEEE
Q 015171 278 LLEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSL 345 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l-~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i 345 (412)
+|+.|+++++. ++.+ + ...++|+.|+++++..-. .....+++|+.|.+.++.. ..+.++++|+.|.+
T Consensus 208 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred ccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 77777777752 2222 1 244667777777764422 1123456677777766544 34556677777777
Q ss_pred EEeccchh-hHHHHHHHHH
Q 015171 346 CFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 346 ~~~~~~~~-~~~~~~~~~~ 363 (412)
..+...|. ...|+...++
T Consensus 287 ~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 287 HHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CSSCEECSSTTHHHHHHHH
T ss_pred CCCCccCCCCchHHHHHHH
Confidence 66533232 3344444433
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-13 Score=129.52 Aligned_cols=207 Identities=19% Similarity=0.145 Sum_probs=113.5
Q ss_pred CeeEEEEeceeecC------CCCCccCcccceeEeeeEEeCHHHHHHHHc----CCCCccEEEeeccCCcce----e--e
Q 015171 140 SLHVLELSYCKLQQ------PSENVKLFSLRKLALREVCADDQAIASLIS----GCPLIEYLEIRSCEGLES----L--D 203 (412)
Q Consensus 140 ~L~~L~L~~~~~~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~----~~p~Le~L~l~~c~~~~~----~--~ 203 (412)
+|++|++++|.+.. +.....+++|++|+++++.+++.....+.. ..++|++|++++|..... + .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56666666665542 133445666677777666664444333222 245567777666643211 0 1
Q ss_pred ccCCCCccEEEEeeCCCCce-----EEE----ecCcccEEEeeeeeccc-----eEEeccCCCCCcEEEeeccccchHHH
Q 015171 204 LVNLSNLKEIILVNTSDIKR-----VEI----KTSNVNALAIHQTYLFP-----IEVNVSSCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~-----~~~----~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (412)
+..+++|+.|++++|. +.. +.. ..++|++|+++++.... +...+..+++|++|+++++.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 2224677777776662 111 100 13477777777665211 12234556778888887777766443
Q ss_pred HH----hhcCCCCccEEeccccccccc-----ccc---cccccceEEEecCcccc----ee----eccCCCeeeEEEecc
Q 015171 270 CN----GISKLPLLEYLSMTKCHKLTS-----VRI---SSPCLKTLILECCDKLI----QV----EIETPNLSIFKYHGD 329 (412)
Q Consensus 270 ~~----~~~~~~~L~~L~l~~c~~l~~-----l~~---~~~~L~~L~l~~c~~l~----~~----~~~~~~L~~l~~~~~ 329 (412)
.. +...+++|++|++++|. ++. ++. ..++|++|+++++..-. .+ ....++|+.|.+.++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 32 22346778888887762 222 222 35678888887775421 11 112357788777765
Q ss_pred ee---------eecccccccceEEEEEe
Q 015171 330 LI---------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 330 ~~---------~~l~~~~~L~~l~i~~~ 348 (412)
.. ..+.+.++|++|.++.+
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 43 23445578888888655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=124.47 Aligned_cols=208 Identities=15% Similarity=0.042 Sum_probs=146.9
Q ss_pred CCceEEEEEeCCCccccCCccc-cCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.+.. ..+|..+ ..+++|++|++++|.+... ..+..+++|+.|+++++.++... +..+|.|+.
T Consensus 123 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 4788888887543 3667664 6789999999999877543 35678999999999998774322 345667777
Q ss_pred EEeeccCCc------------------ceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeecc-ceEEecc
Q 015171 191 LEIRSCEGL------------------ESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLF-PIEVNVS 249 (412)
Q Consensus 191 L~l~~c~~~------------------~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~-~~~~~~~ 249 (412)
|+++++... ..+.....++|+.|++++|. +.... ..+++|+.|+++++... ..+..+.
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 666655321 11111123689999999882 22211 25789999999998732 2234678
Q ss_pred CCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeeccCCCeeeEEE
Q 015171 250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKY 326 (412)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~ 326 (412)
.+++|+.|+++++.+.. ++.....+++|+.|+++++.. ..++. .+++|+.|++++|.....-...+++|+.+.+
T Consensus 276 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEe
Confidence 89999999999998876 344456689999999999743 34433 5689999999998764333456788999999
Q ss_pred eccee
Q 015171 327 HGDLI 331 (412)
Q Consensus 327 ~~~~~ 331 (412)
.++..
T Consensus 353 ~~N~~ 357 (597)
T 3oja_B 353 SHNDW 357 (597)
T ss_dssp CSSCE
T ss_pred eCCCC
Confidence 88765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-12 Score=130.45 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCccc----------------cCCcccc--CCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEE-
Q 015171 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC- 172 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~- 172 (412)
++++.|+++.+..... .+|..+. ++++|++|+|++|.+... .....+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 5899999998553321 2888887 899999999999875433 557789999999999997
Q ss_pred eCH-H---HHHHH---HcCCCCccEEEeeccCCccee---eccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeee
Q 015171 173 ADD-Q---AIASL---ISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY 240 (412)
Q Consensus 173 ~~~-~---~l~~l---~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~ 240 (412)
++. . .+..+ +..+|+|+.|++++|....-. .+..+++|+.|+++++. +..++ ..+++|+.|+++++.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc
Confidence 654 2 22222 246679999999988654211 25567888888888772 22222 145678888887776
Q ss_pred ccceEEeccCCCC-CcEEEeeccccc
Q 015171 241 LFPIEVNVSSCGN-LKCLKFDFLPIE 265 (412)
Q Consensus 241 ~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (412)
...++..+..+++ |+.|+++++.+.
T Consensus 607 l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 607 IEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred cccchHHHhhccccCCEEECcCCCCC
Confidence 3344444566676 777777777655
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-12 Score=119.71 Aligned_cols=210 Identities=17% Similarity=0.097 Sum_probs=143.8
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 188 (412)
+++++|+++.+... .+|.. +..+++|++|+++++.+... .....+++|++|+++++.+.. +..-+..+++|
T Consensus 28 ~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 47888888875433 66665 46789999999998866422 334468899999999887631 11225678999
Q ss_pred cEEEeeccCCcce---eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeecc--ceEEeccCCCCCcEEEe
Q 015171 189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF 259 (412)
Q Consensus 189 e~L~l~~c~~~~~---~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l 259 (412)
++|+++++..... -.+..+++|+.|+++++. +..+. ..+++|++|+++++... ..+..+..+++|++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 9999988754321 134457899999998872 22111 14688999999888732 24456788999999999
Q ss_pred eccccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCccccee---eccC-CCeeeEEEecce
Q 015171 260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQV---EIET-PNLSIFKYHGDL 330 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~---~~~~-~~L~~l~~~~~~ 330 (412)
+++.+... ....+..+++|+.|+++++.. ..++ ...++|+.|+++++...... .... ++|+.+.+.+..
T Consensus 183 s~n~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQL-SPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEE-CTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCc-CHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99887763 234466789999999998642 2222 24678999999998654322 1234 478899887754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.2e-12 Score=113.50 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=97.4
Q ss_pred CCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee---eccCCCCccE
Q 015171 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE 212 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~ 212 (412)
.++|++|+++++.+... ..+..+++|++|+++++.++... ...+..+++|++|++++|..+..+ .+..+++|+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35778888877765432 34567778888888777653221 122456778888888877644333 2344677777
Q ss_pred EEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 213 L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
|+++++. +..+. ..+++|++|+++++...... ..+..+++|++|+++++.+... ....+..+++|+.|+++++
T Consensus 110 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCC
Confidence 7777661 11111 13566777777766522211 1255677777777777766541 1223455677777777775
Q ss_pred cccccccc---cccccceEEEecCc
Q 015171 288 HKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 288 ~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
......+. ..++|+.|+++++.
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccCHhHccCcccccEeeCCCCc
Confidence 32222121 34567777776653
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=113.77 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=133.4
Q ss_pred ccCcccceeEeeeEEe--CHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCC--C-CceEEEecCccc
Q 015171 158 VKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS--D-IKRVEIKTSNVN 232 (412)
Q Consensus 158 ~~l~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~--~-l~~~~~~~p~L~ 232 (412)
..+++|+.++++++.+ ....+..++. .++|+.|++++|..........+++|+.|++++|. . .......+++|+
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 4556666666655544 2123333222 35688888888764332222457899999999882 1 111123678999
Q ss_pred EEEeeeeecc---ceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccc-cccceEEEecC
Q 015171 233 ALAIHQTYLF---PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLILECC 308 (412)
Q Consensus 233 ~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~L~~L~l~~c 308 (412)
+|+++++... ..+..+..+++|+.|+++++.+........+..+++|+.|+++++.....++... ++|+.|++++|
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC
Confidence 9999988732 2234478899999999999998764333446678999999999986545554444 69999999998
Q ss_pred cccceee---ccCCCeeeEEEeccee-----eecccccccceEEEEEeccchh-hHHHH
Q 015171 309 DKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMV-NIEWV 358 (412)
Q Consensus 309 ~~l~~~~---~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~~~~~~-~~~~~ 358 (412)
..- .++ ..+++|+.+.+.++.. ..+.++++|+++.+..+.-.|. ...|+
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 643 222 2678899999988765 2367789999999987743332 33444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=127.29 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=60.7
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc---eeeccCCCeeeEE
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFK 325 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~ 325 (412)
++|+.|+++++.+... ....+..+++|+.|+++++......+ ...++|++|+++++.... .....+++|+.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5677777766665442 22335567778888887753222111 245678888888875422 2224567788888
Q ss_pred Eeccee-----eecccccccceEEEEEe
Q 015171 326 YHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 326 ~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
+.++.. ..+.++++|+.|.+..+
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 876654 35677889999999765
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=120.09 Aligned_cols=83 Identities=20% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecC---CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++.+.. ..+|+. +..+++|++|+++++.+.. +.....+++|++|+++++..........+..+++|+
T Consensus 74 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 74 GSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 3677777765432 234443 5667777777777776642 244567777777777776531111111245677777
Q ss_pred EEEeeccCC
Q 015171 190 YLEIRSCEG 198 (412)
Q Consensus 190 ~L~l~~c~~ 198 (412)
+|++++|..
T Consensus 152 ~L~L~~n~l 160 (549)
T 2z81_A 152 ELEIKALSL 160 (549)
T ss_dssp EEEEEETTC
T ss_pred eeeccCCcc
Confidence 777776643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=121.34 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=141.1
Q ss_pred CCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
+++|++|+|+++.+... ..+..+++|++|+|+++.++... . +..+++|++|++++|.. ..+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l-~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEE-EEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcC-CCCC--CCCCcCEEEC
Confidence 45899999999877654 35678899999999888773211 1 67789999999988843 2222 2378999999
Q ss_pred eeCCCCceEE-EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 216 VNTSDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 216 ~~c~~l~~~~-~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++| .+..+. ..+++|+.|+++++. ....+..++.+++|+.|+++++.+.......+...+++|+.|+++++. ++.+
T Consensus 107 ~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 184 (487)
T 3oja_A 107 ANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (487)
T ss_dssp CSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred cCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence 887 333333 356889999998887 222244567788999999998888764444444568899999998864 2232
Q ss_pred cc--cccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccceEEEEEec
Q 015171 294 RI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS 349 (412)
Q Consensus 294 ~~--~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~~ 349 (412)
+. .+++|+.|+++++..-. .....+++|+.|.+.++.. ..+..+++|+.+.+..+.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 22 46789999998876432 1123557788888877654 345567788888886653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=123.70 Aligned_cols=233 Identities=14% Similarity=0.072 Sum_probs=130.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecC--CC--CCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
++++.|+++.+... ...|..+.++++|++|+|++|.+.. +. ....+++|++|+|+++.+........+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 36777777653322 2235556667777777777776643 11 2566777777777777663322223356677777
Q ss_pred EEEeeccCCcc---------------eee-------------ccCCC------CccEEEEeeCC----------------
Q 015171 190 YLEIRSCEGLE---------------SLD-------------LVNLS------NLKEIILVNTS---------------- 219 (412)
Q Consensus 190 ~L~l~~c~~~~---------------~~~-------------i~~l~------~L~~L~i~~c~---------------- 219 (412)
+|++++|.... .+. +..++ +|+.|+++++.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 77777663211 000 01111 26666666551
Q ss_pred CCceEEEe-------------------------cCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhh
Q 015171 220 DIKRVEIK-------------------------TSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (412)
Q Consensus 220 ~l~~~~~~-------------------------~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (412)
.+..+... .++|+.|+++++.... ....+..+++|+.|+++++.+... ....+
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~ 310 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAF 310 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHh
Confidence 01111111 2567777777665211 123467788888899888877653 22345
Q ss_pred cCCCCccEEeccccccccccc---ccccccceEEEecCcccc---eeeccCCCeeeEEEecceeeecccccccceEEEEE
Q 015171 274 SKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLISFSSNALSLSETSLCF 347 (412)
Q Consensus 274 ~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~~~l~~~~~L~~l~i~~ 347 (412)
..+++|+.|+++++......+ ...++|+.|+++++..-. .....+++|+.|.+.++....+...++|+++.+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEES
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCC
Confidence 677888888888763222111 255778888888774321 11234677888877776543333355666666654
Q ss_pred e
Q 015171 348 S 348 (412)
Q Consensus 348 ~ 348 (412)
+
T Consensus 391 N 391 (844)
T 3j0a_A 391 N 391 (844)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-12 Score=123.37 Aligned_cols=216 Identities=19% Similarity=0.198 Sum_probs=136.7
Q ss_pred CCceEEEEEeCCCcc---ccCCccccCCCCeeEEEEeceeecCC-----CC-------CccCcccceeEeeeEEeCHH--
Q 015171 114 SEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ-- 176 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-----~~-------~~~l~~L~~L~L~~~~~~~~-- 176 (412)
++++.|+++.+.... ..++..+..+++|++|+|++|..... .. ...+++|++|+|+++.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 579999888753221 12334466788999999988744321 11 25678999999999888543
Q ss_pred -HHHHHHcCCCCccEEEeeccCCcce----e--eccCC---------CCccEEEEeeCCCC-ceEE------EecCcccE
Q 015171 177 -AIASLISGCPLIEYLEIRSCEGLES----L--DLVNL---------SNLKEIILVNTSDI-KRVE------IKTSNVNA 233 (412)
Q Consensus 177 -~l~~l~~~~p~Le~L~l~~c~~~~~----~--~i~~l---------~~L~~L~i~~c~~l-~~~~------~~~p~L~~ 233 (412)
.+...+..+++|+.|++++|..... + .+..+ ++|+.|++++|.-- ..+. ..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3445567889999999998864211 1 01122 78999998887211 1111 14678888
Q ss_pred EEeeeeeccc------eEEeccCCCCCcEEEeeccccch---HHHHHhhcCCCCccEEeccccccccc----ccc-----
Q 015171 234 LAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIED---EWLCNGISKLPLLEYLSMTKCHKLTS----VRI----- 295 (412)
Q Consensus 234 L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~----- 295 (412)
|+++++.... ....+..+++|+.|+++++.+.+ ..+...+..+++|+.|++++|..... ++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 8888876221 11145678888888888888764 23445567788888888888643221 122
Q ss_pred cccccceEEEecCcccc----eee----ccCCCeeeEEEecc
Q 015171 296 SSPCLKTLILECCDKLI----QVE----IETPNLSIFKYHGD 329 (412)
Q Consensus 296 ~~~~L~~L~l~~c~~l~----~~~----~~~~~L~~l~~~~~ 329 (412)
..++|+.|++++|..-. .++ ..+|+|+.+.+.++
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 26778888888876532 122 22466676666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=113.86 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=150.6
Q ss_pred CCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.+++|++|+++++.+... ..+..+++|++|+++++.+.... . +..+++|++|++++|.. ..+. ..++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-EEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-cccc--CCCCcCEEE
Confidence 467899999999987654 24678999999999998773211 1 67899999999998853 3222 348999999
Q ss_pred EeeCCCCceEEE-ecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccc
Q 015171 215 LVNTSDIKRVEI-KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS 292 (412)
Q Consensus 215 i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 292 (412)
++++ .+..+.. .+++|++|+++++.... ....+..+++|++|+++++.+.......+...+++|+.|+++++. ++.
T Consensus 106 l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 106 AANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 9987 4444433 57899999999887222 234567789999999999988764444445578999999999864 333
Q ss_pred ccc--cccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccceEEEEEecc
Q 015171 293 VRI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH 350 (412)
Q Consensus 293 l~~--~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~~~ 350 (412)
++. ..++|+.|++++|..-. ......++|+.+.+.++.. ..+..+++|+.+.+..+..
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 322 47899999999986532 1123567899999888765 3456778999999976643
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=115.80 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=131.7
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
+.++.|+++.+... ...|..+..+++|++|+++++.+... ..+..+++|++|+++++.+..... ..+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEE
Confidence 47899998875432 22345677899999999999876433 457789999999999988743222 235789999999
Q ss_pred EeeccCCcc-e--eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 192 ~l~~c~~~~-~--~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
++++|.... . -.+..+++|+.|++++|..+..+.. .+++|+.|+++++. ....+..+..+++|++|+++.+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999886432 1 2355678999999998854555431 46789999998876 22223456778889999998877
Q ss_pred cchHHHHHhhcCCCCccEEecccccccc------cccccccccceEEEecCc
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCD 309 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~------~l~~~~~~L~~L~l~~c~ 309 (412)
.... .......+++|+.|+++++...+ .+....++|+.|++.++.
T Consensus 184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 6542 22334568889999998753222 111234566666666553
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=112.71 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
++|++|++++|.+...+....+++|++|+++++.+.. + -...++|++|++++|....--.+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l---p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--L---PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--c---CCCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4566666666555433445556666666666655421 1 1122456666666554322113344566666666655
Q ss_pred CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccc
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
.+..++...++|++|+++++....++ .+..+++|++|+++++.+.
T Consensus 206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 12222222346666666665522222 2555666666666655544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-12 Score=129.96 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=127.5
Q ss_pred CCccccCCCCeeEEEEeceeecC-------------------CCCCc--cCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 131 LPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 131 lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+|..+.++++|++|+|+++.+.. |.... .+++|+.|+|++|.+... +...+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCC
Confidence 88889999999999999998764 34444 899999999999876322 224467899999
Q ss_pred EEEeeccCCcce--e---------eccCCCCccEEEEeeCCCCceEEE-----ecCcccEEEeeeeeccceEEeccCCCC
Q 015171 190 YLEIRSCEGLES--L---------DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLFPIEVNVSSCGN 253 (412)
Q Consensus 190 ~L~l~~c~~~~~--~---------~i~~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~ 253 (412)
.|++++|..+.. + ....+++|+.|++++| .+..++. .+++|+.|+++++....++ .++.+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 999999973221 1 2234579999999998 2334432 5689999999998844545 7889999
Q ss_pred CcEEEeeccccchHHHHHhhcCCCC-ccEEeccccccccccccc-----ccccceEEEecCcc
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRIS-----SPCLKTLILECCDK 310 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~-----~~~L~~L~l~~c~~ 310 (412)
|+.|+++++.+.. ++..+..+++ |+.|+++++. +..++.. .++|+.|++++|..
T Consensus 597 L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 597 LTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ceEEECcCCcccc--chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcC
Confidence 9999999998873 4555677888 9999999864 3344431 12367777766643
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=111.79 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|++..+... .++ .+..+++|++|++++|.+...+....+++|+.|+++++.+++ +.. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence 46778877764332 333 356678888888888877655446778888888888877733 122 567788888888
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHH
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (412)
++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++...... .+..+++|+.|+++++.+.+ +..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~--l~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LRA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--CGG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--Chh
Confidence 7775433223444567777777666 111111 13455666666555421111 14555566666666555544 222
Q ss_pred hhcCCCCccEEecccc
Q 015171 272 GISKLPLLEYLSMTKC 287 (412)
Q Consensus 272 ~~~~~~~L~~L~l~~c 287 (412)
+..+++|+.|+++++
T Consensus 196 -l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCSEEEEEEE
T ss_pred -hccCCCCCEEECcCC
Confidence 344555666665553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.8e-12 Score=113.29 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=131.4
Q ss_pred CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEE-eCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++..... .++ ..+..+++|++|+++++.+... ..+..+++|++|+++++. +.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 47888888764332 344 3467789999999999866432 456788999999999886 42211 22356789999
Q ss_pred EEEeeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeecc
Q 015171 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (412)
Q Consensus 190 ~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (412)
+|++++|...... .+..+++|+.|+++++ .+..+. ..+++|++|+++++....... .+..+++|++|+++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 9999988643321 2445789999999887 222222 146889999999886333222 3677899999999998
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcc
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDK 310 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~ 310 (412)
.+.... ...+..+++|+.|+++++. ++.++ ...++|+.|++++++.
T Consensus 188 ~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 188 RVAHVH-PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccC-HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 877632 3446678999999999863 33332 2457788888877654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-12 Score=130.69 Aligned_cols=175 Identities=11% Similarity=0.172 Sum_probs=127.6
Q ss_pred cCCccccCCCCeeEEEEeceeecC-------------------CCCCc--cCcccceeEeeeEEeCHHHHHHHHcCCCCc
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLI 188 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 188 (412)
.+|..+.++++|++|+|+++.+.. +.... .+++|++|+++++.+... +...+.++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence 388889999999999999998754 35555 899999999999876322 22346789999
Q ss_pred cEEEeeccCCcce--e--ecc------CCCCccEEEEeeCCCCceEEE-----ecCcccEEEeeeeecc-ceEEeccCCC
Q 015171 189 EYLEIRSCEGLES--L--DLV------NLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLF-PIEVNVSSCG 252 (412)
Q Consensus 189 e~L~l~~c~~~~~--~--~i~------~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~l~~~~~~-~~~~~~~~~~ 252 (412)
++|++++|..+.. + .+. .+++|+.|++++| .+..++. .+++|+.|+++++... .++ .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 9999999973321 2 122 2489999999998 2223332 5689999999988733 445 778889
Q ss_pred CCcEEEeeccccchHHHHHhhcCCCC-ccEEeccccccccccccc-----ccccceEEEecCcc
Q 015171 253 NLKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRIS-----SPCLKTLILECCDK 310 (412)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~-----~~~L~~L~l~~c~~ 310 (412)
+|+.|+++++.+.. ++..+..+++ |+.|+++++. ++.++.. .++|+.|++++|..
T Consensus 354 ~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 354 KLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC
Confidence 99999999998873 4445677888 9999998864 2244431 23677777777654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=111.45 Aligned_cols=208 Identities=15% Similarity=0.088 Sum_probs=124.4
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+.++.|+++.+.. ..++. .+..+++|++|+++++.+... ..+..+++|++|+++++.++. +. ....++|++
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCE
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccccE
Confidence 4677777766432 23443 456678888888888766433 446677888888887776631 11 012367888
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCCC--ceE---EEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDI--KRV---EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l--~~~---~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|...... .+..+++|+.|+++++.-- ... ...+++|++|+++++....++.. ..++|++|+++++.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc--ccccCCEEECCCCc
Confidence 888777543221 2445678888888776211 000 11457788888877763222222 23788888888877
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccc---cccccccceEEEecCcccceee---ccCCCeeeEEEeccee
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~ 331 (412)
+.... ...+..+++|+.|+++++...... ....++|+.|++++|... .++ ...++|+.+.+.+...
T Consensus 204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 66531 234567788888888875322211 124577888888887543 222 3456677777766544
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=115.00 Aligned_cols=226 Identities=14% Similarity=0.104 Sum_probs=115.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... ...|..+..+++|++|+++++.+...+... +++|++|+++++.+..- ....+..+++|++|++
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEEC
Confidence 35666666553221 112334555666666666666554322211 25666666666655211 1122455666777776
Q ss_pred eccCCcc----eeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchH
Q 015171 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 194 ~~c~~~~----~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++.... ...+..+ +|+.|+++++ .+..++. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 6664321 1112222 5666666655 1221211 125677777776652221 13456677777777777766552
Q ss_pred HHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccc----eee-----ccCCCeeeEEEeccee----
Q 015171 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI----QVE-----IETPNLSIFKYHGDLI---- 331 (412)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~----~~~-----~~~~~L~~l~~~~~~~---- 331 (412)
....+..+++|+.|+++++. ++.++. ..++|+.|+++++..-. .+. ...+.|+.+.+.+...
T Consensus 233 -~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 233 -ENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -CTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -ChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 12234567777777777752 233432 45667777777764321 010 0134466666655432
Q ss_pred ---eecccccccceEEEE
Q 015171 332 ---SFSSNALSLSETSLC 346 (412)
Q Consensus 332 ---~~l~~~~~L~~l~i~ 346 (412)
..+..+++|+.+.+.
T Consensus 311 ~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SCGGGGTTBCCSTTEEC-
T ss_pred cCcccccccchhhhhhcc
Confidence 234455566666553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=105.47 Aligned_cols=166 Identities=18% Similarity=0.134 Sum_probs=84.7
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEE-eCHHHHHHHHcCCCCccEEEeeccCCcceee---ccCCCCccEE
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEI 213 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~l~~L~~L 213 (412)
+|++|+++++.+... ..+..+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666654322 234556666666666664 32110 1123456666666666643333332 2345666666
Q ss_pred EEeeC--CCCceEEEecCccc---EEEeeee-eccceEE-eccCCCCCc-EEEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 214 ILVNT--SDIKRVEIKTSNVN---ALAIHQT-YLFPIEV-NVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 214 ~i~~c--~~l~~~~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
+++++ ..+.. ....++|+ +|+++++ ....+.. .+..+++|+ +|+++++.+..- ....+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEcC
Confidence 66665 11211 11334454 6666665 3211111 245667777 777776665531 1112222 567777777
Q ss_pred cccccccccc----cc-cccceEEEecCc
Q 015171 286 KCHKLTSVRI----SS-PCLKTLILECCD 309 (412)
Q Consensus 286 ~c~~l~~l~~----~~-~~L~~L~l~~c~ 309 (412)
++..++.++. .. ++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 6644444432 33 567777776643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=106.40 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=130.3
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEecee-ecCC--CCCccCcccceeEeee-EEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~~--~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~p~L 188 (412)
.+++.|+++.... ..+|. .+..+++|++|+++++. +... ..+..+++|++|++++ +.+..-. ...+.++++|
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 3788898887543 24554 46678999999999986 5322 3567899999999998 5553211 1235678999
Q ss_pred cEEEeeccCCcceeeccCCCCcc---EEEEeeCCCCceEEE----ecCccc-EEEeeeeeccceEEeccCCCCCcEEEee
Q 015171 189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 189 e~L~l~~c~~~~~~~i~~l~~L~---~L~i~~c~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 260 (412)
++|++++|....--.+..+++|+ .|+++++..+..+.. .+++|+ .|+++++....+.......++|++|+++
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999988643322244566777 999988756666543 467899 9999887633322222233789999999
Q ss_pred ccc-cchHHHHHhhcCC-CCccEEecccccccccccc-cccccceEEEecCcc
Q 015171 261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK 310 (412)
Q Consensus 261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~ 310 (412)
++. +..- ....+..+ ++|+.|+++++ .++.++. .+++|+.|++.++..
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 884 6541 23345677 89999999984 3444543 578899998887753
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-11 Score=113.26 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCccccCCccc--cCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEE
Q 015171 101 ASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC 172 (412)
Q Consensus 101 ~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~ 172 (412)
...+..........++++|+++.+... ...|..+ ..+++|++|+++++.+... .....+++|++|+++++.
T Consensus 78 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 78 AQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 444555555555567888888764322 2334444 5667777777777765432 111246677777777766
Q ss_pred eCHHHHHHHHcCCCCccEEEeeccCCcce------eeccCCCCccEEEEeeC
Q 015171 173 ADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 173 ~~~~~l~~l~~~~p~Le~L~l~~c~~~~~------~~i~~l~~L~~L~i~~c 218 (412)
+.... ...+..+++|++|++++|..... ..+..+++|+.|++++|
T Consensus 157 l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 157 SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 52211 12244566777777776653321 11233556666666655
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-12 Score=118.56 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=97.4
Q ss_pred CCCCeeEEEEeceeecCC--CCC--ccCcccceeEeeeEEeCHH--HHHHHHc-CCCCccEEEeeccCCccee--eccCC
Q 015171 137 YVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL 207 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~l~~c~~~~~~--~i~~l 207 (412)
.+++|++|+++++.+... ... ..+++|++|+++++.++.. .+..+.. ..++|++|++++|...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578888888888877532 222 6788888888888887332 2222211 1378888888887543211 23344
Q ss_pred CCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch--HHHHHhhcCCCCccEEecc
Q 015171 208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 208 ~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 285 (412)
++|+.|+++++.-...+. .+....+..+++|++|+++++.+.. .....+...+++|+.|+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 556666665542110000 0001112445556666665555542 1222333445566666665
Q ss_pred cccccccc----cccccccceEEEecCcccceeeccC-CCeeeEEEeccee---eecccccccceEEEEE
Q 015171 286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCF 347 (412)
Q Consensus 286 ~c~~l~~l----~~~~~~L~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~~---~~l~~~~~L~~l~i~~ 347 (412)
++...... ....++|+.|+++++..- .++... ++|+.|.+.+... ..+..+++|+++.+..
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence 54222211 112345566666555432 222211 3555555554433 1244556666666643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5e-12 Score=114.15 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++++.+..+... .+ ..+..+++|++|+++++.+...+....+++|++|+++++.++.. ....+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK--SV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCC--CC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcc--cc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 346777777653322 22 23566778888888887766555566777788888877766321 112245677778887
Q ss_pred eeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccc
Q 015171 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 193 l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 265 (412)
+++|...... .+..+++|+.|++++| .+..+. ..+++|+.|+++++...... ..+..+++|++|+++++.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 7777543211 1344567777777766 222221 13456666666665521111 12355666666666666555
Q ss_pred hHHHHHhhcCCCCccEEecccc
Q 015171 266 DEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c 287 (412)
.. ....+..+++|+.|+++++
T Consensus 195 ~~-~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 SV-PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CC-CTTTTTTCTTCCEEECCSS
T ss_pred cc-CHHHHhCCcCCCEEEccCC
Confidence 41 1223445666666666654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=113.27 Aligned_cols=151 Identities=22% Similarity=0.228 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCC--CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSE--NVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++++.|+++.+... ...|..+..+++|++|+++++.+...+. ...+++|++|+++++.+..-.....+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 46777777654322 1223345667777888877776654322 45677777777777766321110134567777777
Q ss_pred EeeccCCccee---eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccc
Q 015171 192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 192 ~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 263 (412)
++++|.....+ .+..+++|+.|+++++ .+..+. ..+++|++|+++++....... .+..+++|+.|+++++.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 77777544433 2344567777777766 222221 134566666666655211111 12335666666666655
Q ss_pred cch
Q 015171 264 IED 266 (412)
Q Consensus 264 ~~~ 266 (412)
+..
T Consensus 234 l~~ 236 (353)
T 2z80_A 234 LDT 236 (353)
T ss_dssp CTT
T ss_pred ccc
Confidence 543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-11 Score=121.53 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=121.8
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
..+++.|++..+... .+| .+..+++|+.|+|++|.+...+....+++|+.|+|+++.+.. +. -+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEE
Confidence 457888887764432 344 477899999999999988766558889999999999998843 12 367899999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
|++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++...... .+..+++|+.|+|++|.+.+ +.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~--l~ 191 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LR 191 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--CG
T ss_pred ecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCch-hhccCCCCCEEECcCCCCCC--Ch
Confidence 99886544334556789999999988 222221 25688999999888732221 27888999999999888876 23
Q ss_pred HhhcCCCCccEEeccccc
Q 015171 271 NGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~ 288 (412)
.+..+++|+.|+|++++
T Consensus 192 -~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGTTCTTCSEEECCSEE
T ss_pred -HHccCCCCCEEEccCCc
Confidence 36778999999998864
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=103.18 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|++..+... .+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence 36777777764332 444 46667777777777775555455566777777777776654322222 445667777777
Q ss_pred eccCCcc--eeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHH
Q 015171 194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 194 ~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (412)
++|.... .-.+..+++|+.|++++|..+.. +. .+..+++|+.|+++++.+.+ +.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--------------------~~-~l~~l~~L~~L~l~~n~i~~--~~- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD--------------------IM-PLKTLPELKSLNIQFDGVHD--YR- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--------------------CG-GGGGCSSCCEEECTTBCCCC--CT-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc--------------------cH-hhcCCCCCCEEECCCCCCcC--hH-
Confidence 6664432 11233445555555555421211 11 34566777777777776655 22
Q ss_pred hhcCCCCccEEeccc
Q 015171 272 GISKLPLLEYLSMTK 286 (412)
Q Consensus 272 ~~~~~~~L~~L~l~~ 286 (412)
.+..+++|+.|++++
T Consensus 176 ~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TGGGCSSCCEEEECB
T ss_pred HhccCCCCCEEEeeC
Confidence 345667777777766
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-11 Score=121.46 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=29.2
Q ss_pred ccccceEEEecCcccc---eeeccCCCeeeEEEeccee-------------eecccccccceEEEEEe
Q 015171 297 SPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 297 ~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-------------~~l~~~~~L~~l~i~~~ 348 (412)
+++|+.|+++++..-. .....+++|+.+.+.+... ..+.++++|+.|.+..+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 4566666666654321 1122456677777665543 12566677777777554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.2e-10 Score=109.85 Aligned_cols=83 Identities=13% Similarity=-0.002 Sum_probs=48.5
Q ss_pred ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccch-HHHHHhhcCCCCccEEecccccccccccc----ccccc
Q 015171 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
.+++|++|+++++. ....+..+..+++|+.|+++++.+.. ..+...+..+++|+.|+++++.....++. ..++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45677777777766 22123345677788888888777664 12334456677788887777543221221 23455
Q ss_pred ceEEEecCc
Q 015171 301 KTLILECCD 309 (412)
Q Consensus 301 ~~L~l~~c~ 309 (412)
+.|++++|.
T Consensus 431 ~~L~l~~n~ 439 (562)
T 3a79_B 431 LVLNLSSNM 439 (562)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 555555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=8e-12 Score=115.19 Aligned_cols=206 Identities=17% Similarity=0.089 Sum_probs=131.3
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHH-------HcCCCCccEEEeeccCCccee--ec--cCC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-------ISGCPLIEYLEIRSCEGLESL--DL--VNL 207 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------~~~~p~Le~L~l~~c~~~~~~--~i--~~l 207 (412)
++|++|+++++.+..+... ...|+.|+++++.+....+... ..++++|++|++++|...+.. .+ ..+
T Consensus 43 ~~L~~l~l~~n~l~~p~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTTCCCHHH--HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeecccccccHHHH--HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4566666666655221111 1237888888777622111111 226889999999998654322 22 567
Q ss_pred CCccEEEEeeC--CCCceEEEec-----CcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchH-HHHHhh--cCC
Q 015171 208 SNLKEIILVNT--SDIKRVEIKT-----SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WLCNGI--SKL 276 (412)
Q Consensus 208 ~~L~~L~i~~c--~~l~~~~~~~-----p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~--~~~ 276 (412)
++|+.|+++++ .......... ++|++|+++++...... ..+..+++|++|+++++.+... .+.... ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 89999999987 2221111122 89999999998733322 4577899999999999987653 122222 788
Q ss_pred CCccEEeccccccc--cccc----ccccccceEEEecCccccee----eccCCCeeeEEEeccee----eecccccccce
Q 015171 277 PLLEYLSMTKCHKL--TSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----SFSSNALSLSE 342 (412)
Q Consensus 277 ~~L~~L~l~~c~~l--~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~l~~~~~~~----~~l~~~~~L~~ 342 (412)
++|+.|+++++.-. ..++ ...++|+.|+++++...... ....++|+.|.+.++.. ..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 99999999996422 1222 24479999999998654322 23457899999888655 1222 68999
Q ss_pred EEEEEe
Q 015171 343 TSLCFS 348 (412)
Q Consensus 343 l~i~~~ 348 (412)
|.++.+
T Consensus 279 L~Ls~N 284 (312)
T 1wwl_A 279 LDLSYN 284 (312)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 999766
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=113.09 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccceeEeeeEEeCH---HHHHHHHcCC-CCccEEEeeccC
Q 015171 161 FSLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCE 197 (412)
Q Consensus 161 ~~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~ 197 (412)
++|++|+|+++.+++ ..+...+..+ ++|++|++++|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 555555555555422 2233333333 455555555554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-11 Score=107.96 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=109.5
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
..+++|++|.+.++.+...+....+++|+.|+++++.+.+- . -+..+++|++|++++|...... .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44688999999999887767788899999999999888432 2 3678999999999988543221 14457888888
Q ss_pred EEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 214 ~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
++++| .+..+. ..+++|++|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|+++++.
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc
Confidence 88877 222222 13567777777776522211 1245677777777777766542 22334566777777777653
Q ss_pred cccccc---ccccccceEEEecCc
Q 015171 289 KLTSVR---ISSPCLKTLILECCD 309 (412)
Q Consensus 289 ~l~~l~---~~~~~L~~L~l~~c~ 309 (412)
.....+ ..+++|+.|++++++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCC
Confidence 221111 234566666666654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.9e-11 Score=105.76 Aligned_cols=86 Identities=22% Similarity=0.135 Sum_probs=48.0
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ecc
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLV 205 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~ 205 (412)
.+|..+. ++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|+++++...... .+.
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4554332 5677788877766443 2456677777777777665311 1122456677777777766432111 122
Q ss_pred CCCCccEEEEeeC
Q 015171 206 NLSNLKEIILVNT 218 (412)
Q Consensus 206 ~l~~L~~L~i~~c 218 (412)
.+++|+.|+++++
T Consensus 107 ~l~~L~~L~l~~n 119 (270)
T 2o6q_A 107 QLVNLAELRLDRN 119 (270)
T ss_dssp TCSSCCEEECCSS
T ss_pred cccCCCEEECCCC
Confidence 3455666665554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-11 Score=116.52 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=128.1
Q ss_pred CCceEEEEEeCCCc--cccCCccc-------cCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEeCHHH-
Q 015171 114 SEVKELVLVHWRSE--RRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA- 177 (412)
Q Consensus 114 ~~l~~L~l~~~~~~--~~~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~- 177 (412)
++++.|+++.+... ...+|..+ ..+++|++|+|+++.+... .....+++|++|+|++|.+++..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 47888888764221 12334333 5678888888888877542 23466788888888888875433
Q ss_pred --HHHHHcCC---------CCccEEEeeccCCcc-ee-----eccCCCCccEEEEeeCCCCce---------EEEecCcc
Q 015171 178 --IASLISGC---------PLIEYLEIRSCEGLE-SL-----DLVNLSNLKEIILVNTSDIKR---------VEIKTSNV 231 (412)
Q Consensus 178 --l~~l~~~~---------p~Le~L~l~~c~~~~-~~-----~i~~l~~L~~L~i~~c~~l~~---------~~~~~p~L 231 (412)
+...+..+ ++|++|++++|.... .+ .+..+++|+.|++++| .+.. ....+++|
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCc
Confidence 33333344 888888888886431 11 2334678888888887 2220 11246788
Q ss_pred cEEEeeeeec-----cceEEeccCCCCCcEEEeeccccchHHHH---Hhh--cCCCCccEEecccccccc----cccc--
Q 015171 232 NALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWLC---NGI--SKLPLLEYLSMTKCHKLT----SVRI-- 295 (412)
Q Consensus 232 ~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~--~~~~~L~~L~l~~c~~l~----~l~~-- 295 (412)
+.|+++++.. ..+...+..+++|++|++++|.+.+.... ..+ ..+++|+.|++++|.... .++.
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 9999888772 22334567788999999999888775332 333 237889999999874333 2433
Q ss_pred --cccccceEEEecCccc
Q 015171 296 --SSPCLKTLILECCDKL 311 (412)
Q Consensus 296 --~~~~L~~L~l~~c~~l 311 (412)
.+++|++|++++|..-
T Consensus 299 ~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHCTTCCEEECTTSBSC
T ss_pred HhcCCCceEEEccCCcCC
Confidence 3588999999888653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=117.66 Aligned_cols=229 Identities=16% Similarity=0.141 Sum_probs=142.8
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.... ..+|. .+.++++|++|+++++.+... ..+..+++|++|+++++.+..-. ...+.++++|++
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCE
Confidence 5788888887432 24454 466788999999998876543 33567889999999888763211 113567889999
Q ss_pred EEeeccCCcce--eeccCCCCccEEEEeeCCCCceE----EEecCcccEEEeeeeeccceE-Ee--ccCCCCCcEEEeec
Q 015171 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTYLFPIE-VN--VSSCGNLKCLKFDF 261 (412)
Q Consensus 191 L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~----~~~~p~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~ 261 (412)
|++++|..... -.+..+++|+.|++++|. +..+ ...+++|++|+++++...... .. ...+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99988854321 135567889999998872 1111 125678999998887622111 11 23457899999987
Q ss_pred cccchHHHHHhhcCC---------------------------CCccEEecccccccccccc---cc--cccceEEEecCc
Q 015171 262 LPIEDEWLCNGISKL---------------------------PLLEYLSMTKCHKLTSVRI---SS--PCLKTLILECCD 309 (412)
Q Consensus 262 ~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~l~~l~~---~~--~~L~~L~l~~c~ 309 (412)
+.+.... ...+..+ ++|+.|+++++......+. .. ++|+.|++++|.
T Consensus 181 n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 7654311 1112222 4566666666432221111 12 348888888876
Q ss_pred ccce---eeccCCCeeeEEEeccee-----eecccccccceEEEEE
Q 015171 310 KLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCF 347 (412)
Q Consensus 310 ~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~ 347 (412)
.-.. ....+++|+.+.+.+... ..+.++++|+.+.+..
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 4321 123567888888877654 3567788899888853
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=106.01 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=126.3
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..+++|++|++++|.+...+....+++|+.|+++++.+++-. . +..+++|++|++++|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 346889999999998876667888999999999999884322 1 6789999999999986543334666899999999
Q ss_pred eeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 216 ~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++| .+..+. ..+++|+.|+++++..... ..+..+++|++|+++++.+... .. +..+++|+.|+++++. ++.+
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCC
Confidence 988 222221 1568999999998873332 4577899999999999988763 22 6789999999999862 3333
Q ss_pred c--ccccccceEEEecCcc
Q 015171 294 R--ISSPCLKTLILECCDK 310 (412)
Q Consensus 294 ~--~~~~~L~~L~l~~c~~ 310 (412)
+ ...++|+.|++++++.
T Consensus 194 ~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCcc
Confidence 2 2568899999998754
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=105.41 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=100.0
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
...+|..+. ++|++|+++++.+... ..+..+++|++|+++++.+.... ...+..+++|++|++++|...... .
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 345555442 5688888888766433 35667888888888887663211 112456788888888877543221 2
Q ss_pred ccCCCCccEEEEeeC--CCCceEEE-ecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeeccccchH---HHHHhhcC
Q 015171 204 LVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISK 275 (412)
Q Consensus 204 i~~l~~L~~L~i~~c--~~l~~~~~-~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~ 275 (412)
+..+++|+.|++.++ ..+....+ .+++|++|+++++.... ++..+..+++|++|+++++.+... .+.. +..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 445677888877766 22221112 45677777777665222 234566777788888877766542 1111 222
Q ss_pred CCCcc-EEecccccccccccc---cccccceEEEecCc
Q 015171 276 LPLLE-YLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 276 ~~~L~-~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
++.|. .|+++++. ++.++. ...+|+.|+++++.
T Consensus 175 L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred ccccceeeecCCCc-ccccCccccCCCcccEEECCCCc
Confidence 33333 66776642 222221 22367777776654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-11 Score=111.70 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCccccCCcc--ccCCCCeeEEEEeceeecCC--CCC--ccCcccceeEeeeEEeCHHH--HH-HHHcC
Q 015171 114 SEVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--IA-SLISG 184 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~--~~~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~~--l~-~l~~~ 184 (412)
..++.+.+.........+... ....++|++|++++|.+... ... ..+++|++|+++++.++... +. .-+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 367778777643222111111 12346799999999977543 233 78999999999999884311 11 12347
Q ss_pred CCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCce--E-----EEecCcccEEEeeeeeccceEE----eccCC
Q 015171 185 CPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--V-----EIKTSNVNALAIHQTYLFPIEV----NVSSC 251 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~--~-----~~~~p~L~~L~l~~~~~~~~~~----~~~~~ 251 (412)
+++|++|++++|...... .+..+++|+.|+++++.-... + ....|+|++|+++++....... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 899999999988653221 233467777777777631110 0 0134556666665554211011 12344
Q ss_pred CCCcEEEeeccccchHHHHHhhcCC---CCccEEecccccccccccc-cccccceEEEecCc
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKL---PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD 309 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~ 309 (412)
++|++|+++++.+.... +..+..+ ++|++|+++++. ++.++. .+++|+.|+++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp CCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC
T ss_pred CCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc
Confidence 56666666555554421 1111222 456666665532 223322 22455555555553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=109.44 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=129.4
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++.|+++.+... .+|. .+++|++|++++|.+...+. .+++|+.|+++++.++. +-...++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEE
T ss_pred CCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEE
Confidence 368999999985433 5665 56899999999987765433 67888888888876632 122357888888
Q ss_pred eeccCCcc---------eeec---------cCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCC
Q 015171 193 IRSCEGLE---------SLDL---------VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (412)
Q Consensus 193 l~~c~~~~---------~~~i---------~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 254 (412)
+++|.... .+.+ ..+++|+.|++++| .+..++...++|+.|.++++....++ ..+++|
T Consensus 148 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L 223 (622)
T 3g06_A 148 VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLP---ALPSGL 223 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred CcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence 88774321 0000 11256666666655 23333333466777777666522211 235789
Q ss_pred cEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceee---ccCCCeeeEEEeccee
Q 015171 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI 331 (412)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~ 331 (412)
+.|++++|.+.. + ...+++|+.|+++++ .++.++..+++|+.|++++|..- .++ ..+++|+.+.+.++..
T Consensus 224 ~~L~Ls~N~L~~--l---p~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 224 KELIVSGNRLTS--L---PVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CEEECCSSCCSC--C---CCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred CEEEccCCccCc--C---CCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 999999988775 2 256789999999986 55667777889999999988543 332 3567888888877643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-10 Score=99.66 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=96.4
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc--eeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~~i~~l~~L~~L 213 (412)
..+++|++|+++++.+...+....+++|++|+++++.+.+- . .+..+++|++|++++|.... .-.+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSG------- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence 44677888888888776545667788888888887755221 1 25567777777777764432 112223
Q ss_pred EEeeCCCCceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccccccc
Q 015171 214 ILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (412)
Q Consensus 214 ~i~~c~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 291 (412)
+++|++|+++++. .......+..+++|++|+++++. +.+ +. .+..+++|+.|++++|. ++
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~-i~ 172 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG-VH 172 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC-CC
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC-Cc
Confidence 3455555555554 11123456789999999999987 655 23 46789999999999974 23
Q ss_pred cc--cccccccceEEEecCc
Q 015171 292 SV--RISSPCLKTLILECCD 309 (412)
Q Consensus 292 ~l--~~~~~~L~~L~l~~c~ 309 (412)
.+ ...+++|+.|++++..
T Consensus 173 ~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC-
T ss_pred ChHHhccCCCCCEEEeeCcc
Confidence 33 2356889999998764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=106.41 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .+| .+..+++|++|+++++.+...+ ...++|++|+++++.+.. +.. +..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence 47888888775433 366 4777788888888887665322 123467777777666522 111 455666666666
Q ss_pred eccC
Q 015171 194 RSCE 197 (412)
Q Consensus 194 ~~c~ 197 (412)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=106.55 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=117.1
Q ss_pred CCCccEEEeeccCCcceeeccCCCCccEEEEeeCC--C-CceEEEecCcccEEEeeeeecc---ceEEeccCCCCCcEEE
Q 015171 185 CPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS--D-IKRVEIKTSNVNALAIHQTYLF---PIEVNVSSCGNLKCLK 258 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~--~-l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~ 258 (412)
.++|++|++++|..........+++|+.|+++++. . .......+++|+.|+++++... ..+..+..+++|+.|+
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 36799999998865332222457899999999882 1 1111235789999999988722 2223467899999999
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccccccc-cccceEEEecCcccceeec---cCCCeeeEEEeccee---
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLILECCDKLIQVEI---ETPNLSIFKYHGDLI--- 331 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~L~~L~l~~c~~l~~~~~---~~~~L~~l~~~~~~~--- 331 (412)
++++.+........+..+++|+.|+++++.....++... ++|+.|++++|.. ..++. ..++|+.+.+.+...
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l-~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCC-CCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcC-cccChhhcCCCCCCEEECCCCCCCCC
Confidence 999988763333446678999999999976545555544 6899999999843 33332 567889998887765
Q ss_pred --eecccccccceEEEEEecc
Q 015171 332 --SFSSNALSLSETSLCFSSH 350 (412)
Q Consensus 332 --~~l~~~~~L~~l~i~~~~~ 350 (412)
..+..+++|+.+.+..+..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCB
T ss_pred CHHHHhcCCCCCEEEecCCCc
Confidence 2377889999999987743
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-11 Score=107.59 Aligned_cols=189 Identities=21% Similarity=0.200 Sum_probs=127.0
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .++. .+..+++|++|+++++.+... ..+..+++|++|+++++.+..... ..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred CCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence 47888888764332 3443 567789999999999876433 357789999999999987743221 23567899999
Q ss_pred EEeeccCCcc--eeeccCCCCccEEEEeeCCCCceE-----EEecCcccEEEeeeeeccce-EEeccCCCCCc----EEE
Q 015171 191 LEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRV-----EIKTSNVNALAIHQTYLFPI-EVNVSSCGNLK----CLK 258 (412)
Q Consensus 191 L~l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~-----~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~----~L~ 258 (412)
|++++|.... ...+..+++|+.|+++++ .+..+ ...+++|++|+++++..... ...+..+++|+ .|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 9999886432 224566799999999987 22221 12568999999998872221 12344455555 889
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCc
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~ 309 (412)
++++.+... ........+|+.|+++++. ++.++. ..++|+.|++++++
T Consensus 184 ls~n~l~~~--~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 184 LSLNPMNFI--QPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCCEE--CTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCccccc--CccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 988887652 2222334589999999864 333332 35677777777653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-10 Score=116.35 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .++. +..+++|++|+|++|.+...+....+++|+.|+|+++.+.+ +. -+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLT--DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CG-GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCC--CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Cc-cccCCCccCEEEC
Confidence 45666666543221 2222 45566666666666655544555566666666666665522 11 1445666666666
Q ss_pred eccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
++|.....-.+..+++|+.|++++| ..+.. ...+++|+.|+++++....+ ..+..+++|+.|+++++.+..
T Consensus 139 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 6654332223344566666666655 11111 11345666666666552221 234556666666666555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-10 Score=103.01 Aligned_cols=169 Identities=16% Similarity=0.079 Sum_probs=91.0
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
.+++++++++++++.+...+.. -.++++.|+++++.++.... ..+..+++|++|+++++..........+++|+.|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 3455666666666655432211 12566777776665532111 124556777777777664332212234566777776
Q ss_pred eeCCCCceEE---EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccc
Q 015171 216 VNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (412)
Q Consensus 216 ~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 291 (412)
+++ .+..++ ...++|++|+++++....+. ..+..+++|++|+++++.+... ....+..+++|+.|+++++. ++
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~ 161 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT 161 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence 665 222221 23566777777666522222 2356677777777777766542 22334556777777777642 33
Q ss_pred cccc----cccccceEEEecCc
Q 015171 292 SVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 292 ~l~~----~~~~L~~L~l~~c~ 309 (412)
.++. ..++|+.|+++++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCcCCCCEEECCCCc
Confidence 3332 34567777776653
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-10 Score=107.44 Aligned_cols=225 Identities=17% Similarity=0.053 Sum_probs=121.0
Q ss_pred CCceEEEEEeCCCccccC-CccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|++..+... .+ |..+..+++|++|+++++.+... ..+..+++|++|+++++.+.. +.. ...++|++
T Consensus 54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 35666666653322 23 23455666777777776654322 345566777777776665531 110 11256777
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCC----CceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeecccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~----l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
|+++++...... .+..+++|+.|++.++.- ...-.....+|++|+++++....++.. ..++|++|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS--SCSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc--ccCCCCEEECCCCcC
Confidence 777666432211 134456777777766511 000011112666777666652222211 236788888887776
Q ss_pred chHHHHHhhcCCCCccEEecccccccccc---cccccccceEEEecCccccee---eccCCCeeeEEEeccee-----ee
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SF 333 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~-----~~ 333 (412)
.... ...+..+++|+.|+++++...... ...+++|+.|++++|..- .+ ...+++|+.+.+.+... ..
T Consensus 206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 6521 233566788888888875322211 124578888888887543 22 23556778887776544 11
Q ss_pred ccc------ccccceEEEEEe
Q 015171 334 SSN------ALSLSETSLCFS 348 (412)
Q Consensus 334 l~~------~~~L~~l~i~~~ 348 (412)
+.. ..+|+++.+..+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSS
T ss_pred ccccccccccccccceEeecC
Confidence 111 345677777554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-10 Score=101.99 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+.. ..+|. .+..+++|++|+++++.+... ..+..+++|++|+++++.+..-. ...+..+++|++
T Consensus 37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 4788888887543 24454 567799999999999877544 33567999999999998873211 133567899999
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeC
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
|+++++...... .+..+++|+.|+++++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 999988543211 2344677777777766
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=102.01 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=88.9
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC---CCCccCcccceeEee-eEEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALR-EVCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~-~~~~~~~~l~~l~~~~p~L 188 (412)
+++++|+++... ...+|.. +.++++|++|+|+++.+... ..+.++++|+++... ++.+.. .....+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence 356666666532 2245543 34566666666666643221 233455555443332 222211 001223456666
Q ss_pred cEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEEe-----cCcccEEEeeeeeccceEEeccCCCCCcEEEeec
Q 015171 189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (412)
Q Consensus 189 e~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (412)
+.|+++++...... ......++..|.+.++..+..+... ...++.|+++++....+.......++|+.|.+.+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 66666665432111 1112234555555555444444321 1245556665554222222222334556666643
Q ss_pred c-ccchHHHHHhhcCCCCccEEecccccccccccc-cccccceEEEecCccccee
Q 015171 262 L-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV 314 (412)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~ 314 (412)
+ .+.. .....+..+++|+.|+++++ .++.++. .+.+|++|.+.++.+++.+
T Consensus 187 ~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 187 NNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred CCcccC-CCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 2 2222 11223445566666666653 3444433 3555666666665555433
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-10 Score=72.25 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.4
Q ss_pred CcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-10 Score=100.66 Aligned_cols=186 Identities=14% Similarity=0.058 Sum_probs=119.4
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++++... ....+|..+. ++++.|+++++.+... ..+..+++|+.|+++++.++.-.. ...+++|++|+
T Consensus 11 ~l~~l~~~~~--~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKR--NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTS--CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCCC--CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 4566655542 2335665543 6788888888766433 346678888888888877632111 15778888888
Q ss_pred eeccCCcce-eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccch
Q 015171 193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 193 l~~c~~~~~-~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (412)
++++....- ..+..+++|+.|+++++ .+..+. ..+++|++|+++++....+.. .+..+++|+.|+++++.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888754321 12345688888888877 233222 146788999988877322222 35678899999999888775
Q ss_pred HHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcc
Q 015171 267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (412)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~ 310 (412)
- ....+..+++|+.|+++++ .++.++. ..++|+.+++.+++.
T Consensus 163 l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 L-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred c-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 2 2234567889999999885 3334443 335677887776554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-10 Score=106.63 Aligned_cols=212 Identities=11% Similarity=0.009 Sum_probs=117.7
Q ss_pred cCCCCeeEEEEeceeecCCC------CCccCc-ccceeEeeeEEeCH---HHHHHHHcCC-CCccEEEeeccCCccee--
Q 015171 136 FYVESLHVLELSYCKLQQPS------ENVKLF-SLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~~~~~~-- 202 (412)
...++|++|++++|.+.... ....++ +|++|+|+++.+++ ..+...+... ++|++|++++|......
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 33455777777777664431 234556 77777777777733 3344444444 77888888777533211
Q ss_pred ----eccCC-CCccEEEEeeCCCCceEEE--------e-cCcccEEEeeeeecc-----ceEEeccCCC-CCcEEEeecc
Q 015171 203 ----DLVNL-SNLKEIILVNTSDIKRVEI--------K-TSNVNALAIHQTYLF-----PIEVNVSSCG-NLKCLKFDFL 262 (412)
Q Consensus 203 ----~i~~l-~~L~~L~i~~c~~l~~~~~--------~-~p~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~L~l~~~ 262 (412)
.+..+ ++|+.|++++|. +..... . .++|++|+++++... .+...+...+ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 12233 678888887772 222211 1 247788887776621 1111223344 7888888777
Q ss_pred ccchH---HHHHhhcCCC-CccEEecccccccc----cccc----cccccceEEEecCcccc-------eeeccCCCeee
Q 015171 263 PIEDE---WLCNGISKLP-LLEYLSMTKCHKLT----SVRI----SSPCLKTLILECCDKLI-------QVEIETPNLSI 323 (412)
Q Consensus 263 ~~~~~---~~~~~~~~~~-~L~~L~l~~c~~l~----~l~~----~~~~L~~L~l~~c~~l~-------~~~~~~~~L~~ 323 (412)
.+.+. .+...+..++ +|+.|+++++.-.. .++. ..++|+.|++++|..-. ......++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 76542 2333445553 78888887753211 1221 23477888887765421 11234567777
Q ss_pred EEEeccee------------eecccccccceEEEEEe
Q 015171 324 FKYHGDLI------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 324 l~~~~~~~------------~~l~~~~~L~~l~i~~~ 348 (412)
+.+.++.. ..+.+.++|+.++++.+
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 77777651 23445666777776554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-10 Score=98.72 Aligned_cols=142 Identities=16% Similarity=0.224 Sum_probs=71.2
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..+++|++|+++++.+...+....+++|+.|+++++.+++-. . +..+++|++|++++|....--.+.. ++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence 345666666666665554445556666666666666552211 1 4566666666666664322111112 45555555
Q ss_pred eeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 216 ~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++| .+..+. ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+. ..+..+++|+.|++++
T Consensus 114 ~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 114 DNN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CSS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred cCC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCC
Confidence 554 111110 1234455555554441111 1345556666666666655542 2344556666666655
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-09 Score=96.16 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=56.3
Q ss_pred ceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 116 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.+++++.. .....+|..+. +++++|+++++.+... ..+..+++|++|+|+++.+.... ...+..+++|++|++
T Consensus 16 ~~~l~~~~--~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQG--KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTT--CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CeEEecCC--CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEEC
Confidence 34444433 23345555443 5788888888776543 34567788888888877663211 122456777888888
Q ss_pred eccCCccee--eccCCCCccEEEEeeC
Q 015171 194 RSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
+++...... .+..+++|+.|+++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC
Confidence 776543211 1233456666666554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-09 Score=105.09 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=117.2
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
..+++.|+++.+... .+|..++ ++|++|+++++.+...+ ..+++|+.|+++++.++. +.. +. .+|+.|+
T Consensus 58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence 458889988875433 4776553 78999999998876444 668899999999887733 222 22 2899999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHh
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (412)
+++|.... +.- .+++|+.|+++++ .+..++...++|+.|+++++....++. +. ++|+.|++++|.+.. ++.
T Consensus 127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~- 197 (571)
T 3cvr_A 127 VDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA- 197 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC-
T ss_pred CCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh-
Confidence 98885433 222 4678999999887 233333356789999998887333333 33 789999998888764 222
Q ss_pred hcCCCCc-------cEEecccccccccccc---cccccceEEEecCccc
Q 015171 273 ISKLPLL-------EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL 311 (412)
Q Consensus 273 ~~~~~~L-------~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l 311 (412)
+.. +| +.|+++++ .++.++. ..++|+.|++++++..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence 221 55 88888875 3334433 3678888888887663
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-10 Score=99.44 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=115.9
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
.+++.++++++.+...+....+++|+.|+++++.++.- . -+..+++|++|++++|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 34555555555554334567889999999999887322 2 25778999999999986543323667899999999988
Q ss_pred --CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc--
Q 015171 219 --SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-- 294 (412)
Q Consensus 219 --~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-- 294 (412)
..+..+.. ++|+.|+++++..... ..+..+++|+.|+++++.+.+- . .+..+++|+.|+++++.. ..+.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i-~~~~~l 168 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEI-TNTGGL 168 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCC-CBCTTS
T ss_pred ccCCcCcccc--CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcC-cchHHh
Confidence 33332222 8999999999873332 2578899999999999988773 2 467789999999998632 2222
Q ss_pred ccccccceEEEecCcc
Q 015171 295 ISSPCLKTLILECCDK 310 (412)
Q Consensus 295 ~~~~~L~~L~l~~c~~ 310 (412)
..+++|+.|++++++.
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 2567899999988754
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-09 Score=91.00 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCeeEEEEeceeec--CC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 139 ESLHVLELSYCKLQ--QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 139 ~~L~~L~L~~~~~~--~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
++|++|++++|.+. .. .....+++|+.|+++++.+... ..+..+++|++|++++|.....+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~------------- 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGL------------- 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCC-------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHH-------------
Confidence 56777777777664 22 3345667777777776655322 22445555555555555332211
Q ss_pred eeCCCCceEEEecCcccEEEeeeeeccce--EEeccCCCCCcEEEeeccccchHHH--HHhhcCCCCccEEeccccc
Q 015171 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 216 ~~c~~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~ 288 (412)
..+...+++|++|+++++....+ ...+..+++|+.|+++++.+..... ...+..+++|+.|++.+|.
T Consensus 88 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 88 ------DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 00001234444555444441111 1345667778888887777655211 1345667778888777753
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=95.60 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=138.6
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
...++|..+ .+++++|+|+++.+... ..+.++++|++|+|+++.+....-...+.++++|.++.+.++..+..+
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 344667655 36899999999877543 346789999999999986521111123467788887766666555554
Q ss_pred -eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeec-cceE-EeccCC-CCCcEEEeeccccchHHHHHhhc
Q 015171 203 -DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYL-FPIE-VNVSSC-GNLKCLKFDFLPIEDEWLCNGIS 274 (412)
Q Consensus 203 -~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 274 (412)
.+..+++|+.|++.++ .+..+. ....++..+.+.++.. ..+. ..+..+ ..++.|+++++.+.. +...+.
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f 174 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAF 174 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSS
T ss_pred hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhc
Confidence 2455789999999887 222221 2345667777765431 1111 123333 468889999888765 333333
Q ss_pred CCCCccEEecccccccccccc----cccccceEEEecCcccceeec-cCCCeeeEEEeccee----eecccccccceEEE
Q 015171 275 KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (412)
Q Consensus 275 ~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~-~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i 345 (412)
...+|+.|.+.++..++.++. ..++|+.|+++++. +..++. ...+|+.|...+... ..+.++++|+.+.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 456899999988777777764 45789999999874 434432 355677777665543 44567778888887
Q ss_pred EE
Q 015171 346 CF 347 (412)
Q Consensus 346 ~~ 347 (412)
..
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=93.81 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEe
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV 216 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~ 216 (412)
.+.+++++++..+...+.. -.++|+.|+|+++.+..... ..+..+++|++|+++++...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567788888766543322 22689999999887732211 22567899999999887543221 13446777777777
Q ss_pred eCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 217 ~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++ .+..+. ..+++|++|+++++....+.. .+..+++|++|+++++.+... ....+..+++|+.|++++
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCC
Confidence 65 222221 123455555555554211111 134455555555555544431 111233445555555554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-10 Score=90.28 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=25.6
Q ss_pred CCeeEEEEeceeec---CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeecc
Q 015171 139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (412)
Q Consensus 139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 196 (412)
++|++|++++|.+. .+.....+++|+.|+++++.+... ..+..+++|++|++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence 45666666666554 112334555555555555544221 22334444444444444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=102.20 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=77.6
Q ss_pred cCcccEEEeeeeec-cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc-c---ccccccce
Q 015171 228 TSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-R---ISSPCLKT 302 (412)
Q Consensus 228 ~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~---~~~~~L~~ 302 (412)
.++++.++++.+.. ......+..+++|+.|+++++.......+..+..+++|+.|+++++. ++.+ + ...++|+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCE
Confidence 34555555555441 11112345567777777777664443333445667788888888763 3332 2 24567888
Q ss_pred EEEecCcccc---eeeccCCCeeeEEEeccee-----eecccc-cccceEEEEEeccchh-hHHHHHHHHH
Q 015171 303 LILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 303 L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i~~~~~~~~-~~~~~~~~~~ 363 (412)
|+|+++.... .....+++|+.|.+.+... ..+.+. ++|+.|.+..+.-.|. ...|+.+.++
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 8887764321 1123456778887776654 344454 6799999877644443 4456655544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-09 Score=86.48 Aligned_cols=104 Identities=26% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|+++++.+... +...+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 479999998865443478888888999999999999876666778899999999999988432 4445667999999999
Q ss_pred eccCCcce---eeccCCCCccEEEEeeC
Q 015171 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~---~~i~~l~~L~~L~i~~c 218 (412)
++|..... -.+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 99854321 12334556666666554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=88.35 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=50.2
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i 204 (412)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.+..- ....+..+++|++|++++|...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3455433 35788888888766543 2345778888888877766311 1122456777788877776432111 12
Q ss_pred cCCCCccEEEEeeC
Q 015171 205 VNLSNLKEIILVNT 218 (412)
Q Consensus 205 ~~l~~L~~L~i~~c 218 (412)
..+++|+.|+++++
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 33456666666554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=82.12 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=73.6
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEe-CHHHHHHHHcC---CCCccEEEeeccCCcce
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISG---CPLIEYLEIRSCEGLES 201 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~l~~c~~~~~ 201 (412)
...+|.....-..|++|++++|.+... .....|++|++|+|++|.. +|.++..+... |++|++|+|++|..+++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 446666444456799999999986443 3456899999999999974 99999987763 68999999999988764
Q ss_pred e---eccCCCCccEEEEeeCCCCce
Q 015171 202 L---DLVNLSNLKEIILVNTSDIKR 223 (412)
Q Consensus 202 ~---~i~~l~~L~~L~i~~c~~l~~ 223 (412)
- .+..+++|++|++++|+.++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 3 244578999999999866654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-09 Score=84.75 Aligned_cols=104 Identities=30% Similarity=0.310 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|++|+++++.+... +...+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 478999988765443478888888999999999999887666778899999999999988432 4455667999999999
Q ss_pred eccCCcce---eeccCCCCccEEEEeeC
Q 015171 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~---~~i~~l~~L~~L~i~~c 218 (412)
++|..... ..+..+++|+.|++++|
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99864321 22344566666666655
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.9e-09 Score=89.11 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=86.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
.++...+.+..+....+|..+..+++|++|+++++.+...+....+++|+.|+++++.+. .+...+..+|+|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECc
Confidence 445555554333444555567778888888888887765556667788888888888774 122233445677777777
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceE--EeccCCCCCcEEEeeccccchHH----
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEW---- 268 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~---- 268 (412)
+|....--.+. .+++|+.|+++++...... ..+..+++|++|+++++.+....
T Consensus 102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 66321100111 2445556666555422111 24567888888888887765431
Q ss_pred -----HHHhhcCCCCccEEe
Q 015171 269 -----LCNGISKLPLLEYLS 283 (412)
Q Consensus 269 -----~~~~~~~~~~L~~L~ 283 (412)
....+..+++|+.|+
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC
T ss_pred chHHHHHHHHHhCCCcEEEC
Confidence 123456678888876
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.9e-08 Score=96.78 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=113.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .+| ..+++|++|++++|.+...+... .+|+.|+++++.++. +.. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~--~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELP--ASLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhh--cCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 57999999875443 566 34789999999999876543322 299999999998743 222 6899999999
Q ss_pred eccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCC-------cEEEeecccc
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL-------KCLKFDFLPI 264 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~ 264 (412)
++|.... +.- .+++|+.|++++| ..+.. +. ++|+.|+++++....++. +.. +| +.|++++|.+
T Consensus 148 s~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 148 DNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred CCCccCc-CCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 9986432 222 3589999999998 33333 22 899999999987333333 332 66 9999999988
Q ss_pred chHHHHHhhcCCCCccEEeccccccccccc
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 294 (412)
.. ++..+..+++|+.|++++++....++
T Consensus 220 ~~--lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 220 TH--IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ee--cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 75 44445569999999999975444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-08 Score=87.69 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=90.8
Q ss_pred EEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCC
Q 015171 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (412)
Q Consensus 143 ~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~ 220 (412)
.++.++..+...+ ..-.++|++|+++++.++.. ....+..+++|++|+++++...... .+..+++|+.|+++++ .
T Consensus 11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence 3444444433222 23356899999999877421 1223567899999999987543211 1345688888888877 2
Q ss_pred CceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc
Q 015171 221 IKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295 (412)
Q Consensus 221 l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 295 (412)
+..+. ...++|++|+++++....... .+..+++|++|+++++.+... ....+..+++|+.|++++++-. .
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----C 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----C
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----c
Confidence 22222 135677777777665222111 245667777777777666541 2223455677777777764221 2
Q ss_pred cccccceEEEecCc
Q 015171 296 SSPCLKTLILECCD 309 (412)
Q Consensus 296 ~~~~L~~L~l~~c~ 309 (412)
.+++|+.|+++.+.
T Consensus 163 ~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 163 TCPGIRYLSEWINK 176 (208)
T ss_dssp CTTTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 33455555554443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-08 Score=83.68 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=60.4
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCc-ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.++.+|++|+++++.+...+....+. +|+.|+++++.++.- ..+..+++|++|++++|..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l---------------- 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---------------- 76 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC----------------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc----------------
Confidence 44667777777777655333333333 566666665544221 1233444444444444422
Q ss_pred EeeCCCCceEE----EecCcccEEEeeeeeccceEE--eccCCCCCcEEEeeccccchH--HHHHhhcCCCCccEEeccc
Q 015171 215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 215 i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 286 (412)
..+. ..+++|++|+++++....+.. .+..+++|+.|+++++.+... .....+..+++|+.|++++
T Consensus 77 -------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 77 -------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -------cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 1111 123444444444443111111 345566677777766665431 0111345566677776665
Q ss_pred c
Q 015171 287 C 287 (412)
Q Consensus 287 c 287 (412)
+
T Consensus 150 n 150 (176)
T 1a9n_A 150 V 150 (176)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=6e-08 Score=90.66 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCC----CceEE-EecCcccEEEeeeee----ccc-e--
Q 015171 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD----IKRVE-IKTSNVNALAIHQTY----LFP-I-- 244 (412)
Q Consensus 177 ~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~----l~~~~-~~~p~L~~L~l~~~~----~~~-~-- 244 (412)
.+..++..+|+|++|.|+++.......+. +++|++|++..|.- +..+. ..+|+|++|+++... ... .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 35567888999999999987443222232 58999999987721 11111 157999999986321 010 0
Q ss_pred ---EEeccCCCCCcEEEeeccccchHHHHHhh--cCCCCccEEeccccccccc-----cc---ccccccceEEEecCc
Q 015171 245 ---EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTS-----VR---ISSPCLKTLILECCD 309 (412)
Q Consensus 245 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~---~~~~~L~~L~l~~c~ 309 (412)
......+|+|++|++.++.+.+.....++ ..+|+|++|+|+.+ .++. +. ..+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11123589999999998888764433333 35788999999764 3332 22 135778888887764
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.8e-08 Score=84.11 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.+..-. ...+..+++|+.|++++|......
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChh
Confidence 3445565443 7788888888776543 34567788888888887762111 122456777888888777432111
Q ss_pred eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
.+..+++|+.|+++++ ....++..+..+++|+.|+++++.+..- ....+..+++|+.|
T Consensus 107 ~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHA 164 (229)
T ss_dssp TTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred HhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEE
Confidence 1233455555555544 3112222344556666666666655431 11234455666666
Q ss_pred eccc
Q 015171 283 SMTK 286 (412)
Q Consensus 283 ~l~~ 286 (412)
++.+
T Consensus 165 ~l~~ 168 (229)
T 3e6j_A 165 YLFG 168 (229)
T ss_dssp ECTT
T ss_pred EeeC
Confidence 6665
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-08 Score=98.20 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=126.9
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
..++.+.+...... -+.....+++|+.|+++.+.+... .....+.+|+.|++..+.... ....+..++.|+
T Consensus 349 ~~L~~l~l~~n~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~ 423 (635)
T 4g8a_A 349 KSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLE 423 (635)
T ss_dssp TTCCEEEEESCCSC---CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCC
T ss_pred hhhhhcccccccCC---CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc--cccccccccccc
Confidence 46777777763221 122334678899999988654321 233456788888887665411 111245678888
Q ss_pred EEEeeccCCccee---eccCCCCccEEEEeeCCCCceE----EEecCcccEEEeeeee--ccceEEeccCCCCCcEEEee
Q 015171 190 YLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 190 ~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~----~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~ 260 (412)
.+.+..+...... .+..+++++.++++.+ .+..+ ....++|+.|+++++. ....+..+..+++|++|+++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred chhhhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 8888766443221 2334567777777665 11111 1135678888888775 22223456778888899998
Q ss_pred ccccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccceee---ccC-CCeeeEEEeccee
Q 015171 261 FLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQVE---IET-PNLSIFKYHGDLI 331 (412)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~~---~~~-~~L~~l~~~~~~~ 331 (412)
++.+... .+..+.++++|+.|+|+++. ++.++ ...++|+.|+++++......+ ... ++|+.+.+.+.+.
T Consensus 503 ~N~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 503 QCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCccCCc-ChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8877652 23446678888999888853 33332 245788888888876532211 122 4688888777543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-07 Score=85.40 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=105.5
Q ss_pred CCceeEEEEEecCCCC--CChhhHHHHHHH-HHhCCceEEEEEeCCCc--------cccCCccccCCCCeeEEEEecee-
Q 015171 83 ISIKKFSLELDLINSP--ENASLAGRCLGL-AIESEVKELVLVHWRSE--------RRNLPEIIFYVESLHVLELSYCK- 150 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~--~~~~~~~~~l~~-~~~~~l~~L~l~~~~~~--------~~~lp~~~~~~~~L~~L~L~~~~- 150 (412)
..++.+.+.... ++ .....+..+... ...++++.|.+...... ...+...+..+++|++|.|+++.
T Consensus 107 ~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred hhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 356666655332 11 111234444432 23469999988652111 11244445678999999998873
Q ss_pred ecCCCCCccCcccceeEeeeEEeCHHHHHHHHc-CCCCccEEEeeccCCc--ce---------eeccCCCCccEEEEeeC
Q 015171 151 LQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGL--ES---------LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 151 ~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~--~~---------~~i~~l~~L~~L~i~~c 218 (412)
...++ ...++|++|+|..+.++++.+..+.. .+|+|+.|.|..+... .. +....+|+|+.|.+.+|
T Consensus 185 l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 33222 34899999999988888888877653 7999999998642111 11 11112455666655544
Q ss_pred CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccccc
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCH 288 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~ 288 (412)
...... .......+.+|+|++|+|+.+.+.+.....+. ..+++|+.|+++.|.
T Consensus 263 ~i~~~~-----------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 263 EEQNVV-----------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTHHHH-----------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCchHH-----------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111000 00001113467888888887777775443332 446788888887763
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-08 Score=82.55 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.++++|+++.+... .+|......++|++|+++++.+........+++|++|+++++.++.- ...++..+|+|++|++
T Consensus 19 ~~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCc--hhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC
Confidence 47899988875443 44543333459999999999776556778899999999999988421 1123467899999999
Q ss_pred eccCCccee---eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE----eccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 266 (412)
++|.....- .+..+++|+.|++++ +.....+. .+..+++|+.|+++.+....
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~---------------------N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILR---------------------NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCS---------------------SGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecC---------------------CCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 988542111 122345555555544 43111111 25678889999988877655
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-08 Score=83.96 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
..+|..+. +.+++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|++|+++++...... .
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence 34565442 4567788877765432 22556777777777776653211 112455667777777766432211 1
Q ss_pred ccCCCCccEEEEeeC
Q 015171 204 LVNLSNLKEIILVNT 218 (412)
Q Consensus 204 i~~l~~L~~L~i~~c 218 (412)
+..+++|+.|+++++
T Consensus 101 ~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 101 FKGLESLKTLMLRSN 115 (220)
T ss_dssp GTTCSSCCEEECTTS
T ss_pred hcCCcCCCEEECCCC
Confidence 333455555555544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-07 Score=82.11 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=52.4
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.+.... ...+.++++|++|+++++....-.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHh
Confidence 3345565443 6788888888766432 35667788888888877663211 122456778888888777432111
Q ss_pred eccCCCCccEEEEeeC
Q 015171 203 DLVNLSNLKEIILVNT 218 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c 218 (412)
.+..+++|+.|+++++
T Consensus 99 ~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNAN 114 (220)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HccCCCCCCEEECCCC
Confidence 1233456666666554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=82.51 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=88.9
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee---ccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~l~~L~~L~i~~c 218 (412)
+.++.++..+...+. .-.++|+.|+|+++.+.... ...+..+++|++|+++++.. ..+. +..+++|+.|++
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~L--- 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL--- 95 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC---
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEEC---
Confidence 456665555543322 22378888888888773211 12345678888888887754 2221 223444555544
Q ss_pred CCCceEEEecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--- 294 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--- 294 (412)
+++....+. ..+..+++|+.|+++++.+.. ++..+..+++|+.|+++++ .+..++
T Consensus 96 ------------------s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~ 154 (229)
T 3e6j_A 96 ------------------GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGA 154 (229)
T ss_dssp ------------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred ------------------CCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCHHH
Confidence 444311111 235678999999999999874 4445678899999999985 334443
Q ss_pred -ccccccceEEEecCcc
Q 015171 295 -ISSPCLKTLILECCDK 310 (412)
Q Consensus 295 -~~~~~L~~L~l~~c~~ 310 (412)
...++|+.|++.+++.
T Consensus 155 ~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTCTTCCEEECTTSCB
T ss_pred HhCCCCCCEEEeeCCCc
Confidence 2467899999988654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-07 Score=86.84 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCeeEEEEeceeecCC--CCCc-cCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 139 ESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
+.++.|+|+++.+... ..+. .+++|+.|+|+++.+..-. ...+..+++|++|+|++|...... .+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3466666666654322 2222 5666666666666552111 112345666666666666432111 13345666666
Q ss_pred EEeeCCCCceEE----EecCcccEEEeeeeeccceEEec----cCCCCCcEEEeeccccchHHHHHhhcCCCC--ccEEe
Q 015171 214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNV----SSCGNLKCLKFDFLPIEDEWLCNGISKLPL--LEYLS 283 (412)
Q Consensus 214 ~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~ 283 (412)
+++++ .+..+. ..+++|+.|+++++....+.... ..+++|+.|+++++.+..-. ...+..+++ ++.|+
T Consensus 118 ~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEE
T ss_pred ECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEE
Confidence 66655 222221 13456666666665522211111 34666777777666655411 112233443 35566
Q ss_pred ccc
Q 015171 284 MTK 286 (412)
Q Consensus 284 l~~ 286 (412)
+.+
T Consensus 196 l~~ 198 (361)
T 2xot_A 196 LHN 198 (361)
T ss_dssp CCS
T ss_pred ecC
Confidence 655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-08 Score=96.06 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHhCCceEEEEEeCCCccc---cCCcccc-CCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHH-
Q 015171 111 AIESEVKELVLVHWRSERR---NLPEIIF-YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLI- 182 (412)
Q Consensus 111 ~~~~~l~~L~l~~~~~~~~---~lp~~~~-~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~- 182 (412)
.+.+.+++|+++.+..... .+...+. .+++|++|+|++|.+... .....+++|+.|+|++|.+++.+...+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3445677777665432211 1111112 225666666666655322 2223455666666666666554443322
Q ss_pred ---cCCCCccEEEeeccC
Q 015171 183 ---SGCPLIEYLEIRSCE 197 (412)
Q Consensus 183 ---~~~p~Le~L~l~~c~ 197 (412)
..++.|++|++++|.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHSTTCCCCEEECCSSC
T ss_pred HHHhcCCccceeeCCCCC
Confidence 245566666666653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-07 Score=81.06 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=53.4
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEE
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALA 235 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~ 235 (412)
.++.|+|+++.++.......+..+++|++|+++++...... .+..+++|+.|+++++ .+..+. ..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 44555555554422111112344555555555555322111 1333455555555554 111111 1245555555
Q ss_pred eeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 236 IHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 236 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++++..... ...+..+++|+.|+++++.+... .+..+..+++|+.|++++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecC
Confidence 555541111 12344555555555555554431 122334455555555555
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-08 Score=84.73 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=43.4
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
+++|+.|+++++....+. .+..+++|+.|+++++.+........+..+++|+.|++++++
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 467888888877633222 466788999999998888763322346778999999998864
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-07 Score=74.26 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred cccEEEeeeee-ccceEEeccCCCCCcEEEeeccc-cchHHHHHhhcC---CCCccEEecccccccccccc----ccccc
Q 015171 230 NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 230 ~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
+|+.|+++++. .+.....+.+|++|++|+|++|. +++..+..+... +++|++|+|++|..+++-.. .+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555554 11112234677888888888774 777766665542 45788888888877665322 56788
Q ss_pred ceEEEecCcccc
Q 015171 301 KTLILECCDKLI 312 (412)
Q Consensus 301 ~~L~l~~c~~l~ 312 (412)
++|+|++|+.+.
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888887653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.2e-09 Score=102.28 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=110.5
Q ss_pred cCCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEe------------CHHHHHHHHcCCCCccEEE-eeccCC--c
Q 015171 136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L 199 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-l~~c~~--~ 199 (412)
..+++|+.|+|+++.+.. |...+.|++|+.|+++++.. ........+..+++|+.|+ ++.+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 567889999999887643 25567788888888865531 0112233455667777776 333210 0
Q ss_pred cee-----eccC--CCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 200 ESL-----DLVN--LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 200 ~~~-----~i~~--l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
... .+.. ...|+.|+++++ ..+.. ...+++|+.|+++++....++..++.+++|+.|++++|.+.. ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 1111 146888888877 23332 125678899999888744555677889999999999888876 44
Q ss_pred HhhcCCCCccEEecccccccccc--cc---cccccceEEEecCcc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV--RI---SSPCLKTLILECCDK 310 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l--~~---~~~~L~~L~l~~c~~ 310 (412)
.+..+++|+.|+++++. ++.+ +. .+++|+.|+++++..
T Consensus 503 -~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 46778999999998853 3333 22 567889999988764
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-07 Score=85.19 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=104.5
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHc-CCCCccEEEeeccCCccee--eccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
+.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|+.|++++|...... .+..+++|+.|+++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666665544322 2235689999999887432222 233 7899999999988543221 2556789999999887
Q ss_pred CCCceEEE----ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccccccc
Q 015171 219 SDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHKL 290 (412)
Q Consensus 219 ~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~l 290 (412)
.+..+.. .+++|+.|+++++....+ ...+..+++|+.|+++++.+..- ....+ ..+++|+.|+++++ .+
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~L~~N-~l 175 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSN-KL 175 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEECCSS-CC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEECCCC-CC
Confidence 3444432 457899999988873222 23467789999999998887651 11222 45789999999884 33
Q ss_pred ccccc----cccc--cceEEEecCcc
Q 015171 291 TSVRI----SSPC--LKTLILECCDK 310 (412)
Q Consensus 291 ~~l~~----~~~~--L~~L~l~~c~~ 310 (412)
+.++. ..+. ++.|++.+++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 44432 2233 47788877543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-07 Score=80.39 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=42.3
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcce--eeccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~l~~L~~L~i~~c 218 (412)
+.+++++..+...+.. -.++|+.|+++++.+..-. ...+..+++|++|+++++..... -.+..+++|+.|+++++
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555554433221 1267888888887763211 11245678888888887754321 12344566777766655
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-06 Score=80.50 Aligned_cols=89 Identities=17% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccc-eEEEecCccccee----eccCCCe
Q 015171 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK-TLILECCDKLIQV----EIETPNL 321 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~-~L~l~~c~~l~~~----~~~~~~L 321 (412)
+++|+.+++..+.+..- ....+.+|++|+.+++.+ +++.++. .+++|+ .+++.. .+..+ ...+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 67777777766554431 123355677777777765 2444433 445566 666655 33222 2345566
Q ss_pred eeEEEeccee-----eecccccccceEE
Q 015171 322 SIFKYHGDLI-----SFSSNALSLSETS 344 (412)
Q Consensus 322 ~~l~~~~~~~-----~~l~~~~~L~~l~ 344 (412)
+.+.+.+... ..+.++++|+++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666644332 4555666666654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-08 Score=90.86 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=99.1
Q ss_pred CCeeEEEEeceeecCC------CC-CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcce----e--ec-
Q 015171 139 ESLHVLELSYCKLQQP------SE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----L--DL- 204 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~------~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~----~--~i- 204 (412)
++|++|++++|.+... .. ....++|+.|+|++|.+++..+..+...+++|++|++++|..... + .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5688888888876432 01 123468888888888888877777777777888888888854211 1 11
Q ss_pred cCCCCccEEEEeeCCCCce-----EE---EecCcccEEEeeeeeccc-----eEEeccCCCCCcEEEeeccccchHHHH-
Q 015171 205 VNLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFP-----IEVNVSSCGNLKCLKFDFLPIEDEWLC- 270 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~-----~~---~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~- 270 (412)
...++|+.|++++|. +.. +. ...++|++|+++++.... +...+...++|++|++++|.+.+....
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 224788888888872 221 11 135788888888876111 122345677899999999988875433
Q ss_pred --HhhcCCCCccEEeccccc
Q 015171 271 --NGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 271 --~~~~~~~~L~~L~l~~c~ 288 (412)
..+...++|++|+++++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 334456889999998864
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=77.29 Aligned_cols=37 Identities=35% Similarity=0.666 Sum_probs=34.4
Q ss_pred ccCCCCCHHHHHHHHccCChHHHH-HHhhhhhchhhhc
Q 015171 10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVW 46 (412)
Q Consensus 10 D~is~LPdevl~~Ils~L~~~~~~-~~~~vskrWr~lw 46 (412)
..+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999863
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-06 Score=86.72 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=55.7
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeee
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQT 239 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~ 239 (412)
.|+.|+|+++.++. +.. +..+++|+.|++++|... .+ .+..+++|+.|+++++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N--------------------- 496 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN--------------------- 496 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS---------------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC---------------------
Confidence 57788888877632 233 567788888888877442 11 2333455555555443
Q ss_pred eccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 240 YLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
....++ .++.+++|+.|++++|.+.....+..+..+++|+.|+++++
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 211112 34556666666666666554211333455666666666654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-06 Score=76.63 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
++.||+||+.+||+||+++|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999963
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-07 Score=93.94 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=27.9
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchH
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++|++|+++++....++..+..+++|+.|+|++|.+...
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 4566666666665334445577888899999988887753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-05 Score=67.79 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=61.3
Q ss_pred ccCCccccCCCCeeEEEEeceeecCCC---CCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
..+|..+.. +|++|+++++.+...+ .+..+++|++|+|+++.++... ...+..+++|++|+++++...... .
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence 456654433 7888888887664432 2567777888887777663211 122455677777777766432211 1
Q ss_pred ccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccc
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
+..+++|+.|++ +++.... .+..+..+++|++|+++++.+.
T Consensus 98 ~~~l~~L~~L~L---------------------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNL---------------------YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEEC---------------------CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEEC---------------------CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 222344444444 4333111 1223456677777777766654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.3e-06 Score=86.52 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred HcCCCCccEEEeeccCCcce-eeccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCCCCCcEE
Q 015171 182 ISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257 (412)
Q Consensus 182 ~~~~p~Le~L~l~~c~~~~~-~~i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L 257 (412)
+..++.|+.|+|++|....- -.+..+++|+.|+++++ .+..++ ..+++|+.|+++++....++..+..+++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 45566667777666643210 01223566777777665 222222 14677888888887744556677889999999
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+|++|.+.. ++..+..+++|+.|+|+++..
T Consensus 299 ~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 299 YFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred ECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence 999998864 444477889999999998643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-06 Score=80.04 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=37.8
Q ss_pred CCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 7 ~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
-..|.|+.||+|++.+||+||+.++++++++|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999999999976443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.2e-05 Score=66.37 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=48.4
Q ss_pred CCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEE
Q 015171 139 ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i 215 (412)
++|++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+.++++|++|+++++...... .+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3555555555544322 23445555666666555552111 111344556666666555322111 1333556666666
Q ss_pred eeCCCCceEEE----ecCcccEEEeeeee
Q 015171 216 VNTSDIKRVEI----KTSNVNALAIHQTY 240 (412)
Q Consensus 216 ~~c~~l~~~~~----~~p~L~~L~l~~~~ 240 (412)
+++ .+..+.. ..++|+.|++.++.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 555 2222211 34677777777665
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.1e-05 Score=65.41 Aligned_cols=114 Identities=19% Similarity=0.119 Sum_probs=63.9
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i 204 (412)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|+++++...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHh
Confidence 3455433 25788888888766543 2345677888888877766311 1122356677777777766432111 11
Q ss_pred cCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccch
Q 015171 205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (412)
..++ +|++|+++++....+.. .+..+++|++|+++++.+..
T Consensus 97 ~~l~---------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 97 DKLT---------------------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCT---------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hCCc---------------------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 2234 44444444444111111 24667889999998887654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.5e-05 Score=66.31 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=71.6
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~ 219 (412)
+.++++++.+...+ ....++|+.|+++++.+..- ....+..+++|++|+++++...... .+..+
T Consensus 10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------ 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL------------ 75 (177)
T ss_dssp TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC------------
T ss_pred CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCC------------
Confidence 45666665544322 22346788888887766311 1122456677777777766432110 01223
Q ss_pred CCceEEEecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 220 DIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 220 ~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
++|+.|+++++...... ..+..+++|+.|+++++.+..- ....+..+++|+.|++++++
T Consensus 76 ---------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 76 ---------TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ---------CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 44555555544411111 1356789999999999988742 23345678999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.2e-05 Score=74.18 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=36.8
Q ss_pred cCCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 6 ~~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
....|.++.||+|++.+||+||+.++++++++|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3457999999999999999999999999999999999863
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.6e-05 Score=65.95 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=78.8
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~ 219 (412)
+.++++++.+...+. .-.++|+.|+++++.++. +...+..+++|+.|+++++...... .+..+++|+.|+++++
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 456666655543322 224689999999887742 2234677889999999888543221 2455788999999887
Q ss_pred CCceEEE----ecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccc
Q 015171 220 DIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 220 ~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 265 (412)
.+..+.. ..++|+.|+++++....+.. .+..+++|+.|+++++.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 2333321 45789999998887333222 3567889999999877654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=97.60 E-value=8.4e-05 Score=70.42 Aligned_cols=195 Identities=10% Similarity=0.065 Sum_probs=102.5
Q ss_pred CCeeEEEEeceee-cCCCCCccCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccCCccee---eccCCCCcc
Q 015171 139 ESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLK 211 (412)
Q Consensus 139 ~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~ 211 (412)
.+|+.+.+...-. -....+.+|++|+.+++.++.+ ....+ .|..|+++.+... +..+ .+..|++|+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence 3566666654211 1114456677777777764433 22221 2567777776532 2222 233466777
Q ss_pred EEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch----HHHHHhhcCCCCccEEec
Q 015171 212 EIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED----EWLCNGISKLPLLEYLSM 284 (412)
Q Consensus 212 ~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l 284 (412)
.+.+.. ++..+.. ...+|+.+.+...-..-....|.+|++|+.+.+.++.... ..-...+.+|++|+.+.+
T Consensus 230 ~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 230 TIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 777754 2333322 1256777777433211112246778889988887655431 011234567888888888
Q ss_pred ccccccccccc----cccccceEEEecCc-ccc-eeeccCCCeeeEEEeccee-----eecccc-cccceEEE
Q 015171 285 TKCHKLTSVRI----SSPCLKTLILECCD-KLI-QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSL 345 (412)
Q Consensus 285 ~~c~~l~~l~~----~~~~L~~L~l~~c~-~l~-~~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i 345 (412)
.. .++.++. .+.+|+.++|...- .+. .....+ +|+.+.+.+... ..+..+ ..++++.+
T Consensus 308 ~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 308 PE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 74 3444433 45678888774321 111 122344 677777766543 223333 35666666
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=1.9e-05 Score=75.66 Aligned_cols=39 Identities=38% Similarity=0.601 Sum_probs=36.1
Q ss_pred CCcccCCCCCHH----HHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 7 LEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 7 ~~~D~is~LPde----vl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
-..|.|+.||+| ++.+||+||+.++++++++|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 457999999999 999999999999999999999999953
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.8e-05 Score=71.60 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=58.1
Q ss_pred CCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCc-EEEeeccccchHHHHHhhcCCCCccE
Q 015171 207 LSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEY 281 (412)
Q Consensus 207 l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (412)
+++|+.+++.++ .+..+.. .+++|+++.+..+-..-....|.+|++|+ .+.+.. .+.. .-...+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCE
Confidence 578888888765 3444442 46788888887653111112467888998 999975 3322 11234677899999
Q ss_pred Eecccccccccccc----cccccceEE
Q 015171 282 LSMTKCHKLTSVRI----SSPCLKTLI 304 (412)
Q Consensus 282 L~l~~c~~l~~l~~----~~~~L~~L~ 304 (412)
+++.. ..++.++. .+++|+.++
T Consensus 302 l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCC-CccCccchhhhcCCcchhhhc
Confidence 99865 23444433 456677664
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.52 E-value=4.7e-05 Score=64.25 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCccccCCc--cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++|+++.... ..++. .+..+++|++|+|+++.+... ..+..+++|+.|+|+++.+..... ..+..+++|++
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 788888877433 34444 367899999999999987654 457789999999999998843221 22467899999
Q ss_pred EEeeccCCccee--eccCCCCccEEEEee
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVN 217 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~ 217 (412)
|+++++...... .+..+++|+.|++++
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 999998653221 233345555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=5.5e-05 Score=63.43 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=20.0
Q ss_pred cCCCCCcEEEe--eccccchHH---HHHhhcCCCCccEEecccc
Q 015171 249 SSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 249 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (412)
...++|++|++ +++.+.+.. +...+...++|++|+++++
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34455666666 555555533 2233334455666666553
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00018 Score=59.28 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=47.6
Q ss_pred eEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 117 ~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+.++++. .....+|..+. ++|++|+|+++.+... ..+..+++|++|+|+++.+..- ....+..+++|++|+++
T Consensus 12 ~~l~~s~--n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSG--KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTT--SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CEEEeCC--CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECC
Confidence 3444443 23345665543 7788888888876544 3456788888888888776311 11224567778888877
Q ss_pred ccCC
Q 015171 195 SCEG 198 (412)
Q Consensus 195 ~c~~ 198 (412)
++..
T Consensus 87 ~N~l 90 (170)
T 3g39_A 87 DNQL 90 (170)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 7643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=58.72 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=41.8
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccC
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
..+|..+. ++|++|+|+++.+... ..+..+++|+.|+|+++.+..- ....+..+++|+.|+++++.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 45665543 6788888888776543 3456777888888877766321 11223566777777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00016 Score=60.48 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHhC--CceEEEEEeC-CCcc---ccCCccccCCCCeeEEEEeceeecCC------CCCccCcccceeEe
Q 015171 101 ASLAGRCLGLAIES--EVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLAL 168 (412)
Q Consensus 101 ~~~~~~~l~~~~~~--~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L 168 (412)
...+...+..+... .+++|+++.+ .... ..+...+...++|++|+|++|.+... ......++|++|+|
T Consensus 21 ~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp CCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred ccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 34455566555543 5777776654 3221 12222334456677777776655332 11223456677777
Q ss_pred eeEEeCHHHHHHH---HcCCCCccEEEe
Q 015171 169 REVCADDQAIASL---ISGCPLIEYLEI 193 (412)
Q Consensus 169 ~~~~~~~~~l~~l---~~~~p~Le~L~l 193 (412)
+++.+++++...+ +..++.|++|++
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 7666655553332 345566666666
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0032 Score=59.49 Aligned_cols=197 Identities=12% Similarity=0.154 Sum_probs=118.0
Q ss_pred CceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEe--CHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~ 190 (412)
+++++.+.. ....++.. +..|++|+.+++..+.+... .....+.+|+.+.|...-. .. ..+.+|++|++
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence 566665543 22334433 45689999999987644322 2333368899998864211 22 22568999999
Q ss_pred EEeeccCCccee---eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeecc------ceEEeccCCCCCcEE
Q 015171 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF------PIEVNVSSCGNLKCL 257 (412)
Q Consensus 191 L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L 257 (412)
+.+... +..+ .+.+ .+|+.+.+.+ .+..+.. .|++|+.+.+.++... -....|.+|++|+.+
T Consensus 231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 231 IEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp EECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 999753 3333 2333 6789888854 4444432 5789999998775421 112246789999999
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccc---eeeccC-CCeeeEEEec
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIET-PNLSIFKYHG 328 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~---~~~~~~-~~L~~l~~~~ 328 (412)
.+... +.. .-...+.+|++|+.+.|.. +++.+.. .+ +|+.+++.+..-.. .....+ .++..+.+..
T Consensus 306 ~l~~~-i~~-I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 306 EIPES-IRI-LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCTT-CCE-ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EeCCc-eEE-EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 99732 322 1123466789999999965 3444432 45 89999988764321 111223 2456665544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=54.18 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=25.8
Q ss_pred CcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++|+.|+++++....+ ...+..+++|++|+++++.+..- ....+..+++|+.|++++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCC
Confidence 3444444444441111 12244555566666655555431 122234455555555555
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=53.93 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred CcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++|+.|+++++....+ ...+..+++|+.|+++++.+..- ....+..+++|+.|++++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence 4455555555441111 12345556666666666655441 112234556666666655
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0029 Score=59.59 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=42.9
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccceee----ccCC
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE----IETP 319 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~----~~~~ 319 (412)
+..++.++.+......+.. ..+..+.+|+.+.+.. .++.++. .+.+|+.++|.. .++.+. ..+.
T Consensus 272 F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccccccceeccCceeecc----cccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 3445555555554333222 1234556666666643 2333322 334555555532 121111 2334
Q ss_pred CeeeEEEeccee----eecccccccceEEEE
Q 015171 320 NLSIFKYHGDLI----SFSSNALSLSETSLC 346 (412)
Q Consensus 320 ~L~~l~~~~~~~----~~l~~~~~L~~l~i~ 346 (412)
+|+.+.+...-. ..+.++.+|+++.+.
T Consensus 344 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 555554432211 466778888888873
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0049 Score=56.78 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=54.1
Q ss_pred cccCCccccCCCCeeEEEEec-eeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 128 RRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
...+|. +..+++|++|+|++ +.+... ..+..+++|+.|+|+++.+.... ...+.++++|+.|+|+++....-.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCHH
Confidence 446777 77778888888875 655432 34667888888888887763211 123467788888888877542211
Q ss_pred eccCCCCccEEEEeeC
Q 015171 203 DLVNLSNLKEIILVNT 218 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c 218 (412)
.+.. ..|+.|.+.++
T Consensus 99 ~~~~-~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQG-LSLQELVLSGN 113 (347)
T ss_dssp TTCS-CCCCEEECCSS
T ss_pred Hccc-CCceEEEeeCC
Confidence 1111 23777777654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0047 Score=54.61 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCceEEEEEeCCCcc-ccCCccccCCCCeeEEEEeceeecCCCCCccCc--ccceeEeeeEEeCH------HHHHHHHcC
Q 015171 114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG 184 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~-~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~l~~~ 184 (412)
+.++.|+++...... ..+|..+..+++|+.|+|+++.+........+. +|++|+|.++.+.. .....++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 356666665532211 123333445566666666665554332222222 55555555555421 112234445
Q ss_pred CCCccEEE
Q 015171 185 CPLIEYLE 192 (412)
Q Consensus 185 ~p~Le~L~ 192 (412)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 55555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.02 Score=52.57 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=45.3
Q ss_pred ccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (412)
+..+.+|+.|+++++..+..+.. .+++|+.|+++++....+ ...+.++++|+.|+|++|.+..- ....+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-
Confidence 33446677777775334444431 456777777777662221 12356677777777777766541 112233333
Q ss_pred ccEEeccc
Q 015171 279 LEYLSMTK 286 (412)
Q Consensus 279 L~~L~l~~ 286 (412)
|+.|++.+
T Consensus 105 L~~l~l~~ 112 (347)
T 2ifg_A 105 LQELVLSG 112 (347)
T ss_dssp CCEEECCS
T ss_pred ceEEEeeC
Confidence 77777765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.0076 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCcEEEeeccccch------HHHHHhhcCCCCccEEecc
Q 015171 253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~ 285 (412)
+|++|++++|.+.. .-...++..+|+|+.|+=.
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 78888888877753 1223456678888887644
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.096 Score=49.05 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecC-cccc-eeeccCCCe
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKLI-QVEIETPNL 321 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c-~~l~-~~~~~~~~L 321 (412)
+.+|.+|+.+.+......- -...+.+|++|+.+.+.. .++.++. .+.+|+.++|... ..+. ..-..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccccee--cCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 4556777777774322111 112345677787777753 3333333 4567777777431 1111 122355677
Q ss_pred eeEEEeccee----eecccccccceEEEE
Q 015171 322 SIFKYHGDLI----SFSSNALSLSETSLC 346 (412)
Q Consensus 322 ~~l~~~~~~~----~~l~~~~~L~~l~i~ 346 (412)
+.+.+...-. ..+.++++|+++.+.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence 8777743221 677888899998884
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.032 Score=52.38 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCccccee----eccCCCeee
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV----EIETPNLSI 323 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~ 323 (412)
+..+.+|+.+.+..+...- ....+..++.++.+..............+.+|+.+.+... +..+ -..+.+|++
T Consensus 249 f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCccee--eccccccccccceeccCceeeccccccccccccccccccc--cceechhhhcCCCCCCE
Confidence 4556677777664332211 1122345666666665442211112224566777766432 2211 124456666
Q ss_pred EEEeccee----eecccccccceEEE
Q 015171 324 FKYHGDLI----SFSSNALSLSETSL 345 (412)
Q Consensus 324 l~~~~~~~----~~l~~~~~L~~l~i 345 (412)
+.+...-. ..+.++++|+++.+
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECC
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEE
Confidence 65532211 56777888888877
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=89.60 E-value=0.36 Score=40.23 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=21.8
Q ss_pred CCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccc
Q 015171 251 CGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTK 286 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~ 286 (412)
-+.|++|+|+++.+.+.....+. ..=..|+.|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 45677777777777765544433 2224577777764
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.29 Score=45.74 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeecc--ccchHHHHHhhcCCCCccEEecccccccccccc----cccccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK 301 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~ 301 (412)
+++|+.+.+...-..--...|.+|.+|+.+.+... .+.+ ..+.+|.+|+.+.|-. .++.++. .+.+|+
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 45666666643221000123567788888888532 1222 2356678888888853 3444432 556778
Q ss_pred eEEEecC
Q 015171 302 TLILECC 308 (412)
Q Consensus 302 ~L~l~~c 308 (412)
.+++.+.
T Consensus 361 ~i~~~~~ 367 (394)
T 4gt6_A 361 NIEYSGS 367 (394)
T ss_dssp EEEESSC
T ss_pred EEEECCc
Confidence 7777654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=87.38 E-value=0.094 Score=43.76 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHhC--CceEEEEEeC-CCcc---ccCCccccCCCCeeEEEEeceeecCC------CCCccCcccceeE
Q 015171 100 NASLAGRCLGLAIES--EVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA 167 (412)
Q Consensus 100 ~~~~~~~~l~~~~~~--~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 167 (412)
...+++..+...... .+++|++... .... ..+-..+..-.+|+.|+|++|.+... .....-..|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 345666777666543 5777777542 2111 11122233446677777777766433 1122335677777
Q ss_pred eeeEEeCHHHHHHHH---cCCCCccEEEeecc
Q 015171 168 LREVCADDQAIASLI---SGCPLIEYLEIRSC 196 (412)
Q Consensus 168 L~~~~~~~~~l~~l~---~~~p~Le~L~l~~c 196 (412)
|+++.+++++...+. ..-..|++|.|+++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 777777666654443 23445666666543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=81.39 E-value=9.4 Score=34.88 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=19.1
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEec
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSY 148 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~ 148 (412)
.+++++.+.. ....++.. +.+|.+|+.+.+..
T Consensus 46 ~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNS---GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECT---TEEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCC
Confidence 3677777653 22344443 34578888888865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 412 | ||||
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 1e-06 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 6e-06 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 8e-05 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 2e-04 |
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 1e-06
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
+ D IS LP+ + ++LSFL K++ Q + W+ +
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (99), Expect = 6e-06
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV 52
L+ D I++LP I I ++L F+++ + +S+ W ++ + +
Sbjct: 1 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 8e-05
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 6 VLEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47
+L+ D I+ LP I +ILS+L K + L+ K W +V
Sbjct: 5 MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS 50
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (85), Expect = 2e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 13 STLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
+LP+ +L I S L E+ + + KRW ++
Sbjct: 2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.52 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.22 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.19 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.14 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.07 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.06 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.05 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.9 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.82 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.81 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.8 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.78 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.72 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.64 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.61 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.56 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.5 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.49 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.45 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.43 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.43 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.36 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.35 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.34 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.34 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.25 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.09 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.06 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.68 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.65 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.95 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.74 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.39 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.12 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.46 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.06 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.24 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 93.65 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.2e-17 Score=144.42 Aligned_cols=172 Identities=19% Similarity=0.229 Sum_probs=107.7
Q ss_pred CCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee----ccCCCC
Q 015171 137 YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSN 209 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~----i~~l~~ 209 (412)
...+|++|++++|.+... .....+++|++|+++++.+++..+..+ ..+|+|++|++++|..+.... ..++++
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHh
Confidence 345677777777765432 335567777777777777666666653 457777777777776664322 123677
Q ss_pred ccEEEEeeCCCCceEE------EecCcccEEEeeeee----ccceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCC
Q 015171 210 LKEIILVNTSDIKRVE------IKTSNVNALAIHQTY----LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPL 278 (412)
Q Consensus 210 L~~L~i~~c~~l~~~~------~~~p~L~~L~l~~~~----~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 278 (412)
|++|++++|..+..-. ..+++|+.|.++++. +..+.....++|+|++|+++++. +++..+.. +..+++
T Consensus 123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~~~ 201 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNY 201 (284)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTT
T ss_pred ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hcccCc
Confidence 7777777775443211 134678888877653 11122233567888888887654 55544443 456788
Q ss_pred ccEEeccccccccccc----ccccccceEEEecCcc
Q 015171 279 LEYLSMTKCHKLTSVR----ISSPCLKTLILECCDK 310 (412)
Q Consensus 279 L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~ 310 (412)
|++|++++|..+++-. ..+|+|+.|++++|-.
T Consensus 202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~ 237 (284)
T d2astb2 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237 (284)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSC
T ss_pred CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCC
Confidence 8888888886654322 1457888888888733
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.2e-15 Score=133.09 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=126.5
Q ss_pred CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcce--eeccCCCCccEEEEeeCCCCceE-----EEecC
Q 015171 157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRV-----EIKTS 229 (412)
Q Consensus 157 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~-----~~~~p 229 (412)
.....+|++|+++++.++++.+..++..|++|++|.+++|..... ..+..+++|++|++++|..+... ...+|
T Consensus 42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence 345678999999999999999999999999999999999953221 13455799999999999666532 23679
Q ss_pred cccEEEeeeeec---cceEEec-cCCCCCcEEEeecc--ccchHHHHHhhcCCCCccEEecccccccccccc----cccc
Q 015171 230 NVNALAIHQTYL---FPIEVNV-SSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPC 299 (412)
Q Consensus 230 ~L~~L~l~~~~~---~~~~~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~ 299 (412)
+|++|++++|.. ......+ ..+++|+.|+++++ .+.+..+..+...+|+|++|++++|..+++-.. .+++
T Consensus 122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~ 201 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201 (284)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence 999999998752 1111222 34689999999865 467777888888899999999999877654322 5689
Q ss_pred cceEEEecCccccee----eccCCCeeeEEEec
Q 015171 300 LKTLILECCDKLIQV----EIETPNLSIFKYHG 328 (412)
Q Consensus 300 L~~L~l~~c~~l~~~----~~~~~~L~~l~~~~ 328 (412)
|++|++++|..+.+. ...+|+|+.+.+.|
T Consensus 202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 999999999876321 12345555555444
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.22 E-value=1.5e-11 Score=105.79 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=86.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+++.|++..+... .++ .+..+++|++|+++++.+........+++|+.+.++++.+++ +.. +..++.|+.+.++
T Consensus 42 ~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 42 GITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLT 115 (227)
T ss_dssp TCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECT
T ss_pred CcCEEECCCCCCC--cch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-ccccccccccccc
Confidence 6777777654332 332 356677777777777766554456677777777777665522 111 3466777777776
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEE-EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhh
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (412)
++.......+...+.++.+.+.++....... ..+++|+.|.+.++.... ...++++++|++|+++++.+.+ +.. +
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~Ls~n~l~~--l~~-l 191 (227)
T d1h6ua2 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISD--ISP-L 191 (227)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC--CGG-G
T ss_pred cccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-chhhcccccceecccCCCccCC--Chh-h
Confidence 6654433233334566666655541111111 134555555555544111 1124455555555555555443 211 3
Q ss_pred cCCCCccEEecccc
Q 015171 274 SKLPLLEYLSMTKC 287 (412)
Q Consensus 274 ~~~~~L~~L~l~~c 287 (412)
..+++|+.|++++|
T Consensus 192 ~~l~~L~~L~Ls~N 205 (227)
T d1h6ua2 192 ASLPNLIEVHLKNN 205 (227)
T ss_dssp GGCTTCCEEECTTS
T ss_pred cCCCCCCEEECcCC
Confidence 44555555555554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.19 E-value=2.9e-11 Score=103.91 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=121.1
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..+.+|++|++.+|.+........+++|++|+++++.+.+-. . +..+++|+.+.+++|....--.+..+++|+.+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l 114 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (227)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccc
Confidence 346789999999998876667789999999999998873311 1 6789999999999885533224566899999999
Q ss_pred eeCCCCceEE-EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc
Q 015171 216 VNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (412)
Q Consensus 216 ~~c~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 294 (412)
.+|....... ...+.+..+.++++.... ...+..+++|++|+++++.+.+. .. +..+++|+.|+++++ .++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~Ls~n-~l~~l~ 189 (227)
T d1h6ua2 115 TSTQITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDN-KISDIS 189 (227)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred ccccccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccc--hh-hcccccceecccCCC-ccCCCh
Confidence 8873222111 145677888877665222 23467789999999998887652 22 567899999999986 455554
Q ss_pred c--cccccceEEEecCc
Q 015171 295 I--SSPCLKTLILECCD 309 (412)
Q Consensus 295 ~--~~~~L~~L~l~~c~ 309 (412)
. .+++|++|++++|.
T Consensus 190 ~l~~l~~L~~L~Ls~N~ 206 (227)
T d1h6ua2 190 PLASLPNLIEVHLKNNQ 206 (227)
T ss_dssp GGGGCTTCCEEECTTSC
T ss_pred hhcCCCCCCEEECcCCc
Confidence 3 56899999999984
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=7.5e-12 Score=75.36 Aligned_cols=35 Identities=29% Similarity=0.479 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
++.||+|++.+||+|||.+|++++++|||+|+++-
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~ 35 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 35 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.14 E-value=4.3e-11 Score=100.57 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=18.3
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
+..+++|+.|++.++.+.+ +.. +.++++|+.|+++++
T Consensus 146 l~~~~~L~~L~l~~n~l~~--l~~-l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 146 LSGLTSLQQLNFSSNQVTD--LKP-LANLTTLERLDISSN 182 (199)
T ss_dssp GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSS
T ss_pred ccccccccccccccccccC--Ccc-ccCCCCCCEEECCCC
Confidence 3445555555555555443 111 344555555555554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=6.9e-11 Score=100.21 Aligned_cols=142 Identities=20% Similarity=0.196 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
.+++|++..+... .++ .+..+++|++|+++++.+...+....+++|+.|+++++.+++ +.. +..+++|+.|.+.
T Consensus 47 ~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 47 SIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE 120 (210)
T ss_dssp TCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred CccEEECcCCCCC--Cch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccccccccc
Confidence 4555555543221 122 244456666666666555443334455556666665555422 111 3445555555555
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhc
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS 274 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (412)
+|.....-.+.++++++.+.+ +++.... ...+..+++|+.++++++.+.+ +.. +.
T Consensus 121 ~~~~~~~~~l~~l~~l~~l~~---------------------~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~--i~~-l~ 175 (210)
T d1h6ta2 121 HNGISDINGLVHLPQLESLYL---------------------GNNKITD-ITVLSRLTKLDTLSLEDNQISD--IVP-LA 175 (210)
T ss_dssp TSCCCCCGGGGGCTTCCEEEC---------------------CSSCCCC-CGGGGGCTTCSEEECCSSCCCC--CGG-GT
T ss_pred ccccccccccccccccccccc---------------------ccccccc-cccccccccccccccccccccc--ccc-cc
Confidence 543322112222334444443 3332100 1123445566666665555543 221 34
Q ss_pred CCCCccEEecccc
Q 015171 275 KLPLLEYLSMTKC 287 (412)
Q Consensus 275 ~~~~L~~L~l~~c 287 (412)
.+++|++|+++++
T Consensus 176 ~l~~L~~L~Ls~N 188 (210)
T d1h6ta2 176 GLTKLQNLYLSKN 188 (210)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 5566666666554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.07 E-value=9.9e-11 Score=98.32 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=119.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.++++|++..+... .++ .+..+++|++|++++|.+...+....+++|+.|+++++....- .. +.+++.|+.|.+
T Consensus 40 ~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--cc-cccccccccccc
Confidence 58899888775433 232 4667899999999999887666688999999999999877321 11 578999999999
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHH
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (412)
+++.......+..+++|+.|.++++ .+..+. ..+++|+.|.+.++.... ...++++++|++|+++++.+.+ +.
T Consensus 114 ~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~~--i~- 188 (199)
T d2omxa2 114 FNNQITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVSD--IS- 188 (199)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC--CG-
T ss_pred cccccccccccchhhhhHHhhhhhh-hhcccccccccccccccccccccccC-CccccCCCCCCEEECCCCCCCC--Cc-
Confidence 9887655445667899999999987 233332 256899999999886222 1247889999999999998876 33
Q ss_pred hhcCCCCccEE
Q 015171 272 GISKLPLLEYL 282 (412)
Q Consensus 272 ~~~~~~~L~~L 282 (412)
.+..+++|++|
T Consensus 189 ~l~~L~~L~~L 199 (199)
T d2omxa2 189 VLAKLTNLESL 199 (199)
T ss_dssp GGGGCTTCSEE
T ss_pred cccCCCCCCcC
Confidence 25678888876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.06 E-value=2.2e-10 Score=106.09 Aligned_cols=117 Identities=18% Similarity=0.104 Sum_probs=58.1
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccc------------------
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK------------------ 289 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~------------------ 289 (412)
.++|++|.++++.... ...+..+++|+.|+++++.+.+ +.. +..+++|++|+++++..
T Consensus 218 ~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~ 293 (384)
T d2omza2 218 LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293 (384)
T ss_dssp CTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred cCCCCEEECCCCCCCC-cchhhcccccchhccccCccCC--CCc-ccccccCCEeeccCcccCCCCcccccccccccccc
Confidence 3556666665554111 1134455556666665555443 111 33445555555544210
Q ss_pred ---cccc--cccccccceEEEecCcccc-eeeccCCCeeeEEEeccee---eecccccccceEEEEEe
Q 015171 290 ---LTSV--RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (412)
Q Consensus 290 ---l~~l--~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~~---~~l~~~~~L~~l~i~~~ 348 (412)
+..+ ...+++++.|+++++..-. .....+|+|+.|.+.++.. ..+.++++|++|.+..+
T Consensus 294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N 361 (384)
T d2omza2 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHN 361 (384)
T ss_dssp SSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCC
Confidence 0111 1133566666666653321 1124566777777766643 34566777777777544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.05 E-value=1e-10 Score=99.13 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=98.2
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++++|+++.+... .++. +..+++|++|++++|.+...+....+++|+.|++.++.... +. -+..++.|+.+.
T Consensus 67 l~~L~~L~L~~n~i~--~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~--~~-~l~~l~~l~~l~ 140 (210)
T d1h6ta2 67 LPNVTKLFLNGNKLT--DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLY 140 (210)
T ss_dssp CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC--CG-GGGGCTTCCEEE
T ss_pred CCCCCEEeCCCcccc--Cccc-cccCccccccccccccccccccccccccccccccccccccc--cc-cccccccccccc
Confidence 468999999885433 3443 56789999999999988765667889999999999887732 12 256789999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHh
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (412)
++++..........+++|+.+.++++ .... ...+.++++|++|+++++.+.+ +..
T Consensus 141 ~~~n~l~~~~~~~~l~~L~~l~l~~n---------------------~l~~-i~~l~~l~~L~~L~Ls~N~i~~--l~~- 195 (210)
T d1h6ta2 141 LGNNKITDITVLSRLTKLDTLSLEDN---------------------QISD-IVPLAGLTKLQNLYLSKNHISD--LRA- 195 (210)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSS---------------------CCCC-CGGGTTCTTCCEEECCSSCCCB--CGG-
T ss_pred cccccccccccccccccccccccccc---------------------cccc-cccccCCCCCCEEECCCCCCCC--Chh-
Confidence 98875433222333455555555543 2111 1125677888888888887765 333
Q ss_pred hcCCCCccEEeccc
Q 015171 273 ISKLPLLEYLSMTK 286 (412)
Q Consensus 273 ~~~~~~L~~L~l~~ 286 (412)
+..+++|+.|+|++
T Consensus 196 l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 196 LAGLKNLDVLELFS 209 (210)
T ss_dssp GTTCTTCSEEEEEE
T ss_pred hcCCCCCCEEEccC
Confidence 56778888888764
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.97 E-value=2.3e-10 Score=103.19 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=114.5
Q ss_pred CceEEEEEeCCC-ccccCCccccCCCCeeEEEEece-eec--CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+|++|++..... ....+|..+.++++|++|+|+++ .+. .|.....+++|++|+|+++.+.... ...+..++.|+.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence 578888877432 33468888888999999999874 443 3356778889999999888772211 122456788888
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCCCceEEE---ecCc-ccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI---KTSN-VNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~---~~p~-L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
++++.+.....+ .+..+++|+.+.++++.-...++. ..++ ++.+.++++. .......+..+. ...+++..+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 888877544322 355577888888876622112211 1223 3555555443 111111222222 2245554443
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccccc--cccccceEEEecCcccceee---ccCCCeeeEEEec
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHG 328 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~ 328 (412)
.... +......+++++.+++.++.....++. ..++|+.|+++++.....++ ..+++|+.|.+.+
T Consensus 209 ~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence 3322 233344556666666666432222221 34566666666654332222 2334455554444
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.92 E-value=1.4e-09 Score=100.44 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=91.5
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..++++..+.++++.+........+++|++|+++++.+.+- . .+..+++|+.|++.+|.......+..+++|+.|.+
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 270 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 270 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCEeec
Confidence 34566777777766555444455566777777777665321 1 24556777777777665433334445567777777
Q ss_pred eeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 216 ~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
+++ .+..+. ...+.++.+....+.... ...+..+++++.|+++++.+.+ +.. +..+++|+.|++++|. ++.+
T Consensus 271 ~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~--l~~-l~~l~~L~~L~L~~n~-l~~l 344 (384)
T d2omza2 271 GAN-QISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFANNK-VSDV 344 (384)
T ss_dssp CSS-CCCCCGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSC-CCCC
T ss_pred cCc-ccCCCCcccccccccccccccccccc-ccccchhcccCeEECCCCCCCC--Ccc-cccCCCCCEEECCCCC-CCCC
Confidence 655 111111 134455666655544111 1234556777777777666655 222 4566777777777652 3333
Q ss_pred c--ccccccceEEEecCc
Q 015171 294 R--ISSPCLKTLILECCD 309 (412)
Q Consensus 294 ~--~~~~~L~~L~l~~c~ 309 (412)
+ ..+++|+.|++++|.
T Consensus 345 ~~l~~l~~L~~L~l~~N~ 362 (384)
T d2omza2 345 SSLANLTNINWLSAGHNQ 362 (384)
T ss_dssp GGGGGCTTCCEEECCSSC
T ss_pred hhHcCCCCCCEEECCCCc
Confidence 2 245667777776653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.9e-10 Score=99.12 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee-ec
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DL 204 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-~i 204 (412)
...+|..+. +++++|+|+++.+... ..+..+++|++|+|+++.++. +.. ...+++|+.|++++|...... .+
T Consensus 22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~ 96 (266)
T d1p9ag_ 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG 96 (266)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccc
Confidence 345555443 4677777777655322 234566677777776665521 111 235666666666666432211 22
Q ss_pred cCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCc
Q 015171 205 VNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL 279 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 279 (412)
..+++|+.|+++++.. ..+. ...++++.|.+.++....+. ..+..+++|+.++++++.+... ....+..+++|
T Consensus 97 ~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L 174 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENL 174 (266)
T ss_dssp TTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTC
T ss_pred cccccccccccccccc-ceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Ccccccccccc
Confidence 3345566666555411 1110 12334455554444311111 1123345555555555544431 11223444555
Q ss_pred cEEeccc
Q 015171 280 EYLSMTK 286 (412)
Q Consensus 280 ~~L~l~~ 286 (412)
++|+|++
T Consensus 175 ~~L~Ls~ 181 (266)
T d1p9ag_ 175 DTLLLQE 181 (266)
T ss_dssp CEEECCS
T ss_pred ceeeccc
Confidence 5555554
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.2e-09 Score=80.85 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=37.6
Q ss_pred cCCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 6 ~~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
....|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus 13 ~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~ 53 (102)
T d2ovrb1 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA 53 (102)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred hhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999753
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3.7e-10 Score=83.13 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=38.6
Q ss_pred CcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCe
Q 015171 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD 51 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~ 51 (412)
..|.|+.||+|++.+||+||+.+|++++++|||+|+++..+-+.
T Consensus 2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~ 45 (100)
T d1nexb1 2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS 45 (100)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence 36899999999999999999999999999999999976544333
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=98.80 E-value=1.2e-09 Score=98.42 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=124.3
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
.+.+++|+++.+......+|..+.++++|++|+|+++.+... .....+++|+.++++++..... +..-+..++.|+.
T Consensus 75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~ 153 (313)
T d1ogqa_ 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred Cccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccce
Confidence 358999999874333347899999999999999999876432 4567889999999998776321 1223678899999
Q ss_pred EEeeccCCccee--eccCCCCc-cEEEEeeCCCCceEEE---ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNL-KEIILVNTSDIKRVEI---KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L-~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
++++++.....+ .+..+..+ +.+.+..+ .+..... .......+++..+. .......+..+++++.+++.++.
T Consensus 154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred eeccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988654332 23334444 66665543 2211111 11233345544443 22233445667888888888777
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCc
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
+... +. .+..+++|+.|+++++.....++. ..++|++|+++++.
T Consensus 233 l~~~-~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~ 279 (313)
T d1ogqa_ 233 LAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ECCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cccc-cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence 6543 22 355678888888888654434443 45778888888764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=4.4e-10 Score=98.77 Aligned_cols=166 Identities=17% Similarity=0.145 Sum_probs=121.0
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
++++.|+++.... ..+|. .+.++++|++|+|+++.+...+....+++|++|+|+++.+.. ....+...++|+.|+
T Consensus 31 ~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~ 106 (266)
T d1p9ag_ 31 KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (266)
T ss_dssp TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred cCCCEEECcCCcC--CCcCHHHhhccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence 4799998886432 35554 456789999999999977655556789999999999988732 122467789999999
Q ss_pred eeccCCcc--eeeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccc
Q 015171 193 IRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 193 l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 265 (412)
++++.... ......+++++.|.+.++ .+..+. ...++|+.++++++....+. ..+..+++|++|+++++.+.
T Consensus 107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~ 185 (266)
T d1p9ag_ 107 VSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (266)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccccceeecccccccccccccccccc-ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence 99886543 222344688999999876 333332 24678999999988732222 23678999999999999987
Q ss_pred hHHHHHhhcCCCCccEEeccc
Q 015171 266 DEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~ 286 (412)
. ++..+..+++|+.|+|++
T Consensus 186 ~--lp~~~~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 186 T--IPKGFFGSHLLPFAFLHG 204 (266)
T ss_dssp C--CCTTTTTTCCCSEEECCS
T ss_pred c--cChhHCCCCCCCEEEecC
Confidence 5 444455678999999987
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.78 E-value=3.7e-09 Score=94.62 Aligned_cols=185 Identities=17% Similarity=0.162 Sum_probs=93.4
Q ss_pred CceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
+++.|+++.+ ....+|. .+.++++|++|+++++.+... ..+..+++|+.|++.++.+.. +. ....+.++.|
T Consensus 32 ~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~--~~~~~~l~~L 105 (305)
T d1xkua_ 32 DTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQEL 105 (305)
T ss_dssp TCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCEE
T ss_pred CCCEEECcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cc--cchhhhhhhh
Confidence 5666666653 2335554 345566777777776655332 335566677777766654421 00 1123344555
Q ss_pred EeeccCCc------------------------ce----eeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeecc
Q 015171 192 EIRSCEGL------------------------ES----LDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLF 242 (412)
Q Consensus 192 ~l~~c~~~------------------------~~----~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~ 242 (412)
.+.++... .. ..+..+++|+.+.+.++ .+..+.. ..++|++|++.++...
T Consensus 106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKIT 184 (305)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCC
T ss_pred hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcccCCccCEEECCCCcCC
Confidence 44433211 00 01222456666666655 1222211 2456677766665411
Q ss_pred c-eEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecC
Q 015171 243 P-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECC 308 (412)
Q Consensus 243 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c 308 (412)
. ....+..++.++.|+++++.+.... ...+..+++|++|+++++ .++.++. ..++|++|+++++
T Consensus 185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N 252 (305)
T d1xkua_ 185 KVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 252 (305)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred CCChhHhhccccccccccccccccccc-cccccccccceeeecccc-cccccccccccccCCCEEECCCC
Confidence 1 1223456666777777666655421 233455667777777765 3333332 3456677776665
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.72 E-value=7.4e-09 Score=92.61 Aligned_cols=194 Identities=17% Similarity=0.172 Sum_probs=105.7
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeec
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDL 204 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i 204 (412)
....+|..+. +++++|+|+++.+..- ..+..+++|++|+++++.+..-. ...+.+++.|+.|+++++.. ..+..
T Consensus 21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~l-~~l~~ 96 (305)
T d1xkua_ 21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPE 96 (305)
T ss_dssp CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCS
T ss_pred CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc-hhhhhCCCccCEecccCCcc-CcCcc
Confidence 3456777654 6899999999977544 35678999999999998873211 12356899999999998853 22222
Q ss_pred cCCCCccEEEEeeCCCCceEE------------------------------EecCcccEEEeeeeeccceEEeccCCCCC
Q 015171 205 VNLSNLKEIILVNTSDIKRVE------------------------------IKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~~~------------------------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 254 (412)
...+.++.|...++ .+..+. ...++|+.+.+.++....+ ....+++|
T Consensus 97 ~~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~L 173 (305)
T d1xkua_ 97 KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--PQGLPPSL 173 (305)
T ss_dssp SCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--CSSCCTTC
T ss_pred chhhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc--CcccCCcc
Confidence 22356666665543 111110 0123444445444431111 11224556
Q ss_pred cEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccceee---ccCCCeeeEEEe
Q 015171 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYH 327 (412)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~ 327 (412)
++|+++++...... ...+..++.++.|+++++. ++.+. ...++|+.|++++|. +..++ ..+++|+.|.+.
T Consensus 174 ~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls 250 (305)
T d1xkua_ 174 TELHLDGNKITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLH 250 (305)
T ss_dssp SEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECC
T ss_pred CEEECCCCcCCCCC-hhHhhcccccccccccccc-ccccccccccccccceeeeccccc-ccccccccccccCCCEEECC
Confidence 66666555443321 2234455666666666542 22221 234566666666663 22222 234566666665
Q ss_pred cce
Q 015171 328 GDL 330 (412)
Q Consensus 328 ~~~ 330 (412)
+..
T Consensus 251 ~N~ 253 (305)
T d1xkua_ 251 NNN 253 (305)
T ss_dssp SSC
T ss_pred CCc
Confidence 543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.8e-09 Score=92.91 Aligned_cols=177 Identities=16% Similarity=0.113 Sum_probs=98.6
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee---
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--- 202 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--- 202 (412)
...+|..+. +++++|+|+++.+... ..+..+++|+.|+++++.+..... .....++.++.+.+........+
T Consensus 23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~ 99 (284)
T d1ozna_ 23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA 99 (284)
T ss_dssp CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccch
Confidence 345555443 5678888888766432 346678888888888776632111 22455677777776655554433
Q ss_pred eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCC
Q 015171 203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
.+..+++|+.|.+.++. +..+. ...++|+.+.+.++.-..+ ...+..+++|++|+++++.+..- ....+.+++
T Consensus 100 ~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~ 177 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLH 177 (284)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred hhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-chhhhcccc
Confidence 23446777777777662 11111 1345667777666552221 12345566777777776665431 123345567
Q ss_pred CccEEecccccccccccc---cccccceEEEecCc
Q 015171 278 LLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
+|+.+.+.++....-.+. .+++|+.|+++++.
T Consensus 178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 212 (284)
T d1ozna_ 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (284)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence 777777766432222121 33566666666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.64 E-value=8.9e-08 Score=86.72 Aligned_cols=92 Identities=28% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCC-CCccEEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC-PLIEYLE 192 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~-p~Le~L~ 192 (412)
.++++|+++... ...+|.. .++|++|+++++.+...+ ..+.+|+.|++.++.++. +... +.|++|+
T Consensus 38 ~~l~~LdLs~~~--L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~------l~~lp~~L~~L~ 104 (353)
T d1jl5a_ 38 RQAHELELNNLG--LSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPLLEYLG 104 (353)
T ss_dssp HTCSEEECTTSC--CSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTTCCEEE
T ss_pred cCCCEEEeCCCC--CCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch------hhhhcccccccc
Confidence 467777766532 2355643 356777777776665322 234577777777665521 1122 3577777
Q ss_pred eeccCCcceeeccCCCCccEEEEeeC
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
++++....--....+++|+.|++.++
T Consensus 105 L~~n~l~~lp~~~~l~~L~~L~l~~~ 130 (353)
T d1jl5a_ 105 VSNNQLEKLPELQNSSFLKIIDVDNN 130 (353)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccccccccccchhhhccceeeccccc
Confidence 77664322112333566666666655
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.2e-09 Score=83.81 Aligned_cols=123 Identities=13% Similarity=0.062 Sum_probs=59.3
Q ss_pred CCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
++.+|++|+|+++.+... .....+++|+.|+|+++.+.. +.. +..+|+|++|++++|..
T Consensus 16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i----------------- 75 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI----------------- 75 (162)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-----------------
T ss_pred CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-----------------
Confidence 455666666666655433 222345555555555554421 000 23344444444444432
Q ss_pred eeCCCCceEE----EecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeeccccchHH--HHHhhcCCCCccEEecc
Q 015171 216 VNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMT 285 (412)
Q Consensus 216 ~~c~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~ 285 (412)
..+. ..+|+|+.|+++++.... ....+..+++|++|+++++.+.... -...+..+|+|+.|+-.
T Consensus 76 ------~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 76 ------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp ------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ------cCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 2221 124455555555544111 1123456777777777777664411 12245567777777644
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.2e-08 Score=90.34 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=123.6
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le 189 (412)
.++++|+++.... ..+|. .+.++++|++|+++++.+... .....++.++.+....... ..- -...+.++++|+
T Consensus 32 ~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~ 108 (284)
T d1ozna_ 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH 108 (284)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence 4788888876433 35665 466789999999998765432 4445567777776643322 111 122356789999
Q ss_pred EEEeeccCCcc--eeeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccce-EEeccCCCCCcEEEeecc
Q 015171 190 YLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL 262 (412)
Q Consensus 190 ~L~l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 262 (412)
+|+++++.... ......+++|+.+.+.++ .+..+. ...++|+.|+++++....+ ...+.++++|+.++++++
T Consensus 109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N 187 (284)
T d1ozna_ 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (284)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEecCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence 99999886432 112333578899988876 333332 1457899999988772221 234577899999999988
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCc
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCD 309 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~ 309 (412)
.+... .+..+..+++|+.|+++++......+ ...++|++|++++.+
T Consensus 188 ~l~~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 188 RVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccc-ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 87752 24456778999999999854322211 245678888777643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.2e-07 Score=81.29 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=90.1
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee---c
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---L 204 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i 204 (412)
.+|..+. +++++|+++++.+... ..+.++++|++|+++++.+....-...+.+++.++++.+..+..+.... +
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~ 99 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 99 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence 5555443 4677777777665322 2356677778887777654211111123457777777776665554332 3
Q ss_pred cCCCCccEEEEeeCCCCceEEE--ecCcccEEEeeeeec---cce-EEeccCC-CCCcEEEeeccccchHHHHHhhcCCC
Q 015171 205 VNLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYL---FPI-EVNVSSC-GNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~~~~--~~p~L~~L~l~~~~~---~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
.++++|+.+.+.++ .+..... ..++++.+....... ..+ ...+..+ ..++.|+++++.+.. +.......+
T Consensus 100 ~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i~~~~~~~~ 176 (242)
T d1xwdc1 100 QNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNCAFNGT 176 (242)
T ss_dssp ECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTTTTTC
T ss_pred cccccccccccchh-hhcccccccccccccccccccccccccccccccccccccccceeeecccccccc--cccccccch
Confidence 44677777777766 2222111 223334433322210 000 0112223 367777777766654 222223345
Q ss_pred CccEEecccccccccccc----cccccceEEEecCc
Q 015171 278 LLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~ 309 (412)
+++.+....+..++.++. .+++|+.|+|+++.
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~ 212 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 212 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence 565655444445555533 45677888887764
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.49 E-value=1.6e-09 Score=90.49 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=87.3
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
..+.+++....+....+|..+..+++|++|+|+++.+...+....+++|+.|+++++.++. +..+...++.|++|+++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECS
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccc
Confidence 3555555553334445666677788899999998887765667788889999998888732 11122234567788777
Q ss_pred ccCCccee-eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccce--EEeccCCCCCcEEEeeccccchHH---
Q 015171 195 SCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEW--- 268 (412)
Q Consensus 195 ~c~~~~~~-~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--- 268 (412)
+|.. ..+ .+. .+++|+.|+++++....+ ...+..+++|+.|+++++.+....
T Consensus 102 ~N~i-~~l~~~~---------------------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 159 (198)
T d1m9la_ 102 YNQI-ASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp EEEC-CCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred cccc-ccccccc---------------------ccccccccccccchhccccccccccCCCccceeecCCCccccCcccc
Confidence 6632 111 111 234555555555541111 123567788888888777654321
Q ss_pred ------HHHhhcCCCCccEEecc
Q 015171 269 ------LCNGISKLPLLEYLSMT 285 (412)
Q Consensus 269 ------~~~~~~~~~~L~~L~l~ 285 (412)
...++..+|+|+.|+-.
T Consensus 160 ~~~~~~r~~vi~~lp~L~~LD~~ 182 (198)
T d1m9la_ 160 NATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp TTHHHHHHHHHHHCSSCCEESSG
T ss_pred cchhhHHHHHHHHCCCcCEeCCc
Confidence 11235567888877643
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.7e-08 Score=76.43 Aligned_cols=38 Identities=37% Similarity=0.604 Sum_probs=35.2
Q ss_pred CcccCCCCC----HHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 8 ~~D~is~LP----devl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
..|.|+.|| |||+.+||+||+.+|++++++|||+|+.+
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l 48 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 468999999 59999999999999999999999999864
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.43 E-value=6.6e-07 Score=80.76 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=41.2
Q ss_pred CCCCccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEecceeeecc-cccccceEEE
Q 015171 275 KLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSS-NALSLSETSL 345 (412)
Q Consensus 275 ~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~~~l~-~~~~L~~l~i 345 (412)
.+++|++|++++| .+..++..+++|+.|++++|. +..++...++|+.|.+.++....+. -..+|++|.+
T Consensus 282 ~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~L~~lp~~~~~L~~L~~ 351 (353)
T d1jl5a_ 282 LPPSLEELNVSNN-KLIELPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351 (353)
T ss_dssp CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred cCCCCCEEECCCC-ccCccccccCCCCEEECCCCc-CCccccccCCCCEEECcCCcCCCCCccccccCeeEC
Confidence 3567788888776 345566666778888777663 4455545567777777665431111 1235666655
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.43 E-value=9.9e-09 Score=93.45 Aligned_cols=208 Identities=20% Similarity=0.175 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHh-CCceEEEEEeCCCc---cccCCccccCCCCeeEEEEeceeecCC------------CCCccCcccce
Q 015171 102 SLAGRCLGLAIE-SEVKELVLVHWRSE---RRNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLRK 165 (412)
Q Consensus 102 ~~~~~~l~~~~~-~~l~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~~ 165 (412)
.....++..... ..+++|+++..... ...+-..+...++|+.|+++++..... .....+++|+.
T Consensus 18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~ 97 (344)
T d2ca6a1 18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97 (344)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence 344444443333 36777777653211 112223345567777777776543211 11234677888
Q ss_pred eEeeeEEeCHH---HHHHHHcCCCCccEEEeeccCCcce--------e-------eccCCCCccEEEEeeCC----CCce
Q 015171 166 LALREVCADDQ---AIASLISGCPLIEYLEIRSCEGLES--------L-------DLVNLSNLKEIILVNTS----DIKR 223 (412)
Q Consensus 166 L~L~~~~~~~~---~l~~l~~~~p~Le~L~l~~c~~~~~--------~-------~i~~l~~L~~L~i~~c~----~l~~ 223 (412)
|+|+++.+++. .+...+..++.|++|.+++|..... + .....+.|+.+.+.++. +...
T Consensus 98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~ 177 (344)
T d2ca6a1 98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 177 (344)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence 88877776443 3444455677888888877743110 0 01123567777665541 0111
Q ss_pred EE---EecCcccEEEeeeeeccc------eEEeccCCCCCcEEEeeccccchHH---HHHhhcCCCCccEEecccccccc
Q 015171 224 VE---IKTSNVNALAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT 291 (412)
Q Consensus 224 ~~---~~~p~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~ 291 (412)
+. ...++|+.|+++++.... ....+..+++|+.|+++++.+.... +...+..+++|++|++++|.--.
T Consensus 178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~ 257 (344)
T d2ca6a1 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 257 (344)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence 10 134566777766654111 1112455677777777777665533 33345566777777777763211
Q ss_pred ----cccc-----cccccceEEEecCc
Q 015171 292 ----SVRI-----SSPCLKTLILECCD 309 (412)
Q Consensus 292 ----~l~~-----~~~~L~~L~l~~c~ 309 (412)
.+.. ..+.|++|+++++.
T Consensus 258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~ 284 (344)
T d2ca6a1 258 RGAAAVVDAFSKLENIGLQTLRLQYNE 284 (344)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhhHHHHHHhhhccCCCCCEEECCCCc
Confidence 1111 23456777776654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.2e-07 Score=78.59 Aligned_cols=188 Identities=15% Similarity=0.101 Sum_probs=112.1
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++.... ..+|.. +.++++|++|+++++.+... ..+..+++++++.+..+..-.......+..+++|+
T Consensus 29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~ 106 (242)
T d1xwdc1 29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 106 (242)
T ss_dssp SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred CCCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence 4899999987443 356664 46789999999999865332 44567889999987654221111123357899999
Q ss_pred EEEeeccCCcceeeccCCCCccEEEEeeC--CCCceEEEe-----cCcccEEEeeeeeccceEEeccCCCCCcEEEe-ec
Q 015171 190 YLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKF-DF 261 (412)
Q Consensus 190 ~L~l~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l-~~ 261 (412)
+|.+.++..........+.+++.+..... ..+..+... .+.++.+.+.++....+.......++++.+.. .+
T Consensus 107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~ 186 (242)
T d1xwdc1 107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186 (242)
T ss_dssp EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTC
T ss_pred ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccc
Confidence 99999885433222223455666655433 334444321 23677777776652222222334456655544 55
Q ss_pred cccchHHHHHhhcCCCCccEEecccccccccccc-cccccceEEE
Q 015171 262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLIL 305 (412)
Q Consensus 262 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l 305 (412)
+.+.. .....+.++++|+.|+++++. ++.++. .+.++..|..
T Consensus 187 n~l~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~ 229 (242)
T d1xwdc1 187 NNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRA 229 (242)
T ss_dssp TTCCC-CCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEES
T ss_pred ccccc-ccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCccccc
Confidence 55543 112346778999999998853 455543 3455555543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=4.8e-08 Score=91.82 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=72.1
Q ss_pred CceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCcc---ccCCccccCCCCeeEEEEeceeecCC------
Q 015171 84 SIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------ 154 (412)
Q Consensus 84 ~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------ 154 (412)
.++.+.++... .....+..++ ...++++.|++..+.... ..+...+..+++|++|+|+++.+...
T Consensus 3 ~l~~ld~~~~~----i~~~~~~~l~--~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~ 76 (460)
T d1z7xw1 3 DIQSLDIQCEE----LSDARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76 (460)
T ss_dssp EEEEEEEESCC----CCHHHHHHHH--HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCEEEeeCCc----CChHHHHHHH--HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence 45667666432 2333344444 234799999999875432 23344456789999999999876421
Q ss_pred -CCCccCcccceeEeeeEEeCHHHH---HHHHcCCCCccEEEeeccC
Q 015171 155 -SENVKLFSLRKLALREVCADDQAI---ASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 155 -~~~~~l~~L~~L~L~~~~~~~~~l---~~l~~~~p~Le~L~l~~c~ 197 (412)
.......+|++|+|++|.+++.+. ...+..+++|++|++++|.
T Consensus 77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 111234579999999998866554 4456789999999998874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.34 E-value=4e-08 Score=89.29 Aligned_cols=173 Identities=15% Similarity=0.077 Sum_probs=98.9
Q ss_pred cCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEeCHHHHHHH------------HcCCCCccEEEeeccC
Q 015171 136 FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASL------------ISGCPLIEYLEIRSCE 197 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l~~l------------~~~~p~Le~L~l~~c~ 197 (412)
..+++|++|+|++|.+... .....+++|+.|+++++.+++.....+ ....+.|+.+.++++.
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence 4566777777777665432 122345677777777766633322111 2356677777776654
Q ss_pred Ccce----e--eccCCCCccEEEEeeCCCC----c----eEEEecCcccEEEeeeeeccc-----eEEeccCCCCCcEEE
Q 015171 198 GLES----L--DLVNLSNLKEIILVNTSDI----K----RVEIKTSNVNALAIHQTYLFP-----IEVNVSSCGNLKCLK 258 (412)
Q Consensus 198 ~~~~----~--~i~~l~~L~~L~i~~c~~l----~----~~~~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~ 258 (412)
.... + .+..+++|+.|++..|.-- . ......++|+.|+++++.... +...+..+++|++|+
T Consensus 170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~ 249 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence 2211 1 1223467777777766210 0 011145778888887765111 122356788999999
Q ss_pred eeccccchHHHHHhh---c--CCCCccEEeccccccccc-----cc----ccccccceEEEecCc
Q 015171 259 FDFLPIEDEWLCNGI---S--KLPLLEYLSMTKCHKLTS-----VR----ISSPCLKTLILECCD 309 (412)
Q Consensus 259 l~~~~~~~~~~~~~~---~--~~~~L~~L~l~~c~~l~~-----l~----~~~~~L~~L~l~~c~ 309 (412)
+++|.+.+.....+. . ..+.|++|+++++. ++. +. ...++|++|+|+++.
T Consensus 250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 999988876544433 2 23679999998863 221 11 134667777776644
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=7.9e-08 Score=73.39 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=57.4
Q ss_pred EEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCc
Q 015171 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIK 222 (412)
Q Consensus 143 ~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~ 222 (412)
.|+|+++.+...+....+++|++|+++++.++. +..-+..+++|+.|+++++....--.+..+++|+.|+++
T Consensus 2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~------ 73 (124)
T d1dcea3 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC------ 73 (124)
T ss_dssp EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC------
T ss_pred EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECC------
Confidence 456666665544555666667777776666521 111244566666666666533211122233334433333
Q ss_pred eEEEecCcccEEEeeeeecc--ceEEeccCCCCCcEEEeeccccchH--HHHHhhcCCCCccEE
Q 015171 223 RVEIKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYL 282 (412)
Q Consensus 223 ~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L 282 (412)
++... +....+..+++|+.|+++++.+... ....+...+|+|+.|
T Consensus 74 ---------------~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 74 ---------------NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp ---------------SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred ---------------CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 33211 1012345567777777776665431 112233445666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=4.3e-07 Score=72.71 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=32.2
Q ss_pred cCcccEEEeeeeeccceEEe-ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 228 TSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
+++|++|+++++....+... +..+++|++|+++++.+.+-.-...+..+++|++|++.++
T Consensus 62 l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N 122 (162)
T d1a9na_ 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122 (162)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCC
Confidence 45666666666652222211 3456677777776666654211122455666666666665
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.22 E-value=2.5e-08 Score=83.05 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=63.2
Q ss_pred CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEe
Q 015171 157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236 (412)
Q Consensus 157 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l 236 (412)
...+++|++|+|+++.+++ +.. +..+++|+.|++++|.. ..+..+....++|+.|++
T Consensus 44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i--------------------~~i~~~~~~~~~L~~L~l 100 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI--------------------KKIENLDAVADTLEELWI 100 (198)
T ss_dssp HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE--------------------CSCSSHHHHHHHCCEEEC
T ss_pred HhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc--------------------cccccccccccccccccc
Confidence 3445666666666666521 111 23445566666555521 111111112456777777
Q ss_pred eeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
+++....+ ..+..+++|+.|+++++.+.+-.....+..+++|+.|++++++
T Consensus 101 ~~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 101 SYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence 77762221 2356788999999999888763222346788999999998853
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.09 E-value=1.2e-06 Score=66.58 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=31.1
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
+++|+.|+++++....+ ..+..+++|++|+++++.+........+..+++|+.|++++
T Consensus 42 l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~ 99 (124)
T d1dcea3 42 LRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99 (124)
T ss_dssp CTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred hhccccccccccccccc-CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence 34455555554442221 13556677777777776665421112345567777777766
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.8e-07 Score=84.75 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=76.1
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEeCHHHHHHHHc----C
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASLIS----G 184 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l~~l~~----~ 184 (412)
++++|+++........+...+..+++++.|+|.+|.+... .....+++|+.|+|+++.+++.++..+.. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 6889999876555555555556678999999999976532 22367899999999999887777666554 3
Q ss_pred CCCccEEEeeccCCcce----e--eccCCCCccEEEEeeC
Q 015171 185 CPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~~----~--~i~~l~~L~~L~i~~c 218 (412)
.+.|++|++++|..-.. + .+..+++|++|+++++
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence 46899999999963211 1 2345689999999876
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.68 E-value=1.3e-05 Score=65.63 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=69.6
Q ss_pred ccccCCccccCCCCeeEEEEeceeecC-C--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee-
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQ-P--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~-~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~- 202 (412)
....+|..+. +++++|+|+++.+.. . ..+..+++|+.|+|+++.+.... ...+...+.|++|+++++... .+
T Consensus 19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l~-~l~ 94 (192)
T d1w8aa_ 19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIK-EIS 94 (192)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCC-EEC
T ss_pred CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeecccccc-ccC
Confidence 3446666553 678899999887742 2 44567888888888887763211 123456788888888877432 22
Q ss_pred --eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccc
Q 015171 203 --DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 203 --~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
.+.++++|+.|+++++ .+..+. ...+..+++|++|+++++.+.
T Consensus 95 ~~~F~~l~~L~~L~L~~N-~l~~i~-------------------~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 95 NKMFLGLHQLKTLNLYDN-QISCVM-------------------PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSSSTTCTTCCEEECCSS-CCCEEC-------------------TTSSTTCTTCCEEECTTCCBC
T ss_pred HHHHhCCCcccccccCCc-cccccC-------------------HHHhcCCcccccccccccccc
Confidence 2334555655555544 222221 113456778888888776654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.65 E-value=1e-05 Score=66.31 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=70.1
Q ss_pred EEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCC
Q 015171 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (412)
Q Consensus 143 ~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~ 220 (412)
.++.++..+...|.. -.+++++|+|+++.++.......+...++|++|+++++...... .+..
T Consensus 12 ~v~Cs~~~L~~iP~~-lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-------------- 76 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-------------- 76 (192)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT--------------
T ss_pred EEEEeCCCcCccCCC-CCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc--------------
Confidence 445555444432221 12577778887776632111222445667777777666432211 1122
Q ss_pred CceEEEecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 221 IKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 221 l~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
.++|++|+++++....+ ...|.++++|++|+|+++.+..- ....+..+++|++|++++.
T Consensus 77 -------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i-~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 77 -------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp -------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred -------ccccceeeeccccccccCHHHHhCCCcccccccCCcccccc-CHHHhcCCccccccccccc
Confidence 34455555555542111 22467899999999999988762 2344667899999999874
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.95 E-value=0.00018 Score=57.11 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCCccEEEeeccCC
Q 015171 176 QAIASLISGCPLIEYLEIRSCEG 198 (412)
Q Consensus 176 ~~l~~l~~~~p~Le~L~l~~c~~ 198 (412)
+.+..+..+.|.|++|+|+++..
T Consensus 5 ~~l~~l~~n~~~L~~L~L~~~~~ 27 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNINNMKR 27 (167)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCS
T ss_pred HHHHHHHhCCCCCcEEEeCCCCC
Confidence 44566666677777777765543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.00058 Score=53.36 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.4
Q ss_pred CCCccEEEeecc
Q 015171 185 CPLIEYLEIRSC 196 (412)
Q Consensus 185 ~p~Le~L~l~~c 196 (412)
.++|++|.+.++
T Consensus 30 l~~l~~L~l~~n 41 (156)
T d2ifga3 30 AENLTELYIENQ 41 (156)
T ss_dssp CSCCSEEECCSC
T ss_pred ccccCeeecCCC
Confidence 344444444433
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.0022 Score=49.87 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=28.3
Q ss_pred CeeEEEEeceeecC-CCCCccCcccceeEeeeEE-eCHHHHHHHHcCCCCccEEEeecc
Q 015171 140 SLHVLELSYCKLQQ-PSENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSC 196 (412)
Q Consensus 140 ~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~c 196 (412)
..+.++.++..... +.....+++|++|++.++. ++.-.. ..+.+.++|+.|+++++
T Consensus 9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N 66 (156)
T d2ifga3 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS 66 (156)
T ss_dssp SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS
T ss_pred CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCc-hhhccccccCcceeecc
Confidence 33445555543322 2345566777888776543 211111 11345666666666665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.12 E-value=0.00079 Score=53.13 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=18.7
Q ss_pred ccCCCCCcEEEee--ccccchHH---HHHhhcCCCCccEEeccc
Q 015171 248 VSSCGNLKCLKFD--FLPIEDEW---LCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 248 ~~~~~~L~~L~l~--~~~~~~~~---~~~~~~~~~~L~~L~l~~ 286 (412)
+...++|+.++|. .+.+.++. +...+...++|++|++..
T Consensus 98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 3445556654443 33444422 223334556666666654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.46 E-value=0.0018 Score=51.09 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=6.5
Q ss_pred cCCCCccEEEeecc
Q 015171 183 SGCPLIEYLEIRSC 196 (412)
Q Consensus 183 ~~~p~Le~L~l~~c 196 (412)
..++.|++|++++|
T Consensus 69 ~~n~~L~~L~L~~n 82 (167)
T d1pgva_ 69 ETSPSLRVLNVESN 82 (167)
T ss_dssp HHCSSCCEEECCSS
T ss_pred hhcccccceeeehh
Confidence 33444444444444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.001 Score=52.21 Aligned_cols=59 Identities=20% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCCeeEEEEeceeecCCC----CCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCC
Q 015171 138 VESLHVLELSYCKLQQPS----ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEG 198 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~ 198 (412)
+++|++|+|+++.+.... ....+++|+.|+|+++.+ +-..+.. + ..+.|++|.+++++.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl 127 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL 127 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence 556677777776654321 234567777777777777 3334432 2 234577777777654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.24 E-value=0.014 Score=45.53 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=9.9
Q ss_pred ecccccccceEEEEEe
Q 015171 333 FSSNALSLSETSLCFS 348 (412)
Q Consensus 333 ~l~~~~~L~~l~i~~~ 348 (412)
.++..++|++|.+++.
T Consensus 127 ~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 127 MLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHCSSCCEEECCCS
T ss_pred HHHhCCCcCEEeCcCC
Confidence 3445667777777544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.0039 Score=48.70 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=9.5
Q ss_pred cCCCCCcEEEeeccccch
Q 015171 249 SSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~ 266 (412)
..+++|+.|+++++.+.+
T Consensus 88 ~~l~~L~~L~Ls~N~i~~ 105 (162)
T d1koha1 88 QKAPNLKILNLSGNELKS 105 (162)
T ss_dssp HHSTTCCCCCCTTSCCCC
T ss_pred hhCCcccccccccCcccc
Confidence 345555555555555543
|