Citrus Sinensis ID: 015172

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Secondary Structure (PSIPRED)
cccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccEEEEcccccccccEEEccccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHEEcccccccccccccccccccccEEEcccccccccccccccccEEccccHHHcccccHHHcHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccc
Coil and Loop (DISEMBL)
maatsattfsitstiafgpkagqlpqskpsgvrfnskkslvsfsglKAVTSVICEsntsflnkeSCSALRSTFARKaqsseqrpqyalqpqasFKVAVLGaaggigqpLALLIKMSPLVSALHLYDVMNVKGVAadlshcntpsqvldftgpEELASALKGVNvvvipagvprkpgmtrddlfNINANIVKTLVEAVAdncpdafihiisnpvnstvPIAAEVLkqkgvydpkklfgvTTLDVVRANTFVAQKknlklidvdvpvvgghagitilpllsktmpsvsftdeevGDLTVRIQNAGTEVVeakagagsaTLSMAYAAARFVESSLRaldgdgdvyECVFVEsnltelpffASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Flexible Loop (DISEMBL)
maatsattfsitstiafgpkagqlpqskpsgvrFNSKKSLVSFSGLKAVTSVICESntsflnkeSCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGvprkpgmtrdDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFvaqkknlklidvdvpvvGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Low Complexity Region (SEG)
MaatsattfsitstiafGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Disordered region (IsUnstruct)
***************************************LVSFSGLKAVTSVICESNTSFLN*****************************ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLT********************************
Disordered Region (DISOPRED)
**************************************SLVSFSGL*************************************************VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAF*QKQ****
Disordered Region (DISEMBL)
********FSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKE***********************LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Disordered Region (DISPRO)
*****************************SGVR*NSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q9SN86	403	Malate dehydrogenase, chl	yes	no	0.941	0.962	0.77	1e-169
Q42972	356	Malate dehydrogenase, gly	no	no	0.757	0.876	0.662	1e-117
P19446	356	Malate dehydrogenase, gly	N/A	no	0.75	0.867	0.668	1e-116
P46488	356	Malate dehydrogenase, gly	N/A	no	0.757	0.876	0.662	1e-115
P83373	339	Malate dehydrogenase, mit	N/A	no	0.813	0.988	0.610	1e-115
P17783	347	Malate dehydrogenase, mit	N/A	no	0.774	0.919	0.641	1e-114
P37228	353	Malate dehydrogenase, gly	no	no	0.762	0.889	0.651	1e-114
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.817	0.988	0.599	1e-114
O82399	354	Probable malate dehydroge	no	no	0.757	0.881	0.652	1e-114
Q9LKA3	341	Malate dehydrogenase 2, m	no	no	0.817	0.988	0.593	1e-112

>sp|Q9SN86|MDHP_ARATH Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1

 Score =  595 bits (1535), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 308/400 (77%), Positives = 345/400 (86%), Gaps = 12/400 (3%)

Query: 3   ATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLN 62
           ATSA+ FS  S+     KA  +P S+   V+FNS   + SF+GLK+ + +    ++S   
Sbjct: 4   ATSASLFSTVSSSYS--KASSIPHSRLQSVKFNS---VPSFTGLKSTSLISGSDSSSL-- 56

Query: 63  KESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSAL 122
                 LR +   KAQ+S+++P Y  +  AS+KVAVLGAAGGIGQPL+LLIKMSPLVS L
Sbjct: 57  ---AKTLRGSVT-KAQTSDKKP-YGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTL 111

Query: 123 HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDL 182
           HLYD+ NVKGVAADLSHCNTPSQV DFTGP ELA  LK VNVVVIPAGVPRKPGMTRDDL
Sbjct: 112 HLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDL 171

Query: 183 FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLD 242
           FNINANIVKTLVEAVA+NCP+AFIHIISNPVNSTVPIAAEVLK+KGVYDPKKLFGVTTLD
Sbjct: 172 FNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLD 231

Query: 243 VVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNA 302
           VVRANTFV+QKKNLKLIDVDVPV+GGHAGITILPLLSKT PSV+FTDEE+ +LTVRIQNA
Sbjct: 232 VVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNA 291

Query: 303 GTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVK 362
           GTEVV+AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYEC FVES LT+LPFFASRVK
Sbjct: 292 GTEVVDAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVK 351

Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGV 402
           +G+NG+E++I SDLQGLTEYEQKALEALK ELKASI+KGV
Sbjct: 352 IGKNGLEAVIESDLQGLTEYEQKALEALKVELKASIDKGV 391

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/314 (66%), Positives = 249/314 (79%), Gaps = 2/314 (0%)

Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           FKVA+LGA+GGIGQPLALL+KM+PLVS LHLYDV+N  GV AD+SH NT + V  F G  
Sbjct: 45  FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQP 104

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           +L +AL G+++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A  CP+A +++ISNPV
Sbjct: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPV 164

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
           NSTVPIAAEV K+ G YDPK+L GVTTLDVVRANTFVA+   L   DV+VPV+GGHAG+T
Sbjct: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVT 224

Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
           ILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA++F ++ LR
Sbjct: 225 ILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLR 284

Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
            L GD  + EC FV S +TELPFFAS+V+LGR G+E ++S  L  L E+E+  LE  K E
Sbjct: 285 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS--LGPLNEFERAGLEKAKKE 342

Query: 394 LKASIEKGVAFAQK 407
           L  SI+KGVAF  K
Sbjct: 343 LAESIQKGVAFINK 356

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/311 (66%), Positives = 245/311 (78%), Gaps = 2/311 (0%)

Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G +
Sbjct: 45  FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQ 104

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           +L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A  CP A +++ISNPV
Sbjct: 105 QLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 164

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
           NSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   L   DVDVPVVGGHAG+T
Sbjct: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 224

Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
           ILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ LR
Sbjct: 225 ILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 284

Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
            L GD  V EC FV S +TELPFFAS+V+LGRNG+E + S  L  L EYE+  LE  K E
Sbjct: 285 GLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKKE 342

Query: 394 LKASIEKGVAF 404
           L  SIEKGV+F
Sbjct: 343 LAGSIEKGVSF 353

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/314 (66%), Positives = 245/314 (78%), Gaps = 2/314 (0%)

Query: 93  SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
            FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G 
Sbjct: 44  GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQ 103

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++L  AL G+++VVIPAGVPRKPGMTRDDLF INA IVKTL E +A  CP A +++ISNP
Sbjct: 104 QQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNP 163

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   L   DV+VPVVGGHAG+
Sbjct: 164 VNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGV 223

Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ L
Sbjct: 224 TILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 283

Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
           R L GD  V EC FV S +TELPFFA++V+LGRNG++ + S  L  L EYE+  LE  K 
Sbjct: 284 RGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS--LGPLNEYERIGLEKAKK 341

Query: 393 ELKASIEKGVAFAQ 406
           EL  SIEKGV+F +
Sbjct: 342 ELAGSIEKGVSFIR 355

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/347 (61%), Positives = 264/347 (76%), Gaps = 12/347 (3%)

Query: 63  KESCSALRST--FARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
           + S S +RS    AR+  SSE  PQ         KVAVLGAAGGIGQPLALL+K++PLVS
Sbjct: 2   RPSMSLIRSVSRVARRGYSSESVPQR--------KVAVLGAAGGIGQPLALLMKLNPLVS 53

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
            L LYD+    GVAAD+SH NT S+V  + G E+L  AL+G +VV+IPAGVPRKPGMTRD
Sbjct: 54  QLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRD 113

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINA IV++L  A+A  CP A I++ISNPVNSTVPIA+EVLK+ GVYD KKLFGVTT
Sbjct: 114 DLFNINAGIVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTT 173

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRA TF A K  + + +V+VPVVGGHAGITILPL S+  P  + +D+ +  LT R Q
Sbjct: 174 LDVVRAKTFYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQ 233

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           + GTEVVEAKAG GSATLSMAYA A F ++ L  L+G  DV EC +V+S++TELPFFAS+
Sbjct: 234 DGGTEVVEAKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASK 293

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
           V+LG+NGVE ++  DL  L+++E++ L+ LKPELK+SIEKG+ FA +
Sbjct: 294 VRLGKNGVEEVL--DLGPLSDFEKEGLKQLKPELKSSIEKGIKFANQ 338

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/321 (64%), Positives = 252/321 (78%), Gaps = 2/321 (0%)

Query: 86  YALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ 145
           +A +     KVAVLGAAGGIGQPLALL+K++PLVS L LYD+    GVAAD+ H NT S+
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAF 205
           V  + G E+L  AL+G +VV+IPAGVPRKPGMTRDDLFNINA IVK+L  A+A  CP+A 
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPV 265
           I++ISNPVNSTVPIAAEV K+ G YD KKLFGVTTLDVVRA TF A K N+ + +V+VPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 266 VGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA 325
           +GGHAGITILPL S+  P  + +D+ +  LT R Q+ GTEVVEAKAG GSATLSMAYA A
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 326 RFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK 385
            F ++ L+ L+G  DV EC FV+S +TELPFFAS+VKLG+NGVES++  DL  L+++E++
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVL--DLGPLSDFEKE 324

Query: 386 ALEALKPELKASIEKGVAFAQ 406
            LE LKPELKASIEKG+ FA 
Sbjct: 325 GLEKLKPELKASIEKGIQFAN 345

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/316 (65%), Positives = 250/316 (79%), Gaps = 2/316 (0%)

Query: 92  ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTG 151
           + FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV +D+SH +T + V  F G
Sbjct: 40  SGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLG 99

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            ++L  AL G+++V+IPAGVPRKPGMTRDDLFNINA IVKTL EA+A  CP A +++ISN
Sbjct: 100 QQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISN 159

Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PVNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   +   DVDVPVVGGHAG
Sbjct: 160 PVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAG 219

Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
           ITILPLLS+  P  SFT +E+  LT RIQN G EVVEAKAGAGSATLSMAYAA +F ++ 
Sbjct: 220 ITILPLLSQIKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADAC 279

Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
           L AL GD  + EC +V S +TELPFFAS+V+LGR GVE ++   L  L +YE+++LE  K
Sbjct: 280 LHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEILP--LGPLNDYERESLEKAK 337

Query: 392 PELKASIEKGVAFAQK 407
            EL ASIEKG++F +K
Sbjct: 338 KELAASIEKGISFIRK 353

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/342 (59%), Positives = 262/342 (76%), Gaps = 5/342 (1%)

Query: 69  LRSTFARKAQSSEQ---RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLY 125
            RS   R + S++Q   R  ++       KVA+LGAAGGIGQPLALL+K++PLVS+L LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 126 DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNI 185
           D+ N  GVAAD+ H NT S+V+ + G + LA AL+G ++V+IPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 186 NANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR 245
           NA IVK L  A+A  CP A I++ISNPVNSTVPIAAE+ K+ G+YD KKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 246 ANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTE 305
           A TF A K N+ + +V+VPV+GGHAG+TILPL S+  P  + + + +  LT R Q+ GTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 306 VVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGR 365
           VVEAKAG GSATLSMAYA A F ++ L+ L+G  DV EC +V+S +TELPFFAS+V+LG+
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 366 NGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
           NGVE ++  DL  L+++E++ LEALKPELK+SIEKGV FA +
Sbjct: 302 NGVEEVL--DLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 245/314 (78%), Gaps = 2/314 (0%)

Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV N  GV AD+SH +T + V  F G  
Sbjct: 43  FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQP 102

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           +L  AL G+++V+IPAGVPRKPGMTRDDLFNINA IV+TL EA+A  CP A ++IISNPV
Sbjct: 103 QLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPV 162

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
           NSTVPIAAEV K+ G +DPKKL GVT LDVVRANTFVA+  +L   +V+VPVVGGHAG+T
Sbjct: 163 NSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVT 222

Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
           ILPLLS+  P  SFT +E+  LT RIQN GTEVVEAKAGAGSATLSMAYAA  F ++ LR
Sbjct: 223 ILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLR 282

Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
            L GD ++ EC +V S++TELPFFAS+V+LGR G++ +    L  L EYE+  LE  K E
Sbjct: 283 GLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYG--LGPLNEYERMGLEKAKKE 340

Query: 394 LKASIEKGVAFAQK 407
           L  SI KGV FA+K
Sbjct: 341 LSVSIHKGVTFAKK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/342 (59%), Positives = 258/342 (75%), Gaps = 5/342 (1%)

Query: 69  LRSTFARKAQSSEQ---RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLY 125
            RS   R A   +Q   R  +A +     KV +LGAAGGIGQPL+LL+K++PLVS+L LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 126 DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNI 185
           D+ N  GVAAD+ H NT SQV  + G ++L  AL+G ++V+IPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 186 NANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR 245
           NA IVK L  A+A  CP A +++ISNPVNSTVPIAAE+ K+ G YD KKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 246 ANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTE 305
           A TF A K ++ + +V+VPVVGGHAGITILPL S+  P  + +D+ +  LT R Q+ GTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 306 VVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGR 365
           VVEAKAG GSATLSMAYA A F ++ L+ L+G  +V EC FV+S +TELPFFAS+V+LG+
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 366 NGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
           NGVE ++  DL  L+++E++ LEALK ELK+SIEKG+ FA +
Sbjct: 302 NGVEEVL--DLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
114479586	412	malate dehydrogenase [Citrus junos]	1.0	1.0	0.987	0.0
224120822	412	predicted protein [Populus trichocarpa]	1.0	1.0	0.856	0.0
255547385	412	malate dehydrogenase, putative [Ricinus	1.0	1.0	0.854	0.0
224120818	412	predicted protein [Populus trichocarpa]	0.995	0.995	0.846	0.0
224119308	412	predicted protein [Populus trichocarpa]	0.970	0.970	0.85	0.0
225457407	413	PREDICTED: malate dehydrogenase, chlorop	1.0	0.997	0.823	0.0
5123836	412	NAD-malate dehydrogenase [Nicotiana taba	1.0	1.0	0.808	0.0
388501768	411	unknown [Lotus japonicus]	0.997	1.0	0.808	0.0
356512147	413	PREDICTED: malate dehydrogenase, chlorop	1.0	0.997	0.806	0.0
3273828	413	nodule-enhanced malate dehydrogenase [Gl	1.0	0.997	0.803	0.0

>gi|114479586|gb|ABI75147.1| malate dehydrogenase [Citrus junos]

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/412 (98%), Positives = 409/412 (99%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICES+TSF
Sbjct: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESDTSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
           LNKESCSALRSTFARKAQSSEQRPQ ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS
Sbjct: 61  LNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVN VVIPAGVPRKPGMTRD
Sbjct: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNDVVIPAGVPRKPGMTRD 180

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT
Sbjct: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVAQKKNLKLIDVDVPV+GGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ
Sbjct: 241 LDVVRANTFVAQKKNLKLIDVDVPVIGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAKAGAGSATLSMAYAAARFVESSLR LDGDGDVYECVFVESNLTELPFFASR
Sbjct: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRTLDGDGDVYECVFVESNLTELPFFASR 360

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA
Sbjct: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120822|ref|XP_002330960.1| predicted protein [Populus trichocarpa] gi|222873154|gb|EEF10285.1| predicted protein [Populus trichocarpa]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/412 (85%), Positives = 378/412 (91%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAA SA TFS+ ST +FG KA QLPQSK S VRFNS+ SL +FSGLKA T V CES +SF
Sbjct: 1   MAAASAATFSVGSTFSFGTKASQLPQSKLSSVRFNSQSSLATFSGLKAATFVTCESESSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
           L KES +ALR + A KAQ S QR Q+ L PQAS+KVAVLGAAGGIGQPLALLIKMSPLVS
Sbjct: 61  LGKESNAALRCSVAPKAQKSSQRSQHRLNPQASYKVAVLGAAGGIGQPLALLIKMSPLVS 120

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           ALHLYD+ NVKGVAADLSHCNTPSQVLDFTG  EL ++LKGV++VVIPAGVPRKPGMTRD
Sbjct: 121 ALHLYDIANVKGVAADLSHCNTPSQVLDFTGAAELPNSLKGVDIVVIPAGVPRKPGMTRD 180

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINA+IVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLK+KGVYDPKKLFGVTT
Sbjct: 181 DLFNINASIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTT 240

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVA+KKNLKLIDVDVPVVGGHAGITILPLLSKT PSVSFTDEEV +LTVRIQ
Sbjct: 241 LDVVRANTFVAEKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVSFTDEEVQELTVRIQ 300

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGD DVYEC FV+S+LTELPFFASR
Sbjct: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTELPFFASR 360

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           VKLGR GVE++ISSDLQGLTEYEQKALEALKPELKASIEKG+AFAQ++ VAA
Sbjct: 361 VKLGRKGVETIISSDLQGLTEYEQKALEALKPELKASIEKGIAFAQREPVAA 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547385|ref|XP_002514750.1| malate dehydrogenase, putative [Ricinus communis] gi|223546354|gb|EEF47856.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/412 (85%), Positives = 372/412 (90%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAATSA TFSI S ++FGPKA QLPQSK   VRFNS+ S+VSFS LKA TSV  ES +SF
Sbjct: 1   MAATSAATFSIGSAVSFGPKASQLPQSKSLAVRFNSQNSIVSFSNLKASTSVNFESESSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
             KES  ALR +FA KA  S QR QY L  QAS+KVA+LGAAGGIGQPLALL+KMSPLVS
Sbjct: 61  FGKESTMALRGSFATKAHKSSQRSQYQLNLQASYKVAILGAAGGIGQPLALLVKMSPLVS 120

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           ALHLYD+ NVKGVAADLSHCNTPSQVLDFTG  ELA+ LKGV++VVIPAGVPRKPGMTRD
Sbjct: 121 ALHLYDIANVKGVAADLSHCNTPSQVLDFTGAAELANCLKGVDIVVIPAGVPRKPGMTRD 180

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLK KGVYDPKKLFGVTT
Sbjct: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKLKGVYDPKKLFGVTT 240

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKT PS SFTDEE  +LTVRIQ
Sbjct: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSASFTDEETQELTVRIQ 300

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGD DVYEC FV+S+LTELPFFASR
Sbjct: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECSFVQSDLTELPFFASR 360

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           VK+G+ GVE+LISSDLQGLTEYEQKALE LKPELKASIEKG+AFAQKQ VAA
Sbjct: 361 VKIGKKGVEALISSDLQGLTEYEQKALEDLKPELKASIEKGIAFAQKQPVAA 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120818|ref|XP_002330959.1| predicted protein [Populus trichocarpa] gi|222873153|gb|EEF10284.1| predicted protein [Populus trichocarpa]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/410 (84%), Positives = 370/410 (90%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAATSA TFSI STI+ G K  QLPQSKP  VRFNS+ +L +FSGLKA   V CES +SF
Sbjct: 1   MAATSAATFSIGSTISLGTKGSQLPQSKPLSVRFNSQNTLATFSGLKAAIFVKCESESSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
           L KES +ALR   A KAQ S QR QY L PQAS+KVA+LGAAGGIGQPLALL+KMSPL+S
Sbjct: 61  LGKESSAALRGAAAPKAQKSSQRSQYRLNPQASYKVAILGAAGGIGQPLALLVKMSPLIS 120

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           ALH+YD+ NVKGVAADLSHCNTPSQVL FTG  EL ++LKGV+VVVIPAGVPRKPGMTRD
Sbjct: 121 ALHIYDIANVKGVAADLSHCNTPSQVLGFTGSSELPNSLKGVDVVVIPAGVPRKPGMTRD 180

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLF+INANIVKTLVEAVADNCPDAFIHIISNPVNST+PIAAEVLKQKGVYDPKKLFGVTT
Sbjct: 181 DLFSINANIVKTLVEAVADNCPDAFIHIISNPVNSTLPIAAEVLKQKGVYDPKKLFGVTT 240

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKT P VSF DEEV +LTVRIQ
Sbjct: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTRPPVSFNDEEVQELTVRIQ 300

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAK GAGSATLSMAYAAARFVESSLRALDGD DVYEC FV+S+LTELPFFASR
Sbjct: 301 NAGTEVVEAKEGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTELPFFASR 360

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAV 410
           VKLGR GVE++ISSDLQGLTEYEQKALEALKPELKASIEKG+AFAQKQ V
Sbjct: 361 VKLGRKGVEAIISSDLQGLTEYEQKALEALKPELKASIEKGIAFAQKQPV 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119308|ref|XP_002331279.1| predicted protein [Populus trichocarpa] gi|222873704|gb|EEF10835.1| predicted protein [Populus trichocarpa]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/400 (85%), Positives = 366/400 (91%)

Query: 13  STIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRST 72
           ST+AFG KA QLPQSKPS VRF S+KSL +FSGLKA T V CES +SFL KES +ALR +
Sbjct: 13  STVAFGTKASQLPQSKPSAVRFKSQKSLATFSGLKAATFVKCESESSFLGKESSAALRGS 72

Query: 73  FARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG 132
              KAQ S Q+ QY L PQAS+KVA+LGAAGGIGQPLALL+KMSPLVSALHLYD+ NVKG
Sbjct: 73  VVPKAQKSSQKSQYHLNPQASYKVAILGAAGGIGQPLALLVKMSPLVSALHLYDIANVKG 132

Query: 133 VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKT 192
           VAAD+SHCNTP+QVLDFTG  EL ++LKGV+VVVIPAG+PRKPGMTRDDLFNINA+IVK 
Sbjct: 133 VAADISHCNTPAQVLDFTGASELPNSLKGVDVVVIPAGIPRKPGMTRDDLFNINASIVKN 192

Query: 193 LVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQ 252
           LVEAVADNCPDAFIHIISNPVNSTVPIAAEVLK+KGVYDPKKLFGVTTLDVVRANTFVAQ
Sbjct: 193 LVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQ 252

Query: 253 KKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAG 312
           KKNLKLIDVDVPVVGGHAGITILPLLSKT PSVSFTDEEV +LTVRIQNAGTEVV+AKAG
Sbjct: 253 KKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVSFTDEEVQELTVRIQNAGTEVVQAKAG 312

Query: 313 AGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLI 372
           AGSATLSMAYAAARFVESSLRALDGD DVYEC FV+S+LTELPFFASRVKLGR GVE+LI
Sbjct: 313 AGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTELPFFASRVKLGRKGVEALI 372

Query: 373 SSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           SSDLQGLT YEQ+ALEALKPELKASIEKG+A AQKQ V A
Sbjct: 373 SSDLQGLTTYEQEALEALKPELKASIEKGIASAQKQPVGA 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457407|ref|XP_002284909.1| PREDICTED: malate dehydrogenase, chloroplastic [Vitis vinifera]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/413 (82%), Positives = 370/413 (89%), Gaps = 1/413 (0%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAATS TT +I S+ + G KA  L +SK  GV FNS+  L SFSGLKA +S+ CES  SF
Sbjct: 1   MAATSLTTITIGSSASIGSKAIPLSRSKCFGVSFNSQNYLKSFSGLKAASSISCESEASF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASF-KVAVLGAAGGIGQPLALLIKMSPLV 119
           L KES +ALR++FA KA     R QY LQPQAS  KVA+LGAAGGIGQPLALLIKMSPLV
Sbjct: 61  LGKESSAALRNSFAPKAGKQNLRHQYYLQPQASSSKVAILGAAGGIGQPLALLIKMSPLV 120

Query: 120 SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTR 179
           SALHLYD+ NVKGVAADLSHCNTP+QVLDFTG  ELA++LKGV+VVVIPAGVPRKPGMTR
Sbjct: 121 SALHLYDIANVKGVAADLSHCNTPAQVLDFTGTSELANSLKGVDVVVIPAGVPRKPGMTR 180

Query: 180 DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239
           DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA EVL++KGVYDPKK+FGVT
Sbjct: 181 DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAVEVLRRKGVYDPKKVFGVT 240

Query: 240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRI 299
           TLDVVRANTFVAQKKNL+LIDVDVPVVGGHAGITILPLLS+T PSVSFTDEEV +LTVRI
Sbjct: 241 TLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSRTKPSVSFTDEEVEELTVRI 300

Query: 300 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS 359
           QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGD DVYEC +V+S LTELPFFAS
Sbjct: 301 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDTDVYECAYVQSELTELPFFAS 360

Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           RVK+G+ G+E++ISSDLQGLTEYE+KALEALKPELKASIEKGVAFAQKQ V A
Sbjct: 361 RVKIGKKGIEAVISSDLQGLTEYEEKALEALKPELKASIEKGVAFAQKQTVTA 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5123836|emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/412 (80%), Positives = 364/412 (88%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAATSATTFS+ S  + G K   + QSK   V+F SK SL SFSGLKA T V CES +SF
Sbjct: 1   MAATSATTFSVGSATSLGCKGSSVSQSKAFSVKFYSKNSLKSFSGLKAATDVSCESESSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
           L KES + L+ +F  KAQ   +     +QPQAS+KVAVLGA+GGIGQPL+LL+KMSPLVS
Sbjct: 61  LGKESVAVLKQSFTPKAQKENKGYGNCVQPQASYKVAVLGASGGIGQPLSLLVKMSPLVS 120

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
            L+LYD+ NVKGVAADLSHCNTPS+V DFTG  ELA+ LKGVNVVVIPAGVPRKPGMTRD
Sbjct: 121 ELNLYDIANVKGVAADLSHCNTPSKVSDFTGASELANCLKGVNVVVIPAGVPRKPGMTRD 180

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLK+KGVYDPKKLFGVTT
Sbjct: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKRKGVYDPKKLFGVTT 240

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVAQKK+L+LIDVDVPVVGGHAGITILPLLSKT PS +FTDEEV +LTVRIQ
Sbjct: 241 LDVVRANTFVAQKKSLRLIDVDVPVVGGHAGITILPLLSKTKPSTTFTDEEVQELTVRIQ 300

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGD DVYEC FV+S+LTELPFFASR
Sbjct: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECAFVQSDLTELPFFASR 360

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           VKLG+NGVE+LI SDLQGLTEYEQKAL+ALKPELK+SIEKG+ F QK+ VAA
Sbjct: 361 VKLGKNGVEALIPSDLQGLTEYEQKALDALKPELKSSIEKGIGFVQKEPVAA 412

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501768|gb|AFK38950.1| unknown [Lotus japonicus]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/412 (80%), Positives = 361/412 (87%), Gaps = 1/412 (0%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAA SA TF+I +  +   +   LPQSK  G+RF S+  L  F GL+AV+SV CE  +SF
Sbjct: 1   MAAISAATFTIGAPTSLYQRGSSLPQSKSFGLRFTSQNHLNGFCGLRAVSSVRCEVESSF 60

Query: 61  LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVS 120
             KE+ SALR++FA KAQ  E R Q+ LQPQAS+KVAVLGAAGGIGQPLALLIKMSPLVS
Sbjct: 61  SGKETGSALRASFATKAQK-ESRNQHQLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVS 119

Query: 121 ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
            LHLYD+ NVKGVAAD+SHCNTPSQV DFTG  EL   LKGVNVVVIPAGVPRKPG TRD
Sbjct: 120 DLHLYDIANVKGVAADISHCNTPSQVRDFTGASELGDCLKGVNVVVIPAGVPRKPGTTRD 179

Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           DLFNINA IV+ LV AVADNCP AFIHIISNPVNSTVPIAAE+LKQKGVYDPKKLFGVTT
Sbjct: 180 DLFNINAGIVRDLVSAVADNCPGAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVTT 239

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQ 300
           LDVVRANTFVAQ+KNLKLIDVDVPVVGGHAGITILPLLSKT PS SFTDEE+ +LTVRIQ
Sbjct: 240 LDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIEELTVRIQ 299

Query: 301 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR 360
           NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYEC +V+S+LTELPFFASR
Sbjct: 300 NAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASR 359

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           VKLG+ GVE+LI SDLQGLTEYEQKALEALKPELK+SIE+GVAFAQKQ VAA
Sbjct: 360 VKLGKKGVEALIPSDLQGLTEYEQKALEALKPELKSSIERGVAFAQKQTVAA 411

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512147|ref|XP_003524782.1| PREDICTED: malate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/413 (80%), Positives = 365/413 (88%), Gaps = 1/413 (0%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAA  A TF+I +T + G +   LPQ K SG++FNS+  L SF GLKA++SV CES +SF
Sbjct: 1   MAAAPAATFTIGTTGSLGQRGNSLPQLKSSGLKFNSQNHLKSFCGLKAMSSVRCESESSF 60

Query: 61  LNKESCSALRSTFARKAQ-SSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLV 119
           L  ++ +ALR++FA KAQ  ++Q   Y  QPQAS+KVAVLGAAGGIGQPLALLIKMSPLV
Sbjct: 61  LVNKTGAALRASFASKAQKENDQNFNYNSQPQASYKVAVLGAAGGIGQPLALLIKMSPLV 120

Query: 120 SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTR 179
           S LHLYD+ NVKGVAAD+SHCNTPSQV DFTG  ELA+ LK VNVVVIPAGVPRKPGMTR
Sbjct: 121 SDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELANCLKDVNVVVIPAGVPRKPGMTR 180

Query: 180 DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239
           DDLFNINA IV+ LV AVADN PDAFI IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT
Sbjct: 181 DDLFNINAGIVRDLVSAVADNSPDAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 240

Query: 240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRI 299
           TLDVVRANTFVAQ+KNLKLIDVDVPVVGGHAGITILPLLSKT PS SFTDEE+ +LTVRI
Sbjct: 241 TLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIEELTVRI 300

Query: 300 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS 359
           QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYEC +VES+LT+LPFFAS
Sbjct: 301 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVESDLTDLPFFAS 360

Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           RVKLGR GVE+LI SDLQGLT+YEQKALE+LKPEL ASIEKG+AFAQKQAVAA
Sbjct: 361 RVKLGRKGVEALIPSDLQGLTDYEQKALESLKPELMASIEKGIAFAQKQAVAA 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3273828|gb|AAC24855.1| nodule-enhanced malate dehydrogenase [Glycine max]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/413 (80%), Positives = 365/413 (88%), Gaps = 1/413 (0%)

Query: 1   MAATSATTFSITSTIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSF 60
           MAA  A TF+I +T + G +   LPQ K SG++FNS+  L SF GLKA++SV CES +SF
Sbjct: 1   MAAAPAATFTIGTTGSLGQRGNSLPQLKSSGLKFNSQNHLKSFCGLKAMSSVRCESESSF 60

Query: 61  LNKESCSALRSTFARKAQ-SSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLV 119
           L  ++ +ALR++FA KAQ  ++Q   Y  QPQAS+KVAVLGAAGGIGQPLALLIKMSPL+
Sbjct: 61  LVNKTGAALRASFASKAQKENDQNFNYNSQPQASYKVAVLGAAGGIGQPLALLIKMSPLI 120

Query: 120 SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTR 179
           S LHLYD+ NVKGVAAD+SHCNTPSQV DFTG  ELA+ LK VNVVVIPAGVPRKPGMTR
Sbjct: 121 SDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELANCLKSVNVVVIPAGVPRKPGMTR 180

Query: 180 DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239
           DDLFNINA IV+ LV AVADN PDAFI IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT
Sbjct: 181 DDLFNINAGIVRDLVSAVADNSPDAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 240

Query: 240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRI 299
           TLDVVRANTFVAQ+KNLKLIDVDVPVVGGHAGITILPLLSKT PS SFTDEE+ +LTVRI
Sbjct: 241 TLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTKPSASFTDEEIEELTVRI 300

Query: 300 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS 359
           QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYEC +VES+LT+LPFFAS
Sbjct: 301 QNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVESDLTDLPFFAS 360

Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
           RVKLGR GVE+LI SDLQGLT+YEQKALE+LKPEL ASIEKG+AFAQKQAVAA
Sbjct: 361 RVKLGRKGVEALIPSDLQGLTDYEQKALESLKPELMASIEKGIAFAQKQAVAA 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.929	0.950	0.798	7e-157
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.815	0.985	0.601	3.7e-103
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.757	0.881	0.652	4.7e-103
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.815	0.985	0.595	1.8e-101
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.808	0.985	0.577	3.8e-94
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.808	0.985	0.577	4.8e-94
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.808	0.985	0.574	1e-93
RGD|619719	338	Mdh2 "malate dehydrogenase 2,	0.808	0.985	0.577	1e-93
UNIPROTKB|Q32LG3	338	MDH2 "Malate dehydrogenase, mi	0.808	0.985	0.574	1.3e-93
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.771	0.943	0.6	1.6e-93

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 314/393 (79%), Positives = 348/393 (88%)

Query:    20 KAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQS 79
             KA  +P S+   V+FNS   + SF+GLK+ TS+I  S++S L K     LR +   KAQ+
Sbjct:    19 KASSIPHSRLQSVKFNS---VPSFTGLKS-TSLISGSDSSSLAK----TLRGSVT-KAQT 69

Query:    80 SEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH 139
             S+++P Y  +  AS+KVAVLGAAGGIGQPL+LLIKMSPLVS LHLYD+ NVKGVAADLSH
Sbjct:    70 SDKKP-YGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSH 128

Query:   140 CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD 199
             CNTPSQV DFTGP ELA  LK VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVA+
Sbjct:   129 CNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAE 188

Query:   200 NCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLI 259
             NCP+AFIHIISNPVNSTVPIAAEVLK+KGVYDPKKLFGVTTLDVVRANTFV+QKKNLKLI
Sbjct:   189 NCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLI 248

Query:   260 DVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
             DVDVPV+GGHAGITILPLLSKT PSV+FTDEE+ +LTVRIQNAGTEVV+AKAGAGSATLS
Sbjct:   249 DVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLS 308

Query:   320 MAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGL 379
             MAYAAARFVESSLRALDGDGDVYEC FVES LT+LPFFASRVK+G+NG+E++I SDLQGL
Sbjct:   309 MAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGL 368

Query:   380 TEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
             TEYEQKALEALK ELKASI+KGVAFA K A AA
Sbjct:   369 TEYEQKALEALKVELKASIDKGVAFANKPAAAA 401

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 205/341 (60%), Positives = 262/341 (76%)

Query:    70 RSTFARKAQSSEQ---RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
             RS   R + S++Q   R  ++       KVA+LGAAGGIGQPLALL+K++PLVS+L LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:   127 VMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNIN 186
             + N  GVAAD+ H NT S+V+ + G + LA AL+G ++V+IPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   187 ANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRA 246
             A IVK L  A+A  CP A I++ISNPVNSTVPIAAE+ K+ G+YD KKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEV 306
              TF A K N+ + +V+VPV+GGHAG+TILPL S+  P  + + + +  LT R Q+ GTEV
Sbjct:   183 RTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEV 242

Query:   307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRN 366
             VEAKAG GSATLSMAYA A F ++ L+ L+G  DV EC +V+S +TELPFFAS+V+LG+N
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKN 302

Query:   367 GVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
             GVE ++  DL  L+++E++ LEALKPELK+SIEKGV FA +
Sbjct:   303 GVEEVL--DLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 205/314 (65%), Positives = 245/314 (78%)

Query:    94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
             FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV N  GV AD+SH +T + V  F G  
Sbjct:    43 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQP 102

Query:   154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
             +L  AL G+++V+IPAGVPRKPGMTRDDLFNINA IV+TL EA+A  CP A ++IISNPV
Sbjct:   103 QLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPV 162

Query:   214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
             NSTVPIAAEV K+ G +DPKKL GVT LDVVRANTFVA+  +L   +V+VPVVGGHAG+T
Sbjct:   163 NSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVT 222

Query:   274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
             ILPLLS+  P  SFT +E+  LT RIQN GTEVVEAKAGAGSATLSMAYAA  F ++ LR
Sbjct:   223 ILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLR 282

Query:   334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
              L GD ++ EC +V S++TELPFFAS+V+LGR G++ +    L  L EYE+  LE  K E
Sbjct:   283 GLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYG--LGPLNEYERMGLEKAKKE 340

Query:   394 LKASIEKGVAFAQK 407
             L  SI KGV FA+K
Sbjct:   341 LSVSIHKGVTFAKK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 203/341 (59%), Positives = 258/341 (75%)

Query:    70 RSTFARKAQSSEQ---RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
             RS   R A   +Q   R  +A +     KV +LGAAGGIGQPL+LL+K++PLVS+L LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:   127 VMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNIN 186
             + N  GVAAD+ H NT SQV  + G ++L  AL+G ++V+IPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   187 ANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRA 246
             A IVK L  A+A  CP A +++ISNPVNSTVPIAAE+ K+ G YD KKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEV 306
              TF A K ++ + +V+VPVVGGHAGITILPL S+  P  + +D+ +  LT R Q+ GTEV
Sbjct:   183 RTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEV 242

Query:   307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRN 366
             VEAKAG GSATLSMAYA A F ++ L+ L+G  +V EC FV+S +TELPFFAS+V+LG+N
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKN 302

Query:   367 GVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
             GVE ++  DL  L+++E++ LEALK ELK+SIEKG+ FA +
Sbjct:   303 GVEEVL--DLGPLSDFEKEGLEALKAELKSSIEKGIKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 194/336 (57%), Positives = 244/336 (72%)

Query:    71 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV 130
             S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + 
Sbjct:     3 SALARPAGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:   131 KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV 190
              GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   191 KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250
              TL  A A +CPDA I IISNPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FV
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
             A+ K L    V VPV+GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
             AGAGSATLSMAYA ARFV S + A++G   V EC FV+S  T+ P+F++ + LG+ G+E 
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   371 LISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
              +   +  ++ +E+K +    PELKASI+KG  F +
Sbjct:   302 NLG--IGKISPFEEKMIAEAIPELKASIKKGEEFVK 335

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 194/336 (57%), Positives = 244/336 (72%)

Query:    71 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV 130
             S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + 
Sbjct:     3 SALARPAGAALRR-SFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:   131 KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV 190
              GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   191 KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250
              TL  A A +CPDA I IISNPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FV
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
             A+ K L    V VPV+GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
             AGAGSATLSMAYA ARFV S + A++G   V EC FV+S  T+ P+F++ + LG+ G+E 
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   371 LISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
              +   +  ++ +E+K +    PELKASI+KG  F +
Sbjct:   302 NLG--IGKISPFEEKMIAEAIPELKASIKKGEEFVK 335

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 193/336 (57%), Positives = 245/336 (72%)

Query:    71 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV 130
             S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + 
Sbjct:     3 SALARPAGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:   131 KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV 190
              GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   191 KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250
              TL  A A +CP+A + II+NPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRANTFV
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
             A+ K L    V+VPV+GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
             AGAGSATLSMAYA ARFV S + A++G   V EC FV+S  TE  +F++ + LG+ G+E 
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEK 301

Query:   371 LISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
              +   +  +T +E+K +    PELKASI+KG  F +
Sbjct:   302 NLG--IGKITPFEEKMIAEAIPELKASIKKGEDFVK 335

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 194/336 (57%), Positives = 244/336 (72%)

Query:    71 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV 130
             S  AR   ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + 
Sbjct:     3 SALARPVGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:   131 KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV 190
              GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   191 KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250
              TL  A A +CP+A I IISNPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRANTFV
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
             A+ K L    V+VPV+GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
             AGAGSATLSMAYA ARFV S + A++G   V EC FV+S  TE  +F++ + LG+ G+E 
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEK 301

Query:   371 LISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
              +   +  +T +E+K +    PELKASI+KG  F +
Sbjct:   302 NLG--IGKITPFEEKMIAEAIPELKASIKKGEDFVK 335

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=ISO;IDA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO;ISS

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q32LG3 MDH2 "Malate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 193/336 (57%), Positives = 246/336 (73%)

Query:    71 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV 130
             S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + 
Sbjct:     3 SALARPAGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:   131 KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV 190
              GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   191 KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250
              TL  A A +CP+A I IISNPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FV
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
             A+ K+L    V+VPV+GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AK
Sbjct:   182 AELKDLDPARVNVPVIGGHAGKTIIPLISQCTPKVEFPQDQLTTLTGRIQEAGTEVVKAK 241

Query:   311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
             AGAGSATLSMAYA ARFV S + A++G   V EC FV+S  T+ P+F++ + LG+ G+E 
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   371 LISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
              +   +  ++ +E+K +    PELKASI+KG  F +
Sbjct:   302 NLG--IGKVSPFEEKMIAEAIPELKASIKKGEEFVK 335

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 192/320 (60%), Positives = 237/320 (74%)

Query:    87 ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV 146
             A   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V
Sbjct:    17 ATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANV 76

Query:   147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
               F GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA+IV TL  A A +CP+A I
Sbjct:    77 KGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCPEAMI 136

Query:   207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVV 266
              IISNPVNST+PI +EV K+ GVY+P ++FGVTTLD+VRANTFVA+ K L    V VPV+
Sbjct:   137 CIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVSVPVI 196

Query:   267 GGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
             GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AKAGAGSATLSMAYA AR
Sbjct:   197 GGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 256

Query:   327 FVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386
             FV S + A++G   V EC FV S  TE P+F++ + LG+NG+E  +   +  +T +E+K 
Sbjct:   257 FVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLG--IGKITPFEEKM 314

Query:   387 LEALKPELKASIEKGVAFAQ 406
             +     ELKASI+KG  FA+
Sbjct:   315 VAEAMAELKASIKKGEDFAK 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.5701	0.8179	0.9882	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5710	0.8131	0.9911	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5710	0.8131	0.9911	yes	no
B5XSQ7	MDH_KLEP3	1, ., 1, ., 1, ., 3, 7	0.5791	0.7524	0.9935	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.5965	0.8155	0.9682	N/A	no
B7LRL0	MDH_ESCF3	1, ., 1, ., 1, ., 3, 7	0.5822	0.7524	0.9935	yes	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.6109	0.8131	0.9882	N/A	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
Q0T052	MDH_SHIF8	1, ., 1, ., 1, ., 3, 7	0.5917	0.7524	0.9935	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5710	0.8131	0.9911	yes	no
Q9SN86	MDHP_ARATH	1, ., 1, ., 1, ., 3, 7	0.77	0.9417	0.9627	yes	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.5854	0.7524	0.9935	yes	no
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.5791	0.7524	0.9935	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5535	0.8058	0.9736	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5680	0.8131	0.9911	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5739	0.8131	0.9911	yes	no
A7MNR3	MDH_CROS8	1, ., 1, ., 1, ., 3, 7	0.5854	0.7524	0.9935	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5739	0.8131	0.9911	yes	no
B7NDL4	MDH_ECOLU	1, ., 1, ., 1, ., 3, 7	0.5854	0.7524	0.9935	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.5759	0.7524	0.9935	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5910	0.7451	0.9839	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5917	0.7524	0.9935	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5680	0.8131	0.9911	N/A	no
Q83Q04	MDH_SHIFL	1, ., 1, ., 1, ., 3, 7	0.5917	0.7524	0.9935	yes	no
A8AQC8	MDH_CITK8	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.5886	0.7524	0.9935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01550047	malate dehydrogenase (EC-1.1.1.37) (412 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_1480010	citrate synthase (EC-2.3.3.1) (478 aa)				•		•	•		0.928
	fgenesh4_pg.C_LG_XV000664	malate synthase (EC-2.3.3.9) (554 aa)						•	•		0.920
	eugene3.00021795	aspartate ammonia-lyase (EC-4.2.1.2) (490 aa)						•	•		0.915
	estExt_Genewise1_v1.C_LG_XVI2794	citrate synthase (EC-2.3.3.1) (509 aa)						•	•		0.915
	estExt_Genewise1_v1.C_LG_XIV2957	citrate synthase (EC-2.3.3.1) (512 aa)						•	•		0.915
	estExt_Genewise1_v1.C_LG_VII3984	phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (664 aa)						•	•		0.905
	estExt_fgenesh4_pg.C_LG_II0983	phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (667 aa)						•	•		0.905
	gw1.I.387.1	RecName- Full=Malic enzyme; (595 aa)						•			0.899
	grail3.0036025402	ATP citrate (pro-S)-lyase (EC-2.3.3.8) (424 aa)						•			0.899
	grail3.0013044701	aspartate transaminase (EC-2.6.1.1) (466 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-149
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-148
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-138
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	5e-80
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	3e-54
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	9e-46
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	2e-44
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	8e-44
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-41
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	3e-33
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	1e-28
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	4e-28
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-26
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-25
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	9e-24
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	7e-23
cd00704	323	cd00704, MDH, Malate dehydrogenase	7e-21
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	2e-18
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-18
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	2e-15
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-14
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	4e-14
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-13
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	1e-12
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	4e-12
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	1e-11
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	8e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	4e-10
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	3e-09
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	2e-04
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	8e-04
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	0.002
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	0.003

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  616 bits (1592), Expect = 0.0
 Identities = 237/322 (73%), Positives = 267/322 (82%), Gaps = 2/322 (0%)

Query: 79  SSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLS 138
           +S  R   A      FKVAVLGAAGGIGQPL+LL+KM+PLVS LHLYD+ N  GVAAD+S
Sbjct: 4   ASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVS 63

Query: 139 HCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVA 198
           H NTP+QV  F G ++L  ALKG ++V+IPAGVPRKPGMTRDDLFNINA IVKTL EAVA
Sbjct: 64  HINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVA 123

Query: 199 DNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL 258
            +CP+A ++IISNPVNSTVPIAAEVLK+ GVYDPKKLFGVTTLDVVRANTFVA+KK L  
Sbjct: 124 KHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDP 183

Query: 259 IDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
            DVDVPVVGGHAGITILPLLS+  P VSFTDEE+  LT RIQN GTEVVEAKAGAGSATL
Sbjct: 184 ADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATL 243

Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQG 378
           SMAYAAARF ++ LR L+G+ DV EC +V+S +TELPFFAS+V+LGRNGVE      L  
Sbjct: 244 SMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVE--EVLGLGP 301

Query: 379 LTEYEQKALEALKPELKASIEK 400
           L+EYEQK LEALKPELKASIEK
Sbjct: 302 LSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  541 bits (1397), Expect = 0.0
 Identities = 212/312 (67%), Positives = 245/312 (78%), Gaps = 2/312 (0%)

Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
            KVAVLGAAGGIGQPL+LL+K++PLVS L LYD++N  GVAADLSH NTP++V  + GPE
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           EL  ALKG +VVVIPAGVPRKPGMTRDDLFNINA IV+ L  AVA  CP A I IISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
           NSTVPIAAEVLK+ GVYDPK+LFGVTTLDVVRANTFVA+   L    V+VPV+GGH+G+T
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
           ILPLLS+  P  +F  EE+  LT RIQ  G EVV+AKAGAGSATLSMAYA ARF  S LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
            L G+  V EC +VES++TE PFFA+ V+LG+NGVE  +   L  L +YE+K LEA  PE
Sbjct: 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLG--LGKLNDYEKKLLEAALPE 298

Query: 394 LKASIEKGVAFA 405
           LK +IEKGV F 
Sbjct: 299 LKKNIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  425 bits (1094), Expect = e-149
 Identities = 188/315 (59%), Positives = 224/315 (71%), Gaps = 6/315 (1%)

Query: 95  KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGP 152
           KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LVE VA  CP A I II+NP
Sbjct: 61  EDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VN+TV IAAEVLK+ GVYD  KLFGVTTLDV+R+ TFVA+ K  +  +V+VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM  AAARF  S +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
           RAL G+  V EC +VE +     FFA  V LG+NGVE  +   +  L+ +EQ ALE +  
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERL--PIGTLSAFEQNALEGMLD 297

Query: 393 ELKASIEKGVAFAQK 407
            LK  I  G  F  K
Sbjct: 298 TLKKDIALGEEFVNK 312

Length = 312

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  421 bits (1085), Expect = e-148
 Identities = 196/314 (62%), Positives = 239/314 (76%), Gaps = 3/314 (0%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KVAVLGAAGGIGQPL+LL+K+ P VS L LYD+    GVAADLSH  T + V  F+G E 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
           L +ALKG +VVVIPAGVPRKPGMTRDDLFN+NA IVK LV AVA++CP A I +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 215 STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
           STVPIAAEVLK+KGVYDP KLFGVTTLD+VRANTFVA+ K    ++V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 275 LPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
           +PL+S+    V FT++++  L  RIQNAGTEVV+AKAGAGSATLSMA+A ARFV S +R 
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 335 LDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
           L G+  V EC +VES+  TE  FFA+ + LG+NGVE      +  L+ +E+K L    PE
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEK--RLGIGKLSSFEEKMLNGALPE 298

Query: 394 LKASIEKGVAFAQK 407
           LK +I+KG  F   
Sbjct: 299 LKKNIKKGEEFVAS 312

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  398 bits (1024), Expect = e-138
 Identities = 189/318 (59%), Positives = 239/318 (75%), Gaps = 5/318 (1%)

Query: 93  SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
            FKVAVLGAAGGIGQPL+LL+K +P VS L LYD++   GVAADLSH +TP++V  +   
Sbjct: 8   MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADG 67

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           E    AL+G ++V+I AGVPRKPGMTRDDLFN NA IV+ LV AVA + P A + I+SNP
Sbjct: 68  ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VNSTVPIAAE LK+ GVYDP+KLFGVTTLDVVRA  FVA+   +   DV+VPVVGGH+G+
Sbjct: 128 VNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGV 187

Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TI+PLLS+T   +S  +E+V  +T R+Q  G EVV+AK GAGSATLSMAYAAA +  S L
Sbjct: 188 TIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVL 245

Query: 333 RALDGDGDVYECVFVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
           +AL GD  + EC FVES++  E PFF+S V+LG+ GVE ++   +  L  YE++ LEA  
Sbjct: 246 KALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLP--IGPLNAYEEELLEAAV 303

Query: 392 PELKASIEKGVAFAQKQA 409
           P+LK +IEKG+ FA+K+ 
Sbjct: 304 PDLKKNIEKGLEFARKKL 321

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  249 bits (637), Expect = 5e-80
 Identities = 118/321 (36%), Positives = 167/321 (52%), Gaps = 23/321 (7%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KVAV+GA G +G  LA L+ +  L S L L D+     +GVA DLSH   P         
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           +     LKG ++VVI AGVPRKPGMTR DL   NA IVK + +A+A   PDA + +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           V+    IA +     G    + +   T LD  R  TF+A+K  +   DV   V+G H G 
Sbjct: 121 VDILTYIAMKFS---GFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 273 TILPLLSKTMPS--------VSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324
           T++PL S+               T+E++ +L  R++NAG E++EAK GAG      A A 
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAAL 234

Query: 325 ARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYE 383
           AR VE+ LR  D    +   V+++     E  +F     LG+NGVE ++      L++ E
Sbjct: 235 ARMVEAILR--DEKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELL---LSDDE 289

Query: 384 QKALEALKPELKASIEKGVAF 404
           Q+ L+    ELK +IE     
Sbjct: 290 QEKLDKSAEELKKNIELVKEL 310

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  176 bits (448), Expect = 3e-54
 Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 6/145 (4%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGP 152
           KVAV+GA GG+G  LA  + +  L   L L D+     +GVA DLSH +T   V    G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++   ALK  +VVVI AGVPRKPGMTR DL N NA I K +V A+A + PDA + ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFG 237
           V+    IA +V    G+   + +  
Sbjct: 121 VDILTYIAWKVS---GLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  155 bits (393), Expect = 9e-46
 Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 18/179 (10%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG----------ITILPLLSKTMPSVSFT 288
           TTLD  RA TF+A+K  +    V+V V+G H+G          +TI+PL+S+   ++  T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 289 DEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDG--DVYECVF 346
           D E+ +L  R+QNAG EV+EAK  AGS T SMAYAAAR  ++ LR   G     VY   +
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 347 VESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405
             S   +  +F+  V LG++GVE ++  ++  L ++E++ LE    ELK  IEKG AF 
Sbjct: 119 YGSP--DDIYFSVPVVLGKDGVEKVV--EILPLNDFEREKLEKSAAELKKEIEKGFAFV 173

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  156 bits (396), Expect = 2e-44
 Identities = 96/313 (30%), Positives = 158/313 (50%), Gaps = 44/313 (14%)

Query: 96  VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF---- 149
           ++++GA G +G  LA L+ +  L   + L D++    +G A D+S     + +L      
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQA---APILGSDTKV 55

Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
           TG  +    + G +VVVI AG+PRKPGM+RDDL   NA IVK + E +    P+A + ++
Sbjct: 56  TGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +NP++    +A +       +   ++ G+   LD  R   F+A++  + + DV   V+GG
Sbjct: 115 TNPLDVMTYVAYKASG----FPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 269 HAGITILPLLSKTMPSVS-------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
           H G T++PL   +  +V         T EE+ ++  R +N G E+V      GSA  + A
Sbjct: 171 H-GDTMVPLPRYS--TVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPA 226

Query: 322 YAAARFVESSLRALDGDGDVYEC-VFVE-----SNLTELPFFASRVKLGRNGVESLISSD 375
            A A  VE+ L+       V  C  ++E      ++    F    V LG+NGVE +I  D
Sbjct: 227 AAIAEMVEAILK---DKKRVLPCSAYLEGEYGIKDI----FVGVPVVLGKNGVEKIIELD 279

Query: 376 LQGLTEYEQKALE 388
              LT+ E++A +
Sbjct: 280 ---LTDEEKEAFD 289

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  154 bits (392), Expect = 8e-44
 Identities = 102/321 (31%), Positives = 167/321 (52%), Gaps = 58/321 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           K++++GA G +G  LA L+ +  L   + L+D++    +G A D++     + V  F   
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            TG  +    + G +VVVI AGVPRKPGM+RDDL  INA I+K + E +    PDA + +
Sbjct: 59  ITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT-LDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NPV++   +A   LK+ G +   ++ G+   LD  R  TF+A++ N+ + DV   V+G
Sbjct: 118 VTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 268 GHAGITILPLLSKTMPSVS-------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
           GH G +++PL+  +  +V         + E++ ++  R +  G E+V      GSA  + 
Sbjct: 174 GH-GDSMVPLVRYS--TVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAP 229

Query: 321 AYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNG 367
           A + A  VE+ L+           L+G+    DVY  V         P     VKLG+NG
Sbjct: 230 AASIAEMVEAILKDKKRVLPCSAYLEGEYGVKDVYVGV---------P-----VKLGKNG 275

Query: 368 VESLISSDLQGLTEYEQKALE 388
           VE +I  +   L + E+ A +
Sbjct: 276 VEKIIELE---LDDEEKAAFD 293

Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  147 bits (372), Expect = 2e-41
 Identities = 87/312 (27%), Positives = 139/312 (44%), Gaps = 57/312 (18%)

Query: 96  VAVLGAAGGIGQPLALLIKMSPLVSA--LHLYDVMN--VKGVAADLSHCNTPSQVLDFTG 151
           +AV+GA G +G  LA  +    ++ A  L LYD+    +KGVA DL     P   +  + 
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            ++   A K  +VV+I AGV RKPGM R DL   N  IVK + + +    PDA+I ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PV+    I   ++ +      +K+ G+ TLD +R    +A+K  +   DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
            + +P  S                                        +A + A  + S 
Sbjct: 177 -SQVPDWSTV-------------------------------------RIATSIADLIRSL 198

Query: 332 LRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
           L     +G++   V V +N    + +    +    +G+NGVE  I     GLT++E + L
Sbjct: 199 LN---DEGEI-LPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIE---VGLTDFELEKL 251

Query: 388 EALKPELKASIE 399
           +     LK  +E
Sbjct: 252 QKSADTLKKELE 263

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  126 bits (319), Expect = 3e-33
 Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 33/308 (10%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTG 151
           K++++GA G IG  +ALLI    L   + LYDV+    +G A DL H +T     ++  G
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
                  +K  +VVVI AGV RK  MTR+DL  IN  I+K++ E+V   CP+AF+  ++N
Sbjct: 65  TNNY-EDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           P++       +V ++K      K+ G+   LD  R    +A+K  +   DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 271 GITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
           G  ++PL          LS  +   + T++E+ ++  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 321 AYAAARFVESSLRALDGDGDVYEC-VFV--ESNLTELPFFASRVKLGRNGVESLISSDLQ 377
           A A    +E+ L+       V  C V++  + N   L F    V +G  G+E +I  +  
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIELE-- 291

Query: 378 GLTEYEQK 385
            L   E++
Sbjct: 292 -LNAEEKE 298

Length = 319

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  114 bits (286), Expect = 1e-28
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 74/321 (23%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHL-----------------YDVMNVKGVAADL 137
           KV+++GA+G +G   ALL+    +V  ++L                 YD +   G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 138 SHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
              +  S V              G ++V+I AGVPRK GM+R DL   NA IVK   + +
Sbjct: 62  KISSDLSDVA-------------GSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 198 ADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT-LDVVRANTFVAQKKNL 256
           A+  PD  I +++NPV+     A   LK+ G +D  ++FG+ T LD +R    +A+  N+
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 257 KLIDVDVPVVGGHAGITILPLLSKT----MPSVSFT---DEEVGDLTVRIQNAGTEVVEA 309
            + +V   ++G H G +++PL+S T    +P   F    D +V  +   ++NAG  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 310 KAGAGSATLSMAYAAARFVESSLR--------------ALDGDGDVYECVFVESNLTELP 355
           K   G +    A A +  V +                  +DG  DV  C+ V        
Sbjct: 224 K---GGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGIRDV--CIGVP------- 271

Query: 356 FFASRVKLGRNGVESLISSDL 376
                VKLG+NG+E ++  ++
Sbjct: 272 -----VKLGKNGIEEIVPIEM 287

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  112 bits (282), Expect = 4e-28
 Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 44/320 (13%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTG 151
           K++++G+ G IG  +A LI +  L   + L+D++    +G A D+SH N  +       G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPDAFI 206
                  + G +VV++ AG+ ++PG +     RDDL  +NA I+  + E +   CP+AF+
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPV 265
            +I+NP++  V    ++L++       K+ G+   LD  R  T++A+K  +   DV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 266 VGGHAGITILPLLSKT----MPSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
           +G H G  ++PL        +P   F      T EE+ ++  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLGRNGVE 369
           A  + A AA    E+ L+         + V   S   E        +  +   +G NGVE
Sbjct: 239 AYFAPAAAAIEMAEAYLKDK-------KRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVE 291

Query: 370 SLISSDLQGLTEYEQKALEA 389
            +I  D   LT  EQK  + 
Sbjct: 292 KIIELD---LTPEEQKKFDE 308

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  108 bits (271), Expect = 1e-26
 Identities = 84/306 (27%), Positives = 131/306 (42%), Gaps = 28/306 (9%)

Query: 96  VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPE 153
           + ++GA G +G  +A  +    L S L L DV     KG A DLSH +            
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           + A      ++VVI AG PRKPG TR DL N NA I+++++  +    PDA I ++SNPV
Sbjct: 60  DYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           +    I   V ++       ++ G  T LD  R  + +A+K ++    V   V+G H G 
Sbjct: 119 D----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GD 173

Query: 273 TILPLLSKTM-------PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA 325
           + +   S              FT  ++  +   ++ +G E++  K   G+    +A A A
Sbjct: 174 SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAIA 230

Query: 326 RFVESSLRALDGDGDVYEC-VFVESNLTELPFFAS-RVKLGRNGVESLISSDLQGLTEYE 383
             V+S L        V       E          S    +GR GV  ++      LTE E
Sbjct: 231 DIVKSILLDERR---VLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEIP---LTEDE 284

Query: 384 QKALEA 389
           +  L+ 
Sbjct: 285 EAKLQK 290

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  104 bits (260), Expect = 3e-25
 Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 50/326 (15%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLD--FTG 151
           K++V+GA G +G   A  +    L   + L  V  + +G A D+    +P    D   TG
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEA-SPVGGFDTKVTG 60

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
               A      ++VVI AG+PRKPGM+R+DL ++NA IV+ +   + ++ P+  I ++SN
Sbjct: 61  TNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119

Query: 212 PVNSTVPIAAE--------VLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDV 263
           P+++   +A +        V+ Q GV           LD  R  TF+A +  + + DV  
Sbjct: 120 PLDAMTYVAWQKSGFPKERVIGQAGV-----------LDSARFRTFIAMELGVSVQDVTA 168

Query: 264 PVVGGHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
            V+GGH G  ++PL+  +    +P     + E + ++  R +  G E+V      GSA  
Sbjct: 169 CVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYY 226

Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLT-----ELPFFASRVKLGRNGVESLIS 373
           + A +    VE+ L+      D    +   + L      +  +    V LG+NGVE +  
Sbjct: 227 APAASVVEMVEAILK------DRKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYE 280

Query: 374 SDLQGLTEYE----QKALEALKPELK 395
                L + E     K+ + +    K
Sbjct: 281 LK---LDQSELALLNKSAKIVDENCK 303

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 99.8 bits (250), Expect = 9e-24
 Identities = 99/338 (29%), Positives = 146/338 (43%), Gaps = 65/338 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHC--NTPSQVLDF 149
           KV ++GA G +G   A  +    +   L L D+ N    +G A DL       PS V   
Sbjct: 2   KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKIK 59

Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
            G     S  K  ++VVI AG P+KPG TR DL   NA I+K++V  +  +  D    + 
Sbjct: 60  AG---DYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVA 116

Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           SNPV+    I   V K  G     ++ G  T+LD  R    +A+K N+    V   V+G 
Sbjct: 117 SNPVDV---ITYVVQKLSG-LPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGE 172

Query: 269 H-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
           H              G  +L LL         ++ ++ ++   ++ AG E++  K   G+
Sbjct: 173 HGDSQFVAWSTVTVGGKPLLDLL----KEGKLSELDLDEIEEDVRKAGYEIINGK---GA 225

Query: 316 ATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVK 362
               +A A AR V++ L            LDG+    DVY           +P       
Sbjct: 226 TYYGIATALARIVKAILNDENAILPVSAYLDGEYGEKDVY---------IGVP-----AI 271

Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +GRNGVE +I  D   LTE EQ+  E     +K +I+K
Sbjct: 272 IGRNGVEEVIELD---LTEEEQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 97.7 bits (244), Expect = 7e-23
 Identities = 77/310 (24%), Positives = 124/310 (40%), Gaps = 45/310 (14%)

Query: 102 AGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQVLDFTGPEEL 155
           AG +G   A  +    +   + L D+     +G A DL H      TP ++         
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD----- 58

Query: 156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNS 215
            S  K  ++VVI AG P+KPG TR +L   N  I+K++V  V  +  D    + +NPV+ 
Sbjct: 59  YSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD- 117

Query: 216 TVPIAAEV-LKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH---- 269
              I   V  K  G +   ++ G  T LD  R    +A+K  +    V   ++G H    
Sbjct: 118 ---ILTYVAWKLSG-FPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSE 173

Query: 270 ---------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
                     G+ +L  L           EE+        +A  E++  K   G+    +
Sbjct: 174 VPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVR---DAAYEIINRK---GATYYGI 227

Query: 321 AYAAARFVESSLRALDGDGDVYEC-VFVESNLTELPFFASR-VKLGRNGVESLISSDLQG 378
             A AR VE+ L   +    V     +++        +      LGRNGVE +I      
Sbjct: 228 GMAVARIVEAILHDENR---VLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIELP--- 281

Query: 379 LTEYEQKALE 388
           L++ E++A +
Sbjct: 282 LSDEEKEAFQ 291

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 92.3 bits (230), Expect = 7e-21
 Identities = 84/256 (32%), Positives = 116/256 (45%), Gaps = 36/256 (14%)

Query: 95  KVAVLGAAGGIGQPLALLI-------KMSPLVSALHLYDV----MNVKGVAADLSHCNTP 143
            V + GAAG IG  L  LI          P++  LHL D+      ++GV  +L  C  P
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDIPPAMKALEGVVMELQDCAFP 59

Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
               V+  T PEE   A K V+V ++    PRKPGM R DL   NA I K   EA+    
Sbjct: 60  LLKGVVITTDPEE---AFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVA 116

Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
            P   + ++ NP N+    A   LK      PK    +T LD  RA   VA+K  +++ D
Sbjct: 117 KPTVKVLVVGNPANTN---ALIALKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSD 173

Query: 261 V-DVPVVGGHAGITILPLLS--------KTMPSVSFTDEEV--GDLTVRIQNAGTEVVEA 309
           V +V + G H+  T +P LS         T   +   DEE    +    +Q  G  +++ 
Sbjct: 174 VKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK 232

Query: 310 KAGAGSATLSMAYAAA 325
           + GA SA  S A A A
Sbjct: 233 R-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 84/254 (33%), Positives = 118/254 (46%), Gaps = 35/254 (13%)

Query: 95  KVAVLGAAGGIGQPLALLI-------KMSPLVSALHLYDV---MNV-KGVAADLSHCNTP 143
           +VAV GAAG IG  L   I       K  P+V  LHL D+   M   +GVA +L  C  P
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMELEDCAFP 62

Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
             + V+  T PEE   A K V+  ++    PRKPGM R DL + N  I K   +A+    
Sbjct: 63  LLAGVVATTDPEE---AFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVA 119

Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTTLDVVRANTFVAQKKNLKLI 259
             D  + ++ NP N+   IA++         P K F  +T LD  RA   +A K  + + 
Sbjct: 120 KKDVKVLVVGNPANTNALIASKNAPDI----PPKNFSAMTRLDHNRAKYQLAAKAGVPVS 175

Query: 260 DV-DVPVVGGHAGITILPLLS----KTMPSVSFTDEE---VGDLTVRIQNAGTEVVEAKA 311
           DV +V + G H+  T +P  +       P      ++    G+    +Q  G  V+EA+ 
Sbjct: 176 DVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR- 233

Query: 312 GAGSATLSMAYAAA 325
           GA SA  S A AA 
Sbjct: 234 GASSA-ASAANAAI 246

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 84.5 bits (210), Expect = 3e-18
 Identities = 92/334 (27%), Positives = 146/334 (43%), Gaps = 58/334 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KVA++GA G +G   A  + +  L S + L D+     +G A DL+H  TP     F  P
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAH-GTP-----FVKP 54

Query: 153 EEL----ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             +     +  KG +VVVI AG  +KPG TR DL   N  I K ++  +    PDA + +
Sbjct: 55  VRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NPV+    +   V  +     P ++ G  T LD  R    + +   +    V   ++G
Sbjct: 115 VTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIG 170

Query: 268 GHAGITILPLLSKTM------------PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
            H G + + + S                   F +E   ++   ++NA  E++E K   G+
Sbjct: 171 EH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GA 226

Query: 316 ATLSMAYAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGR 365
              ++  A AR VE+ LR           LDG   + +          LP       +GR
Sbjct: 227 TYYAIGLALARIVEAILRDENSVLTVSSLLDGQYGIKDVAL------SLP-----CIVGR 275

Query: 366 NGVESLISSDLQGLTEYEQKALEALKPELKASIE 399
           +GVE ++      L+E E++AL A    LK +IE
Sbjct: 276 SGVERVLPPP---LSEEEEEALRASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 69/264 (26%), Positives = 115/264 (43%), Gaps = 47/264 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           KV ++G  G +G   A  +    +   L + D+   K  G A DLSH       + FT P
Sbjct: 8   KVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHA------VPFTSP 60

Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            ++ +      K  ++VVI AG P+KPG TR DL   N  I K++V  V  +  D    +
Sbjct: 61  TKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLV 120

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV---------TTLDVVRANTFVAQKKNLKLI 259
            SNPV        ++L     Y   KL G          T+LD  R    +++K ++   
Sbjct: 121 ASNPV--------DIL----TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPR 168

Query: 260 DVDVPVVGGH----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEA 309
            V   ++G H          A +  +PL      +  + +E++ ++   +++A  E++E 
Sbjct: 169 SVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK 228

Query: 310 KAGAGSATLSMAYAAARFVESSLR 333
           K   G+    +A A AR  ++ L 
Sbjct: 229 K---GATYYGIAMALARITKAILN 249

Length = 315

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 49/261 (18%)

Query: 95  KVAVLGAAGGIGQPL-------ALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTP 143
           +VAV GAAG IG  L        +     P+   L L ++      ++GVA +L  C  P
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPV--ILQLLELPQALKALEGVAMELEDCAFP 61

Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
             ++++    P     A K  +  ++    PR PGM R DL   N  I     +A+ D  
Sbjct: 62  LLAEIVITDDPNV---AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             D  + ++ NP N+   IA    K      P     +T LD  RA + +A+K  + + D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 261 V-DVPVVGGHAGITILPLLSKTM-PSVSFT------------DEE--VGDLTVRIQNAGT 304
           V ++ + G H         S T  P  +              D      +    +Q  G 
Sbjct: 176 VKNMVIWGNH---------SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGA 226

Query: 305 EVVEAKAGAGSATLSMAYAAA 325
            +++A+ GA SA  S A AA 
Sbjct: 227 AIIKAR-GASSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 73/254 (28%), Positives = 108/254 (42%), Gaps = 33/254 (12%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVMNVK----GVAADLSHCNTPSQ 145
           +V V GAAG IG  L  +I    ++       LHL D+        GV  +L  C  P  
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFP-- 58

Query: 146 VLDFTGP-EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PD 203
           +LD   P  + A A   V+V ++    PRK GM R DL + N  I K    A+      D
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTTLDVVRANTFVAQKKNLKLIDV- 261
             + ++ NP N+     A VL       P K F  +T LD  RA   VA++  + + DV 
Sbjct: 119 CKVLVVGNPANTN----ALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVK 174

Query: 262 DVPVVGGHAGITILPLLSKTMPSVSFTDEEV-----------GDLTVRIQNAGTEVVEAK 310
           +V + G H+  T  P ++    +     + V           G+    +Q  G  ++ A+
Sbjct: 175 NVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR 233

Query: 311 AGAGSATLSMAYAA 324
               S+ LS A AA
Sbjct: 234 --KLSSALSAAKAA 245

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 76/259 (29%), Positives = 114/259 (44%), Gaps = 43/259 (16%)

Query: 95  KVAVLGAAGGIGQPLALLI-------KMSPLVSALHLYDV---MNV-KGVAADLSHCNTP 143
           +V V GAAG I   L  +I          P++  LHL D+   +   +GV  +L  C  P
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDIPPALKALEGVVMELQDCAFP 61

Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEA---VA 198
               V+  T PEE   A K V+V ++   +PRK GM R DL   N  I K   EA    A
Sbjct: 62  LLKSVVATTDPEE---AFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYA 118

Query: 199 DNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTTLDVVRANTFVAQKKNLK 257
               +  + ++ NP N+   I  +      +  PK+ F  +T LD  RA + +A K  + 
Sbjct: 119 K--KNVKVLVVGNPANTNALILLK--YAPSI--PKENFTALTRLDHNRAKSQIALKLGVP 172

Query: 258 LIDV-DVPVVGGHAGITILP--------LLSKTMPSVSFTDEEV---GDLTVRIQNAGTE 305
           + DV +V + G H+  T  P        L  K  P+     ++    G+    +Q  G  
Sbjct: 173 VSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231

Query: 306 VVEAKAGAGSATLSMAYAA 324
           V++A+    SA +S A A 
Sbjct: 232 VIKAR-KLSSA-MSAAKAI 248

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 67.9 bits (167), Expect = 1e-12
 Identities = 70/266 (26%), Positives = 105/266 (39%), Gaps = 61/266 (22%)

Query: 95  KVAVLGAAGGIG----------------QPLAL-LIKMSPLVSALHLYDVMNVKGVAADL 137
           +VAV GAAG IG                QP+ L L+++ P + AL        +GV  +L
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKAL--------EGVVMEL 57

Query: 138 SHCNTP--SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVE 195
             C  P  + V+    P     A K  +V ++    PR PGM R DL   N  I     +
Sbjct: 58  DDCAFPLLAGVVITDDPNV---AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGK 114

Query: 196 AVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKK 254
           A+ +    D  + ++ NP N+   IA +      +   +    +T LD  RA + +A K 
Sbjct: 115 ALNEVAARDVKVLVVGNPANTNALIAMK--NAPDL-PAENFTAMTRLDHNRALSQLAAKA 171

Query: 255 NLKLIDV-DVPVVGGHAGITILPLLSKTM-PSVSFT------------DEE--VGDLTVR 298
            + + D+  + V G H         S T  P                 D+          
Sbjct: 172 GVPVADIKKMTVWGNH---------SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPT 222

Query: 299 IQNAGTEVVEAKAGAGSATLSMAYAA 324
           +Q  G  ++EA+ GA SA  S A AA
Sbjct: 223 VQKRGAAIIEAR-GASSAA-SAANAA 246

Length = 326

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 80/333 (24%), Positives = 133/333 (39%), Gaps = 70/333 (21%)

Query: 93  SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQV 146
             KV V+G  G +G   A+ I    L   L L DV+   +KG A DL H       P   
Sbjct: 3   RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE 61

Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
            D        S      VV++ AG  +  G +R DL   N +I K ++  +    P+A +
Sbjct: 62  ADKDY-----SVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 207 HIISNPVNSTVPIAAEVL-----KQKGVYDPK-KLFGV-TTLDVVRANTFVAQKKNLKLI 259
            ++SNPV        +++     K  G+  PK ++ G    LD  R    +A++  +   
Sbjct: 117 LVVSNPV--------DIMTYVAWKLSGL--PKHRVIGSGCNLDSARFRYLIAERLGVAPS 166

Query: 260 DVDVPVVGGH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEV 306
            V   ++G H             AG+ +  L            E+  ++  ++ ++  EV
Sbjct: 167 SVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPD--IGTDKDPEKWKEVHKQVVDSAYEV 224

Query: 307 VEAKAGAGSATLSMAYAAARFVESSLRAL----------DGDGDVYECVFVESNLTELPF 356
           ++ K   G  + ++  + A  V++ LR             G   + + VF+      LP 
Sbjct: 225 IKLK---GYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFL-----SLP- 275

Query: 357 FASRVKLGRNGVESLISSDLQGLTEYEQKALEA 389
                 LG NG+  +I    Q LTE EQ+ L+ 
Sbjct: 276 ----CILGENGITHVIK---QPLTEEEQEKLQK 301

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 33/241 (13%)

Query: 100 GAAGGIGQPLAL-LIKMSPLVSALHLYDVMNVKGVAADLSHCNTP--SQVLDFTGPEELA 156
           G   G  QP+ L ++ + P   AL         GV  +L     P    V+  T   E  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEAL--------NGVKMELIDAAFPLLKGVVATTDVVE-- 54

Query: 157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNS 215
            A KGVN+ V+  G PRK GM R D+ + N +I K+   A+  +  PD  + +++NP N+
Sbjct: 55  -ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 216 TVPIAAEVLKQKGVYDPKK-LFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
                A +LK+     P+K +  +T LD  RA   ++++  + + DV   ++ G+   T 
Sbjct: 114 N----ALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQ 169

Query: 275 LPLLSKTMPSVSFTDEEV-----------GDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
            P ++         ++ V           G+    +Q  G  +++A+    S+ LS A +
Sbjct: 170 YPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASS 227

Query: 324 A 324
           A
Sbjct: 228 A 228

Length = 309

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 29/309 (9%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGP 152
           KV+V+G  G +G  +A  I    L   L L DV    ++G   DL H             
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS 97

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
            +  +   G ++ ++ AG  + PG +R +L   N  + + ++  +A   PD  + I+SNP
Sbjct: 98  TDY-AVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--- 269
           V+    +A    K  G    + +   T LD  R    +A   ++   DV   +VG H   
Sbjct: 157 VDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDS 213

Query: 270 ----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
                      G+ +L  L K    +++  E + ++   + ++  EV++ K   G  + +
Sbjct: 214 SVALWSSVSVGGVPVLSFLEKQ--QIAYEKETLEEIHRAVVDSAYEVIKLK---GYTSWA 268

Query: 320 MAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS-RVKLGRNGVESLISSDLQG 378
           + Y+ A  V S LR       V         + E   F S   +LGRNGV  +++     
Sbjct: 269 IGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVH--- 325

Query: 379 LTEYEQKAL 387
           LT+ E + L
Sbjct: 326 LTDEEAERL 334

Length = 350

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 122 LHLYDV---MN-VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIPAGVPRKP 175
           LHL ++   +N ++ +A +L  C  P  +  +  T  EE   A K ++   + A VP KP
Sbjct: 18  LHLLEIPPALNRLEALAMELEDCAFPNLAGTIVTTKLEE---AFKDIDCAFLVASVPLKP 74

Query: 176 GMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK 234
           G  R DL   N  I K   EA+++   P   + +I NPVN+   +A  +L    +   + 
Sbjct: 75  GEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVA--MLHAPKL-SAEN 131

Query: 235 LFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGD 294
              +  LD  RA + +A K  + +  +   VV G+   +++  L+    + +   ++V D
Sbjct: 132 FSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFD 191

Query: 295 LTVRIQNAGT 304
              R      
Sbjct: 192 ELCRDYPEPD 201

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 62/251 (24%), Positives = 96/251 (38%), Gaps = 31/251 (12%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+ V+GA G +G  +        L S + L DV      G A D  H    +   +    
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR 59

Query: 153 EELASALKGVNVVVIPAGVPRKPGMT--RDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
                     +++VI AG    PG T  R DL   NA I++ ++  +     +A I +I+
Sbjct: 60  AGDYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NP++  V IAA     +  Y   K+ G  T LD  R    VA K  +   +V   V+G H
Sbjct: 120 NPLDIAVYIAA----TEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH 175

Query: 270 AGITILPLLSKT----MPSVSFTD---------EEVGDLTVRIQNAGTEVVEAK----AG 312
            G    P+ S      +P               +E+ +    +  A  +V   K    AG
Sbjct: 176 -GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLE---EVVQAAYDVFNRKGWTNAG 231

Query: 313 AGSATLSMAYA 323
              +   +  A
Sbjct: 232 IAKSASRLIKA 242

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 52/182 (28%), Positives = 69/182 (37%), Gaps = 40/182 (21%)

Query: 95  KVAVLGAAGGIG----------------QPLAL-LIKMSPLVSALHLYDVMNVKGVAADL 137
            VAV GAAG I                 QP+AL L+       AL        +GVA +L
Sbjct: 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQAL--------EGVAMEL 153

Query: 138 SHCNTP--SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV----K 191
                P   +V     P E+    +     ++    PR PGM R DL +IN  I     K
Sbjct: 154 EDSLYPLLREVSIGIDPYEV---FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGK 210

Query: 192 TLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA 251
            L E  + N     + ++ NP N+   I    LK       K    +T LD  RA   +A
Sbjct: 211 ALNEVASRNVK---VIVVGNPCNTNALIC---LKNAPNIPAKNFHALTRLDENRAKCQLA 264

Query: 252 QK 253
            K
Sbjct: 265 LK 266

Length = 444

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 97  AVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-DFTGPEE 154
            V G  G +G+ +  LL++   L   + ++D+     +  D S     + +  D T  ++
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGEL-QEVRVFDLRFSPELLEDFSKLQVITYIEGDVTDKQD 59

Query: 155 LASALKGVNVVVIPAGVPRKPGM-TRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           L  AL+G +VV+  A +    G   RD +  +N    + +++A         ++  S  V
Sbjct: 60  LRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSMEV 119

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 96  VAVLGAAGGIGQPLAL-LIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS--QVLDFTGP 152
           + +LGA G IG+ LA  L++    V+ L       V+           P      D    
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLL-------VRNTKRLSKEDQEPVAVVEGDLRDL 53

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           + L+ A++GV+VV+  AG PR      +     +    + ++EA  +     FI I
Sbjct: 54  DSLSDAVQGVDVVIHLAGAPRDTRDFCEV----DVEGTRNVLEAAKEAGVKHFIFI 105

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           ++ V G AG IG  L        L++A H    ++      D         VLD T  + 
Sbjct: 2   RILVTGGAGFIGSHLVER-----LLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDL 56

Query: 155 LASALKGVNVVVI----PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           +    KGV   VI     + VP        +  ++N +    L+EA        F+   S
Sbjct: 57  VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116

Query: 211 NPV 213
             V
Sbjct: 117 VSV 119

Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PLN02602	350	lactate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.97
PRK15076	431	alpha-galactosidase; Provisional	99.96
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.94
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.94
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.92
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.88
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.74
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.74
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.73
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.67
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.66
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.65
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.63
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.56
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.43
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.43
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.41
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.35
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.25
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.15
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.15
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.14
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.11
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.1
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.95
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.92
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.91
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.84
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.72
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.58
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.54
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.51
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.47
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.37
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.28
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.25
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.23
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.11
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.09
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.08
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.02
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.0
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.99
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.95
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.94
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.92
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.92
PLN02427	386	UDP-apiose/xylose synthase	97.91
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.9
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.9
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.89
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	97.88
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.87
PLN03209	576	translocon at the inner envelope of chloroplast su	97.87
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.85
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.82
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.78
PRK07417	279	arogenate dehydrogenase; Reviewed	97.74
PRK08655	437	prephenate dehydrogenase; Provisional	97.72
PLN02688	266	pyrroline-5-carboxylate reductase	97.7
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.7
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.69
PRK12480	330	D-lactate dehydrogenase; Provisional	97.68
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.68
PLN02166	436	dTDP-glucose 4,6-dehydratase	97.68
PLN00198	338	anthocyanidin reductase; Provisional	97.62
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	97.61
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.61
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.6
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.59
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.58
CHL00194	317	ycf39 Ycf39; Provisional	97.56
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.56
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	97.55
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.53
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.53
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.53
PRK06545	359	prephenate dehydrogenase; Validated	97.52
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.52
PRK07680	273	late competence protein ComER; Validated	97.51
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.49
PLN02214	342	cinnamoyl-CoA reductase	97.49
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.48
PLN02650	351	dihydroflavonol-4-reductase	97.45
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.43
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	97.43
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.42
PLN02256	304	arogenate dehydrogenase	97.42
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.41
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.4
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.39
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.39
PLN02206	442	UDP-glucuronate decarboxylase	97.38
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.34
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.28
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.27
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.27
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.26
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.24
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.23
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.23
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.22
PLN02583	297	cinnamoyl-CoA reductase	97.2
PLN02695	370	GDP-D-mannose-3',5'-epimerase	97.19
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.18
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.17
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.16
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.16
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.16
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	97.15
PLN02572	442	UDP-sulfoquinovose synthase	97.13
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.12
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.11
PLN02778	298	3,5-epimerase/4-reductase	97.09
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.08
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.03
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	97.03
PRK08507	275	prephenate dehydrogenase; Validated	97.03
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.02
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.02
PLN02712	667	arogenate dehydrogenase	97.01
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.97
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.97
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	96.95
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.94
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.93
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	96.91
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.91
PRK08818	370	prephenate dehydrogenase; Provisional	96.9
PRK08267	260	short chain dehydrogenase; Provisional	96.87
PRK06194	287	hypothetical protein; Provisional	96.87
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.86
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.85
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.85
PLN02653	340	GDP-mannose 4,6-dehydratase	96.81
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.81
PLN02712	667	arogenate dehydrogenase	96.81
COG2910	211	Putative NADH-flavin reductase [General function p	96.78
PRK13243	333	glyoxylate reductase; Reviewed	96.78
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.78
PLN02240	352	UDP-glucose 4-epimerase	96.77
PRK07806	248	short chain dehydrogenase; Provisional	96.76
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.72
PRK08605	332	D-lactate dehydrogenase; Validated	96.72
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.72
PLN02928	347	oxidoreductase family protein	96.72
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.7
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	96.66
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.66
PLN00016	378	RNA-binding protein; Provisional	96.66
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.64
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.63
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.63
PRK06436	303	glycerate dehydrogenase; Provisional	96.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.57
PLN02686	367	cinnamoyl-CoA reductase	96.55
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.54
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.53
PRK07574	385	formate dehydrogenase; Provisional	96.53
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.52
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.51
PRK12367	245	short chain dehydrogenase; Provisional	96.51
PRK05865	854	hypothetical protein; Provisional	96.5
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.5
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.49
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.49
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.47
PRK07326	237	short chain dehydrogenase; Provisional	96.46
PRK06182	273	short chain dehydrogenase; Validated	96.45
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.45
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.43
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.43
PRK12828	239	short chain dehydrogenase; Provisional	96.42
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.41
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.41
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.4
PRK10538	248	malonic semialdehyde reductase; Provisional	96.39
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.39
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.39
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.37
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.37
PRK07102	243	short chain dehydrogenase; Provisional	96.36
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.35
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.34
PLN02260	668	probable rhamnose biosynthetic enzyme	96.32
PRK07201	657	short chain dehydrogenase; Provisional	96.31
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.3
PRK12829	264	short chain dehydrogenase; Provisional	96.3
PLN02253	280	xanthoxin dehydrogenase	96.28
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.27
PRK08643	256	acetoin reductase; Validated	96.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.26
PLN03139	386	formate dehydrogenase; Provisional	96.26
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.25
PRK05717	255	oxidoreductase; Validated	96.25
PRK07024	257	short chain dehydrogenase; Provisional	96.25
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	96.24
PRK12320	699	hypothetical protein; Provisional	96.22
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.21
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.2
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.18
PRK06180	277	short chain dehydrogenase; Provisional	96.18
PRK05884	223	short chain dehydrogenase; Provisional	96.15
PRK06196	315	oxidoreductase; Provisional	96.14
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.12
PRK07069	251	short chain dehydrogenase; Validated	96.12
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.12
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.12
PRK06101	240	short chain dehydrogenase; Provisional	96.08
PRK06482	276	short chain dehydrogenase; Provisional	96.07
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.06
PRK07774	250	short chain dehydrogenase; Provisional	96.06
PRK12937	245	short chain dehydrogenase; Provisional	96.05
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.04
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	96.04
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.03
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.03
PRK08265	261	short chain dehydrogenase; Provisional	96.01
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.01
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.0
PRK07890	258	short chain dehydrogenase; Provisional	96.0
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	96.0
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.0
PRK07856	252	short chain dehydrogenase; Provisional	96.0
PRK06128	300	oxidoreductase; Provisional	95.99
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.99
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.98
PRK12939	250	short chain dehydrogenase; Provisional	95.98
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.97
PRK07067	257	sorbitol dehydrogenase; Provisional	95.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.97
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	95.96
PRK08263	275	short chain dehydrogenase; Provisional	95.94
PRK06181	263	short chain dehydrogenase; Provisional	95.93
PRK05993	277	short chain dehydrogenase; Provisional	95.92
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.91
PRK05650	270	short chain dehydrogenase; Provisional	95.9
PRK06841	255	short chain dehydrogenase; Provisional	95.89
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.89
PRK07814	263	short chain dehydrogenase; Provisional	95.89
PRK14982	340	acyl-ACP reductase; Provisional	95.88
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.87
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.85
PRK06924	251	short chain dehydrogenase; Provisional	95.85
PRK07074	257	short chain dehydrogenase; Provisional	95.84
PRK08219	227	short chain dehydrogenase; Provisional	95.82
PRK05875	276	short chain dehydrogenase; Provisional	95.82
PRK07454	241	short chain dehydrogenase; Provisional	95.82
PRK08339	263	short chain dehydrogenase; Provisional	95.8
PRK05876	275	short chain dehydrogenase; Provisional	95.78
PRK06179	270	short chain dehydrogenase; Provisional	95.78
PRK06057	255	short chain dehydrogenase; Provisional	95.78
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.76
PRK06940	275	short chain dehydrogenase; Provisional	95.75
PRK06172	253	short chain dehydrogenase; Provisional	95.75
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.74
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	95.74
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.73
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.73
PRK07904	253	short chain dehydrogenase; Provisional	95.71
PRK06197	306	short chain dehydrogenase; Provisional	95.7
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.69
PRK05866	293	short chain dehydrogenase; Provisional	95.69
PRK08223	287	hypothetical protein; Validated	95.69
PRK09135	249	pteridine reductase; Provisional	95.69
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.67
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.67
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.67
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.67
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.65
PRK05867	253	short chain dehydrogenase; Provisional	95.64
PRK07478	254	short chain dehydrogenase; Provisional	95.64
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.64
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.64
PRK08251	248	short chain dehydrogenase; Provisional	95.62
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.62
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.6
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.59
PRK09291	257	short chain dehydrogenase; Provisional	95.59
PLN02780	320	ketoreductase/ oxidoreductase	95.59
PRK06523	260	short chain dehydrogenase; Provisional	95.58
PRK08291	330	ectoine utilization protein EutC; Validated	95.57
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.56
PRK07060	245	short chain dehydrogenase; Provisional	95.56
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.55
PRK07677	252	short chain dehydrogenase; Provisional	95.55
PRK07063	260	short chain dehydrogenase; Provisional	95.55
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.55
PRK06914	280	short chain dehydrogenase; Provisional	95.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.54
PRK07877	722	hypothetical protein; Provisional	95.53
PRK06500	249	short chain dehydrogenase; Provisional	95.52
PRK06138	252	short chain dehydrogenase; Provisional	95.52
PRK12742	237	oxidoreductase; Provisional	95.52
PRK09186	256	flagellin modification protein A; Provisional	95.51
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.51
PRK12746	254	short chain dehydrogenase; Provisional	95.51
PRK07825	273	short chain dehydrogenase; Provisional	95.51
PRK07340	304	ornithine cyclodeaminase; Validated	95.51
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.51
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.51
PRK12827	249	short chain dehydrogenase; Provisional	95.51
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.5
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.5
PLN02858	1378	fructose-bisphosphate aldolase	95.49
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.49
PRK05693	274	short chain dehydrogenase; Provisional	95.47
PRK07576	264	short chain dehydrogenase; Provisional	95.47
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.47
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.46
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.44
PRK06444	197	prephenate dehydrogenase; Provisional	95.44
PRK06141	314	ornithine cyclodeaminase; Validated	95.43
PRK06153	393	hypothetical protein; Provisional	95.43
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.43
PRK07832	272	short chain dehydrogenase; Provisional	95.42
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.42
PRK08324	681	short chain dehydrogenase; Validated	95.4
PRK08589	272	short chain dehydrogenase; Validated	95.4
PRK09496	453	trkA potassium transporter peripheral membrane com	95.39
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.39
PRK06198	260	short chain dehydrogenase; Provisional	95.38
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.38
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	95.37
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.36
PRK06398	258	aldose dehydrogenase; Validated	95.35
PRK08328	231	hypothetical protein; Provisional	95.34
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.34
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.34
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.33
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.32
PRK08618	325	ornithine cyclodeaminase; Validated	95.32
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.32
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.32
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.31
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.3
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.3
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.29
PRK08177	225	short chain dehydrogenase; Provisional	95.28
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.27
PRK06139	330	short chain dehydrogenase; Provisional	95.26
PRK08628	258	short chain dehydrogenase; Provisional	95.25
PRK06701	290	short chain dehydrogenase; Provisional	95.25
PRK07109	334	short chain dehydrogenase; Provisional	95.23
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.23
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.22
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PRK07411	390	hypothetical protein; Validated	95.22
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.22
PRK05872	296	short chain dehydrogenase; Provisional	95.21
PRK09072	263	short chain dehydrogenase; Provisional	95.21
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.17
PRK09242	257	tropinone reductase; Provisional	95.17
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.16
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.15
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.15
PRK08278	273	short chain dehydrogenase; Provisional	95.12
PLN02306	386	hydroxypyruvate reductase	95.12
PRK05855	582	short chain dehydrogenase; Validated	95.12
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.1
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.1
TIGR01746	367	Thioester-redct thioester reductase domain. It has	95.1
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.09
PRK08226	263	short chain dehydrogenase; Provisional	95.09
PLN02858	1378	fructose-bisphosphate aldolase	95.09
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.09
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.08
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.06
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.06
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.04
PRK07062	265	short chain dehydrogenase; Provisional	95.03
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.03
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.02
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.02
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.01
PRK09134	258	short chain dehydrogenase; Provisional	95.0
PRK06949	258	short chain dehydrogenase; Provisional	94.98
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.97
PRK06953	222	short chain dehydrogenase; Provisional	94.95
PRK07577	234	short chain dehydrogenase; Provisional	94.93
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.93
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.93
PRK08264	238	short chain dehydrogenase; Validated	94.92
PRK12935	247	acetoacetyl-CoA reductase; Provisional	94.91
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	94.91
PRK06114	254	short chain dehydrogenase; Provisional	94.91
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.91
PRK07035	252	short chain dehydrogenase; Provisional	94.89
PRK07578	199	short chain dehydrogenase; Provisional	94.88
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.88
PRK12747	252	short chain dehydrogenase; Provisional	94.86
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.83
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.82
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.82
PRK05854	313	short chain dehydrogenase; Provisional	94.82
PRK12743	256	oxidoreductase; Provisional	94.82
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.81
PRK06407	301	ornithine cyclodeaminase; Provisional	94.81
PLN02494	477	adenosylhomocysteinase	94.81
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.81
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.79
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.78
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.76
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.73
PRK06823	315	ornithine cyclodeaminase; Validated	94.72
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.71
PRK07023	243	short chain dehydrogenase; Provisional	94.7
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.7
PRK06487	317	glycerate dehydrogenase; Provisional	94.69
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.68
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.64
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.64
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.63
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.62
PRK08703	239	short chain dehydrogenase; Provisional	94.61
PRK07831	262	short chain dehydrogenase; Provisional	94.6
PRK12824	245	acetoacetyl-CoA reductase; Provisional	94.6
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	94.59
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.58
PRK07985	294	oxidoreductase; Provisional	94.57
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.56
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.56
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.56
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	94.55
PRK06483	236	dihydromonapterin reductase; Provisional	94.55
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	94.53
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.52
PRK06932	314	glycerate dehydrogenase; Provisional	94.51
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.51
PRK14851	679	hypothetical protein; Provisional	94.49
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.44
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	94.44
PRK14852	989	hypothetical protein; Provisional	94.42
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.41
PLN02260	668	probable rhamnose biosynthetic enzyme	94.38
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.37
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.35
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.34
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.34
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.33
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.33
PRK07589	346	ornithine cyclodeaminase; Validated	94.33
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.32
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.31
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.31
PLN02383	344	aspartate semialdehyde dehydrogenase	94.31
PLN00203	519	glutamyl-tRNA reductase	94.29
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.29
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.27
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.26
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.24
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.22
PRK12744	257	short chain dehydrogenase; Provisional	94.2
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	94.18
PRK13529	563	malate dehydrogenase; Provisional	94.18
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	94.17
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	94.16
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.16

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.8e-70  Score=515.83  Aligned_cols=318  Identities=70%  Similarity=1.055  Sum_probs=307.6

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+..||+|+||+|.+|+.++++|.++++++++.|||+....|.+.||+|..+...+..++|..++++++++||+|||.|
T Consensus        25 ~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA  104 (345)
T KOG1494|consen   25 SQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA  104 (345)
T ss_pred             ccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence            35578999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTF  249 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~  249 (412)
                      |+||||||+|+||+..|+.|+++++..+.++||+|.+.++|||+|+++||+.+++++.+.|+|+|++|+|+||..|.++|
T Consensus       105 GVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tF  184 (345)
T KOG1494|consen  105 GVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTF  184 (345)
T ss_pred             CCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCC-CCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHH
Q 015172          250 VAQKKNLKL-IDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFV  328 (412)
Q Consensus       250 la~~l~v~~-~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii  328 (412)
                      +++.++++| ++++++|||+|.|.|++|++|+..|..++++++++.|+.|+|++|.||+++|.|+||+++|||||.++|+
T Consensus       185 v~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa  264 (345)
T KOG1494|consen  185 VAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFA  264 (345)
T ss_pred             HHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHH
Confidence            999999999 5599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172          329 ESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ  408 (412)
Q Consensus       329 ~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~  408 (412)
                      .+.+++++|++.+..|+||.+.+.+.+||++|++||++||+++..  +.+|+++|++.|+.+.++|++.|++|++|+++.
T Consensus       265 ~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~--l~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~~~  342 (345)
T KOG1494|consen  265 DSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLG--LGKLSDYEEKALEAAKPELKKSIEKGVTFVKST  342 (345)
T ss_pred             HHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecC--CCccCHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            999999999999999999999877889999999999999999999  689999999999999999999999999998865


Q ss_pred             h
Q 015172          409 A  409 (412)
Q Consensus       409 ~  409 (412)
                      -
T Consensus       343 ~  343 (345)
T KOG1494|consen  343 S  343 (345)
T ss_pred             c
Confidence            4

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1.2e-67  Score=521.79  Aligned_cols=309  Identities=68%  Similarity=1.037  Sum_probs=279.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+||||+|.||+++|+.++.+++++||+|+|++.++|+++||.|+.....+....+++|+.++++|||+||+++|.||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999999778999999999743333322233344458999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHH
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQK  253 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~  253 (412)
                      +|||+|+|++..|.++++++++.|.+++|++|+|++|||+|+|++|+++++++.+++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             cCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHh
Q 015172          254 KNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR  333 (412)
Q Consensus       254 l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~  333 (412)
                      +|+++++|+++|+|||+|+++||+||++.|..+++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++|++
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~  240 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR  240 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence            99999999999999995589999999999877776667899999999999999998656689999999999999999998


Q ss_pred             ccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172          334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQ-GLTEYEQKALEALKPELKASIEKGVAFA  405 (412)
Q Consensus       334 ~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~-~Lse~E~~~L~~sa~~L~~~i~~~~~~~  405 (412)
                      |+.+++.+++|+++.++-.+++|||+||+||++|++++++   + +|+++|+++|++|++.|++.+++|+.|+
T Consensus       241 ~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~---l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLG---LGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             hcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeC---CCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            8766677899997765423567999999999999999999   6 6999999999999999999999998873

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.1e-67  Score=518.75  Aligned_cols=309  Identities=63%  Similarity=0.962  Sum_probs=279.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k  174 (412)
                      ||+||||+|.||+++|+.|+.+++++||+|+|++++.|+++||.|......+..+++.+|+.++++|||+||+++|.||+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999998889999999976432232212222333489999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHHc
Q 015172          175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKK  254 (412)
Q Consensus       175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l  254 (412)
                      ||++|+|++..|.+++++++++|.+++|++++|++|||+|+++||+++++++.+|+||+||||+|.|||+||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhc
Q 015172          255 NLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA  334 (412)
Q Consensus       255 ~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~  334 (412)
                      ++++++|+++||||||+++++|+||++.....++++++++|.++++++|++|+++|.|+|+|+||+|+++++++++|+.+
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999986799999999875433666679999999999999999986556899999999999999999986


Q ss_pred             cCCCCCeEEeeeecCCC-CCCCceeeeEEEcCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015172          335 LDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ-GLTEYEQKALEALKPELKASIEKGVAFAQ  406 (412)
Q Consensus       335 ~~g~~~v~~~s~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~-~Lse~E~~~L~~sa~~L~~~i~~~~~~~~  406 (412)
                      +.+++.++||++++++| .+++|||+||+||++||+++++   + +|+++|+++|++|++.|++.+++|++|++
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLG---IGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55567899999887665 4678999999999999999999   6 89999999999999999999999999986

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=7.6e-66  Score=505.09  Aligned_cols=297  Identities=40%  Similarity=0.604  Sum_probs=268.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee-eecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL-DFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~-~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +||+|||| |.||+++|+.|+.+++.+|++|+|+++  ++|.++||.|+.+..... .+.++.||+ +++|||+||++||
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~-~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYE-DLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChh-hhcCCCEEEEeCC
Confidence            59999999 999999999998888888999999996  799999999997653222 333435686 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .||||||+|+||+..|++|+++++++|.+++||++++|+|||+|    ++++++++.+|+|++||||+ |.||++||+++
T Consensus        79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~  154 (313)
T COG0039          79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTF  154 (313)
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67888999999999999999 89999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC----ChHHHHHHHHHHhhccchhhhcccCCCchhhhHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF----TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA  321 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~----~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A  321 (412)
                      ||+++++++++|+++|+|+|| +++||+||+++    |..++    ++++++++.+++|++|++|+++| |.| |+||+|
T Consensus       155 lae~~~v~~~~V~~~ViGeHG-dt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A  231 (313)
T COG0039         155 LAEKLGVSPKDVHAYVIGEHG-DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPA  231 (313)
T ss_pred             HHHHhCCChhHceeeEeccCC-CceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHH
Confidence            999999999999999999885 79999999986    55443    33567899999999999999999 545 999999


Q ss_pred             HHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172          322 YAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE  399 (412)
Q Consensus       322 ~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~  399 (412)
                      .++++++++|++|   +++++|++ |++++| .++.||++|+++|++|++++++   ++|+++|+++|++|+++|++.++
T Consensus       232 ~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie---~~l~~~E~~~l~~s~~~lk~~i~  305 (313)
T COG0039         232 AALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILE---LLLSDDEQEKLDKSAEELKKNIE  305 (313)
T ss_pred             HHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEec---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   46899987 566666 6778999999999999999999   78999999999999999999999


Q ss_pred             HHHHHH
Q 015172          400 KGVAFA  405 (412)
Q Consensus       400 ~~~~~~  405 (412)
                      .+..++
T Consensus       306 ~~~~~~  311 (313)
T COG0039         306 LVKELV  311 (313)
T ss_pred             HHHHhh
Confidence            887764

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=2.2e-64  Score=501.12  Aligned_cols=305  Identities=76%  Similarity=1.145  Sum_probs=281.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ..||+||||+|.||+.+++.|+++++++||+|+|+++++++++||.|+.....+..+++++|+.++++|||+||+++|.|
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            36999999889999999999999999999999999988899999999876555555556677777999999999999999


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHH
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQ  252 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~  252 (412)
                      ++||++|+|++..|.++++++++.+.+++|+++++++|||+|.+.|++++++++.+++||+||||++.||++||++++|+
T Consensus        98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~  177 (323)
T PLN00106         98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAE  177 (323)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHH
Q 015172          253 KKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL  332 (412)
Q Consensus       253 ~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail  332 (412)
                      ++|+++.+|+++|+|||||+++||+||++.|..+++++++++|.++++++|++|++.|.|+|+|+||+|.++++|+++|+
T Consensus       178 ~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail  257 (323)
T PLN00106        178 KKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACL  257 (323)
T ss_pred             HhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999888999999999887667777799999999999999999864558999999999999999999


Q ss_pred             hccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172          333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE  399 (412)
Q Consensus       333 ~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~  399 (412)
                      .++++++.++|||++++++.+.+|||+||+||++|++++++  +++|+++|+++|++|++.|++.++
T Consensus       258 ~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        258 RGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLG--LGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             hccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHhh
Confidence            98766778999998877664448999999999999999999  238999999999999999998775

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=8.1e-62  Score=482.44  Aligned_cols=313  Identities=60%  Similarity=0.933  Sum_probs=275.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCc-HHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al~~aDiVIiaa  169 (412)
                      -+++||+||||||.||+.+++.++..+++++|+|+|++.++++++||.|......+...+...+ |+ +++|||+||+++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~-~l~gaDvVVita   84 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEK-ALRGADLVLICA   84 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHH-HhCCCCEEEECC
Confidence            3577999999889999999999999999999999999668899999999765333332322134 54 899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTF  249 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~  249 (412)
                      |.|++|+++|.|++..|+++++++++.+.+++|+++++++|||+|.+++++.+.+++.+++||+||||++.|||+||+++
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~  164 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF  164 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999965555332335889999999999977999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVE  329 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~  329 (412)
                      ||+++|++|++|+++|+||||++++||+||++.  ..++++++++|.++++++|++|++.|.|+|+|+||+|++++++++
T Consensus       165 la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~  242 (321)
T PTZ00325        165 VAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST  242 (321)
T ss_pred             HHHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence            999999999999999999997338999999982  125666799999999999999999876668999999999999999


Q ss_pred             HHHhccCCCCCeEEeeeecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172          330 SSLRALDGDGDVYECVFVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ  408 (412)
Q Consensus       330 ail~~~~g~~~v~~~s~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~  408 (412)
                      +|++++.+++.+++|++++++|. +++|||+||+||++|++++++  +++|+++|+++|++|++.|++.+++|+.|++|.
T Consensus       243 ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~~  320 (321)
T PTZ00325        243 SVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLP--IGPLNAYEEELLEAAVPDLKKNIEKGLEFARKK  320 (321)
T ss_pred             HHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998766788999998887763 567999999999999999998  468999999999999999999999999999863

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=3e-61  Score=477.96  Aligned_cols=310  Identities=60%  Similarity=0.864  Sum_probs=274.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||+|.+|+.+++.+.. .++..+|+|+|+++ ..++++|+.|......+.. ...+|+.++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~-~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE-eCCCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999998866 57778999999976 5677889988532222221 1145744589999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA  251 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la  251 (412)
                      +++++++|.|++..|+++++++++.|++++|+++++++|||+|+|++++.+.+++.+|+|++||||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888877777799999999999998899999999999


Q ss_pred             HHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHH
Q 015172          252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS  331 (412)
Q Consensus       252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ai  331 (412)
                      +++++++++|+++|+||||++++||+||++ +-..++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999877999999999 4344677779999999999999999988666899999999999999999


Q ss_pred             HhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015172          332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK  407 (412)
Q Consensus       332 l~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~  407 (412)
                      +++++++++++|+++++++-.+++|||+||+||++|++++++  +++|+++|+++|++|++.|++.+++|++|+++
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLP--IGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            998776788999887765423457999999999999999999  23999999999999999999999999999875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.1e-61  Score=477.72  Aligned_cols=286  Identities=24%  Similarity=0.361  Sum_probs=256.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC---CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP---SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~---~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+|||| |.||+++|+.++.+++++||+|+|+++  ++|+++||.|....   ..+. +. ++||+ +++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~-i~-~~~y~-~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTK-IR-AGDYD-DCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEE-EE-ECCHH-HhCCCCEEEECC
Confidence            7999998 999999999999999999999999987  78999999997532   1233 33 36786 799999999999


Q ss_pred             CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172          170 GVPRKPGMT--RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA  246 (412)
Q Consensus       170 g~p~k~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~  246 (412)
                      |.||+|||+  |+|++..|++|++++++.+.+++|++++|++|||+|    ++++++++.+|+||+||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999    67888999999999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC------ChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172          247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSA  316 (412)
Q Consensus       247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~------~~~~~~~l~~~v~~~g~eii~~K~g~gst  316 (412)
                      +++||+++|+++++|+++|||||| ++++|+||+++    |..++      .+.++++|.++++++|++|+++|   |+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHG-SHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCC-CceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence            999999999999999999999996 79999999986    32222      22357899999999999999988   899


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      +|++|+++++++++|+.|   ++.++|++.. +++| +++.|||+||+||++|++++++   ++||++|+++|++|++.|
T Consensus       229 ~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~---l~L~~~E~~~l~~s~~~i  302 (307)
T cd05290         229 NAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLE---IPLDEWELEKLHKSAKAI  302 (307)
T ss_pred             hHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecC---CCCCHHHHHHHHHHHHHH
Confidence            999999999999999988   4689998755 4445 3567999999999999999999   789999999999999999


Q ss_pred             HHHH
Q 015172          395 KASI  398 (412)
Q Consensus       395 ~~~i  398 (412)
                      ++.+
T Consensus       303 ~~~~  306 (307)
T cd05290         303 RETI  306 (307)
T ss_pred             HHHh
Confidence            9765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8.5e-61  Score=474.48  Aligned_cols=291  Identities=25%  Similarity=0.359  Sum_probs=261.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|||| |.||+++|+.++.+++++||+|+|+++  ++|+++||.|+........+..++||+ +++|||+||+++|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG   80 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG   80 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence            469999998 999999999999999999999999987  789999999987322222455567997 6999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++|||+|+|++..|+++++++++.|++++|++++|++|||+|    ++++++++.+|+|++||||+ |.||++|++++
T Consensus        81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~  156 (312)
T cd05293          81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYL  156 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    67899999999999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC--------ChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF--------TDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~--------~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +|+++++++++|+++|+|||| +++||+||++.    |..++        +++++++|.++++++|++|+++|   |+|+
T Consensus       157 la~~l~v~~~~v~~~v~GeHG-~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~  232 (312)
T cd05293         157 IAERLGVAPSSVHGWIIGEHG-DSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GYTS  232 (312)
T ss_pred             HHHHhCCChhhEEEEEeecCC-CCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CCch
Confidence            999999999999999999996 79999999986    32222        23458999999999999999988   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      |++|+++++++++|+.+   ++.+++++.. ++.|  +++.|||+||+||++|++++++   ++|+++|+++|++|++.|
T Consensus       233 ~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~---l~L~~~E~~~l~~s~~~i  306 (312)
T cd05293         233 WAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK---QPLTEEEQEKLQKSADTL  306 (312)
T ss_pred             HHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec---CCCCHHHHHHHHHHHHHH
Confidence            99999999999999988   4678898755 4433  4677999999999999999999   789999999999999999


Q ss_pred             HHHHH
Q 015172          395 KASIE  399 (412)
Q Consensus       395 ~~~i~  399 (412)
                      ++.++
T Consensus       307 ~~~~~  311 (312)
T cd05293         307 WEVQK  311 (312)
T ss_pred             HHHhh
Confidence            98765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=5.7e-61  Score=477.26  Aligned_cols=297  Identities=29%  Similarity=0.422  Sum_probs=260.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCce-eeecCCCcHHhhcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQV-LDFTGPEELASALKG  161 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~  161 (412)
                      .+.||+||||+|.||+++|+.|+.+++++     ||+|+|+++    ++|+++||.|+.++..- ..++ +++|+ +++|
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~-~~~d   79 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEE-AFKD   79 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHH-HhCC
Confidence            45899999988999999999999999999     999999954    68999999999743211 1233 46776 7999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEecc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGVT  239 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGlt  239 (412)
                      ||+||++||.|++|||+|+|++..|++++++++++|++++| ++++|++|||+|    ++++++++.+ |+|++||||+|
T Consensus        80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~t  155 (323)
T TIGR01759        80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN----TNALIASKNAPDIPPKNFSAMT  155 (323)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEee
Confidence            99999999999999999999999999999999999999997 999999999999    6788889999 99999999999


Q ss_pred             ccchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCC-CChHH--HHHHHHHHhhccchhhhccc
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVS-FTDEE--VGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~--~~~l~~~v~~~g~eii~~K~  311 (412)
                      .||++|||++||+++|++|++|+ .+|||||| ++++|+||+++    |..+ +++++  +++|.+++++++++|+++| 
T Consensus       156 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (323)
T TIGR01759       156 RLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-  233 (323)
T ss_pred             HHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc-
Confidence            99999999999999999999996 56999997 79999999986    3344 34433  6899999999999999988 


Q ss_pred             CCCchhh-hHHHHHHHHHHHHHhccCCCCCeEEee-eecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          312 GAGSATL-SMAYAAARFVESSLRALDGDGDVYECV-FVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       312 g~gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                        |+|+| ++|+++++++++|++|.+ .++++||| |+++ +|  ++++|||+||+||++|++++++ | ++|+++|+++
T Consensus       234 --G~t~~~~~a~a~~~iv~ail~~~~-~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~-~-l~L~~~E~~~  308 (323)
T TIGR01759       234 --GASSAASAANAAIDHVRDWVTGTP-EGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVE-G-LPLDDFVRGK  308 (323)
T ss_pred             --CCcchHHHHHHHHHHHHHHHcCCC-CCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcC-C-CCCCHHHHHH
Confidence              78999 577999999999999952 15799998 5666 54  4678999999999999999988 3 6899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015172          387 LEALKPELKASIEKG  401 (412)
Q Consensus       387 L~~sa~~L~~~i~~~  401 (412)
                      |++|++.|+++++++
T Consensus       309 l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       309 LDATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998763

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=4.5e-60  Score=475.00  Aligned_cols=291  Identities=25%  Similarity=0.396  Sum_probs=261.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +||+|||+ |.||+++|+.++.+++++||+|+|+++  ++|+++||.|+........+.+++||+ +++|||+||++||.
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCC
Confidence            69999998 999999999999999999999999987  789999999986321113455556897 59999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~l  250 (412)
                      |++|||+|.|++..|++++++++++|+++||++++|++|||+|    ++++++++.+|+|++||||+ |.||++|++++|
T Consensus       116 ~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd----v~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~l  191 (350)
T PLN02602        116 RQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLI  191 (350)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHHhCCCHHHEEeecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    67888889889999999999 699999999999


Q ss_pred             HHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC--------CChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172          251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS--------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL  318 (412)
Q Consensus       251 a~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~--------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~  318 (412)
                      |+++|+++++|+++|+|||| +++||+||+++    |..+        +++++++++.++++++|++|+++|   |+|+|
T Consensus       192 A~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~~  267 (350)
T PLN02602        192 ADHLDVNAQDVQAYIVGEHG-DSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTSW  267 (350)
T ss_pred             HHHhCCCccceeeeEEecCC-CceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccHH
Confidence            99999999999999999996 79999999975    3221        344557899999999999999988   89999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCeEEeeeecC-CCC---CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          319 SMAYAAARFVESSLRALDGDGDVYECVFVES-NLT---ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i~---~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      ++|+++++++++|++|   ++.++||+.... +|.   +++|+|+||+||++|++++++   ++|+++|+++|++|++.|
T Consensus       268 gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~---l~L~~~E~~~l~~sa~~l  341 (350)
T PLN02602        268 AIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVN---VHLTDEEAERLRKSAKTL  341 (350)
T ss_pred             HHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEec---CCCCHHHHHHHHHHHHHH
Confidence            9999999999999999   468999986544 442   567999999999999999999   789999999999999999


Q ss_pred             HHHHHH
Q 015172          395 KASIEK  400 (412)
Q Consensus       395 ~~~i~~  400 (412)
                      ++.++.
T Consensus       342 ~~~~~~  347 (350)
T PLN02602        342 WEVQSQ  347 (350)
T ss_pred             HHHHHH
Confidence            988765

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.4e-60  Score=446.95  Aligned_cols=291  Identities=23%  Similarity=0.357  Sum_probs=266.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ....||.|+|+ |.||.++|+.++.+++.+|++|+|+++  ++|+++||+|.........+....||. +.+++|+||++
T Consensus        18 ~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~-~sa~S~lvIiT   95 (332)
T KOG1495|consen   18 FKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYS-VSANSKLVIIT   95 (332)
T ss_pred             ccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCccc-ccCCCcEEEEe
Confidence            34679999998 999999999999999999999999998  799999999987544444556678997 79999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      ||..+++|++|+|++.+|+.|++.+++++.+|.||++++++|||+|    |+||+.|+.+|+|++||||. |+|||+|||
T Consensus        96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nRViGsGcnLDsaRFr  171 (332)
T KOG1495|consen   96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNRVIGSGCNLDSARFR  171 (332)
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccceeccCcCccHHHHH
Confidence            9999999999999999999999999999999999999999999999    88999999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC--------CCChHHHHHHHHHHhhccchhhhcccCCCc
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV--------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGS  315 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~--------~~~~~~~~~l~~~v~~~g~eii~~K~g~gs  315 (412)
                      ++++++||++|++++++|||||| ++.||+||...    +..        ..+++.|+++.+++.+.+|||++.|   ||
T Consensus       172 yLi~~~Lg~~pss~hgwIiGEHG-dSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---Gy  247 (332)
T KOG1495|consen  172 YLIGNRLGVHPSSCHGWIIGEHG-DSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---GY  247 (332)
T ss_pred             HHHHHHhCCCcccceEEEeeccC-CccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---Cc
Confidence            99999999999999999999997 79999999874    221        1456679999999999999999999   99


Q ss_pred             hhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecC--CCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          316 ATLSMAYAAARFVESSLRALDGDGDVYECVF-VES--NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       316 t~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~--~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      |+|++|.++++++++|++|+   ++++|++. +.+  ++.+++|+|.||++|++|+..+++   .+|+++|+++|.+|++
T Consensus       248 TswaIglsva~l~~ail~n~---~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~---~~Lt~~E~akL~kSa~  321 (332)
T KOG1495|consen  248 TSWAIGLSVADLAQAILRNL---RRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVK---QKLTDEEVAKLKKSAK  321 (332)
T ss_pred             hHHHHHHHHHHHHHHHHhCc---CceeeeeeccccccCCCCceEEecceeecCCchhhhhc---ccCCHHHHHHHHHHHH
Confidence            99999999999999999995   68999984 443  367788999999999999999999   8999999999999999


Q ss_pred             HHHHH
Q 015172          393 ELKAS  397 (412)
Q Consensus       393 ~L~~~  397 (412)
                      .|.+.
T Consensus       322 tl~~~  326 (332)
T KOG1495|consen  322 TLLEA  326 (332)
T ss_pred             HHHHH
Confidence            99753

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=3.3e-60  Score=467.89  Aligned_cols=282  Identities=27%  Similarity=0.447  Sum_probs=253.0

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce-eeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172           98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTGPEELASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus        98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~aDiVIiaag~p~k  174 (412)
                      |||+ |.||+++|+.++.+++++||+|+|+++  ++|+++||.|+...... ..++ .+||+ +++|||+||+++|.||+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~-~~~daDivVitag~~rk   77 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYS-DCKDADLVVITAGAPQK   77 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHH-HHCCCCEEEECCCCCCC
Confidence            6898 999999999999999999999999987  79999999998744321 1344 46786 79999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHHH
Q 015172          175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQK  253 (412)
Q Consensus       175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~~  253 (412)
                      |||+|+|++..|++++++++++|++++|++++|++|||+|    ++++++++.+++|++||||+ |.||++|+++++|++
T Consensus        78 ~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~  153 (299)
T TIGR01771        78 PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEK  153 (299)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999    67888999999999999999 889999999999999


Q ss_pred             cCCCCCCeeeeEEcccCCcccccccccCC----CCCCC-------ChHHHHHHHHHHhhccchhhhcccCCCchhhhHHH
Q 015172          254 KNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF-------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY  322 (412)
Q Consensus       254 l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~-------~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~  322 (412)
                      +++++++|+++|+|||| ++++|+||+++    |..++       ++.++++|.++++++|++|+++|   |+|+|++|+
T Consensus       154 l~v~~~~V~~~v~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a~  229 (299)
T TIGR01771       154 LGVDPQSVHAYIIGEHG-DSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGM  229 (299)
T ss_pred             hCcCcCeEEEEEEecCC-CceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHHH
Confidence            99999999999999996 79999999986    43333       13357899999999999999988   899999999


Q ss_pred             HHHHHHHHHHhccCCCCCeEEee-eecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172          323 AAARFVESSLRALDGDGDVYECV-FVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA  396 (412)
Q Consensus       323 a~~~ii~ail~~~~g~~~v~~~s-~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~  396 (412)
                      ++++++++|+.|   +++++||| +++++|. .++|||+||+||++|++++++   ++|+++|+++|++|++.||+
T Consensus       230 a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---l~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       230 AVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIE---LPLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEcc---CCCCHHHHHHHHHHHHHHhC
Confidence            999999999998   47899997 5555552 357999999999999999999   78999999999999999873

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-59  Score=466.80  Aligned_cols=298  Identities=24%  Similarity=0.367  Sum_probs=261.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALK  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~  160 (412)
                      .++||+||||+|.||+++|+.|+..++++     ||+|+|+++    ++|+++||.|+..+.  .+ .++ +++|+ +++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~i~-~~~y~-~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-VIT-DDPNV-AFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-EEe-cChHH-HhC
Confidence            35799999988999999999999999999     999999954    689999999987432  22 344 46776 799


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV  238 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl  238 (412)
                      |||+||++||.|++|||+|.|++..|++++++++++|++++ |++++|++|||+|    ++++++++.+ |+|++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN----TNALIAMKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999998 8999999999999    6677788888 9999999999


Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeE-EcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhcc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPV-VGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAK  310 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~V-iG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K  310 (412)
                      |.||++|||++||+++++++++|++++ ||||| +++||+||+++    |..++ ++++  +++|.++++++|++|+++|
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  234 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR  234 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence            999999999999999999999999965 89997 69999999986    33343 4444  5789999999999999988


Q ss_pred             cCCCchhhhHHHH-HHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          311 AGAGSATLSMAYA-AARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       311 ~g~gst~~s~A~a-~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                         |+|+|++|.+ +++++++|+.+.+ +++++|||++.. +|  ++++|||+||+|| +|+++++. | ++|+++|+++
T Consensus       235 ---G~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~-~-l~L~~~E~~~  307 (326)
T PRK05442        235 ---GASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQ-G-LEIDDFSREK  307 (326)
T ss_pred             ---CCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeC-C-CCCCHHHHHH
Confidence               7899999999 5999999999842 357999986544 44  4678999999999 99999965 2 6899999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015172          387 LEALKPELKASIEKGVAF  404 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~~~  404 (412)
                      |++|++.|+++.+++..+
T Consensus       308 l~~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        308 IDATLAELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999887654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=9.9e-59  Score=460.55  Aligned_cols=290  Identities=25%  Similarity=0.387  Sum_probs=260.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+|||| |.||+++|+.++..++++||+|+|+++  ++|+++||.|+... ..+ .+. +++|+ +++|||+||+++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~-~i~-~~~~~-~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPT-KIY-AGDYS-DCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCe-EEE-eCCHH-HhCCCCEEEEec
Confidence            469999998 999999999999999999999999987  78999999998632 223 333 46786 699999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++|||+|.|++..|+++++++++++++++|+++++++|||+|    ++++++++.+|+|++||||+ |.||+.|+++
T Consensus        82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d----~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~  157 (315)
T PRK00066         82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKERVIGSGTSLDSARFRY  157 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHH----HHHHHHHHHhCCCHHHEeecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    66778888889999999999 7899999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC-------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV-------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~-------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      ++|+++|+++++|+++|+|+|| ++++|+||++++    ..       .+++++++++.++++++|++|++.|   |+++
T Consensus       158 ~la~~l~v~~~~V~~~viGeHG-~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t~  233 (315)
T PRK00066        158 MLSEKLDVDPRSVHAYIIGEHG-DTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GATY  233 (315)
T ss_pred             HHHHHhCCCcccEEEEEEecCC-CcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Ceeh
Confidence            9999999999999999999996 799999999863    21       1455678899999999999999988   7999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      |++|+++++++++|+++   ++.++|++.+ +++| ++++|||+||+||++||+++++   ++|+++|+++|++|+++|+
T Consensus       234 ~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~---l~L~~~E~~~L~~s~~~l~  307 (315)
T PRK00066        234 YGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVE---LPLNDDEKQKFAHSADVLK  307 (315)
T ss_pred             HHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998   4689999855 4445 3567999999999999999999   7899999999999999999


Q ss_pred             HHHHH
Q 015172          396 ASIEK  400 (412)
Q Consensus       396 ~~i~~  400 (412)
                      +.++.
T Consensus       308 ~~~~~  312 (315)
T PRK00066        308 EIMDE  312 (315)
T ss_pred             HHHHH
Confidence            98875

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=1.7e-58  Score=456.23  Aligned_cols=287  Identities=30%  Similarity=0.417  Sum_probs=257.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |+|||+ |.||+++|+.++..|++++|+|+|+++  ++++++||.|.........+..++||+ ++++||+||+++|.|+
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCCCCEEEEcCCCCC
Confidence            689998 999999999999999999999999987  789999999987542112333346786 7999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHH
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQ  252 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~  252 (412)
                      +|||+|.|++..|++++++++++|+++||++++|++|||+|    ++++++++.+|+||+||||+ |.||+.|+++++|+
T Consensus        79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~  154 (300)
T cd00300          79 KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAE  154 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999    67888899999999999999 78999999999999


Q ss_pred             HcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC---ChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHH
Q 015172          253 KKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF---TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA  325 (412)
Q Consensus       253 ~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~---~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~  325 (412)
                      ++++++++|+++|+|+|| ++++|+||+++    |..++   +++++++|.+++++++++|+++|   |+++|++|++++
T Consensus       155 ~l~v~~~~v~~~viGeHg-~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~~  230 (300)
T cd00300         155 KLDVDPQSVHAYVLGEHG-DSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAIA  230 (300)
T ss_pred             HhCCCcccEEEEEEeccC-CceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHHH
Confidence            999999999999999996 79999999986    44332   34568899999999999999988   899999999999


Q ss_pred             HHHHHHHhccCCCCCeEEeeeecC-CC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172          326 RFVESSLRALDGDGDVYECVFVES-NL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI  398 (412)
Q Consensus       326 ~ii~ail~~~~g~~~v~~~s~v~~-~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i  398 (412)
                      +++++|+++   ++.++||+++.. +| .+++|||+||+||++|++++++   ++|+++|+++|++|+++|++.+
T Consensus       231 ~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~---l~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         231 DIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILE---IPLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEec---CCCCHHHHHHHHHHHHHHHHHh
Confidence            999999998   478999997654 35 3578999999999999999998   7899999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=2.8e-58  Score=471.75  Aligned_cols=303  Identities=23%  Similarity=0.305  Sum_probs=264.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhC-------CCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMS-------PLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~-------gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~  161 (412)
                      .++.||+||||+|.||+++|+.|+.+       ++++||+|+|+++  ++|+++||.|+..+........+.||+ +++|
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye-~~kd  176 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYE-VFQD  176 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHH-HhCc
Confidence            34689999998899999999999999       7778999999987  799999999987443212222356886 7999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-c
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-T  239 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t  239 (412)
                      ||+||+++|.||+|||+|.|++..|.+|++++++.|++ ++|++++|++|||+|    ++++++++.+|++|+|+||+ |
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD----v~t~v~~k~sg~~~~rViGtgT  252 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN----TNALICLKNAPNIPAKNFHALT  252 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH----HHHHHHHHHcCCCCcceEEeec
Confidence            99999999999999999999999999999999999999 579999999999999    67888899999999999999 8


Q ss_pred             ccchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhccc
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K~  311 (412)
                      .||++||+++||+++|+++++|+ ++|||||| +++||+||+++    |..++ ++++  +++|.++++++|++|+++| 
T Consensus       253 ~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k-  330 (444)
T PLN00112        253 RLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW-  330 (444)
T ss_pred             cHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhcc-
Confidence            99999999999999999999995 58999997 69999999986    44333 3334  6899999999999999987 


Q ss_pred             CCCchhh-hHHHHHHHHHHHHHhccCCCCCeEEeeee-cCC-C--CCCCceeeeEEEcCCceEEee-cCCCCCCCHHHHH
Q 015172          312 GAGSATL-SMAYAAARFVESSLRALDGDGDVYECVFV-ESN-L--TELPFFASRVKLGRNGVESLI-SSDLQGLTEYEQK  385 (412)
Q Consensus       312 g~gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~-i--~~~~~~s~Pv~igk~Gv~~v~-~~~l~~Lse~E~~  385 (412)
                        |+++| ++|.++++++++|+.+.+ +++++|||++ +++ |  ++++|||+||+||++|+++++ +   ++|+++|++
T Consensus       331 --G~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~e---l~L~~~E~~  404 (444)
T PLN00112        331 --GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKD---VEIDDYLRE  404 (444)
T ss_pred             --CchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCC---CCCCHHHHH
Confidence              66666 999999999999994433 5789999865 442 5  467899999999999999999 6   789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 015172          386 ALEALKPELKASIEKGVAFAQ  406 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~~~~~~  406 (412)
                      +|++|+++|.++.+.+..++.
T Consensus       405 ~l~~Sa~~L~~e~~~~~~~~~  425 (444)
T PLN00112        405 RIKKSEAELLAEKRCVAHLTG  425 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988776654

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-57  Score=452.45  Aligned_cols=297  Identities=31%  Similarity=0.499  Sum_probs=263.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +.+||+|||| |.||+++++.++..++ .+|+|+|+++  ++++++|+.|...... ...+.+++||+ +++|||+||++
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit   80 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT   80 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence            3579999998 9999999999999997 6899999987  5788899999753221 22455667997 89999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~  247 (412)
                      +|.|+++|++|+|++..|.+++++++++|+++||++|+|++|||+|    ++++++++.+++|++||||+| .||++|++
T Consensus        81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~  156 (319)
T PTZ00117         81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFR  156 (319)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    668888899999999999995 89999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      ++||+++++++++|+++|+|||| ++++|+||+++    |..      .+++++++++.++++++|++|++++ |+|+|+
T Consensus       157 ~~la~~l~v~~~~v~~~viGeHg-~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~  234 (319)
T PTZ00117        157 CNLAEKLGVSPGDVSAVVIGGHG-DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAF  234 (319)
T ss_pred             HHHHHHhCCCcccceEEEeecCC-CcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChH
Confidence            99999999999999999999996 79999999985    322      2566678999999999999999974 448999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVF-VESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      |++|+++++++++|+.|   ++.++|||. ++++|. .++|||+||+||++|++++++   ++|+++|+++|++|++.|+
T Consensus       235 ~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---l~l~~~E~~~l~~s~~~l~  308 (319)
T PTZ00117        235 FAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIE---LELNAEEKELFDKSIESIQ  308 (319)
T ss_pred             HHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998   578999984 454552 357999999999999999999   7899999999999999999


Q ss_pred             HHHHHHHH
Q 015172          396 ASIEKGVA  403 (412)
Q Consensus       396 ~~i~~~~~  403 (412)
                      +.+++...
T Consensus       309 ~~~~~~~~  316 (319)
T PTZ00117        309 ELTQKAKA  316 (319)
T ss_pred             HHHHHHHH
Confidence            99887544

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=3e-58  Score=458.17  Aligned_cols=294  Identities=29%  Similarity=0.414  Sum_probs=257.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~a  162 (412)
                      .||+||||+|.||+++++.|+..++++     +|+|+|+++    ++++++||.|..++.  .. .++ +.+|+ +++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~i~-~~~~~-~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-VIT-TDPEE-AFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-EEe-cChHH-HhCCC
Confidence            389999988999999999999999988     499999985    688999999986432  12 333 35665 89999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCC-CCCCCeEeccc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGV-YDPKKLFGVTT  240 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg-~~~~kviGlt~  240 (412)
                      |+||++||.|++|||+|+|++..|++++++++++|++++ |++++|++|||+|    ++++++++.+| +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN----TNALIALKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999997 9999999999999    66788899999 59999999999


Q ss_pred             cchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC----ChHH--HHHHHHHHhhccchhhhc
Q 015172          241 LDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF----TDEE--VGDLTVRIQNAGTEVVEA  309 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~----~~~~--~~~l~~~v~~~g~eii~~  309 (412)
                      |||+|||++||++++++|++|+ ++|||||| ++++|+||+++    |..++    .+++  .++|.+++++++++|+++
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~  232 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHS-NTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK  232 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEeccc-CceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence            9999999999999999999995 68999997 59999999985    33222    2234  578999999999999999


Q ss_pred             ccCCCchhhh-HHHHHHHHHHHHHhccCCCCCeEEee-eecCCC---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHH
Q 015172          310 KAGAGSATLS-MAYAAARFVESSLRALDGDGDVYECV-FVESNL---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQ  384 (412)
Q Consensus       310 K~g~gst~~s-~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~  384 (412)
                      |   |+|+|+ +|+++++++++|++|.+++ .++||| +++++|   +++.|||+||+||++||+++++   ++|+++|+
T Consensus       233 k---g~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~---l~L~~~E~  305 (323)
T cd00704         233 R---GASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVED---LKLNDWLR  305 (323)
T ss_pred             c---CcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecC---CCCCHHHH
Confidence            8   788886 7999999999999996422 799998 455545   3567999999999999999998   78999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015172          385 KALEALKPELKASIEKGV  402 (412)
Q Consensus       385 ~~L~~sa~~L~~~i~~~~  402 (412)
                      ++|++|++.|+++.++++
T Consensus       306 ~~l~~s~~~l~~~~~~~~  323 (323)
T cd00704         306 EKLKATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999988753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-57  Score=453.19  Aligned_cols=292  Identities=31%  Similarity=0.544  Sum_probs=259.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+|||| |.||+++|+.++..++ .+|+|+|+++  +++.++|+.|.... .....+.+++||+ +++|||+||+++
T Consensus         6 ~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta   82 (321)
T PTZ00082          6 RRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA   82 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence            469999998 9999999999999998 4699999988  57788999987422 1122455668996 899999999999


Q ss_pred             CCCCCCCC-----chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccch
Q 015172          170 GVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDV  243 (412)
Q Consensus       170 g~p~k~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds  243 (412)
                      |.|++||+     +|+|++.+|++++++++++|+++||++++|++|||+|    ++++++++.+++|++||||+| .||+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt~lds  158 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAGVLDS  158 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecCcccH
Confidence            99999999     9999999999999999999999999999999999999    667888899999999999994 8999


Q ss_pred             HHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCC
Q 015172          244 VRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGA  313 (412)
Q Consensus       244 ~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~  313 (412)
                      +|++++||+++++++++|+++|+|||| +++||+||+++    |..+      ++++++++|.++++++|++|+++| |+
T Consensus       159 ~R~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gk  236 (321)
T PTZ00082        159 SRLRTYIAEKLGVNPRDVHASVIGAHG-DKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GT  236 (321)
T ss_pred             HHHHHHHHHHhCCCcccceeeEEecCC-CceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CC
Confidence            999999999999999999999999995 79999999985    3221      456678999999999999999975 45


Q ss_pred             CchhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          314 GSATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       314 gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      |+|+||+|.++++++++|+.|   +++++|||. ++++|. +++|+|+||+||++|++++++   ++|+++|+++|++|+
T Consensus       237 g~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~sa  310 (321)
T PTZ00082        237 GSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIE---LDLTPEEQKKFDESI  310 (321)
T ss_pred             CccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHH
Confidence            899999999999999999998   578999985 455552 457999999999999999999   789999999999999


Q ss_pred             HHHHHHHH
Q 015172          392 PELKASIE  399 (412)
Q Consensus       392 ~~L~~~i~  399 (412)
                      +.|++.++
T Consensus       311 ~~i~~~~~  318 (321)
T PTZ00082        311 KEVKRLEA  318 (321)
T ss_pred             HHHHHHHh
Confidence            99998764

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.2e-57  Score=451.42  Aligned_cols=288  Identities=28%  Similarity=0.419  Sum_probs=257.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +||+|||+ |.||+++|+.++..|+.++|+|+|+++  +++.++||.|.....  .. .+. +.+++ ++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~-~~~~~-~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIK-AGDYS-DCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEE-cCCHH-HhCCCCEEEEcc
Confidence            48999998 999999999999999888999999987  688899999875322  22 222 35776 699999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++|||+|.|++..|++++++++++|++++|++++|++|||+|    ++++++++.+++||+||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    67888999999999999999 7899999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL  318 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~  318 (412)
                      +||+++++++++|+++|||+|| ++++|+||+++    |..+      +.+++++++.++++++|++|+++|   |+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg-~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHG-DSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCC-CceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence            9999999999999999999996 79999999986    3322      345668999999999999999988   89999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCeEEeeeec-CCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172          319 SMAYAAARFVESSLRALDGDGDVYECVFVE-SNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA  396 (412)
Q Consensus       319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~  396 (412)
                      ++|.++++++++|+.+   ++.++||+... ++| .+++|||+||+||++|++++++   ++|+++|+++|++|+++|++
T Consensus       229 ~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~s~~~l~~  302 (306)
T cd05291         229 GIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIE---LDLTEEEQEKFEKSADIIKE  302 (306)
T ss_pred             HHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEEC---CCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998   57899998654 445 3467999999999999999999   78999999999999999998


Q ss_pred             HHH
Q 015172          397 SIE  399 (412)
Q Consensus       397 ~i~  399 (412)
                      .++
T Consensus       303 ~~~  305 (306)
T cd05291         303 NIK  305 (306)
T ss_pred             Hhh
Confidence            764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=9.1e-58  Score=451.87  Aligned_cols=291  Identities=29%  Similarity=0.469  Sum_probs=258.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||+ |.||.++|+.++.+|+. +|+|+|+++  ..+.+.|+.|...... ...++.++||+ .+++||+||+++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence            69999998 99999999999999987 799999987  5667788888653211 23455678997 4999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|+++|++|+|++..|++++++++++|.+++|++++|++|||+|    ++++++++.+|+|++||||+ |.|||+|++++
T Consensus        79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~  154 (305)
T TIGR01763        79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF  154 (305)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    77888899999999999999 58999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA  324 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~  324 (412)
                      ||++|++++++|+++|+|||| ++++|+||+++    |..+ ++++++++|.++++++|++|++.| |+|+|+|++|+++
T Consensus       155 la~~l~v~~~~v~~~v~GeHg-~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~  232 (305)
T TIGR01763       155 IAMELGVSVQDVTACVLGGHG-DAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASV  232 (305)
T ss_pred             HHHHhCcCHHHeeeeEEecCC-CcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence            999999999999999999996 79999999985    4433 345568999999999999999985 4589999999999


Q ss_pred             HHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172          325 ARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE  399 (412)
Q Consensus       325 ~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~  399 (412)
                      ++|+++|+.|   ++.++|||.. +++| .+++|+|+||+||++||+++++   ++|+++|+++|++|+..|++.++
T Consensus       233 ~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~s~~~i~~~~~  303 (305)
T TIGR01763       233 VEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYE---LKLDQSELALLNKSAKIVDENCK  303 (305)
T ss_pred             HHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999998   4679999854 4445 2567999999999999999999   78999999999999999998764

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=2.1e-57  Score=451.94  Aligned_cols=294  Identities=25%  Similarity=0.392  Sum_probs=259.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~  161 (412)
                      ++||+||||+|.||+++|+.++..++++     ||+|+|+++    ++|+++||.|+.++.  .+ .++ +.+|+ +++|
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~i~-~~~~~-~~~d   78 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-VIT-DDPNV-AFKD   78 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-EEe-cCcHH-HhCC
Confidence            5799999988999999999999999999     999999954    689999999987442  22 344 46776 7999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEecc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGVT  239 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGlt  239 (412)
                      ||+||++||.|++|||+|.|++..|++++++++++|++++ |++++|++|||+|    ++++++++.+ ++||+||||+|
T Consensus        79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN----TNALIAMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH----HHHHHHHHHcCCCChHheEEeh
Confidence            9999999999999999999999999999999999999999 5999999999999    6677788888 59999999999


Q ss_pred             ccchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCC----CCCC-CChHH--HHHHHHHHhhccchhhhccc
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTM----PSVS-FTDEE--VGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~--~~~l~~~v~~~g~eii~~K~  311 (412)
                      .||++||++++|+++|+++++|++ +|+|+|| ++++|+||++.    |..+ +.+.+  +++|.+++++++++|+++| 
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  232 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-  232 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc-
Confidence            999999999999999999999998 5689996 69999999985    4433 34443  6799999999999999988 


Q ss_pred             CCCchhhhHH-HHHHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          312 GAGSATLSMA-YAAARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       312 g~gst~~s~A-~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                        |+++|+++ +++++++++||+|.+ ++.++||+.+.. +|  ++++|||+||+||++||+++++   ++|+++|+++|
T Consensus       233 --G~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~---l~L~~~E~~~l  306 (322)
T cd01338         233 --GASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG---LEIDDFAREKI  306 (322)
T ss_pred             --CCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeC---CCCCHHHHHHH
Confidence              78999999 599999999999853 247999986644 44  4678999999999999999999   78999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKG  401 (412)
Q Consensus       388 ~~sa~~L~~~i~~~  401 (412)
                      ++|++.|+++.++.
T Consensus       307 ~~s~~~l~~~~~~~  320 (322)
T cd01338         307 DATLAELLEEREAV  320 (322)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.9e-57  Score=458.09  Aligned_cols=300  Identities=23%  Similarity=0.314  Sum_probs=260.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEE--ecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLY--DVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~--Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +.||+||||+|.||+++|+.++..++++     .|+|+  |+++  ++|+++||.|+..+........+++|+ +++|||
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~-~~kdaD  122 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDAD  122 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH-HhCCCC
Confidence            5899999988999999999999999998     57777  5555  789999999987442112111346786 799999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-ccc
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTL  241 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~L  241 (412)
                      +||+++|.||+|||+|.|++..|++|++++++.|++++ |++++||+|||+|    ++++++++.+|++|+|+||+ |.|
T Consensus       123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD----v~t~v~~k~sg~~~~rviG~gT~L  198 (387)
T TIGR01757       123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN----TNALIAMKNAPNIPRKNFHALTRL  198 (387)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH----HHHHHHHHHcCCCcccEEEecchh
Confidence            99999999999999999999999999999999999988 9999999999999    67888899999999999999 899


Q ss_pred             chHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhcccCC
Q 015172          242 DVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAKAGA  313 (412)
Q Consensus       242 ds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K~g~  313 (412)
                      |++|+|++||+++++++++|+ ++|||||| +++||+||+++    |..++ ++.+  +++|.++++++|++|++.|   
T Consensus       199 DsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~K---  274 (387)
T TIGR01757       199 DENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKW---  274 (387)
T ss_pred             HHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhcc---
Confidence            999999999999999999995 99999997 79999999985    54443 3323  6899999999999999987   


Q ss_pred             Cchhh-hHHHHHHHHHHHHHhccCCCCCeEEeeeec-CC-C--CCCCceeeeEEEcCCceEEee-cCCCCCCCHHHHHHH
Q 015172          314 GSATL-SMAYAAARFVESSLRALDGDGDVYECVFVE-SN-L--TELPFFASRVKLGRNGVESLI-SSDLQGLTEYEQKAL  387 (412)
Q Consensus       314 gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~-i--~~~~~~s~Pv~igk~Gv~~v~-~~~l~~Lse~E~~~L  387 (412)
                      |+++| ++|.++++++++|+.+.+ ++.++|+|.+. ++ |  +++.|||+||+||++|+++++ +   ++|+++|+++|
T Consensus       275 G~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~---l~L~~~E~~~l  350 (387)
T TIGR01757       275 GRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATD---VSMDDFLRERI  350 (387)
T ss_pred             CchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCC---CCCCHHHHHHH
Confidence            65666 999999999999994433 46799998664 42 5  467899999999999999997 7   78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKGVAFA  405 (412)
Q Consensus       388 ~~sa~~L~~~i~~~~~~~  405 (412)
                      ++|+++|+++.+.++..+
T Consensus       351 ~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       351 RKSEDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999988764

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.8e-56  Score=442.01  Aligned_cols=288  Identities=30%  Similarity=0.443  Sum_probs=257.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||+ |.||.++|+.++.+|++++|+|+|+++  ..+++.|+.|.... .... +. ++|++ ++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i~-~~d~~-~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-IY-AGDYA-DCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeE-Ee-eCCHH-HhCCCCEEEEccC
Confidence            69999998 999999999999999889999999987  67899999998532 1222 33 46786 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++++++|.|++..|+++++++++++++++|+++++++|||+|    ++++++++.+|+|++||||+ |.||++|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    66778888899999999999 89999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC--------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV--------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~--------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      ||+++++++++|+++|+|||| ++++|+||+++    |..        .++++++++|.++++++|++|+++|   |+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg-~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHG-DSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCC-CcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence            999999999999999999996 79999999985    321        2445668999999999999999998   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      |++|+++++|+++|+.+   ++.++||++. +++|. .++|||+||+||++|++++++   ++||++|+++|++|++.|+
T Consensus       229 ~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---~~L~~~E~~~l~~s~~~i~  302 (308)
T cd05292         229 YAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLP---PPLSEEEEEALRASAEVLK  302 (308)
T ss_pred             HHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998   5789999854 44452 456999999999999999999   7899999999999999999


Q ss_pred             HHHH
Q 015172          396 ASIE  399 (412)
Q Consensus       396 ~~i~  399 (412)
                      +.++
T Consensus       303 ~~~~  306 (308)
T cd05292         303 EAIE  306 (308)
T ss_pred             HHHh
Confidence            8875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.8e-55  Score=436.96  Aligned_cols=295  Identities=26%  Similarity=0.345  Sum_probs=254.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCC-CcHHhhcCCCcE
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGP-EELASALKGVNV  164 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t-~d~~~al~~aDi  164 (412)
                      ||+||||+|.||+++++.|+..++++     +|+|+|+++    ++++++||.|+..+.. ..+..+ .+|+ +++|||+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~-~~~~aDi   78 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAV-AFTDVDV   78 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHH-HhCCCCE
Confidence            69999998999999999999999886     799999954    6789999999974432 223333 4465 8999999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172          165 VVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD  242 (412)
Q Consensus       165 VIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld  242 (412)
                      ||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|    ++++++++.+|.+|.++||+ |.||
T Consensus        79 VVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~~~sg~~~~~vig~gt~LD  154 (324)
T TIGR01758        79 AILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN----TNALVLSNYAPSIPPKNFSALTRLD  154 (324)
T ss_pred             EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCcceEEEeeehH
Confidence            9999999999999999999999999999999999996 9999999999999    67888899988888889999 8999


Q ss_pred             hHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCCCC-C-------C-CChHH--HHHHHHHHhhccchhhhcc
Q 015172          243 VVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTMPS-V-------S-FTDEE--VGDLTVRIQNAGTEVVEAK  310 (412)
Q Consensus       243 s~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~p~-~-------~-~~~~~--~~~l~~~v~~~g~eii~~K  310 (412)
                      |+|||++||+++++++++|+ ++|||||| +++||+||++++. .       + +++++  +++|.+++++++++|++.|
T Consensus       155 s~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  233 (324)
T TIGR01758       155 HNRALAQVAERAGVPVSDVKNVIIWGNHS-STQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR  233 (324)
T ss_pred             HHHHHHHHHHHhCCChhhceEeEEEECCC-CCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc
Confidence            99999999999999999996 59999997 6999999998655 2       2 23333  5789999999999999976


Q ss_pred             cCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec-CC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE-SN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       311 ~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                      .  |+++|++|.++++++++|+.+.+ ++.++|||.+. ++ |  ++++|||+||+||++|++.+.+   ++|+++|+++
T Consensus       234 ~--~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~e---l~L~~~E~~~  307 (324)
T TIGR01758       234 K--LSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEG---LCVDDSSRKK  307 (324)
T ss_pred             C--CCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecC---CCCCHHHHHH
Confidence            2  58999999999999999994432 56799998654 34 4  3568999999999777777776   6899999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          387 LEALKPELKASIEKGV  402 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~  402 (412)
                      |++|++.|++.+++++
T Consensus       308 l~~s~~~lk~~~~~~~  323 (324)
T TIGR01758       308 LALTAKELEEERDEAL  323 (324)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998764

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=7.3e-55  Score=430.16  Aligned_cols=288  Identities=33%  Similarity=0.536  Sum_probs=254.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |+|||| |.||.++|+.++..++. +|+|+|+++  +++.++|+.|..... ....+..++||+ ++++||+||+++|.|
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p   77 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCC
Confidence            689998 99999999999999988 999999987  567777888764221 112455567886 699999999999999


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHHHHHH
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVA  251 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~~~la  251 (412)
                      +++|++|+|++.+|++++++++++|+++||++++|++|||+|    ++++++++.+++||+||||+| .||++|++++||
T Consensus        78 ~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la  153 (300)
T cd01339          78 RKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIA  153 (300)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999    678888899999999999995 799999999999


Q ss_pred             HHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHH
Q 015172          252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR  326 (412)
Q Consensus       252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~  326 (412)
                      ++|++++++|+++|+|+|| ++++|+||+++.    ..+ +++++++++.+++++++++|++.| |+|+|+|++|.++++
T Consensus       154 ~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~  231 (300)
T cd01339         154 EELGVSVKDVQAMVLGGHG-DTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAE  231 (300)
T ss_pred             HHhCCCccceEEEEEeCCC-CcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHH
Confidence            9999999999999999995 799999999863    333 345568999999999999999987 568999999999999


Q ss_pred             HHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172          327 FVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI  398 (412)
Q Consensus       327 ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i  398 (412)
                      |+++|+.+   ++.++||+.. ++.| ..++|||+||+||++|++++++   ++||++|+++|++|++.|++.+
T Consensus       232 i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~---l~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         232 MVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIE---LDLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             HHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHh
Confidence            99999998   5789999854 4444 2367999999999999999999   7899999999999999999865

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=1.1e-54  Score=433.23  Aligned_cols=296  Identities=25%  Similarity=0.347  Sum_probs=254.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +.||+|+||+|++|+++++.|+..++++     +|+|+|+++    ++++++|+.|+.++..- .+..++++.++++|||
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~~aD   80 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK-SVVATTDPEEAFKDVD   80 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC-CceecCCHHHHhCCCC
Confidence            5799999999999999999999988875     999999964    57888999998644221 2222456656899999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHh-CCCCCCCeEec-cc
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQK-GVYDPKKLFGV-TT  240 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~-sg~~~~kviGl-t~  240 (412)
                      +||++||.|++++++|.+++..|++|++++++.|++++ |++++|++|||+|    ++++++++. +++|+++ ||+ |.
T Consensus        81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~~~~~~~~~-ig~gt~  155 (325)
T cd01336          81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN----TNALILLKYAPSIPKEN-FTALTR  155 (325)
T ss_pred             EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH----HHHHHHHHHcCCCCHHH-EEeeeh
Confidence            99999999999999999999999999999999999997 8999999999999    667778887 5777777 888 89


Q ss_pred             cchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCCCC--------CCC-ChHH--HHHHHHHHhhccchhhh
Q 015172          241 LDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTMPS--------VSF-TDEE--VGDLTVRIQNAGTEVVE  308 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~p~--------~~~-~~~~--~~~l~~~v~~~g~eii~  308 (412)
                      ||++|++++||+++++++++|+. +|||||| +++||+||++++.        .++ ++++  +++|.+++++++++|++
T Consensus       156 LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG-~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~  234 (325)
T cd01336         156 LDHNRAKSQIALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIK  234 (325)
T ss_pred             HHHHHHHHHHHHHhCcChhhceEeEEEEcCC-CCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999975 5889997 5999999998654        222 3333  58999999999999999


Q ss_pred             cccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec-CCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          309 AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE-SNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       309 ~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                      +|  +|+|+|++|.++++++++||+|.+ ++.++||+.+. ++|  ++++|||+||+||++||+++++   ++|+++|++
T Consensus       235 ~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~---~~L~~~E~~  308 (325)
T cd01336         235 AR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQG---LSIDDFSRE  308 (325)
T ss_pred             cc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecC---CCCCHHHHH
Confidence            75  279999999999999999999742 35799998654 444  4678999999999999999999   789999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          386 ALEALKPELKASIEKG  401 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~  401 (412)
                      +|++|++.|+++++.+
T Consensus       309 ~l~~s~~~l~~e~~~~  324 (325)
T cd01336         309 KIDATAKELVEEKETA  324 (325)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=4e-54  Score=425.69  Aligned_cols=293  Identities=32%  Similarity=0.539  Sum_probs=257.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |+||+|||| |.||+++|+.++..++. +|+|+|+++  +++.+.|+.|..... ....++.++||+ ++++||+||+++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence            689999999 99999999999999987 999999987  577788888864322 112455668886 799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|+++|++|+|++.+|++++++++++|++++|++++|++|||+|    ++++++++.+++||+||||+ |.||++|+++
T Consensus        79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~~  154 (307)
T PRK06223         79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFRT  154 (307)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHHH
Confidence            999999999999999999999999999999999999999999999    67888889999999999999 5899999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHH
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA  323 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a  323 (412)
                      +||+++++++++|+++|+|+|| ++++|+||+++    |..+ ++++.+++|.+++++.+++|++.+ ++|++.|++|.+
T Consensus       155 ~la~~l~v~~~~v~~~viGehg-~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~  232 (307)
T PRK06223        155 FIAEELNVSVKDVTAFVLGGHG-DSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAAS  232 (307)
T ss_pred             HHHHHhCcChhhCcccEEcCCC-CcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHH
Confidence            9999999999999999999996 69999999985    3333 455557899999999999999972 237899999999


Q ss_pred             HHHHHHHHHhccCCCCCeEEeeeec-CCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          324 AARFVESSLRALDGDGDVYECVFVE-SNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       324 ~~~ii~ail~~~~g~~~v~~~s~v~-~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      +++++++|+.+   ++.+++++... +.| .+++|||+||+||++|++++++   ++|+++|+++|++|+++|++.++.
T Consensus       233 ~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        233 IAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIE---LELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             HHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999987   46899998554 333 2567999999999999999999   789999999999999999988764

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=5.9e-54  Score=425.43  Aligned_cols=291  Identities=27%  Similarity=0.466  Sum_probs=256.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      |||+|+||+|.+|+.+++.++..|+.++|+|+|+++    +++.++|+.|...... ...++.++||+ ++++||+||++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            699999988999999999999999988999999954    5788889988642211 11355566786 69999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.|++||++|.|++..|+++++++++.|.+++|++++||++||+|    ++++++++.+|+|++||||+ |.||++|++
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd----~~t~~~~~~~g~~~~~viG~gt~LDs~R~~  155 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD----VMTYKALKESGFDKNRVFGLGTHLDSLRFK  155 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCCHHHEeeccchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    66888889899999999999 789999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC---ChHHHHHHHHHHhhccchhhhcccCCCchhhhH
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF---TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM  320 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~---~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~  320 (412)
                      ++||+++++++++|+++|+|||| ++++|+||+++    |..++   .+++++++.++++++|++|++.|   |+++|++
T Consensus       156 ~~la~~l~v~~~~v~~~viGeHg-~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~~  231 (309)
T cd05294         156 VAIAKHFNVHISEVHTRIIGEHG-DSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYGP  231 (309)
T ss_pred             HHHHHHHCcChHHeEEEEEecCC-CceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhhH
Confidence            99999999999999999999996 79999999986    33232   24568899999999999999998   6789999


Q ss_pred             HHHHHHHHHHHHhccCCCCCeEEeeeecC-CCC--CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          321 AYAAARFVESSLRALDGDGDVYECVFVES-NLT--ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       321 A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i~--~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      |.++++++++|+.|   ++.++|++.... .|.  .+.|+|+||+||++|++++++   ++|+++|+++|++|++.|++.
T Consensus       232 a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~---l~l~~~E~~~l~~s~~~i~~~  305 (309)
T cd05294         232 ASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVP---IEMDDDEREAFRKSAEIVKKY  305 (309)
T ss_pred             HHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeC---CCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998   568999986543 342  256999999999999999999   689999999999999999987


Q ss_pred             HH
Q 015172          398 IE  399 (412)
Q Consensus       398 i~  399 (412)
                      ++
T Consensus       306 ~~  307 (309)
T cd05294         306 TR  307 (309)
T ss_pred             Hh
Confidence            65

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1e-52  Score=415.34  Aligned_cols=272  Identities=24%  Similarity=0.363  Sum_probs=237.6

Q ss_pred             eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCc-HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHH
Q 015172          121 ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVE  195 (412)
Q Consensus       121 ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~  195 (412)
                      .|+|+|+++    ++|+++||.|+..+. ...+..++| |+ +++|||+||++||.|++|||+|.|++..|+++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~-~~~i~~~~~~y~-~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~   92 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPL-LKGVVATTDVVE-ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQAS   92 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHh-cCCcEecCCHHH-HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            899999976    689999999987432 112233345 75 89999999999999999999999999999999999999


Q ss_pred             HHHhh-CCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHHHcCCCCCCe-eeeEEcccCCc
Q 015172          196 AVADN-CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGI  272 (412)
Q Consensus       196 ~i~~~-~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~~l~v~~~~V-~~~ViG~hgg~  272 (412)
                      .|.++ +|++++|++|||+|    ++++++++.+++||+|+||+ |.||++|||++||+++++++++| +++|||||| +
T Consensus        93 ~i~~~~~p~aivivvsNPvD----v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG-~  167 (309)
T PLN00135         93 ALEKHAAPDCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS-S  167 (309)
T ss_pred             HHHHhcCCCeEEEEeCCcHH----HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCC-C
Confidence            99996 79999999999999    67888899999999999999 89999999999999999999999 689999997 5


Q ss_pred             ccccccccCCC--------CCCC-ChHH--HHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCe
Q 015172          273 TILPLLSKTMP--------SVSF-TDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDV  341 (412)
Q Consensus       273 ~~vp~~S~~~p--------~~~~-~~~~--~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v  341 (412)
                      ++||+||+++.        ..++ .+++  +++|.++++++|++|+++|  +|+|+||+|.++++++++|+.+.+ ++.+
T Consensus       168 s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~v  244 (309)
T PLN00135        168 TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGTW  244 (309)
T ss_pred             ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCeE
Confidence            99999999865        2232 3444  6889999999999999974  279999999999999999999532 4689


Q ss_pred             EEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172          342 YECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA  405 (412)
Q Consensus       342 ~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~  405 (412)
                      +|||.+ +++|  ++++|||+||++|++|++.+++   ++|+++|+++|++|++.|+++.+++++.|
T Consensus       245 ~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~---l~L~~~E~~~l~~S~~~lk~~~~~~~~~~  308 (309)
T PLN00135        245 VSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG---LSIDEFSRKKMDATAKELKEEKELAYSCL  308 (309)
T ss_pred             EEEEEEecCccCCcCCeEEEEEEEEECCEEEEecC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999865 4444  4678999999999999999988   78999999999999999999999998765

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=2e-51  Score=406.95  Aligned_cols=275  Identities=21%  Similarity=0.284  Sum_probs=236.4

Q ss_pred             hCCCCCeEEEEecCc----hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHH
Q 015172          115 MSPLVSALHLYDVMN----VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI  189 (412)
Q Consensus       115 ~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i  189 (412)
                      ..++  .|+|+|+++    ++|+++||.|+..+. ... +. ++||+++++|||+||++||.||+|||+|.|++..|++|
T Consensus        13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~-i~-~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I   88 (313)
T TIGR01756        13 NRPV--CLHLLEIPPALNRLEALAMELEDCAFPNLAGT-IV-TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPI   88 (313)
T ss_pred             CCeE--EEEEecCCCccchhHhHHHHHHHhccccCCce-Ee-cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence            4556  899999976    689999999997332 122 22 46786689999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHH-HHhCCCCCCCeEec-cccchHHHHHHHHHHcCCCCCCeeee-E
Q 015172          190 VKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVL-KQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVP-V  265 (412)
Q Consensus       190 ~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~-~~~sg~~~~kviGl-t~Lds~R~~~~la~~l~v~~~~V~~~-V  265 (412)
                      ++++++.|++++ |++++|++|||+|    ++++++ ++.+|+|++ +||+ |.||++|||++||++++++|++|+.+ |
T Consensus        89 ~~~i~~~i~~~a~~~~ivivvtNPvD----v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V  163 (313)
T TIGR01756        89 FKATGEALSEYAKPTVKVLVIGNPVN----TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV  163 (313)
T ss_pred             HHHHHHHHHhhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEE
Confidence            999999999999 5688999999999    678888 699999999 9999 89999999999999999999999765 9


Q ss_pred             EcccCCcccccccccCCC--CC----C---CChH-HHHHHHHHHhhccchhhhcccCCCchhhhHH-HHHHHHHHHHHhc
Q 015172          266 VGGHAGITILPLLSKTMP--SV----S---FTDE-EVGDLTVRIQNAGTEVVEAKAGAGSATLSMA-YAAARFVESSLRA  334 (412)
Q Consensus       266 iG~hgg~~~vp~~S~~~p--~~----~---~~~~-~~~~l~~~v~~~g~eii~~K~g~gst~~s~A-~a~~~ii~ail~~  334 (412)
                      ||||| +++||+||+++.  ..    .   ++++ .++++.++++++|++|+++|   |+|+|+++ .++++++++|+++
T Consensus       164 ~GeHG-~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~ail~~  239 (313)
T TIGR01756       164 WGNHA-ESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKAWLFG  239 (313)
T ss_pred             EECCC-CceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHHHhcC
Confidence            99996 799999999865  21    1   2332 36899999999999999988   79999988 6999999999996


Q ss_pred             cCCCCCeEEeeee-c-C-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172          335 LDGDGDVYECVFV-E-S-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA  405 (412)
Q Consensus       335 ~~g~~~v~~~s~v-~-~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~  405 (412)
                      .+ +++++|||.+ + + +|  +++.|||+||+||++|++++++ | ++|+++|+++|++|+.+|+++.+.+++.|
T Consensus       240 ~~-~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive-~-l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~  312 (313)
T TIGR01756       240 TR-PGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVE-N-FELNPWLKTKLAQTEKDLFEERETALKAL  312 (313)
T ss_pred             CC-CCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43 4679999864 4 3 45  3567999999999999999998 3 57999999999999999999999887654

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=5.5e-51  Score=417.94  Aligned_cols=293  Identities=18%  Similarity=0.201  Sum_probs=249.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecC--c--hhhhhhhhcccCCCCce-eeecCCCcHHhhcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVM--N--VKGVAADLSHCNTPSQV-LDFTGPEELASALKG  161 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~--~--~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~  161 (412)
                      .+.+|+|.||||.+|+++.+.++...+++     .|+|+|+.  .  ++|+++||.|+..+..- ..++ +++|+ +++|
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~~~e-a~~d  199 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TDLDV-AFKD  199 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-ECCHH-HhCC
Confidence            35799999999999999999999865543     69999994  3  78999999999754311 1233 45665 8999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC--CeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP--DAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV  238 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p--~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl  238 (412)
                      ||+||+++|.||+|||+|.|++..|.+|++++++.|.+++|  ++++|++|||+|    ++++++++.+ ++|++||||+
T Consensus       200 aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~apgiP~~rVig~  275 (452)
T cd05295         200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAPSIPRKNIIAV  275 (452)
T ss_pred             CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999998  999999999999    5677777777 9999999999


Q ss_pred             cccchHHHHHHHHHHcCCCCCCe-eeeEEcccCCcccccccccCCC----------------CCCC-ChHHH--HHHHHH
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGITILPLLSKTMP----------------SVSF-TDEEV--GDLTVR  298 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V-~~~ViG~hgg~~~vp~~S~~~p----------------~~~~-~~~~~--~~l~~~  298 (412)
                      +.||++|++++||+++|+++++| +++|||+|| +++||+||+++.                ..++ .+++|  +++.+.
T Consensus       276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~  354 (452)
T cd05295         276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT  354 (452)
T ss_pred             cchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence            77889999999999999999999 568999997 699999999843                2222 34443  678888


Q ss_pred             HhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCC
Q 015172          299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSD  375 (412)
Q Consensus       299 v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~  375 (412)
                      ++++++   ++|   |+|+||+|.|+++++++|+.|.+ ++.++||+++.. +|  +++.|||+||++|++|++.+.+  
T Consensus       355 v~~rg~---~rk---gsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~--  425 (452)
T cd05295         355 LKSLSS---SLN---HEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD--  425 (452)
T ss_pred             HHHHHH---hcc---CChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC--
Confidence            998887   444   89999999999999999999853 247999986544 34  5778999999999999999998  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015172          376 LQGLTEYEQKALEALKPELKASIEKG  401 (412)
Q Consensus       376 l~~Lse~E~~~L~~sa~~L~~~i~~~  401 (412)
                       ++|+++|+++|++|+++|.++.+.+
T Consensus       426 -L~L~e~E~~kL~~S~~eL~~E~~~~  450 (452)
T cd05295         426 -LELSEILREVLKRITSDLIQEKLVA  450 (452)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence             7899999999999999999887664

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=8e-49  Score=380.25  Aligned_cols=255  Identities=32%  Similarity=0.485  Sum_probs=228.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCC--CCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSP--LVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~g--l~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |+||||+|.||.++++.++..+  ...+|+|+|+++  +++.++|+.|.........++.++|++++++|||+||+++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            6899988999999999999999  778999999987  678889999876443122455677866689999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA  251 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la  251 (412)
                      |+++|++|.|++.+|++++++++++++++||++|+|++|||+|    ++++++++.+|+|++||||+|.||+.|+++++|
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la  156 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA  156 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    678888999999999999995599999999999


Q ss_pred             HHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHH
Q 015172          252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS  331 (412)
Q Consensus       252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ai  331 (412)
                      +++++++++|+++|+|+|| ++++|+||+++                                     +|.++++++++|
T Consensus       157 ~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~-------------------------------------~a~~~~~ii~ai  198 (263)
T cd00650         157 EKLGVDPDDVKVYILGEHG-GSQVPDWSTVR-------------------------------------IATSIADLIRSL  198 (263)
T ss_pred             HHhCCCccceEEEEEEcCC-CceEeccccch-------------------------------------HHHHHHHHHHHH
Confidence            9999999999999999998 58999999854                                     688999999999


Q ss_pred             HhccCCCCCeEEeeeecCC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172          332 LRALDGDGDVYECVFVESN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI  398 (412)
Q Consensus       332 l~~~~g~~~v~~~s~v~~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i  398 (412)
                      +.+   ++.++|++....+ |  +++.|||+||+||++|++++++   ++|+++|+++|+++++.++..+
T Consensus       199 ~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~---~~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         199 LND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIE---VGLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEec---CCCCHHHHHHHHHHHHHHHHHh
Confidence            998   4678999876554 4  4778999999999999999999   6899999999999999998765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.5e-39  Score=302.75  Aligned_cols=301  Identities=24%  Similarity=0.367  Sum_probs=258.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-------CCCCeEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-------PLVSALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-------gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~  161 (412)
                      +.+|.|.||+|.+|.++.+.++..       ++  .++|.|+.+    ++|..++|.++..|. +..+..++|..++|+|
T Consensus         4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPi--iL~lLdi~~~~~~LegV~mELqD~a~Pl-L~~Vvattd~~~afkd   80 (332)
T KOG1496|consen    4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPI--ILHLLDIPPMMSVLEGVKMELQDCALPL-LKGVVATTDEVEAFKD   80 (332)
T ss_pred             ceEEEeecccchhhHHHHHHHcCceeecCCCce--EEEeeCCchHHHHHHHHHHHHHhhhhhH-HHhhhcccChhhhhcc
Confidence            468999999999999999999853       44  899999987    689999999998875 3444567888899999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      .|+.|...+.||++||+|.|++..|.+|++.-...+++|+ |+..++|+.||.+....|+.   +.+..+|.++|-.+|.
T Consensus        81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR  157 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR  157 (332)
T ss_pred             CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence            9999999999999999999999999999999999999999 99999999999998776654   5566799999999999


Q ss_pred             cchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC--------CCC-CChHHH--HHHHHHHhhccchhhhc
Q 015172          241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP--------SVS-FTDEEV--GDLTVRIQNAGTEVVEA  309 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p--------~~~-~~~~~~--~~l~~~v~~~g~eii~~  309 (412)
                      ||.+|+...||.++|++.++|...+||+||..+++|+..+++.        ..+ ++++.|  .++++.||++|..+|++
T Consensus       158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             hchhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            9999999999999999999998665555555899999998863        222 577777  68999999999999997


Q ss_pred             ccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecC---CCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          310 KAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES---NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       310 K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~---~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                      +.  -|+.+|.|.++++.++.|+.+.+ +...++.++...   ++|++..||+||.+ ++|-|++++  .++++++-+++
T Consensus       238 rk--~SSA~SaA~aacDhi~dw~~gTp-eG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVq--gl~iddf~r~k  311 (332)
T KOG1496|consen  238 RK--LSSAMSAAKAACDHIRDWWFGTP-EGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQ--GLPIDDFSREK  311 (332)
T ss_pred             hh--hhhhhhHHHhHhhhhhheecCCC-CccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEc--CcchhHHHHHh
Confidence            62  58999999999999999999975 223333333322   25788899999999 889999998  47999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 015172          387 LEALKPELKASIEKGVAFA  405 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~~~~  405 (412)
                      ++.++++|.++.+.+...+
T Consensus       312 m~~t~~EL~eEkd~a~~~l  330 (332)
T KOG1496|consen  312 MDLTAKELKEEKDLAYSCL  330 (332)
T ss_pred             hhhhHHHHHHhHHHHHHhh
Confidence            9999999999998887655

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.7e-32  Score=249.30  Aligned_cols=159  Identities=35%  Similarity=0.489  Sum_probs=142.6

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CC-------CCCChHHHHHHHHHHhhccchhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PS-------VSFTDEEVGDLTVRIQNAGTEVV  307 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~-------~~~~~~~~~~l~~~v~~~g~eii  307 (412)
                      |.||++|++++||+++|++|++|+++|||||| +++||+||+++    |.       ..++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHG-DSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSS-TTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCC-cceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            67999999999999999999999999999997 69999999986    32       34677889999999999999999


Q ss_pred             hcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C--CCC-CceeeeEEEcCCceEEeecCCCCCCCHHH
Q 015172          308 EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L--TEL-PFFASRVKLGRNGVESLISSDLQGLTEYE  383 (412)
Q Consensus       308 ~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i--~~~-~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E  383 (412)
                      ++|.  |+++||+|+++++++++|+.+.   +.++|++.+..+ |  ++. +|||+||+||++|++++++  +++|+++|
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E  152 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDE---RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVE--DLPLSEEE  152 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEEC--SBSSTHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhcc---cccccceeccccccCcccccceecceEEEcCCeeEEEeC--CCCCCHHH
Confidence            9994  7999999999999999999995   679999865443 4  343 8999999999999999998  36899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 015172          384 QKALEALKPELKASIEKGVAFA  405 (412)
Q Consensus       384 ~~~L~~sa~~L~~~i~~~~~~~  405 (412)
                      +++|++|++.|++.++++++|+
T Consensus       153 ~~~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  153 QEKLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999885

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.97  E-value=1.4e-31  Score=236.77  Aligned_cols=139  Identities=40%  Similarity=0.662  Sum_probs=126.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||+|.||+++|+.|+++++++||+|+|+++  ++|+++||.|..+...........+|+ +++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYE-ALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGG-GGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccc-ccccccEEEEeccc
Confidence            799999998999999999999999999999999996  799999999987554333333346776 79999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |++||++|.|++..|++++++++++|.+++|+++++++|||+|    ++++++++.+++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999    7799999999999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.96  E-value=2.4e-27  Score=244.73  Aligned_cols=280  Identities=15%  Similarity=0.139  Sum_probs=194.7

Q ss_pred             CceEEEEcCCCCcHHHHHH--HHH-hCCCCC-eEEEEecCc--hh-hhhhhhcccC--CCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLAL--LIK-MSPLVS-ALHLYDVMN--VK-GVAADLSHCN--TPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~--~l~-~~gl~~-ev~L~Di~~--~~-g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      ++||+|||| |+||.+.++  .++ ..++.+ ||+|+|+++  ++ +... +.+..  ..... .+..|+|+.++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~-~i~~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASA-KITATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCe-EEEEECCHHHHhCCCC
Confidence            479999998 999999887  555 345554 999999997  22 2222 33321  11222 4556789777999999


Q ss_pred             EEEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHH
Q 015172          164 VVVIPAGVP-RKPG--------------MTRDDL--------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA  220 (412)
Q Consensus       164 iVIiaag~p-~k~g--------------~~r~dl--------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~  220 (412)
                      +||++++++ ++++              ++|.|+        ..+|++++++++++|+++||+||+|++|||++    ++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv  153 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN  153 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence            999999987 5556              667788        89999999999999999999999999999999    77


Q ss_pred             HHHHHHhCCCCCCCeEecc--ccchHHHHHHHHHHcCCCCCCeeeeEEcccC----------Cccccccccc--------
Q 015172          221 AEVLKQKGVYDPKKLFGVT--TLDVVRANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPLLSK--------  280 (412)
Q Consensus       221 t~i~~~~sg~~~~kviGlt--~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~~S~--------  280 (412)
                      ++.++   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.|-||          |.+.+|.+-.        
T Consensus       154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~  227 (431)
T PRK15076        154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR  227 (431)
T ss_pred             HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence            88777   47889999997  37765   78999999999999999999987          5566663211        


Q ss_pred             -CC-------------CC-------C--C-C----ChHHHHHHH----HHHh------hccchhh-hcccCCCchh--hh
Q 015172          281 -TM-------------PS-------V--S-F----TDEEVGDLT----VRIQ------NAGTEVV-EAKAGAGSAT--LS  319 (412)
Q Consensus       281 -~~-------------p~-------~--~-~----~~~~~~~l~----~~v~------~~g~eii-~~K~g~gst~--~s  319 (412)
                       ..             |.       .  . +    .++..+++.    +..+      ....+.+ +...  |.+.  -.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  305 (431)
T PRK15076        228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEIKR  305 (431)
T ss_pred             hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCcccccc
Confidence             00             11       0  0 1    122222111    1111      0001111 1111  2111  01


Q ss_pred             HHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          320 MAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       320 ~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      -+-.+++++++|.+|   ++.++.+.+.+.+    +|++.++-+||.++++|+..+.-   .+|++..+.+++.-+..
T Consensus       306 ~~e~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~---g~lP~~~~~l~~~~~~~  377 (431)
T PRK15076        306 SREYASTIIEAIETG---EPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV---GDLPPQLAALNRTNINV  377 (431)
T ss_pred             chHHHHHHHHHHhcC---CceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec---CCCCHHHHHHHHHHHHH
Confidence            234689999999988   3556666665554    46777899999999999999866   68999888877664443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.94  E-value=4.4e-25  Score=227.00  Aligned_cols=277  Identities=19%  Similarity=0.260  Sum_probs=191.1

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHhC-C-C-CCeEEEEecC-c-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQ-PLALLIKMS-P-L-VSALHLYDVM-N-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~-~iA~~l~~~-g-l-~~ev~L~Di~-~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      |||+|||| |+.-. .+...++.. . + .++|+|+|++ + ..    ..+..+..... ..+ .+..|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~-~v~~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPI-KVHLTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCe-EEEEeCCHHHHhCCCC
Confidence            69999999 87633 233344442 2 3 3799999999 5 11    12233333221 123 3456889999999999


Q ss_pred             EEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172          164 VVVIPAGVPRKPGMTRDDL--------------------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV  223 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i  223 (412)
                      +||+++++++.+++++++.                    ..+|++++++++++|+++|||||+|++|||++    +++++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            9999999988887777663                    56889999999999999999999999999999    78998


Q ss_pred             HHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-ccC---------Cccccccccc-------------
Q 015172          224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-GHA---------GITILPLLSK-------------  280 (412)
Q Consensus       224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-~hg---------g~~~vp~~S~-------------  280 (412)
                      +++.+   +.||||+|+.+ .|+++++|+.+|+++++|+++|+| +|-         |.+.+|.+-.             
T Consensus       154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~  229 (419)
T cd05296         154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL  229 (419)
T ss_pred             HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence            88875   88999999874 899999999999999999999999 552         5667772110             


Q ss_pred             ----------CCCCCC----C-ChHHHH------------------HHHHHHhhcc----chhhhcccCCCchhhhHHHH
Q 015172          281 ----------TMPSVS----F-TDEEVG------------------DLTVRIQNAG----TEVVEAKAGAGSATLSMAYA  323 (412)
Q Consensus       281 ----------~~p~~~----~-~~~~~~------------------~l~~~v~~~g----~eii~~K~g~gst~~s~A~a  323 (412)
                                ..|..-    + .++-++                  ++.+..++..    .+-+..+   +.+.|+  -.
T Consensus       230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r---~g~~y~--e~  304 (419)
T cd05296         230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKR---GGAGYS--EA  304 (419)
T ss_pred             hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhh---cCcchH--HH
Confidence                      012110    0 111111                  1111111110    0111112   112233  47


Q ss_pred             HHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          324 AARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       324 ~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      +++++++|+.+   ++.++.+.+.+.+    +|++.++-+||.++++|+..+--   .+|++....+++.-..
T Consensus       305 a~~ii~ai~~~---~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v---g~lP~~~~~l~~~~~~  371 (419)
T cd05296         305 ALALISAIYND---KGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV---GPLPPAILGLIQQVKA  371 (419)
T ss_pred             HHHHHHHHhcC---CCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC---CCCCHHHHHHHHHHHH
Confidence            88999999987   3455555555544    46677899999999999999755   6899888777665433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.94  E-value=8.7e-25  Score=225.19  Aligned_cols=278  Identities=19%  Similarity=0.231  Sum_probs=182.3

Q ss_pred             ceEEEEcCCCCc-HHHHHHHHHhCC--C-CCeEEEEecCc-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           94 FKVAVLGAAGGI-GQPLALLIKMSP--L-VSALHLYDVMN-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~v-G~~iA~~l~~~g--l-~~ev~L~Di~~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      |||+|||| |+. .-.+...++...  + .+||+|+|+++ ..    ..+..+.+... ..+ .+..|+|+++||+|||+
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-~~~-~v~~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-ADI-KFEKTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-CCe-EEEEeCCHHHHhCCCCE
Confidence            69999999 865 112333444433  3 37999999997 11    22333333221 123 34568999999999999


Q ss_pred             EEEcCCC------------CCCCCCc--------hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHH
Q 015172          165 VVIPAGV------------PRKPGMT--------RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVL  224 (412)
Q Consensus       165 VIiaag~------------p~k~g~~--------r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~  224 (412)
                      ||.+..+            |.+.|..        -.-...+|++++++++++|+++||+||+|++|||++    ++|+++
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a~  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEAV  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHHH
Confidence            9998543            2233321        123356999999999999999999999999999999    789989


Q ss_pred             HHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-ccC---------Ccccccccc---------------
Q 015172          225 KQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-GHA---------GITILPLLS---------------  279 (412)
Q Consensus       225 ~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-~hg---------g~~~vp~~S---------------  279 (412)
                      ++.  .|+.||||+|+. +.|+++++|+.+|+++++|+++++| +|+         |.+..|.+-               
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~  230 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGIWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP  230 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeEeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence            888  478999999877 8999999999999999999999999 785         222222110               


Q ss_pred             ---------c-------CCCCCC---C--C----hH-------------H---H-HHHHHHHhhc---cch-hhhcccCC
Q 015172          280 ---------K-------TMPSVS---F--T----DE-------------E---V-GDLTVRIQNA---GTE-VVEAKAGA  313 (412)
Q Consensus       280 ---------~-------~~p~~~---~--~----~~-------------~---~-~~l~~~v~~~---g~e-ii~~K~g~  313 (412)
                               .       ..|...   |  .    ++             +   + .++.+..+..   ... -...+   
T Consensus       231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r---  307 (425)
T cd05197         231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKR---  307 (425)
T ss_pred             ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhc---
Confidence                     0       001110   0  0    00             0   0 0111111110   000 00001   


Q ss_pred             CchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHH
Q 015172          314 GSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEA  389 (412)
Q Consensus       314 gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~  389 (412)
                      +...+  +-.+++++++|++|.   +.++.+.+.+.+    +|++.++-+||.++++|+..+--   .+|++.-..+++.
T Consensus       308 ~~~~~--~e~a~~ii~ai~~~~---~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v---g~lp~~~~~Li~~  379 (425)
T cd05197         308 GGRKY--SEAAIPLIRALLNDN---GARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV---GPLDRFVKGLLRQ  379 (425)
T ss_pred             CCccc--HHHHHHHHHHHHcCC---CeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc---CCCCHHHHHHHHH
Confidence            12223  347889999999983   556655555544    46777999999999999999765   6788877666655


Q ss_pred             HHH
Q 015172          390 LKP  392 (412)
Q Consensus       390 sa~  392 (412)
                      -..
T Consensus       380 ~~~  382 (425)
T cd05197         380 RKM  382 (425)
T ss_pred             HHH
Confidence            433

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.93  E-value=6.3e-24  Score=219.25  Aligned_cols=284  Identities=18%  Similarity=0.251  Sum_probs=188.2

Q ss_pred             ceEEEEcCCCCc-HHHHHHHHHhC--CC-CCeEEEEecCc-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           94 FKVAVLGAAGGI-GQPLALLIKMS--PL-VSALHLYDVMN-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~v-G~~iA~~l~~~--gl-~~ev~L~Di~~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      |||+|||| |+. +-.+...++..  .+ .++|+|+||++ ..    ..+..+.+.. ...+ .+..|+|+++|++|||+
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~-~v~~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEI-KFVYTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCe-EEEEECCHHHHhCCCCE
Confidence            79999999 875 12233445444  23 37999999998 22    2233333322 1223 35568999999999999


Q ss_pred             EEEcCCC------------CCCCCC---c-----hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHH
Q 015172          165 VVIPAGV------------PRKPGM---T-----RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVL  224 (412)
Q Consensus       165 VIiaag~------------p~k~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~  224 (412)
                      ||.+..+            |.|.|.   +     -.-...+|++++.+++++|+++|||||+|++|||++    ++++++
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~~  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEAL  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHH
Confidence            9998543            223332   1     123467999999999999999999999999999999    778888


Q ss_pred             HHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC-----------Cccccccccc---C---------
Q 015172          225 KQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA-----------GITILPLLSK---T---------  281 (412)
Q Consensus       225 ~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg-----------g~~~vp~~S~---~---------  281 (412)
                      ++.  +|+.||||+|+-.. -++..+|+.+|+++++|+..+.|-||           |.+.+|.+-.   .         
T Consensus       154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~  230 (437)
T cd05298         154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD  230 (437)
T ss_pred             HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence            887  78899999998654 46888999999999999999999876           4445553221   0         


Q ss_pred             -------------------------CCCC--C--CChHH-HHH--------------HHHHHhhccchhhhcccCCCchh
Q 015172          282 -------------------------MPSV--S--FTDEE-VGD--------------LTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       282 -------------------------~p~~--~--~~~~~-~~~--------------l~~~v~~~g~eii~~K~g~gst~  317 (412)
                                               .|..  .  +..++ .++              ..+++.+.-.++...+.-.....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~  310 (437)
T cd05298         231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF  310 (437)
T ss_pred             ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence                                     0000  0  00000 011              11111000000000000000011


Q ss_pred             h--hHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          318 L--SMAYAAARFVESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       318 ~--s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      .  .-|.++++++++|+.|   ++.+++++..+.+ |   +++.++++||+||++|+.++.-   .+|++....+++.-+
T Consensus       311 ~~~~ya~~a~~ii~aI~~d---~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v---g~lP~~~~~l~~~~~  384 (437)
T cd05298         311 HVDVHGEYIVDLAASIAYN---TKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV---GKIPTFYKGLMEQQV  384 (437)
T ss_pred             hccchHHHHHHHHHHHHcC---CCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc---CCCCHHHHHHHHHHH
Confidence            1  1466899999999998   5689999877654 3   5677999999999999999865   689998887766544


Q ss_pred             HH
Q 015172          392 PE  393 (412)
Q Consensus       392 ~~  393 (412)
                      ..
T Consensus       385 ~~  386 (437)
T cd05298         385 AY  386 (437)
T ss_pred             HH
Confidence            43

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.92  E-value=1.7e-23  Score=215.96  Aligned_cols=279  Identities=16%  Similarity=0.128  Sum_probs=192.9

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHHhC-CCC-CeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLAL--LIKMS-PLV-SALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~--~l~~~-gl~-~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      +||+|||| |.+|.+.++  .++.. .+. .+|+|+|+++  .+....++.+..  .... ..+..|+|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~-~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAP-LKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCC-eEEEEeCCHHHHhcCCCEE
Confidence            58999998 999999887  35433 333 3999999997  333333333221  1111 2455678988899999999


Q ss_pred             EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172          166 VIPAGVPRKPGMTR----------------------DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV  223 (412)
Q Consensus       166 Iiaag~p~k~g~~r----------------------~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i  223 (412)
                      |++++.+..++.++                      .....+|..++.++++.++++||++|++++|||++    ++|++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~  154 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA  154 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence            99998777666555                      34567899999999999999999999999999999    78999


Q ss_pred             HHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC----------Cccccccccc-----------CC
Q 015172          224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPLLSK-----------TM  282 (412)
Q Consensus       224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~~S~-----------~~  282 (412)
                      +++.++   .|+||+|+- +.|+++.+|+.+++++++|+++++|-||          |.+.+|.+-.           ..
T Consensus       155 ~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~  230 (423)
T cd05297         155 LNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS  230 (423)
T ss_pred             HHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence            988854   799999865 7889999999999999999999999987          5666663221           11


Q ss_pred             -------------CCC------C------CChHHHHH------------------HHHHHhhccc-hh--hhcccCCCch
Q 015172          283 -------------PSV------S------FTDEEVGD------------------LTVRIQNAGT-EV--VEAKAGAGSA  316 (412)
Q Consensus       283 -------------p~~------~------~~~~~~~~------------------l~~~v~~~g~-ei--i~~K~g~gst  316 (412)
                                   |..      +      ..++....                  +......... +.  .+..   +..
T Consensus       231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  307 (423)
T cd05297         231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELD---PVK  307 (423)
T ss_pred             cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhcc---ccc
Confidence                         110      0      01011110                  1111110000 00  0000   111


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      .+  +-.+++++++|.++   ++.++.+.+-+.+    +|++.++-+||.|+++|+..+--   .+|++....+++.-..
T Consensus       308 ~~--~e~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~---g~lp~~~~~l~~~~~~  379 (423)
T cd05297         308 RS--GEYASPIIEALVTG---KPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI---GPLPPQLAALIRPRIN  379 (423)
T ss_pred             cc--hHHHHHHHHHHhcC---CceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc---CCCCHHHHHHHHHHHH
Confidence            12  23588999999987   4566666655554    46777999999999999999865   7898887777665444


Q ss_pred             H
Q 015172          393 E  393 (412)
Q Consensus       393 ~  393 (412)
                      .
T Consensus       380 ~  380 (423)
T cd05297         380 V  380 (423)
T ss_pred             H
Confidence            3

linked to 3D####ucture

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2e-21  Score=197.76  Aligned_cols=291  Identities=20%  Similarity=0.259  Sum_probs=191.8

Q ss_pred             CceEEEEcCCCCcHHHHHH--HHHhC-CC-CCeEEEEecCc-hhh----hhhhhccc-CCCCceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLAL--LIKMS-PL-VSALHLYDVMN-VKG----VAADLSHC-NTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~--~l~~~-gl-~~ev~L~Di~~-~~g----~~~dL~~~-~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      ..||+|||| |+.+.+--.  .|... .+ ..+|.|+|+++ ...    .+..+.+. +.+  + .+..|+|+++||+||
T Consensus         3 ~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~-kv~~ttd~~eAl~gA   78 (442)
T COG1486           3 KFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--V-KVEATTDRREALEGA   78 (442)
T ss_pred             cceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--e-EEEEecCHHHHhcCC
Confidence            469999999 988766543  23332 22 36999999997 222    22333332 222  3 345678999999999


Q ss_pred             cEEEEcCCC------------CCCCCCchh--------hHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHH
Q 015172          163 NVVVIPAGV------------PRKPGMTRD--------DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAE  222 (412)
Q Consensus       163 DiVIiaag~------------p~k~g~~r~--------dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~  222 (412)
                      |+||.+..+            |.|.|-.+.        -.-.++++++-++++.|+++||+||++++|||+.    ++|+
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTe  154 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTE  154 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHHH
Confidence            999998532            444443221        2246899999999999999999999999999998    7899


Q ss_pred             HHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCC-CCeeeeEEcccC----------CcccccccccC----------
Q 015172          223 VLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL-IDVDVPVVGGHA----------GITILPLLSKT----------  281 (412)
Q Consensus       223 i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~-~~V~~~ViG~hg----------g~~~vp~~S~~----------  281 (412)
                      .+.+.  +|.-|+||+|+... -....+|+.|++++ ++++..+.|-||          |.+.+|.+...          
T Consensus       155 Av~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~  231 (442)
T COG1486         155 AVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP  231 (442)
T ss_pred             HHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence            98887  56449999998653 56889999999975 999999999887          33333322110          


Q ss_pred             ---------------------CCCCC----------------------CChHHHHHHHHHHhhccch-hhhccc----CC
Q 015172          282 ---------------------MPSVS----------------------FTDEEVGDLTVRIQNAGTE-VVEAKA----GA  313 (412)
Q Consensus       282 ---------------------~p~~~----------------------~~~~~~~~l~~~v~~~g~e-ii~~K~----g~  313 (412)
                                           .|...                      ...+++.+..++....-.+ .+..|.    ..
T Consensus       232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~  311 (442)
T COG1486         232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR  311 (442)
T ss_pred             ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence                                 01000                      0111211111111000000 000000    00


Q ss_pred             Cch--hhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          314 GSA--TLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       314 gst--~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                      +.+  .++  -.+++|++||++|   ++.++.+.+-+++    +|++.++-+||+++++|+..+..   ..|++.-+..+
T Consensus       312 ~~~~~~~~--e~a~~ii~Ai~~~---~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~---g~lP~~~~~l~  383 (442)
T COG1486         312 IGAGKYSS--EYASNIINAIENN---KPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV---GDLPEFVKGLM  383 (442)
T ss_pred             CCcccccH--HHHHHHHHHHhcC---CceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc---CCCCHHHHHHH
Confidence            112  333  3788999999998   4566666655554    57778999999999999999887   89999999988


Q ss_pred             HHHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKGV  402 (412)
Q Consensus       388 ~~sa~~L~~~i~~~~  402 (412)
                      +..+..-+-.++.++
T Consensus       384 ~~~i~~e~l~veA~~  398 (442)
T COG1486         384 HTNINVEELTVEAAL  398 (442)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877665554454443

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.74  E-value=2.9e-17  Score=150.90  Aligned_cols=152  Identities=21%  Similarity=0.285  Sum_probs=106.0

Q ss_pred             eEEEEcCCCCcHHHHHH--HHHhC-CC-CCeEEEEecCc-h----hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           95 KVAVLGAAGGIGQPLAL--LIKMS-PL-VSALHLYDVMN-V----KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~--~l~~~-gl-~~ev~L~Di~~-~----~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ||+|||| |++-.+...  .+... .+ .+||+|+|+|+ .    ...+..+..... ..+ .+..|+|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~~~-~v~~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-ADL-KVEATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-TSS-EEEEESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-CCe-EEEEeCCHHHHhCCCCEE
Confidence            8999999 988666432  33333 33 25999999997 1    233333433321 223 245679999999999999


Q ss_pred             EEcCCC------------CCCCCCch----------hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172          166 VIPAGV------------PRKPGMTR----------DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV  223 (412)
Q Consensus       166 Iiaag~------------p~k~g~~r----------~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i  223 (412)
                      |.+..+            |.+.|..-          .-...++++++.+++++|+++|||||++|+|||+.    ++++.
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a  153 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA  153 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence            998653            55555321          23457999999999999999999999999999998    77888


Q ss_pred             HHHhCCCCCCCeEeccccchHHHHHHHHHHcCC
Q 015172          224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNL  256 (412)
Q Consensus       224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v  256 (412)
                      +.+.  ++..|++|+|+-. .-+...+|+.||+
T Consensus       154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence            8877  5668999999865 3567888888874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.74  E-value=6.4e-18  Score=184.68  Aligned_cols=155  Identities=20%  Similarity=0.212  Sum_probs=123.8

Q ss_pred             CChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhh
Q 015172           61 LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAA  135 (412)
Q Consensus        61 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~  135 (412)
                      ...|++++||++||..++.|+........+++.+||+|||| |.||.+||+.++..|+  +|+|+|+++     +...+.
T Consensus       281 ~~s~~a~~l~~~ff~~r~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~  357 (714)
T TIGR02437       281 AKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAA  357 (714)
T ss_pred             hCCHHHHHHHHHHhhhHhhcCCCCCCCCCccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHH
Confidence            45688999999999988887654211356778899999998 9999999999999999  999999986     122222


Q ss_pred             hhccc----C--C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCe
Q 015172          136 DLSHC----N--T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDA  204 (412)
Q Consensus       136 dL~~~----~--~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a  204 (412)
                      ++.+.    .  +    ...+..+++++|++ ++++||+||++              +.||+++++++..+++++| |++
T Consensus       358 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~  422 (714)
T TIGR02437       358 KLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDNVDIVVEA--------------VVENPKVKAAVLAEVEQHVREDA  422 (714)
T ss_pred             HHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcCCCEEEEc--------------CcccHHHHHHHHHHHHhhCCCCc
Confidence            22211    1  1    12245677788996 79999999999              7999999999999999999 799


Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          205 FIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       205 iviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      |+  +||+++  +|| ++++...  -+|+||+|++.
T Consensus       423 il--asnTS~--l~i-~~ia~~~--~~p~r~ig~Hf  451 (714)
T TIGR02437       423 IL--ASNTST--ISI-SLLAKAL--KRPENFCGMHF  451 (714)
T ss_pred             EE--EECCCC--CCH-HHHHhhc--CCcccEEEEec
Confidence            98  999999  666 8888776  57999999964

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.73  E-value=9e-18  Score=183.99  Aligned_cols=151  Identities=19%  Similarity=0.229  Sum_probs=121.4

Q ss_pred             ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhh
Q 015172           62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAAD  136 (412)
Q Consensus        62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~d  136 (412)
                      ..|++++||++||..++.|+...  ...+++..||+|||| |.||.+||+.++..|+  +|+|+|+++     +.....+
T Consensus       306 ~s~~a~al~~~f~~~~~~~~~~~--~~~~~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~  380 (737)
T TIGR02441       306 MTFESKALIGLFHGQTDCKKNKF--GKPQRPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFK  380 (737)
T ss_pred             CCHHHHHHHHHHHHHHHccCCCC--CCCCCcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHH
Confidence            56889999999999888876542  234567789999998 9999999999999999  999999987     1222222


Q ss_pred             hccc-----C-C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeE
Q 015172          137 LSHC-----N-T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAF  205 (412)
Q Consensus       137 L~~~-----~-~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~ai  205 (412)
                      ..+.     . +    ...+..+++++||+ ++++||+||++              +.||+++++++..+++++| |++|
T Consensus       381 ~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEA--------------v~E~l~~K~~vf~~l~~~~~~~~i  445 (737)
T TIGR02441       381 GLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEA--------------VFEDLSLKHKVIKEVEAVVPPHCI  445 (737)
T ss_pred             HHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhh--------------ccccHHHHHHHHHHHHhhCCCCcE
Confidence            2221     1 1    12345677788996 79999999999              7999999999999999999 7999


Q ss_pred             EEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       206 viv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      +  +||+++  +|| ++++...  -+|+||+|++
T Consensus       446 l--asNTSs--l~i-~~la~~~--~~p~r~ig~H  472 (737)
T TIGR02441       446 I--ASNTSA--LPI-KDIAAVS--SRPEKVIGMH  472 (737)
T ss_pred             E--EEcCCC--CCH-HHHHhhc--CCccceEEEe
Confidence            8  999999  566 8888776  5789999985

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.67  E-value=1.4e-16  Score=157.16  Aligned_cols=123  Identities=23%  Similarity=0.327  Sum_probs=101.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhhh----cccC------CCCceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAADL----SHCN------TPSQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~dL----~~~~------~~~~v~~i~~t~d~~~  157 (412)
                      .+||+|||| |.||++||+.++..|+  +|+|+|+++     ++....+.    ....      ....+..++.++|+. 
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence            579999998 9999999999999778  999999996     12222222    2111      123456777889997 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.||+++++++..++++++ |++|+  +||+|+  +|| ++++...  .+|+||+
T Consensus        79 ~l~~~DlVIEA--------------v~E~levK~~vf~~l~~~~~~~aIl--ASNTSs--l~i-t~ia~~~--~rper~i  137 (307)
T COG1250          79 ALKDADLVIEA--------------VVEDLELKKQVFAELEALAKPDAIL--ASNTSS--LSI-TELAEAL--KRPERFI  137 (307)
T ss_pred             HhccCCEEEEe--------------ccccHHHHHHHHHHHHhhcCCCcEE--eeccCC--CCH-HHHHHHh--CCchhEE
Confidence            89999999999              7999999999999999999 89999  999999  666 8888887  7899999


Q ss_pred             eccc
Q 015172          237 GVTT  240 (412)
Q Consensus       237 Glt~  240 (412)
                      |++.
T Consensus       138 G~HF  141 (307)
T COG1250         138 GLHF  141 (307)
T ss_pred             EEec
Confidence            9963

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.66  E-value=1.6e-15  Score=165.79  Aligned_cols=155  Identities=21%  Similarity=0.354  Sum_probs=121.3

Q ss_pred             cCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc-----hhhh
Q 015172           60 FLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN-----VKGV  133 (412)
Q Consensus        60 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~-----~~g~  133 (412)
                      -...|.+++|++.|+..++.|+...+ ...+++.+||+|||| |.||.++|+.++. .|+  +|+|+|+++     +...
T Consensus       272 ~~~s~~~~~~~~~f~~~~~~~~~~~~-~~~~~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~  347 (699)
T TIGR02440       272 LVMTPESAALRSIFFATTEMKKETGS-DATPAKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKY  347 (699)
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCC-CCCcccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHH
Confidence            34568889999999998888766332 345567789999998 9999999999985 799  999999987     1112


Q ss_pred             hhhhccc-----C-CC----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-C
Q 015172          134 AADLSHC-----N-TP----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-P  202 (412)
Q Consensus       134 ~~dL~~~-----~-~~----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p  202 (412)
                      ..+..+.     . ..    ..+..++.++|++ ++++||+||++              +.||+++++++..+++++| |
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEa--------------v~E~l~~K~~v~~~l~~~~~~  412 (699)
T TIGR02440       348 AWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFKDVDIVIEA--------------VFEDLALKHQMVKDIEQECAA  412 (699)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-HhccCCEEEEe--------------ccccHHHHHHHHHHHHhhCCC
Confidence            2221111     1 11    1234667788996 79999999999              7999999999999999999 7


Q ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       203 ~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      ++|+  +||++.  +|+ ++++...  -+|+||+|++.
T Consensus       413 ~~il--asnTS~--l~i-~~la~~~--~~p~r~~g~Hf  443 (699)
T TIGR02440       413 HTIF--ASNTSS--LPI-GQIAAAA--SRPENVIGLHY  443 (699)
T ss_pred             CcEE--EeCCCC--CCH-HHHHHhc--CCcccEEEEec
Confidence            8988  999999  566 8888776  67999999975

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.65  E-value=5e-16  Score=170.07  Aligned_cols=154  Identities=19%  Similarity=0.238  Sum_probs=120.0

Q ss_pred             ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhh
Q 015172           62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAAD  136 (412)
Q Consensus        62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~d  136 (412)
                      ..+.++++++.|+.+++.|+........+++..||+|||| |.||.+||+.++..|+  +|+|+|+++ .    .....+
T Consensus       282 ~s~d~~egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~  358 (715)
T PRK11730        282 KTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAK  358 (715)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            4567788889999988887654211245566789999998 9999999999999999  999999987 1    112212


Q ss_pred             hc----ccC--C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeE
Q 015172          137 LS----HCN--T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAF  205 (412)
Q Consensus       137 L~----~~~--~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~ai  205 (412)
                      ..    ...  .    ...+..++.++||+ ++++||+||++              +.||+++++++..+++++| |++|
T Consensus       359 ~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~i  423 (715)
T PRK11730        359 LLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFERVDVVVEA--------------VVENPKVKAAVLAEVEQKVREDTI  423 (715)
T ss_pred             HHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcCCCEEEec--------------ccCcHHHHHHHHHHHHhhCCCCcE
Confidence            11    111  1    12245667788996 79999999999              7999999999999999999 7998


Q ss_pred             EEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       206 viv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      +  +||++.  +|| ++++...  -+|+||+|++.
T Consensus       424 l--asNTSs--l~i-~~la~~~--~~p~r~~g~Hf  451 (715)
T PRK11730        424 L--ASNTST--ISI-SLLAKAL--KRPENFCGMHF  451 (715)
T ss_pred             E--EEcCCC--CCH-HHHHhhc--CCCccEEEEec
Confidence            8  999999  666 8888777  57999999863

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.63  E-value=1.3e-15  Score=166.71  Aligned_cols=153  Identities=23%  Similarity=0.377  Sum_probs=119.9

Q ss_pred             ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCc-----hhhhhh
Q 015172           62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMN-----VKGVAA  135 (412)
Q Consensus        62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~-----~~g~~~  135 (412)
                      ..+.++++++.|+..++.|+...+ ..++++.+||+|||| |.||.+||+.++ ..|+  +|+|+|+++     +.....
T Consensus       279 ~s~~~~~~~~aF~~~~~~~~~~~~-~~~~~~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~  354 (708)
T PRK11154        279 MTPESAALRSIFFATTEMKKDTGS-DAKPRPVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSW  354 (708)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCC-CCCCCcccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHH
Confidence            467788998999988777665332 345667889999998 999999999999 7799  999999986     122222


Q ss_pred             hhccc-----C-CC----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCe
Q 015172          136 DLSHC-----N-TP----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDA  204 (412)
Q Consensus       136 dL~~~-----~-~~----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a  204 (412)
                      +..+.     . +.    ..+..+++++|++ ++++||+||++              +.||+++++++..++++++ |++
T Consensus       355 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~~~~K~~v~~~le~~~~~~~  419 (708)
T PRK11154        355 DLLDKKVKRRHLKPSERDKQMALISGTTDYR-GFKHADVVIEA--------------VFEDLALKQQMVAEVEQNCAPHT  419 (708)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-HhccCCEEeec--------------ccccHHHHHHHHHHHHhhCCCCc
Confidence            22211     1 11    2234667788995 79999999999              7999999999999999999 899


Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          205 FIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       205 iviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      |+  +||++.  +|| ++++...  -+|+||+|++.
T Consensus       420 il--asnTS~--l~i-~~la~~~--~~p~r~ig~Hf  448 (708)
T PRK11154        420 IF--ASNTSS--LPI-GQIAAAA--ARPEQVIGLHY  448 (708)
T ss_pred             EE--EECCCC--CCH-HHHHHhc--CcccceEEEec
Confidence            99  999999  566 8888776  57899999963

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.56  E-value=2.5e-15  Score=138.29  Aligned_cols=122  Identities=21%  Similarity=0.372  Sum_probs=89.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhhhcc----cC-C-----CCceeeecCCCcHHhhc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAADLSH----CN-T-----PSQVLDFTGPEELASAL  159 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~dL~~----~~-~-----~~~v~~i~~t~d~~~al  159 (412)
                      ||+|||| |.||.++|..++..|+  +|+|+|.++     ......+..+    .. .     ...+..++.++|+++ +
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~   76 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE-A   76 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG-G
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH-H
Confidence            7999998 9999999999999999  999999987     1222222111    11 1     122445566789985 5


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .+||+||++              +.|++++++++..+++++| |+++|  +||++.  +++ ++++...  -+|+|++|+
T Consensus        77 ~~adlViEa--------------i~E~l~~K~~~~~~l~~~~~~~~il--asnTSs--l~i-~~la~~~--~~p~R~ig~  135 (180)
T PF02737_consen   77 VDADLVIEA--------------IPEDLELKQELFAELDEICPPDTIL--ASNTSS--LSI-SELAAAL--SRPERFIGM  135 (180)
T ss_dssp             CTESEEEE---------------S-SSHHHHHHHHHHHHCCS-TTSEE--EE--SS--S-H-HHHHTTS--STGGGEEEE
T ss_pred             hhhheehhh--------------ccccHHHHHHHHHHHHHHhCCCceE--EecCCC--CCH-HHHHhcc--CcCceEEEE
Confidence            599999999              6899999999999999999 89998  999998  556 8887776  479999999


Q ss_pred             ccc
Q 015172          239 TTL  241 (412)
Q Consensus       239 t~L  241 (412)
                      +..
T Consensus       136 Hf~  138 (180)
T PF02737_consen  136 HFF  138 (180)
T ss_dssp             EE-
T ss_pred             ecc
Confidence            863

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.43  E-value=5.2e-13  Score=131.44  Aligned_cols=125  Identities=14%  Similarity=0.286  Sum_probs=96.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhhhc----ccC-C-----CCceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAADLS----HCN-T-----PSQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~dL~----~~~-~-----~~~v~~i~~t~d~~~  157 (412)
                      +.||+|||+ |.||.++|..++..|+  +|+|||+++ .    .....+..    +.. .     ...+..++.++|++ 
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-   80 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG-   80 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-
Confidence            458999998 9999999999999999  999999987 1    11111111    111 1     01234556678995 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC--PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                      ++++||+||++              +.||.++++++..+++++|  |++++  +||++.  +|+ +.++...  .+|+|+
T Consensus        81 ~~~~~d~ViEa--------------v~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~--~~~-~~la~~~--~~~~r~  139 (286)
T PRK07819         81 DFADRQLVIEA--------------VVEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS--IPI-MKLAAAT--KRPGRV  139 (286)
T ss_pred             HhCCCCEEEEe--------------cccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHhhc--CCCccE
Confidence            79999999999              7899999999999999997  58888  999998  455 6666555  578999


Q ss_pred             Eeccccc
Q 015172          236 FGVTTLD  242 (412)
Q Consensus       236 iGlt~Ld  242 (412)
                      +|++..+
T Consensus       140 ~g~hf~~  146 (286)
T PRK07819        140 LGLHFFN  146 (286)
T ss_pred             EEEecCC
Confidence            9997654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.43  E-value=9.5e-13  Score=131.42  Aligned_cols=125  Identities=13%  Similarity=0.121  Sum_probs=95.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhh---h-hhcccC-C-CCceeeecCCCcHHhhcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVA---A-DLSHCN-T-PSQVLDFTGPEELASALK  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~---~-dL~~~~-~-~~~v~~i~~t~d~~~al~  160 (412)
                      ..+||+|||+ |.||.++|..++..|+  +|+|+|+++ .    ....   . .+.... . ......++.+++++++++
T Consensus         6 ~i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~   82 (321)
T PRK07066          6 DIKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA   82 (321)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc
Confidence            4578999998 9999999999999999  999999986 1    1111   0 111111 1 111234455678988899


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      +||+||++              +.||+++++++..++++++ |+++|  +||++.  +++ ++++...  -+|+|++|++
T Consensus        83 ~aDlViEa--------------vpE~l~vK~~lf~~l~~~~~~~aIl--aSnTS~--l~~-s~la~~~--~~p~R~~g~H  141 (321)
T PRK07066         83 DADFIQES--------------APEREALKLELHERISRAAKPDAII--ASSTSG--LLP-TDFYARA--THPERCVVGH  141 (321)
T ss_pred             CCCEEEEC--------------CcCCHHHHHHHHHHHHHhCCCCeEE--EECCCc--cCH-HHHHHhc--CCcccEEEEe
Confidence            99999999              6899999999999999999 68866  999997  334 7777666  5789999986


Q ss_pred             c
Q 015172          240 T  240 (412)
Q Consensus       240 ~  240 (412)
                      .
T Consensus       142 f  142 (321)
T PRK07066        142 P  142 (321)
T ss_pred             c
Confidence            5

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.41  E-value=8.9e-14  Score=129.75  Aligned_cols=131  Identities=17%  Similarity=0.329  Sum_probs=102.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h-----hhhhhhhcccC------CC--------CceeeecC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V-----KGVAADLSHCN------TP--------SQVLDFTG  151 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~-----~g~~~dL~~~~------~~--------~~v~~i~~  151 (412)
                      .++.|+|+|| |.||++||+.++..|+  +|.|+|.++ .     ++....+.+..      .+        ..+.++.-
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            4568999998 9999999999999999  999999997 1     22222222211      01        12344555


Q ss_pred             CCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCC
Q 015172          152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVY  230 (412)
Q Consensus       152 t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~  230 (412)
                      ++|.+++++|+|+||++              +.||+++++++.+++++.| +++++  +||+++.  .+ +.++...  .
T Consensus        87 ~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl--~l-t~ia~~~--~  145 (298)
T KOG2304|consen   87 STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL--SL-TDIASAT--Q  145 (298)
T ss_pred             cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce--eH-HHHHhhc--c
Confidence            78899999999999999              8999999999999999999 68988  9999984  33 7777776  7


Q ss_pred             CCCCeEeccc---cchHHH
Q 015172          231 DPKKLFGVTT---LDVVRA  246 (412)
Q Consensus       231 ~~~kviGlt~---Lds~R~  246 (412)
                      +|.+|.|++.   .+.+++
T Consensus       146 ~~srf~GlHFfNPvPvMKL  164 (298)
T KOG2304|consen  146 RPSRFAGLHFFNPVPVMKL  164 (298)
T ss_pred             ChhhhceeeccCCchhHHH
Confidence            8999999974   444443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.35  E-value=2.8e-12  Score=135.62  Aligned_cols=126  Identities=21%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhccc----C--C----CCceeeecCCCcHH
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHC----N--T----PSQVLDFTGPEELA  156 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~----~--~----~~~v~~i~~t~d~~  156 (412)
                      +.+||+|||+ |.||.++|..++..|+  +|+++|+++.     .....++.+.    .  +    ...+..++.+++++
T Consensus         6 ~i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~   82 (507)
T PRK08268          6 SIATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA   82 (507)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence            4578999998 9999999999999999  9999999871     1222222211    1  0    11233455678886


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                       ++++||+||++              +.+|..+++.+..++++.+ |++++  +||+++  +++ ++++...  .+|+|+
T Consensus        83 -~~~~aDlViEa--------------v~E~~~vK~~vf~~l~~~~~~~ail--asntSt--l~i-~~la~~~--~~p~r~  140 (507)
T PRK08268         83 -DLADCDLVVEA--------------IVERLDVKQALFAQLEAIVSPDCIL--ATNTSS--LSI-TAIAAAL--KHPERV  140 (507)
T ss_pred             -HhCCCCEEEEc--------------CcccHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHhhc--CCcccE
Confidence             68999999999              7899999999999999998 78888  899998  555 6776665  568999


Q ss_pred             Eeccccc
Q 015172          236 FGVTTLD  242 (412)
Q Consensus       236 iGlt~Ld  242 (412)
                      +|++.++
T Consensus       141 ~G~hff~  147 (507)
T PRK08268        141 AGLHFFN  147 (507)
T ss_pred             EEEeecC
Confidence            9987655

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.31  E-value=5.6e-12  Score=133.11  Aligned_cols=126  Identities=21%  Similarity=0.317  Sum_probs=96.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhh----hcccC-C-----CCceeeecCCCcHH
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAAD----LSHCN-T-----PSQVLDFTGPEELA  156 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~d----L~~~~-~-----~~~v~~i~~t~d~~  156 (412)
                      +.+||+|||+ |.||.++|..++..|+  +|++||+++.     .....+    +.... .     ...+..++.++|++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~   80 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH   80 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH
Confidence            3578999998 9999999999999999  9999999861     111111    11111 0     01233455678886


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                       ++++||+||++              +.++..+++++..++++++ |++++  +||+++  +++ ++++...  -+|+++
T Consensus        81 -~l~~aDlVIEa--------------v~E~~~vK~~vf~~l~~~~~~~~Il--asnTSt--l~i-~~iA~~~--~~p~r~  138 (503)
T TIGR02279        81 -ALADAGLVIEA--------------IVENLEVKKALFAQLEELCPADTII--ASNTSS--LSI-TAIAAGL--ARPERV  138 (503)
T ss_pred             -HhCCCCEEEEc--------------CcCcHHHHHHHHHHHHhhCCCCeEE--EECCCC--CCH-HHHHHhc--Ccccce
Confidence             68999999999              7899999999999999999 67776  999998  445 6777766  568899


Q ss_pred             Eeccccc
Q 015172          236 FGVTTLD  242 (412)
Q Consensus       236 iGlt~Ld  242 (412)
                      +|++.++
T Consensus       139 ~G~HFf~  145 (503)
T TIGR02279       139 AGLHFFN  145 (503)
T ss_pred             EEEeccC
Confidence            9987655

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.25  E-value=2.2e-11  Score=119.69  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=91.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhh----hhccc-----CC-C-----CceeeecCCCcHH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAA----DLSHC-----NT-P-----SQVLDFTGPEELA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~----dL~~~-----~~-~-----~~v~~i~~t~d~~  156 (412)
                      .+||+|||+ |.||.++|..++..|.  +|+++|+++ ....+.    .+.+.     .. .     .....++.++|++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~   79 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA   79 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence            469999998 9999999999999998  999999986 111111    11110     11 0     0123444568898


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                      +++++||+||++              +.++.++++++.+++++++ ++++|  ++|++..  ++ ++++...  -+|+|+
T Consensus        80 ~a~~~aDlViea--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~--~~-~~~~~~~--~~~~r~  138 (287)
T PRK08293         80 EAVKDADLVIEA--------------VPEDPEIKGDFYEELAKVAPEKTIF--ATNSSTL--LP-SQFAEAT--GRPEKF  138 (287)
T ss_pred             HHhcCCCEEEEe--------------ccCCHHHHHHHHHHHHhhCCCCCEE--EECcccC--CH-HHHHhhc--CCcccE
Confidence            889999999999              5788999999999999988 57766  7898873  34 6666654  467899


Q ss_pred             Eeccc
Q 015172          236 FGVTT  240 (412)
Q Consensus       236 iGlt~  240 (412)
                      +|++.
T Consensus       139 vg~Hf  143 (287)
T PRK08293        139 LALHF  143 (287)
T ss_pred             EEEcC
Confidence            99864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.15  E-value=1.4e-10  Score=114.13  Aligned_cols=125  Identities=16%  Similarity=0.317  Sum_probs=90.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hh---hhhhh-c----ccCCC-----CceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KG---VAADL-S----HCNTP-----SQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g---~~~dL-~----~~~~~-----~~v~~i~~t~d~~~  157 (412)
                      .+||+|||+ |.||.++|..++..|+  +|++||+++.  ..   ...+. .    ....+     ..+..++.+++++ 
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   79 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-   79 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-
Confidence            468999998 9999999999999998  9999999861  11   11111 0    11111     0112344567886 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.++..+++.+.+.+.+++ |++++  +||+++  +++ ++++...  .+|++++
T Consensus        80 ~~~~aD~Viea--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~--~~~-s~la~~~--~~~~r~~  138 (292)
T PRK07530         80 DLADCDLVIEA--------------ATEDETVKRKIFAQLCPVLKPEAIL--ATNTSS--ISI-TRLASAT--DRPERFI  138 (292)
T ss_pred             HhcCCCEEEEc--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC--CCH-HHHHhhc--CCcccEE
Confidence            68999999999              5677888899999999988 67877  689988  444 5666654  4678999


Q ss_pred             eccccc
Q 015172          237 GVTTLD  242 (412)
Q Consensus       237 Glt~Ld  242 (412)
                      |++.++
T Consensus       139 g~h~~~  144 (292)
T PRK07530        139 GIHFMN  144 (292)
T ss_pred             EeeccC
Confidence            987665

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.15  E-value=1.4e-10  Score=113.66  Aligned_cols=123  Identities=21%  Similarity=0.405  Sum_probs=90.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhh--hh----hhcccC-CC-----CceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGV--AA----DLSHCN-TP-----SQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~--~~----dL~~~~-~~-----~~v~~i~~t~d~~~  157 (412)
                      ++||+|||+ |.||.++|..++..|+  +|+++|+++.   .+.  ..    ++.+.. ..     ..+..+..++|++ 
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-   78 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-   78 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence            468999998 9999999999999998  9999999872   111  11    111111 00     0112344567886 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.++..+++++.+++++++ |++++  +||+++  +++ ++++...  -+|++++
T Consensus        79 ~~~~aDlVi~a--------------v~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~--~~~-~~la~~~--~~~~r~i  137 (282)
T PRK05808         79 DLKDADLVIEA--------------ATENMDLKKKIFAQLDEIAKPEAIL--ATNTSS--LSI-TELAAAT--KRPDKVI  137 (282)
T ss_pred             HhccCCeeeec--------------ccccHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHHhh--CCCcceE
Confidence            68999999999              6788999999999999998 68877  899988  444 5665555  3577899


Q ss_pred             eccc
Q 015172          237 GVTT  240 (412)
Q Consensus       237 Glt~  240 (412)
                      |+..
T Consensus       138 g~h~  141 (282)
T PRK05808        138 GMHF  141 (282)
T ss_pred             Eeec
Confidence            9864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.14  E-value=1.8e-10  Score=113.41  Aligned_cols=125  Identities=17%  Similarity=0.251  Sum_probs=89.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhh--------h---cccCC--C----CceeeecCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAAD--------L---SHCNT--P----SQVLDFTGPEE  154 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~d--------L---~~~~~--~----~~v~~i~~t~d  154 (412)
                      .+||+|||+ |.||.++|..++..|.  +|+++|+++. .....+        +   .+...  .    .....+..+++
T Consensus         3 i~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~   79 (291)
T PRK06035          3 IKVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS   79 (291)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence            468999998 9999999999999998  9999999871 111101        1   11110  0    01122344567


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCC
Q 015172          155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPK  233 (412)
Q Consensus       155 ~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~  233 (412)
                      ++ ++++||+||++              +.++.++++++.+++++++ |++++  +||++..  ++ ++++...  -+|+
T Consensus        80 ~~-~~~~aDlViea--------------v~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~--~~-~~la~~~--~~~~  137 (291)
T PRK06035         80 YE-SLSDADFIVEA--------------VPEKLDLKRKVFAELERNVSPETII--ASNTSGI--MI-AEIATAL--ERKD  137 (291)
T ss_pred             HH-HhCCCCEEEEc--------------CcCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC--CH-HHHHhhc--CCcc
Confidence            74 79999999999              5778899999999999998 67877  7888873  34 6666655  4588


Q ss_pred             CeEeccccc
Q 015172          234 KLFGVTTLD  242 (412)
Q Consensus       234 kviGlt~Ld  242 (412)
                      |++|++..+
T Consensus       138 r~ig~hf~~  146 (291)
T PRK06035        138 RFIGMHWFN  146 (291)
T ss_pred             cEEEEecCC
Confidence            999996543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.11  E-value=2.5e-10  Score=112.25  Aligned_cols=124  Identities=16%  Similarity=0.280  Sum_probs=89.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhcccC-----C-C----CceeeecCCCcHHhh
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHCN-----T-P----SQVLDFTGPEELASA  158 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~~-----~-~----~~v~~i~~t~d~~~a  158 (412)
                      +||+|||+ |.||.++|..++..|.  +|+++|+++.     .....++....     . .    .....++.+++++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            58999998 9999999999999998  9999999861     11111111110     0 0    011234456788788


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      +++||+||++              +.++..+++.+..++++++ |++++  ++|+++  +++ +++....  -.|.+++|
T Consensus        79 ~~~aD~Vi~a--------------vpe~~~~k~~~~~~l~~~~~~~~il--~~~tSt--~~~-~~l~~~~--~~~~r~~g  137 (288)
T PRK09260         79 VADADLVIEA--------------VPEKLELKKAVFETADAHAPAECYI--ATNTST--MSP-TEIASFT--KRPERVIA  137 (288)
T ss_pred             hcCCCEEEEe--------------ccCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC--CCH-HHHHhhc--CCcccEEE
Confidence            9999999999              5677888999999999988 67776  788887  445 5655554  45788889


Q ss_pred             cccc
Q 015172          238 VTTL  241 (412)
Q Consensus       238 lt~L  241 (412)
                      ++.+
T Consensus       138 ~h~~  141 (288)
T PRK09260        138 MHFF  141 (288)
T ss_pred             EecC
Confidence            8653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.10  E-value=3.4e-10  Score=111.62  Aligned_cols=126  Identities=20%  Similarity=0.323  Sum_probs=90.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-h----hh----hhhcccC--CC----CceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-G----VA----ADLSHCN--TP----SQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g----~~----~dL~~~~--~~----~~v~~i~~t~d~~~  157 (412)
                      .+||+|||+ |.||.++|..++..|.  +|+++|.++.. .    ..    .++.+..  ..    ..+..++.+++++ 
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   79 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-   79 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-
Confidence            468999998 9999999999999998  99999998611 1    11    1121111  00    1112234456775 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.++..+++.+..++.+++ |+++|  +||+++.  ++ +++....  -++.+++
T Consensus        80 ~~~~aD~Viea--------------v~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i--~~-~~l~~~~--~~~~r~~  138 (295)
T PLN02545         80 ELRDADFIIEA--------------IVESEDLKKKLFSELDRICKPSAIL--ASNTSSI--SI-TRLASAT--QRPQQVI  138 (295)
T ss_pred             HhCCCCEEEEc--------------CccCHHHHHHHHHHHHhhCCCCcEE--EECCCCC--CH-HHHHhhc--CCCcceE
Confidence            79999999999              6888999999999999988 67776  7999883  44 5555544  3568899


Q ss_pred             eccccch
Q 015172          237 GVTTLDV  243 (412)
Q Consensus       237 Glt~Lds  243 (412)
                      |++..+.
T Consensus       139 g~h~~~p  145 (295)
T PLN02545        139 GMHFMNP  145 (295)
T ss_pred             EEeccCC
Confidence            9866553

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=1.4e-09  Score=108.46  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=84.2

Q ss_pred             cHHHHHHHHHhCCCCCeEEEEecCch------------hhhhhhhcc----cC--C----CCceeeecCCC--cHHhhcC
Q 015172          105 IGQPLALLIKMSPLVSALHLYDVMNV------------KGVAADLSH----CN--T----PSQVLDFTGPE--ELASALK  160 (412)
Q Consensus       105 vG~~iA~~l~~~gl~~ev~L~Di~~~------------~g~~~dL~~----~~--~----~~~v~~i~~t~--d~~~al~  160 (412)
                      ||.+||..++..|+  +|+|+|+++.            .....++.+    ..  .    ...+..++.++  |+.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~   78 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA   78 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence            78999999999999  9999999861            111111111    11  1    01223444443  3667899


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      +||+||++              +.||..+++++..++++.+ |++|+  +||++.  +++ ++++...  .+|+|++|++
T Consensus        79 ~aD~ViEa--------------v~E~~~~K~~~f~~l~~~~~~~~il--aSntS~--~~~-~~la~~~--~~p~r~~g~H  137 (314)
T PRK08269         79 DADLVFEA--------------VPEVLDAKREALRWLGRHVDADAII--ASTTST--FLV-TDLQRHV--AHPERFLNAH  137 (314)
T ss_pred             cCCEEEEC--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcccc--CCH-HHHHhhc--CCcccEEEEe
Confidence            99999999              7899999999999999999 78888  999998  445 7777766  4789999986


Q ss_pred             cc
Q 015172          240 TL  241 (412)
Q Consensus       240 ~L  241 (412)
                      ..
T Consensus       138 f~  139 (314)
T PRK08269        138 WL  139 (314)
T ss_pred             cC
Confidence            54

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.95  E-value=7.2e-09  Score=104.66  Aligned_cols=114  Identities=18%  Similarity=0.209  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-----hhhcccCC------CCceeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNT------PSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-----~dL~~~~~------~~~v~~i~~t~d~~~al~~a  162 (412)
                      |||+|+|. |+||...+..+++.|+  +|+.+|+++.+-..     ..+.+...      ...-.++..|+||+++++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence            79999998 9999999999999998  99999999722111     01111110      01112366789999999999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC-eEEEEE-cCCCCCc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD-AFIHII-SNPVNST  216 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-aiviv~-TNPv~~~  216 (412)
                      |+++++.|+|.++..      ..++..+..++++|.++.+. +++++- |-|+...
T Consensus        78 dv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~  127 (414)
T COG1004          78 DVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTT  127 (414)
T ss_pred             CEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCch
Confidence            999999999988743      34578999999999998865 444333 6788743

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.92  E-value=4.9e-09  Score=103.98  Aligned_cols=124  Identities=21%  Similarity=0.357  Sum_probs=85.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhh---cccCCC-----CceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADL---SHCNTP-----SQVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL---~~~~~~-----~~v~~i~~t~d~~~al~~a  162 (412)
                      .+||+|||+ |.||..+|..++..|+  +|+++|.++.  ......+   .....+     .....+..++|+++++++|
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a   80 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGA   80 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccC
Confidence            578999998 9999999999999998  9999999761  1111111   110000     0011233456787779999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      |+||++              +.++...++++..+++.++ ++++|  +||++..  ++ +++....  ..+.+|+|++.
T Consensus        81 DlVi~a--------------v~~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~--~~-~~l~~~~--~~~~~~ig~h~  138 (311)
T PRK06130         81 DLVIEA--------------VPEKLELKRDVFARLDGLCDPDTIF--ATNTSGL--PI-TAIAQAV--TRPERFVGTHF  138 (311)
T ss_pred             CEEEEe--------------ccCcHHHHHHHHHHHHHhCCCCcEE--EECCCCC--CH-HHHHhhc--CCcccEEEEcc
Confidence            999999              5666778888888898887 56665  6888773  33 5665554  34678888853

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.91  E-value=5.9e-09  Score=110.17  Aligned_cols=123  Identities=18%  Similarity=0.255  Sum_probs=86.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhh--------hccc-CCC-CceeeecCCCcHHhhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAAD--------LSHC-NTP-SQVLDFTGPEELASALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~d--------L~~~-~~~-~~v~~i~~t~d~~~al~~  161 (412)
                      .+||+|||+ |.||.++|..++..|+  +|++||+++... ...+        +... ..+ .....+..++++++++++
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~   80 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG   80 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence            469999998 9999999999999999  999999986211 1101        0000 000 011123446788888999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      ||+||++              +.++..+++.+..++.+++ |+++|  +||+++.  ++ +++....  -++.++++.+
T Consensus        81 aD~Viea--------------vpe~~~vk~~l~~~l~~~~~~~~iI--~SsTsgi--~~-s~l~~~~--~~~~r~~~~h  138 (495)
T PRK07531         81 ADWIQES--------------VPERLDLKRRVLAEIDAAARPDALI--GSSTSGF--LP-SDLQEGM--THPERLFVAH  138 (495)
T ss_pred             CCEEEEc--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC--CH-HHHHhhc--CCcceEEEEe
Confidence            9999999              6788899999999999888 56654  8999983  33 5555444  3467777764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.84  E-value=1.1e-08  Score=101.55  Aligned_cols=125  Identities=19%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhh----h----hhcccCC------CCceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVA----A----DLSHCNT------PSQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~----~----dL~~~~~------~~~v~~i~~t~d~~~  157 (412)
                      ++||+|||+ |.||.++|..++..|+  +|++||.++. ...+    .    .+.+...      ...+..+..++|+++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~   78 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD   78 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence            579999998 9999999999999998  9999999861 1110    0    1212110      011122344678888


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.++..+++.+..++.+.++ +.++  .||++..  + +.+++...  -.+.+++
T Consensus        79 a~~~ad~Vi~a--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~ssts~~--~-~~~la~~~--~~~~~~~  137 (308)
T PRK06129         79 AVADADYVQES--------------APENLELKRALFAELDALAPPHAIL--ASSTSAL--L-ASAFTEHL--AGRERCL  137 (308)
T ss_pred             hhCCCCEEEEC--------------CcCCHHHHHHHHHHHHHhCCCcceE--EEeCCCC--C-HHHHHHhc--CCcccEE
Confidence            89999999999              46667888888888988885 5444  6888763  2 35666655  3477888


Q ss_pred             ecccc
Q 015172          237 GVTTL  241 (412)
Q Consensus       237 Glt~L  241 (412)
                      |.+..
T Consensus       138 ~~hp~  142 (308)
T PRK06129        138 VAHPI  142 (308)
T ss_pred             EEecC
Confidence            88654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.72  E-value=2.3e-08  Score=92.50  Aligned_cols=127  Identities=22%  Similarity=0.324  Sum_probs=77.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-----------Cce--eeecCCCcHHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-----------SQV--LDFTGPEELASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-----------~~v--~~i~~t~d~~~al~  160 (412)
                      |||+|+|. |++|..+|..++..|+  +|+-+|+++.+  ...+.....+           ..+  ..+..++|++++++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~--v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEK--VEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHH--HHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHH--HHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence            79999998 9999999999999999  99999999721  1111111100           001  23445688988899


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCCCcHHHHHHHHHHhCCCC
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVNSTVPIAAEVLKQKGVYD  231 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~~~~pI~t~i~~~~sg~~  231 (412)
                      +||++|++.+.|.+++.      .-|+..+.+.++.|.++. ++.+|++= |=|...+--++..++.+.++..
T Consensus        76 ~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~  142 (185)
T PF03721_consen   76 DADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK  142 (185)
T ss_dssp             H-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT
T ss_pred             ccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc
Confidence            99999999999976643      234566777777777776 55655444 5566643324445666665443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.58  E-value=7.7e-08  Score=96.06  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=84.2

Q ss_pred             cHHHHHHHHHhCCCCCeEEEEecCch--h-h--hhhh----------hcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172          105 IGQPLALLIKMSPLVSALHLYDVMNV--K-G--VAAD----------LSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus       105 vG~~iA~~l~~~gl~~ev~L~Di~~~--~-g--~~~d----------L~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||++||..+.+.|+  +++|+|.+..  . +  ....          +...........+.++.||. .++++|+||++ 
T Consensus         1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~-~~~~~dmviea-   76 (380)
T KOG1683|consen    1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYT-GFANADMVIEA-   76 (380)
T ss_pred             CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccc-cccccceeccc-
Confidence            78999999999999  9999999961  1 1  1110          11111112233456788997 79999999999 


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                                   +++|+++++++..+|++.| |++|+  .||++.  +++ .++....  -+|++++|++
T Consensus        77 -------------v~edl~Lk~~l~~~le~v~~~~~i~--gsntSs--~~~-~~isa~l--d~~e~vvg~h  127 (380)
T KOG1683|consen   77 -------------VFEDLELKHELFKSLEKVEPPKCIR--GSNTSS--LDI-NVISAGL--DRPEMVVGMH  127 (380)
T ss_pred             -------------hhhhHHHHHHHHHHHHhhcCCccee--eecccc--CCh-HHHhhcc--Cchhhhcccc
Confidence                         8999999999999999999 78988  999988  455 6665544  6799999995

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.54  E-value=3.6e-07  Score=96.05  Aligned_cols=121  Identities=14%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-----hhhcccCCCC-----ceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNTPS-----QVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-----~dL~~~~~~~-----~v~~i~~t~d~~~al~~a  162 (412)
                      +|||+|||+ |+||..+|..|+..|.--+|+.+|+++.+-..     ..+.+.....     .-..++.|+|+++++++|
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            589999998 99999999999988532289999998722111     0111111000     011245578888789999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEE-cCCCCC
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHII-SNPVNS  215 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~-TNPv~~  215 (412)
                      |+||++.++|.+++....+ -.-++..+.+.++.|.++.+ +.+|++= |-|..+
T Consensus        80 dvi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt  133 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT  133 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence            9999999999754321001 12356778888999988884 4444222 677774

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.51  E-value=2.1e-06  Score=81.22  Aligned_cols=128  Identities=23%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||++|.||..++..++..|.  +|.++|.++.  .....++.+..  ...... +..+ +..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~-~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIK-VTGA-DNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCce-EEEe-ChHHHHhcCCEEEEEC
Confidence            6899998349999999999999997  9999998762  22222222110  011111 1122 3345799999999995


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCc-------H----HHHHHHHHHhCCCCC-CCeEe
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNST-------V----PIAAEVLKQKGVYDP-KKLFG  237 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~-------~----pI~t~i~~~~sg~~~-~kviG  237 (412)
                      .                .....++++++....++.+||-++||.+.-       +    --.++.+++.  +|+ .+|+.
T Consensus        77 p----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk  138 (219)
T TIGR01915        77 P----------------WDHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA  138 (219)
T ss_pred             C----------------HHHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence            2                122344444554444456788889998720       0    0012445555  566 77876


Q ss_pred             c-cccch
Q 015172          238 V-TTLDV  243 (412)
Q Consensus       238 l-t~Lds  243 (412)
                      . .++..
T Consensus       139 a~~~~~a  145 (219)
T TIGR01915       139 AFHNLSA  145 (219)
T ss_pred             ccccCCH
Confidence            6 55553

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.47  E-value=3.6e-07  Score=82.13  Aligned_cols=97  Identities=22%  Similarity=0.347  Sum_probs=65.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC---CC-Ccee-eecCCCcHHhhcCCCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN---TP-SQVL-DFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~---~~-~~v~-~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+|||| |.+|..+|..++.+|.  +|.||+.++..-....-.+..   .+ ..+. .+..++|+++++++||+||++.
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            8999998 9999999999999998  999999986211111111111   11 1111 2234689999999999999983


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                        |              ....+++++++..+. ++.++++++
T Consensus        78 --P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   78 --P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             -----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             --c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence              2              345678888899888 566665544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.37  E-value=5.4e-06  Score=82.67  Aligned_cols=117  Identities=22%  Similarity=0.403  Sum_probs=83.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc--cC---CCC-ce-eeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH--CN---TPS-QV-LDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~--~~---~~~-~v-~~i~~t~d~~~al~~aDiV  165 (412)
                      ++||+|||+ |.-|.++|..|+.+|.  +|+||.+++..  +.++.+  ..   .+. .+ ..+..++|+++++++||+|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~--~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i   75 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEI--VAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII   75 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHH--HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence            479999998 9999999999999997  99999998621  122222  21   121 11 1344678999999999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc---CCCCCcHHHHHHHHHHhCCCCCCC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS---NPVNSTVPIAAEVLKQKGVYDPKK  234 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T---NPv~~~~pI~t~i~~~~sg~~~~k  234 (412)
                      |++.  |              ...++++++++..+. ++.+++.+|   +|.+  .-.+++++++.  +|.++
T Consensus        76 v~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t--~~l~seii~e~--l~~~~  128 (329)
T COG0240          76 VIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPET--GRLLSEIIEEE--LPDNP  128 (329)
T ss_pred             EEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCC--cchHHHHHHHH--cCCCe
Confidence            9984  3              456677777776555 688888876   3433  23568888887  55555

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.28  E-value=9.4e-06  Score=83.90  Aligned_cols=122  Identities=22%  Similarity=0.320  Sum_probs=77.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC----CC---------ceeeecCCCcHHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT----PS---------QVLDFTGPEELASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~----~~---------~v~~i~~t~d~~~al~  160 (412)
                      |||+|||. |.||..+|..++..|+  +|+.+|+++.+.  .++.....    +.         ....++.+++++++++
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKV--DKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHH--HHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            68999998 9999999999999998  999999986221  11221110    00         0011334567877899


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc-CCCCCcHHHHHHHHHH
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS-NPVNSTVPIAAEVLKQ  226 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T-NPv~~~~pI~t~i~~~  226 (412)
                      +||+||++.+.|..+..      .-++..+.+..+.+.++. ++.++++.| -|.....-+...+..+
T Consensus        76 ~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        76 DADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             hCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            99999999988865432      224556666667777665 566665543 3334322333344444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.25  E-value=7.3e-06  Score=84.29  Aligned_cols=110  Identities=22%  Similarity=0.336  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-------CCC----CceeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-------NTP----SQVLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-------~~~----~~v~~i~~t~d~~~al~~a  162 (412)
                      |||+|||. |.||..+|..++. |+  +|+.+|+++.+-  ..+...       ...    .....++.+++.+++.++|
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv--~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRV--AMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHH--HHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence            68999998 9999999987774 87  999999987221  111111       000    0011244456666778999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN  214 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~  214 (412)
                      |+||++.+.|......     ..|+..++++++.|.+..|+.++++- |-|..
T Consensus        75 d~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pg  122 (388)
T PRK15057         75 DYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVG  122 (388)
T ss_pred             CEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCc
Confidence            9999998777432221     12456666666666654466655444 45555

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.23  E-value=6.3e-06  Score=81.77  Aligned_cols=103  Identities=21%  Similarity=0.347  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCC-C-Ccee-eecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNT-P-SQVL-DFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~-~-~~v~-~i~~t~d~~~al~~aDiVIi  167 (412)
                      ||||+|||+ |.||..++..|+..|.  +|.++|.++.  .....+..+... . ..+. ....++++++.+++||+||+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~   77 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILV   77 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence            579999998 9999999999999998  9999999752  111111101000 0 0000 12224567667899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      +..              .  ..+.++.+.+.++. |+.+++..+|..+
T Consensus        78 ~v~--------------~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         78 AVP--------------S--QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             eCC--------------H--HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            942              1  23456666777665 7888888888765

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.11  E-value=6.4e-05  Score=70.58  Aligned_cols=121  Identities=23%  Similarity=0.327  Sum_probs=77.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+++|+|+ |.+|+++|..++..|+  ||.+--.+..+.   .+..+.-        .+++.+. +++.+.||+||.+.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~--------~i~~~~~-~dA~~~aDVVvLAV   68 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGP--------LITGGSN-EDAAALADVVVLAV   68 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhcc--------ccccCCh-HHHHhcCCEEEEec
Confidence            689999998 9999999999999998  998886665222   1211111        1344443 46899999999994


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCC-----cHH------HHHHHHHHhCCCCCCCeEec
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNS-----TVP------IAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~-----~~p------I~t~i~~~~sg~~~~kviGl  238 (412)
                        |          +.    -+.++.+++.....+-|+|=+|||.+.     .+.      -.+++.++.  +|..||+.-
T Consensus        69 --P----------~~----a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~--lp~akVVkA  130 (211)
T COG2085          69 --P----------FE----AIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKL--LPGAKVVKA  130 (211)
T ss_pred             --c----------HH----HHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHH--CCCcchhhh
Confidence              3          33    334455555544457788888999420     000      124555555  666677654


Q ss_pred             -cccch
Q 015172          239 -TTLDV  243 (412)
Q Consensus       239 -t~Lds  243 (412)
                       .++..
T Consensus       131 Fn~i~a  136 (211)
T COG2085         131 FNTIPA  136 (211)
T ss_pred             hcccCH
Confidence             55554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.09  E-value=1.7e-05  Score=71.57  Aligned_cols=94  Identities=18%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |+||++||. |.||..+|..|+..|+  +|+.||++..+  ..++.+..    ..   ...++++.+++||+||.+.   
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~g----~~---~~~s~~e~~~~~dvvi~~v---   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEK--AEALAEAG----AE---VADSPAEAAEQADVVILCV---   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHH--HHHHHHTT----EE---EESSHHHHHHHBSEEEE-S---
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhh--hhhhHHhh----hh---hhhhhhhHhhcccceEeec---
Confidence            689999998 9999999999999999  99999987522  12233322    21   2356778899999999983   


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHH--HHhhC-CCeEEEEEcCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEA--VADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~--i~~~~-p~aiviv~TNPv~  214 (412)
                                  .|.+.++++...  +.... ++.++|. +++++
T Consensus        66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid-~sT~~   97 (163)
T PF03446_consen   66 ------------PDDDAVEAVLFGENILAGLRPGKIIID-MSTIS   97 (163)
T ss_dssp             ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE--SS--
T ss_pred             ------------ccchhhhhhhhhhHHhhccccceEEEe-cCCcc
Confidence                        244566777776  66666 5555544 44555

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.08  E-value=2.7e-05  Score=78.09  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhh-hcccCC----CC--ceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAAD-LSHCNT----PS--QVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~d-L~~~~~----~~--~v~~i~~t~d~~~al~~aDiV  165 (412)
                      +|||+|||+ |.||..+|..++..|.  +|.++|.++......+ -.....    ..  ....+..+++++ +++++|+|
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v   77 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-ALATADLV   77 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChh-hccCCCEE
Confidence            579999998 9999999999999998  9999998642111110 000000    00  011222345664 78999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |++...+                ...++++.+.++. ++.+|+..+|..+.     .+.+++.  ++.+++++
T Consensus        78 il~vk~~----------------~~~~~~~~l~~~~~~~~iii~~~nG~~~-----~~~l~~~--~~~~~~~~  127 (341)
T PRK08229         78 LVTVKSA----------------ATADAAAALAGHARPGAVVVSFQNGVRN-----ADVLRAA--LPGATVLA  127 (341)
T ss_pred             EEEecCc----------------chHHHHHHHHhhCCCCCEEEEeCCCCCc-----HHHHHHh--CCCCcEEE
Confidence            9996322                1234455666655 67888778888762     2333444  45555544

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.02  E-value=7.8e-06  Score=77.18  Aligned_cols=103  Identities=21%  Similarity=0.326  Sum_probs=82.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----h----hhhhhhhcccC-------CCCceeeecCCCcHHh
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----V----KGVAADLSHCN-------TPSQVLDFTGPEELAS  157 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~----~g~~~dL~~~~-------~~~~v~~i~~t~d~~~  157 (412)
                      -||+|+|. |.+|+..|..++..|+  +|.||||.+     +    .....+|.+..       ....+..+++|+++.|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            48999996 9999999999999999  999999986     1    22233444332       1134567889999999


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCC
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNS  215 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~  215 (412)
                      ..++|=.|=++              +.|.+.+++++.+++.+.. |..|+  +|-++..
T Consensus        81 ~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~  123 (313)
T KOG2305|consen   81 LVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADPTTIL--ASSTSTF  123 (313)
T ss_pred             HHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCCceEE--ecccccc
Confidence            99999777777              6788999999999999988 88887  8877773

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.00  E-value=7.3e-05  Score=75.50  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc----C-CC--Cce-eeecCCCcHHhhcCCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC----N-TP--SQV-LDFTGPEELASALKGV  162 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~----~-~~--~~v-~~i~~t~d~~~al~~a  162 (412)
                      +.+|||+|||+ |.+|..+|..|+..|   ++++|..++..  ..++.+.    . .+  ..+ ..+..++|++++++++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a   78 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA   78 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence            45689999998 999999999999887   47788876521  1122211    0 11  001 1223457887789999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCc-HHHHHHHHHHhCCCCCCCe
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNST-VPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~-~pI~t~i~~~~sg~~~~kv  235 (412)
                      |+||++.-                ...++++++++..+. ++..++.++|-.+.- .-.+++++.+.  ++..++
T Consensus        79 DlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~--l~~~~~  135 (341)
T PRK12439         79 DVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV--LPGHPA  135 (341)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH--cCCCCe
Confidence            99999941                345677777777766 677888888876520 11235566654  444443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.99  E-value=7.4e-05  Score=73.28  Aligned_cols=121  Identities=19%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|.+..  .....+-..............+++.++ ++++|+||++...
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k~   76 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVKA   76 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEeccc
Confidence            68999998 9999999999999997  9999998541  111100000000000111122455654 5999999999431


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe-cccc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG-VTTL  241 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG-lt~L  241 (412)
                      .                -..++++.+..+. ++.+|+...|..+.     .+.+.+.  ++++++++ ++..
T Consensus        77 ~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~-----~~~l~~~--~~~~~i~~~~~~~  125 (304)
T PRK06522         77 Y----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH-----LEELAAY--IGPERVLGGVVTH  125 (304)
T ss_pred             c----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHHh--cCcccEEEEEEEE
Confidence            1                1344555565554 67888888998873     2333443  55666664 3443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.95  E-value=8.5e-05  Score=73.09  Aligned_cols=122  Identities=14%  Similarity=0.187  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhh-hh--cccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAA-DL--SHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~-dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|..+ ...... .+  .......... ....+++++..+++|+||++.
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVP-GPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEec-ceeecCHHHccCCCCEEEEEe
Confidence            68999998 9999999999999998  999999822 111110 01  1100001011 111345665568999999995


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe-ccccc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG-VTTLD  242 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG-lt~Ld  242 (412)
                      ..+                -..++.+.+.++. ++.+|+...|..+.     .+.+...  ++.+++++ ++...
T Consensus        77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~-----~~~l~~~--~~~~~v~~g~~~~~  128 (305)
T PRK12921         77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQ-----LEQLEPY--FGRERVLGGVVFIS  128 (305)
T ss_pred             ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCCh-----HHHHHHh--CCcccEEEEEEEEE
Confidence            322                2344555665554 67888888998872     2333444  66778774 44443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.94  E-value=0.00014  Score=74.42  Aligned_cols=101  Identities=13%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..+||+|||+.|.||..+|..+...|+  +|.++|.+..                      ++.++.+++||+||++.  
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav--  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV--  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC--
Confidence            457999999449999999999999998  9999997520                      13455789999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      |            .+  ...++++++....|+++|  +.+.+.- ..++..+....    +.+++|.+
T Consensus       151 P------------~~--~~~~~~~~l~~l~~~~iv--~Dv~SvK-~~~~~~~~~~~----~~~fvg~H  197 (374)
T PRK11199        151 P------------IH--LTEEVIARLPPLPEDCIL--VDLTSVK-NAPLQAMLAAH----SGPVLGLH  197 (374)
T ss_pred             c------------HH--HHHHHHHHHhCCCCCcEE--EECCCcc-HHHHHHHHHhC----CCCEEeeC
Confidence            2            11  234445556653378877  4444321 22334443332    23588876

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.92  E-value=6.1e-05  Score=76.85  Aligned_cols=118  Identities=12%  Similarity=0.322  Sum_probs=75.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-----CCeEEEEecCch---hhhhhhhccc--C---CC-Cce-eeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-----VSALHLYDVMNV---KGVAADLSHC--N---TP-SQV-LDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-----~~ev~L~Di~~~---~g~~~dL~~~--~---~~-~~v-~~i~~t~d~~~  157 (412)
                      .+||+|||+ |..|..+|..++.++.     ..+|.||..++.   +..+.++.+.  .   .+ ..+ ..+..++|+++
T Consensus        11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            479999998 9999999999998862     139999988862   2334444432  1   11 111 23444678888


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh--hC-CCeEEEEEcCCCC---CcHHHHHHHHHHh
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD--NC-PDAFIHIISNPVN---STVPIAAEVLKQK  227 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~--~~-p~aiviv~TNPv~---~~~pI~t~i~~~~  227 (412)
                      ++++||+||++.  |              ...++++++++..  +. ++.++|.++-=.+   -..-.+++++++.
T Consensus        90 av~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~  149 (365)
T PTZ00345         90 AVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEE  149 (365)
T ss_pred             HHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHH
Confidence            999999999983  2              4567778888876  44 4556655532211   1001346666665

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.92  E-value=7.2e-05  Score=74.50  Aligned_cols=124  Identities=13%  Similarity=0.231  Sum_probs=76.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhh---hhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAA---DLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~---dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ..|||+|||+ |.||..+|..|+..|.  +|.+++.+.......   .+..............+++.+ .+..+|+||++
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            4589999998 9999999999999998  999999875211110   111000001111111123333 57899999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD  242 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld  242 (412)
                      .-...                ..++.+.+.... |+++++...|-.+    . .+.+.+.  +|+++|++- +...
T Consensus        80 vK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~----~-~e~l~~~--~~~~~v~~g~~~~~  132 (313)
T PRK06249         80 LKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLG----V-EEQLREI--LPAEHLLGGLCFIC  132 (313)
T ss_pred             ecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCC----c-HHHHHHH--CCCCcEEEEeeeEe
Confidence            43221                134445555544 7888888899887    2 3444555  678888764 5443

>PLN02427 UDP-apiose/xylose synthase

Probab=97.91  E-value=7.3e-05  Score=76.16  Aligned_cols=120  Identities=17%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             CCCCCCCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchh-hhhhhhc----ccCCCCceeeecCCCcHHhhcC
Q 015172           87 ALQPQASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLS----HCNTPSQVLDFTGPEELASALK  160 (412)
Q Consensus        87 ~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~-g~~~dL~----~~~~~~~v~~i~~t~d~~~al~  160 (412)
                      ..++.++|||.|+||+|++|++++..|+.+ +.  +|+.+|.+... ....++.    +........++....++.++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~   85 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK   85 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence            456677799999999999999999999987 56  89999976421 1111110    0001111112222234566788


Q ss_pred             CCcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|+||.+|+.....  .....+.+..|+.-...+.+..++..  ..||.+|
T Consensus        86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S  135 (386)
T PLN02427         86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS  135 (386)
T ss_pred             cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence            999999999754211  12233456677777777777776654  3444454

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.90  E-value=5.5e-05  Score=75.20  Aligned_cols=78  Identities=24%  Similarity=0.319  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .|||+|||+ |.||.++|..++..|+  +|.+||++..                      .+++++++++|+||++.   
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v---   55 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV---   55 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC---
Confidence            479999998 9999999999999998  9999998641                      24556789999999994   


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhh--CCCeEEEEEcC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADN--CPDAFIHIISN  211 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~aiviv~TN  211 (412)
                                 .  ...++++++.+..+  .++.+++..|+
T Consensus        56 -----------p--~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         56 -----------S--MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             -----------C--hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                       1  13456666777653  36778877776

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.90  E-value=6.4e-05  Score=76.09  Aligned_cols=116  Identities=16%  Similarity=0.379  Sum_probs=72.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCC------CCCeEEEEecCc---hhhhhhhhc--ccC---CCC-ce-eeecCCCcHHhh
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSP------LVSALHLYDVMN---VKGVAADLS--HCN---TPS-QV-LDFTGPEELASA  158 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~g------l~~ev~L~Di~~---~~g~~~dL~--~~~---~~~-~v-~~i~~t~d~~~a  158 (412)
                      ||+|||+ |..|.++|..++.++      +..+|.||.+++   .......+.  |..   .+. .+ ..+..++|++++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            6999998 999999999999888      113999999843   112222222  211   111 11 123446789889


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCC---cHHHHHHHHHHh
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNS---TVPIAAEVLKQK  227 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~---~~pI~t~i~~~~  227 (412)
                      +++||+||++.  |              ...++++++++..+. ++.+++.++-=.+.   ..-.+++++++.
T Consensus        80 l~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~  136 (342)
T TIGR03376        80 AKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE  136 (342)
T ss_pred             HhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH
Confidence            99999999983  3              456667777777665 45566555422110   011346776665

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.89  E-value=0.00018  Score=74.93  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C--ceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S--QVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~--~v~~i~~t~d~~~al~~aD  163 (412)
                      +|||+|||- |+||.++|..++. ++  +|+.||+++.+  +..|.....+       .  ....+..+++++ ++++||
T Consensus         6 ~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~ad   78 (425)
T PRK15182          6 EVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKFTSEIE-KIKECN   78 (425)
T ss_pred             CCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCC
Confidence            489999998 9999999998776 56  99999999732  1222222111       0  011233456665 689999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCC
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVN  214 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~  214 (412)
                      +||++.+.|.+...      ..++.-+....+.|.++. ++.++|+- |-|..
T Consensus        79 vvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg  125 (425)
T PRK15182         79 FYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPG  125 (425)
T ss_pred             EEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            99999999864432      123455555566666666 45555443 45554

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=97.88  E-value=7.8e-05  Score=73.26  Aligned_cols=115  Identities=20%  Similarity=0.290  Sum_probs=79.5

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCC
Q 015172           98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAGVPRKPG  176 (412)
Q Consensus        98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g  176 (412)
                      |+||+|++|+.++..|+.+|-..+|+.+|+........++...... ....+++...++.+++++||+||.+|....-.+
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~   81 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG   81 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence            8899999999999999999844599999987632221122222111 112355555678889999999999987533233


Q ss_pred             -CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          177 -MTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       177 -~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                       ..+..+..-|+.-.+.+++...+..-..+|  +|...+
T Consensus        82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV--ytSS~~  118 (280)
T PF01073_consen   82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV--YTSSIS  118 (280)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE--EEcCcc
Confidence             456667889999999999999886544333  554444

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.87  E-value=6.2e-05  Score=75.34  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc--C-C-CCcee-eecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC--N-T-PSQVL-DFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~--~-~-~~~v~-~i~~t~d~~~al~~aDiVIi  167 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|++||.++.......-.+.  . . ...+. .+..+++++++++++|+||+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~   80 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV   80 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence            689999998 9999999999999998  99999997522111111100  0 0 00010 12234577778899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +..              ..  .++++.+.+   .|+.+++..+|..+
T Consensus        81 ~v~--------------~~--~~~~v~~~l---~~~~~vi~~~~Gi~  108 (328)
T PRK14618         81 AVP--------------SK--ALRETLAGL---PRALGYVSCAKGLA  108 (328)
T ss_pred             ECc--------------hH--HHHHHHHhc---CcCCEEEEEeeccc
Confidence            941              11  123343332   36778877888643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.87  E-value=0.00028  Score=75.63  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=70.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcc-----cC------CCCceeeecCCCcHHhh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSH-----CN------TPSQVLDFTGPEELASA  158 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~-----~~------~~~~v~~i~~t~d~~~a  158 (412)
                      ..+.|.|+||+|++|..++..|+..|.  +|++++++..  .....++.+     ..      ......++.-..++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            446799999999999999999999998  9999998762  111111111     00      00011122222345567


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      +.++|+||.++|.......+....+..|......+++.+.+..-.-+|++
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V  206 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV  206 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            89999999999875432112122344566677778887776543444433

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.85  E-value=4.2e-05  Score=62.32  Aligned_cols=94  Identities=18%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEE-ecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPL-VSALHLY-DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~-Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||+|||+ |.||..++..+...|+ -.+|.++ +.++.+.  .++... .+  ... . +.++.++++++|+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~--~~~~~~-~~--~~~-~-~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKA--AELAKE-YG--VQA-T-ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH--HHHHHH-CT--TEE-E-SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHH--HHHHHh-hc--ccc-c-cCChHHhhccCCEEEEEEC--
Confidence            7999998 9999999999999982 1288866 8876221  112111 11  111 1 2256678999999999941  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                                    -..+.++.+++....++.++|-++||
T Consensus        71 --------------p~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --------------PQQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --------------GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --------------HHHHHHHHHHHhhccCCCEEEEeCCC
Confidence                          13345566666334478888777765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.82  E-value=0.00012  Score=75.98  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C------ceeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S------QVLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~------~v~~i~~t~d~~~al  159 (412)
                      ++||+|||. |.||..+|..|+..|.  +|+.+|+++.+-..  +.....+       .      ....+..+++    +
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~----~   73 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRATTT----P   73 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceeeecc----c
Confidence            479999998 9999999999999998  99999998732111  1111100       0      0011222232    4


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCCC
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVNS  215 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~~  215 (412)
                      ++||+||++.+.|.++..      ..++..+.+.++.+.++. ++.+||+- |.|...
T Consensus        74 ~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA  125 (415)
T ss_pred             ccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence            589999999988864432      234566666777777776 56666554 445553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=0.00016  Score=72.18  Aligned_cols=120  Identities=13%  Similarity=0.345  Sum_probs=74.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc----cC-CC-Ccee-eecCCCcHHhhc-CCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH----CN-TP-SQVL-DFTGPEELASAL-KGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~----~~-~~-~~v~-~i~~t~d~~~al-~~aDiV  165 (412)
                      |||+|||| |.||..++..|+..|.  +|.|++.++..  ...+..    .. .+ ..+. .+..++|+++++ .++|+|
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli   75 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTT--FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI   75 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHH--HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence            68999998 9999999999999997  99999997521  111211    10 00 0011 122346776666 589999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hC-CCeEEEEEcCCCCCc-HHHHHHHHHHhCCCCCCCeE
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NC-PDAFIHIISNPVNST-VPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~-p~aiviv~TNPv~~~-~pI~t~i~~~~sg~~~~kvi  236 (412)
                      |++.-                ..-+.++++.+.. +. ++..++..+|-.+.. .....+++.+.  +|.+++.
T Consensus        76 iiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~--~~~~~~~  131 (326)
T PRK14620         76 ILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEI--LPNNPIA  131 (326)
T ss_pred             EEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHH--cCCCceE
Confidence            99941                3445566666665 44 677777788876420 11224555555  4555544

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.74  E-value=0.00016  Score=70.88  Aligned_cols=85  Identities=19%  Similarity=0.250  Sum_probs=56.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||+|||. |.||..++..|...|.  +|.++|.++. ...+.+.   ..   ..  ..+++++ .+++||+||++..  
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g~---~~--~~~~~~~-~~~~aDlVilavp--   66 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---GL---VD--EASTDLS-LLKDCDLVILALP--   66 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---CC---cc--cccCCHh-HhcCCCEEEEcCC--
Confidence            58999998 9999999999999998  9999999762 2122111   11   11  1234554 6899999999942  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiv  206 (412)
                                    .....++.+++.++. |++++
T Consensus        67 --------------~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         67 --------------IGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             --------------HHHHHHHHHHHHHhCCCCcEE
Confidence                          122234556666665 56655

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.72  E-value=0.00035  Score=73.01  Aligned_cols=90  Identities=21%  Similarity=0.362  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||.|.||..++..+...|.  +|.++|.++..  ..+.++     .  +.   .++++++.+.+||+||++.. 
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-----g--v~---~~~~~~e~~~~aDvVIlavp-   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-----G--VE---YANDNIDAAKDADIVIISVP-   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-----C--Ce---eccCHHHHhccCCEEEEecC-
Confidence            6899998559999999999999998  99999987522  122111     1  11   23466678899999999942 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                                     .....++++++..+. |+++++-++.
T Consensus        68 ---------------~~~~~~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         68 ---------------INVTEDVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             ---------------HHHHHHHHHHHHhhCCCCCEEEEccc
Confidence                           123345555555555 6777765554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.70  E-value=0.00033  Score=67.82  Aligned_cols=95  Identities=16%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEE-ecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL--VSALHLY-DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~-Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||++||. |.||..++..|...|+  ..+|+.+ |.+..+.  ..+.+..    +. +  ..+..+.+++||+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~--~~~~~~g----~~-~--~~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARR--DVFQSLG----VK-T--AASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHH--HHHHHcC----CE-E--eCChHHHHhcCCEEEEEE-
Confidence            68999998 9999999999998875  3478888 7765321  2222211    11 1  235556789999999994 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                     +-..++++...+..+. |+.++|..++...
T Consensus        70 ---------------~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         70 ---------------KPQVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             ---------------CcHHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence                           1234556666666555 6777765555544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.70  E-value=0.00031  Score=65.81  Aligned_cols=98  Identities=23%  Similarity=0.327  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhh---hh------------hcccCCCCcee----e
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVA---AD------------LSHCNTPSQVL----D  148 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~---~d------------L~~~~~~~~v~----~  148 (412)
                      ..||+|+|+ |.+|+.+|..|+..|+ .+|+|+|.+.     +....   .|            |.+......+.    .
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            368999998 9999999999999996 6899999983     10000   01            11111111121    1


Q ss_pred             ecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       149 i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      ++ ..++.+.++++|+||.+               .+|.+....+.+.+.+..+..+++.
T Consensus        99 i~-~~~~~~~~~~~DlVi~a---------------~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        99 IT-EENIDKFFKDADIVCEA---------------FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             CC-HhHHHHHhcCCCEEEEC---------------CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            21 23445568999999999               4677888888888887776544433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.69  E-value=0.00037  Score=68.73  Aligned_cols=94  Identities=20%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +||++||- |.||.++|..|...|+  +|+.||.+..+. +..+......       ...++.++.+++|+||...    
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga~-------~a~s~~eaa~~aDvVitmv----   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGAT-------VAASPAEAAAEADVVITML----   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCCc-------ccCCHHHHHHhCCEEEEec----
Confidence            58999998 9999999999999999  999999986443 2223232211       1234567899999999983    


Q ss_pred             CCCCchhhHHHhhHHHHHHHHH---HHHhhC-CCeEEEEEcCCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVE---AVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~---~i~~~~-p~aiviv~TNPv~  214 (412)
                                 -|-+.++++..   -+.+.. |..++|..| +.+
T Consensus        66 -----------~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tis   98 (286)
T COG2084          66 -----------PDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TIS   98 (286)
T ss_pred             -----------CCHHHHHHHHhCccchhhcCCCCCEEEECC-CCC
Confidence                       24466666663   344444 666665543 444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.68  E-value=0.00031  Score=70.84  Aligned_cols=89  Identities=19%  Similarity=0.307  Sum_probs=59.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.||.+.....  +.        .   ..+.++++.+++||+|+++...
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~--~~--------~---~~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKDL--DF--------L---TYKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHhh--hh--------h---hccCCHHHHHhcCCEEEEeCCC
Confidence            4579999998 9999999999988888  9999998752100  00        1   1234677889999999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .           .++..+   +.+.+-+.. |++++|+++
T Consensus       209 t-----------~~t~~l---i~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        209 N-----------KESYHL---FDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             c-----------HHHHHH---HhHHHHhcCCCCcEEEEcC
Confidence            1           111122   223333344 789998886

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.68  E-value=0.0005  Score=66.59  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +|||+|||+ |.||..++..+...+.. .+|.++|.+...  ...+.+. ..  +. +  +.+.++.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~-~g--~~-~--~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEE-YG--VR-A--ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHh-cC--Ce-e--cCChHHHHhcCCEEEEEcC-
Confidence            579999998 99999999999888721 379999997522  1112211 01  11 1  2455567899999999841 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                     ...++++.+.+..+. +..|+..+|...
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           234556666666554 556666666554

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=97.68  E-value=0.00036  Score=72.86  Aligned_cols=112  Identities=13%  Similarity=0.045  Sum_probs=73.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++.|||.|+||+|++|+.++..|+.+|.  +|+.+|....  ......+..  .+ .+..+.+ +-.++.+.++|+||.+
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~~--~~-~~~~~~~-Di~~~~~~~~D~ViHl  191 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLFG--NP-RFELIRH-DVVEPILLEVDQIYHL  191 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhcc--CC-ceEEEEC-ccccccccCCCEEEEC
Confidence            4568999999999999999999999998  9999997531  111111110  01 1221111 1122357899999999


Q ss_pred             CCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+...  ....+..+.+..|+....++++.+.+...  .+|.+|
T Consensus       192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            87532  22234556778999999999999887653  454443

>PLN00198 anthocyanidin reductase; Provisional

Probab=97.62  E-value=0.00055  Score=68.22  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCcee----eecCCCcHHhhcCCCcE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVL----DFTGPEELASALKGVNV  164 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~aDi  164 (412)
                      |.++++|.|+||+|++|++++..|+..|.  +|++++.+. ......++........+.    +++...++.+.++++|+
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   83 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDL   83 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCE
Confidence            45568999999999999999999999998  888777654 111111111100000111    22222345567889999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhhC
Q 015172          165 VVIPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       165 VIiaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ||.+|+.......+ ..+++..|+.....+.+.+.+..
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~  121 (338)
T PLN00198         84 VFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK  121 (338)
T ss_pred             EEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99998743211122 23456789999999999987764

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=97.61  E-value=0.00051  Score=67.60  Aligned_cols=106  Identities=14%  Similarity=0.060  Sum_probs=69.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI  166 (412)
                      .+||.|+||+|++|+.++..|+.+|.  +|+.++.+... .....+... .....+    .++.-..++.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999998  89888876521 111111110 000011    12322345667789999999


Q ss_pred             EcCCCCCCCCCch-hhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRKPGMTR-DDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k~g~~r-~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .+|+......... .+.+..|+.....+++.+.+.
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9987542211122 356677999999999988765

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.61  E-value=0.00026  Score=70.10  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||. |.||..++..++..|+  +|.+||++....  ..+......    ......++.+.++++|+||++.    
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~--~~l~~~g~~----~~~s~~~~~~~~~~~dvIi~~v----   67 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAV--KAMKEDRTT----GVANLRELSQRLSAPRVVWVMV----   67 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHcCCc----ccCCHHHHHhhcCCCCEEEEEc----
Confidence            58999998 9999999999999998  999999986321  122221110    0111123344567899999983    


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                                ..  ..++++++.+.... ++.++|..+|..
T Consensus        68 ----------p~--~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        68 ----------PH--GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             ----------Cc--hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                      11  14555666666666 677887777653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.60  E-value=0.0007  Score=66.42  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |+||+|||+ |.||..++..+...+..  .+|+++|.+... ....+... ... .. +  +.+..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~-~~~-~~-~--~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK-YPT-VE-L--ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH-cCC-eE-E--eCCHHHHHhhCCEEEEecC
Confidence            578999998 99999999999888732  389999986421 11112111 111 11 1  2455667899999999842


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD  242 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld  242 (412)
                                      ...+.++++++..+. ++.+||.+.|-.+    + .++ ++.  ++..+|+=+ .++.
T Consensus        74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~----~-~~l-~~~--~~~~~vvR~MPN~~  123 (277)
T PRK06928         74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVS----L-DDL-LEI--TPGLQVSRLIPSLT  123 (277)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC----H-HHH-HHH--cCCCCEEEEeCccH
Confidence                            234556667776655 5667777788777    2 333 333  344466544 4443

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.59  E-value=0.00028  Score=71.79  Aligned_cols=129  Identities=16%  Similarity=0.223  Sum_probs=82.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch------hhhhhhhcccCCC------CceeeecCCCcHHhhcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV------KGVAADLSHCNTP------SQVLDFTGPEELASALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~------~g~~~dL~~~~~~------~~v~~i~~t~d~~~al~  160 (412)
                      .++|+|||- |+||..+|..++.+|.  +|+-+|||+.      .|+. -+.+....      .....+..|+|++ .++
T Consensus         9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~-~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~   83 (436)
T COG0677           9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGES-YIEEPDLDEVVKEAVESGKLRATTDPE-ELK   83 (436)
T ss_pred             ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcc-eeecCcHHHHHHHHHhcCCceEecChh-hcc
Confidence            379999998 9999999999999999  9999999972      1111 00111000      0011244578887 589


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEE-EcCCCCCcHHHHHHHHHHhCCCCC
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHI-ISNPVNSTVPIAAEVLKQKGVYDP  232 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv-~TNPv~~~~pI~t~i~~~~sg~~~  232 (412)
                      .||++|+++-.|.+...      .-++..+.+-++.|.++.. ...+|+ .|-|...+=-++--+++..+|+--
T Consensus        84 ~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~  151 (436)
T COG0677          84 ECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKF  151 (436)
T ss_pred             cCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence            99999999888865432      2346777788888888884 333322 255655433333334455455544

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.58  E-value=0.00056  Score=67.09  Aligned_cols=104  Identities=18%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|+.+|.+....  .++.+........++....++++.++++|+||..++...
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~   76 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR   76 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence            5899999999999999999999997  999999865211  111111111111122222345667889999999986532


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ....+..+....|+.....+++.+.+..
T Consensus        77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~  104 (328)
T TIGR03466        77 LWAPDPEEMYAANVEGTRNLLRAALEAG  104 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2233445566778888888888887654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.56  E-value=0.00047  Score=68.38  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|+.++..|...|.  +|+.++.+....  ..+.+........++.-..++.++++++|+||.+++...
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~   76 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP   76 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence            6899999999999999999999998  999998874211  111111111101122222456678999999999875432


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                      .   ...+....|......+++.+++..-.
T Consensus        77 ~---~~~~~~~~~~~~~~~l~~aa~~~gvk  103 (317)
T CHL00194         77 S---DLYNAKQIDWDGKLALIEAAKAAKIK  103 (317)
T ss_pred             C---CccchhhhhHHHHHHHHHHHHHcCCC
Confidence            1   11223455677777888888776544

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00082  Score=68.94  Aligned_cols=76  Identities=21%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ||||.|||| |.||+.+|..|++++. .+|++-|.... ...+.+..+.......-+......+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            589999998 9999999999999985 59999999852 2222222211111111122222345568899999999964

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=97.55  E-value=0.00057  Score=68.75  Aligned_cols=108  Identities=18%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhc----cc---CCCCceeeecCCCcHHhhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLS----HC---NTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~----~~---~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +++||.|+||+|++|++++..|+..|.  +|+.+|....  .....++.    +.   .......++....++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            357999999999999999999999997  9999998531  10011111    00   0000111232222445567899


Q ss_pred             cEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          163 NVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       163 DiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      |+||.+|+....+  .++..+....|+....++.+.+++..
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~  132 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH  132 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999998764322  23344567788999999999888764

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.53  E-value=0.00068  Score=67.63  Aligned_cols=114  Identities=18%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|.|+||+|++|++++..|+..|-..+|+++|.+....  ...++..........+++...++.++++++|+||.+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag   83 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA   83 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcc
Confidence            4689999999999999999998876223899999865221  11112111110001122222345567789999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....+  ..+..+.+..|+.....+.+.+.+....-+|
T Consensus        84 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV  121 (324)
T TIGR03589        84 LKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVV  121 (324)
T ss_pred             cCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            64322  2234567788998889999988876533333

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.53  E-value=0.00058  Score=67.51  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc----CCCC----ceeeecCCCcHHhhcC--CCc
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPS----QVLDFTGPEELASALK--GVN  163 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~----~~~~----~v~~i~~t~d~~~al~--~aD  163 (412)
                      |.|+||+|++|+.++..++..+. .+|+|+|.++  ......++...    ....    .+.++.....+...++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999998874 5899999998  23333444211    1110    1122221223345677  999


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc----CCCC
Q 015172          164 VVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS----NPVN  214 (412)
Q Consensus       164 iVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T----NPv~  214 (412)
                      +|+.+|....-|-  .+..+.+..|+---+.+++...++.-+-+|.+-|    ||.+
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn  136 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN  136 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc
Confidence            9999987644332  2446668899999999999999888666666654    6666

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.53  E-value=0.00039  Score=68.38  Aligned_cols=65  Identities=15%  Similarity=0.266  Sum_probs=48.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +|||+|||. |.||..+|..++..|.  +|.+||++.....  .+....    .   ..++++++.+++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~g----~---~~~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAAG----A---ETASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----C---eecCCHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999998  9999999863211  111111    1   12356777889999999994

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.52  E-value=0.0011  Score=67.49  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +||+|||. |.||..++..+...|+  ++.++|.+........  ...... ...  .++++++++++||+||++..   
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~--a~~~~~-~~~--~~~~~~~~~~~aDlVilavP---   69 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLAR--ALGFGV-IDE--LAADLQRAAAEADLIVLAVP---   69 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHH--HhcCCC-Ccc--cccCHHHHhcCCCEEEEeCC---
Confidence            47999998 9999999999999998  8899998762211111  001111 111  23567778899999999942   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhh-C-CCeEEEEE
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADN-C-PDAFIHII  209 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~-~-p~aiviv~  209 (412)
                                 .  ..+.++++++.+. . |+++|..+
T Consensus        70 -----------~--~~~~~vl~~l~~~~l~~~~ivtDv   94 (359)
T PRK06545         70 -----------V--DATAALLAELADLELKPGVIVTDV   94 (359)
T ss_pred             -----------H--HHHHHHHHHHhhcCCCCCcEEEeC
Confidence                       1  2345666677652 3 67666433

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.52  E-value=0.0003  Score=69.14  Aligned_cols=63  Identities=19%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+|||. |.||..+|..++..|+  +|++||.+...  ...+.+...    .   ..++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~---~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----V---TAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence            6999998 9999999999999998  99999998622  112222211    0   1235667899999999994

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07680 late competence protein ComER; Validated

Probab=97.51  E-value=0.00053  Score=66.90  Aligned_cols=97  Identities=15%  Similarity=0.257  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||+ |.||..++..+...|.+  .+|.++|.+....  ..+.+. .+ ...   .+.+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~--~~~~~~-~~-g~~---~~~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKA--YHIKER-YP-GIH---VAKTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHH--HHHHHH-cC-CeE---EECCHHHHHHhCCEEEEecC-
Confidence            58999998 99999999999888742  4799999976221  122221 11 121   12455567899999999941 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                     -..+.++.+.+..+. ++.+|+-++|.++
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           223455666666655 6778888888776

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.49  E-value=0.00044  Score=72.92  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIiaa  169 (412)
                      +.+|+|||. |.||.++|..|+.+|+  +|.+||+++.+.  .++......... .+.++.++++.++   ++|+||+.+
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~-~i~~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKT--EEFVKKAKEGNT-RVKGYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhhhhcCC-cceecCCHHHHHhcCCCCCEEEEEe
Confidence            358999998 9999999999999999  999999986321  122211000000 1223456766554   589888873


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      -               +-+.++++++.+..+. |+.+||..+|-.
T Consensus        75 ~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         75 K---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             C---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            1               2345566666666665 788888887743

>PLN02214 cinnamoyl-CoA reductase

Probab=97.49  E-value=0.001  Score=66.80  Aligned_cols=110  Identities=17%  Similarity=0.098  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ++++|.|+||+|++|++++..|+.+|.  +|+..+.+...   .....+......  ....+++...++.++++++|+||
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            457899999999999999999999998  89998876421   111112111000  00112323345667889999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .+|+...   ....+.+..|+.-...+.+.+.+....-+|
T Consensus        87 h~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V  123 (342)
T PLN02214         87 HTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVV  123 (342)
T ss_pred             EecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            9987542   234556778888889999888876533333

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.48  E-value=0.0016  Score=64.65  Aligned_cols=93  Identities=23%  Similarity=0.248  Sum_probs=59.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .+||+|||+ |.||..++..+...|...+|.++|.++. ...+.+   ...   ....  ..++++.+++||+||++...
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g~---~~~~--~~~~~~~~~~aDvViiavp~   76 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LGL---GDRV--TTSAAEAVKGADLVILCVPV   76 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CCC---Ccee--cCCHHHHhcCCCEEEECCCH
Confidence            479999998 9999999999998886458999999862 111111   111   0111  23455678999999999531


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                                      ....++.+.+..+. |+++|+.++
T Consensus        77 ----------------~~~~~v~~~l~~~l~~~~iv~dvg  100 (307)
T PRK07502         77 ----------------GASGAVAAEIAPHLKPGAIVTDVG  100 (307)
T ss_pred             ----------------HHHHHHHHHHHhhCCCCCEEEeCc
Confidence                            12244455555554 677665443

>PLN02650 dihydroflavonol-4-reductase

Probab=97.45  E-value=0.0012  Score=66.36  Aligned_cols=107  Identities=16%  Similarity=0.117  Sum_probs=69.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI  166 (412)
                      .++|.|+||+|++|++++..|+..|.  +|++++.+.. .....++... .....+    .+++....+.+.++++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            46899999999999999999999998  9998887641 1111122110 000011    12322334566788999999


Q ss_pred             EcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .+|+.......+ ..+.+..|+.....+++.+.+..
T Consensus        83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~  118 (351)
T PLN02650         83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK  118 (351)
T ss_pred             EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence            998753211112 23456778888889999888764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.43  E-value=0.0018  Score=63.35  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .|||+|||+ |.||..++..++..|.  ..+|+++|++..+ ...++... ..  +. .  +.+..+.+++||+||++.-
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~-~g--~~-~--~~~~~e~~~~aDvVilav~   74 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQK-YG--VK-G--THNKKELLTDANILFLAMK   74 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHh-cC--ce-E--eCCHHHHHhcCCEEEEEeC
Confidence            379999998 9999999999998872  1488999875411 12222221 11  11 1  2455567899999999942


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                      -....+++..+..+. ++.+||-+.+.++
T Consensus        75 ----------------p~~~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         75 ----------------PKDVAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                            112233445555544 6777766667776

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=97.43  E-value=0.0016  Score=65.23  Aligned_cols=117  Identities=17%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hh--hhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VK--GVAADLSHCNTP--SQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~--g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ..++|+|.||+|++|+.+...|+.+|+  .|+--=+++  .+  .+..+|......  ....++.-.+.+.+++++||.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence            468999999999999999999999999  776654444  22  245555543321  1123444456788899999999


Q ss_pred             EEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172          166 VIPAGVPRKPGM-TRDDLFNINANIVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       166 Iiaag~p~k~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +.+|....-... .-.+++.-+++-...+.+.+.+.. ...=+|+|.
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TS  128 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTS  128 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEec
Confidence            999864321111 244678888899999999998876 332233553

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.42  E-value=0.00063  Score=59.90  Aligned_cols=121  Identities=15%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |+|+|+ |.||..+|+.|...|.  +|.|++... .....   ..+........+.......+..+....+|+||++.-.
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            789998 9999999999999998  999999876 11110   1111111001111111112222357999999999421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD  242 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld  242 (412)
                                      .-..++.+.++.+. |++.++..-|=.+    . -+.+.+.  +++++|++- +...
T Consensus        78 ----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g----~-~~~l~~~--~~~~~v~~g~~~~g  127 (151)
T PF02558_consen   78 ----------------YQLEQALQSLKPYLDPNTTIVSLQNGMG----N-EEVLAEY--FPRPRVLGGVTTIG  127 (151)
T ss_dssp             ----------------GGHHHHHHHHCTGEETTEEEEEESSSSS----H-HHHHHCH--STGSGEEEEEEEEE
T ss_pred             ----------------cchHHHHHHHhhccCCCcEEEEEeCCCC----c-HHHHHHH--cCCCcEEEEEEeEe
Confidence                            11244666687777 8888988999888    3 3555555  567788754 5433

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02256 arogenate dehydrogenase

Probab=97.42  E-value=0.0016  Score=64.92  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=68.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa  169 (412)
                      .+.+||+|||. |.||+.++..+...|.  +|+.+|.+.....+.++   .    +..   .++.++.+ .++|+||++.
T Consensus        34 ~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         34 SRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence            45689999998 9999999999988887  89999987522222111   1    111   24555554 4799999984


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHH-HhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCC-CCeEecc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAV-ADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDP-KKLFGVT  239 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i-~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~-~kviGlt  239 (412)
                      .                .....++++++ ..+. |+++|+-++..=.   .+ .+.+.+.  ++. .++||..
T Consensus       101 p----------------~~~~~~vl~~l~~~~l~~~~iviDv~SvK~---~~-~~~~~~~--l~~~~~~V~~H  151 (304)
T PLN02256        101 S----------------ILSTEAVLRSLPLQRLKRSTLFVDVLSVKE---FP-KNLLLQV--LPEEFDILCTH  151 (304)
T ss_pred             C----------------HHHHHHHHHhhhhhccCCCCEEEecCCchH---HH-HHHHHHh--CCCCCeEEecC
Confidence            2                12345555555 2333 7887755554212   23 2333443  222 3577774

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.41  E-value=0.00085  Score=60.52  Aligned_cols=91  Identities=25%  Similarity=0.321  Sum_probs=62.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP  175 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~  175 (412)
                      |.|+||+|.+|..++..|..+|.  +|+++-.++.+..  +  +........++.-..++.++++++|.||.++|.+.+ 
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~-   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK-   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence            78999999999999999999997  9999988763211  1  111000001111123456789999999999876543 


Q ss_pred             CCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          176 GMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       176 g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                                +....+.+++.+++....
T Consensus        74 ----------~~~~~~~~~~a~~~~~~~   91 (183)
T PF13460_consen   74 ----------DVDAAKNIIEAAKKAGVK   91 (183)
T ss_dssp             ----------HHHHHHHHHHHHHHTTSS
T ss_pred             ----------cccccccccccccccccc
Confidence                      267788888888876633

...

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.40  E-value=0.00096  Score=66.84  Aligned_cols=112  Identities=18%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhccc-CCCCceeeec-CCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFT-GPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~-~t~d~~~al~~aDiVIiaa  169 (412)
                      ||||.|+||+|++|+.++..|+.. +.  +|+.+|.....  ..++... .......++. ....+.+.++++|+||.++
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a   76 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV   76 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence            579999999999999999999875 66  99999975311  1111111 1110011221 1122335678999999988


Q ss_pred             CCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          170 GVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       170 g~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +...  ....+.......|+.....+++.+.+..  ..+|.+|
T Consensus        77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~S  117 (347)
T PRK11908         77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPS  117 (347)
T ss_pred             ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEe
Confidence            7532  2222333445667777778888877653  3444444

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.39  E-value=0.00068  Score=67.10  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=48.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |+||+|||. |.||..++..++..|.  +|++||+++...  .++....    .   ....++.+++++||+||++.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~--~~~~~~g----~---~~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAV--DALVDKG----A---TPAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHcC----C---cccCCHHHHHhcCCEEEEec
Confidence            358999998 9999999999999998  999999986321  1222211    1   12345667889999999984

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.39  E-value=0.0014  Score=64.18  Aligned_cols=96  Identities=8%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +||++||+ |.||..++..+...|+  ..+|+.+|.+...  ...+.+. ..  +. .  +++..+.+++||+||++.. 
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~-~g--~~-~--~~~~~e~~~~aDiIiLavk-   72 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDK-YG--IT-I--TTNNNEVANSADILILSIK-   72 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHh-cC--cE-E--eCCcHHHHhhCCEEEEEeC-
Confidence            68999998 9999999999998875  3479999987522  1222221 01  11 1  2345557899999999942 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                     -..+.++.+.+..+. ++.+||-+.-.++
T Consensus        73 ---------------P~~~~~vl~~l~~~~~~~~lvISi~AGi~  101 (272)
T PRK12491         73 ---------------PDLYSSVINQIKDQIKNDVIVVTIAAGKS  101 (272)
T ss_pred             ---------------hHHHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence                           134555556666555 5667755555555

>PLN02206 UDP-glucuronate decarboxylase

Probab=97.38  E-value=0.0014  Score=68.65  Aligned_cols=112  Identities=13%  Similarity=0.038  Sum_probs=71.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .+.|||.|+||+|++|+.++..|+.+|.  +|+.+|....  .....+..  .. ..+..+.+ +-..+.+.++|+||.+
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~~--~~-~~~~~i~~-D~~~~~l~~~D~ViHl  190 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHHF--SN-PNFELIRH-DVVEPILLEVDQIYHL  190 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhhc--cC-CceEEEEC-CccChhhcCCCEEEEe
Confidence            3558999999999999999999999998  9999986431  11111111  00 11222221 1122356789999999


Q ss_pred             CCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+...  ....+..+.+..|+.....+.+.+++..  ..+|.+|
T Consensus       191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S  232 (442)
T PLN02206        191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS  232 (442)
T ss_pred             eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence            87532  1122345667889999999999887764  3454443

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.34  E-value=0.0018  Score=64.18  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhh---hhhhcccCCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGV---AADLSHCNTPSQVLDFTGPEELASALK--GVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~---~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVI  166 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|...  ....   ..++.+........+++-..++.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999999998  999998642  1111   111111111000112211122333444  689999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .+++.....  .....+.+..|+.....+++.+.+..
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  115 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN  115 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            998764321  12345667888988899988887754

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0034  Score=61.85  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~  171 (412)
                      .++|+|+|. |.||..+|..+...|+  .+.+++.+.-.+....-....    +.+ ..+.+. .++.+++|+||+++  
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lg----v~d-~~~~~~~~~~~~~aD~Vivav--   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELG----VID-ELTVAGLAEAAAEADLVIVAV--   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcC----ccc-ccccchhhhhcccCCEEEEec--
Confidence            579999998 9999999999999999  777777765211111000000    100 011222 35789999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiv  206 (412)
                      |              +....++++++..+. |+++|
T Consensus        73 P--------------i~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          73 P--------------IEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             c--------------HHHHHHHHHHhcccCCCCCEE
Confidence            3              334444555555444 67777

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.27  E-value=0.0029  Score=62.96  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=72.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhh----hhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAA----DLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~----dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      .|||+|+|+ |.||+.++..|...|.  +|.|++...  ......    .+.+........ .... +. +.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~-~~~~-~~-~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA-IPAE-TA-DAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeec-cCCC-Cc-ccccccCEEE
Confidence            479999998 9999999999999997  999999863  111111    011111111111 1111 11 2356899999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      ++.-               ... ..+..+.+..+. +++.++..-|=++.     -+.+.+.  ++.+++++-
T Consensus        76 v~vK---------------~~~-~~~al~~l~~~l~~~t~vv~lQNGv~~-----~e~l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LACK---------------AYD-AEPAVASLAHRLAPGAELLLLQNGLGS-----QDAVAAR--VPHARCIFA  125 (305)
T ss_pred             EECC---------------HHh-HHHHHHHHHhhCCCCCEEEEEeCCCCC-----HHHHHHh--CCCCcEEEE
Confidence            9942               111 234555666665 89999889999883     2334444  667777765

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.27  E-value=0.00099  Score=58.08  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-.... .-+.++.+. .+. ..    ..++.+.++++|+||++.  
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs~-~sa~~a~~~-~~~-~~----~~~~~~~~~~aDlv~iav--   76 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRSP-ASAERAAAF-IGA-GA----ILDLEEILRDADLVFIAV--   76 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCHH--HHHHHHC---TT----------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCc-ccccccccc-ccc-cc----ccccccccccCCEEEEEe--
Confidence            3589999998 9999999999999998  7766543321 111222221 111 11    123456789999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhh--C-CCeEEEEEc--CCCCCcHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADN--C-PDAFIHIIS--NPVNSTVPI  219 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~--~-p~aiviv~T--NPv~~~~pI  219 (412)
                                  ..  ..+.++++++.++  . |+.+|+=.|  -+++++-|+
T Consensus        77 ------------pD--daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   77 ------------PD--DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             -------------C--CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ------------ch--HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                        21  2457788888876  3 555553332  345544443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.26  E-value=0.002  Score=63.86  Aligned_cols=91  Identities=16%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIiaag  170 (412)
                      |||+|||. |.||..++..|+..|.  +|.+||.++...  .++.+..    ..   ...++++.++   ++|+||++..
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~---~~~~~~e~~~~~~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAV--EALAEEG----AT---GADSLEELVAKLPAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHCC----Ce---ecCCHHHHHhhcCCCCEEEEEec
Confidence            58999998 9999999999999998  999999986321  1222211    11   1234444444   4799999832


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      .               ...++++...+.... ++.++|..|+
T Consensus        69 ~---------------~~~~~~v~~~l~~~l~~g~ivid~st   95 (301)
T PRK09599         69 A---------------GEITDATIDELAPLLSPGDIVIDGGN   95 (301)
T ss_pred             C---------------CcHHHHHHHHHHhhCCCCCEEEeCCC
Confidence            1               123333444554444 5667666554

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.24  E-value=0.002  Score=64.39  Aligned_cols=121  Identities=19%  Similarity=0.274  Sum_probs=76.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|+|+ |.||+.+++.|+..|.  .|.++-.++ ....-   ..+.+.......... .+++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEEe
Confidence            79999998 9999999999999994  677776654 11111   112221111011111 1223 34688999999994


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE-eccccc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTTLD  242 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi-Glt~Ld  242 (412)
                      -                .--..+..+.+..+. |+++|+..=|=.+    - -+...+.  ++.++|+ |+|...
T Consensus        76 K----------------a~q~~~al~~l~~~~~~~t~vl~lqNG~g----~-~e~l~~~--~~~~~il~G~~~~~  127 (307)
T COG1893          76 K----------------AYQLEEALPSLAPLLGPNTVVLFLQNGLG----H-EEELRKI--LPKETVLGGVTTHG  127 (307)
T ss_pred             c----------------cccHHHHHHHhhhcCCCCcEEEEEeCCCc----H-HHHHHHh--CCcceEEEEEeeee
Confidence            2                223356777777777 7888888889888    2 3445555  5666555 576533

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.0023  Score=62.25  Aligned_cols=101  Identities=23%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCC-cEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGV-NVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a-DiVIiaag~p  172 (412)
                      |+|.|+||+|++|..++..|...|.  +|+.+|.......... .+..  ....+++......+.++++ |.||.+++..
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~--~~~~d~~~~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE--FVVLDLTDRDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc--eeeecccchHHHHHHHhcCCCEEEEccccC
Confidence            3599999999999999999999998  9999998652111111 1111  0011111112233455666 9999998876


Q ss_pred             CCCCCch---hhHHHhhHHHHHHHHHHHHh
Q 015172          173 RKPGMTR---DDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       173 ~k~g~~r---~dl~~~N~~i~~~i~~~i~~  199 (412)
                      ..++..+   .++...|+...+++++...+
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~  105 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARA  105 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555433   35788999999999999998

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.23  E-value=0.0053  Score=58.50  Aligned_cols=98  Identities=10%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|||+ |.||..++..++..+.  ..+++++|.+.. ....++.+. ..  +.   .+.|+++.++++|+||++..
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~--~~---~~~~~~~~~~~~DiViiavp   75 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQAR-YN--VS---TTTDWKQHVTSVDTIVLAMP   75 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHH-cC--cE---EeCChHHHHhcCCEEEEecC
Confidence            478999998 9999999998887753  234777776421 111222221 11  11   13466678899999999931


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                      -...+++++++..+.++.+||-++.-.+
T Consensus        76 ----------------~~~~~~v~~~l~~~~~~~~vis~~~gi~  103 (245)
T PRK07634         76 ----------------PSAHEELLAELSPLLSNQLVVTVAAGIG  103 (245)
T ss_pred             ----------------HHHHHHHHHHHHhhccCCEEEEECCCCC
Confidence                            1233455555555444556655565555

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.22  E-value=0.0038  Score=61.73  Aligned_cols=107  Identities=15%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcc-cCCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSH-CNTPSQV----LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~-~~~~~~v----~~i~~t~d~~~al~~aDiVI  166 (412)
                      .++|.|+||+|++|+.++..|+..|.  +|++.+++... .....+.. ......+    .+++-..++++.++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            47899999999999999999999998  88888766421 11111111 1100111    12332344566788999999


Q ss_pred             EcCCCCCCC-CC-chhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKP-GM-TRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~-g~-~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .+||..... .. .....+..|+.....+.+.+.++.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~  119 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS  119 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999854211 11 123456778888888888887754

>PLN02583 cinnamoyl-CoA reductase

Probab=97.20  E-value=0.0036  Score=61.56  Aligned_cols=107  Identities=19%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      .++|.|+||+|++|..++..|+.+|.  +|++.+.+..    .....++......  ....+++-..++.+++.++|.|+
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~   83 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF   83 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            35799999999999999999999998  9998877431    1111222111101  11113332344567899999998


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ..++.+........+++..|+.-...+.+.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  118 (297)
T PLN02583         84 CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD  118 (297)
T ss_pred             EeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            76654422111234567788888888998887753

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=97.19  E-value=0.0026  Score=64.79  Aligned_cols=113  Identities=19%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +...|||.|+||+|++|+.++..|...|.  +|+.+|..... ...+... .......++....++.+.++++|+||.+|
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSEDMF-CHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-ccccccc-cceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            34568999999999999999999999998  99999975310 0000000 00011112221123444578999999998


Q ss_pred             CCCCCCC---CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRKPG---MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k~g---~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +.....+   ......+..|+.....+++.+.+....-+|
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V  133 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF  133 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            6432111   122334567888888899988776544444

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.18  E-value=0.0016  Score=64.57  Aligned_cols=91  Identities=12%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiVIiaag  170 (412)
                      |||+|||. |.||..++..+...|.  +|++||.++.+.  ..+.+..    ..   ...++++.+++   +|+||++..
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~---~~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----IT---ARHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Ce---ecCCHHHHHHhCCCCCEEEEEec
Confidence            58999998 9999999999999998  999999976321  1222211    11   12455555554   699999842


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      .               -+.+++++..+.... ++.++|..|+
T Consensus        69 ~---------------~~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         69 A---------------GEVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             C---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence            1               123444445555544 6777766653

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.17  E-value=0.0024  Score=61.48  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP  175 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~  175 (412)
                      |.|+||+|++|..++..|+..|.  +|+.++++......  +...    .+..+.+ .+..+.++++|+||.+++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            56999999999999999999998  99999987521110  0000    0111222 22345789999999999876432


Q ss_pred             CC----chhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          176 GM----TRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       176 g~----~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      +.    ...++...|+...+.+.+.+.+...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            21    2344566788999999999987653

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.16  E-value=0.0043  Score=61.32  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI  166 (412)
                      .++|.|+||+|++|++++..|+..|.  +|++...+.. ......+... .....+    .+++...++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            36899999999999999999999998  8886655431 1111112110 001111    12222344666788999999


Q ss_pred             EcCCCCCC-CCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRK-PGMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k-~g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .+|+.... ......+++..|+.....+.+.+.+.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            99875321 11122345667888888888887764

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.16  E-value=0.0045  Score=62.19  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccC-CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCN-TPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~-~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .|||.|+||+|++|+.++..|+..|.  +|++.|.+....  ...++.... ......+++-..++.+.+++.|+||.+|
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            47999999999999999999999998  899888764211  111121110 0000112221233556678899999999


Q ss_pred             CCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHhh
Q 015172          170 GVPRKP---G-MTRDD-----LFNINANIVKTLVEAVADN  200 (412)
Q Consensus       170 g~p~k~---g-~~r~d-----l~~~N~~i~~~i~~~i~~~  200 (412)
                      +.....   . .+..+     .+..|+.....+.+.+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~  127 (353)
T PLN02896         88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS  127 (353)
T ss_pred             ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc
Confidence            864311   1 11222     2223346667777777665

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.16  E-value=0.0035  Score=62.85  Aligned_cols=116  Identities=18%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhh-hhccc-CCCCceeeecCCCcHHhhcCC--CcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAA-DLSHC-NTPSQVLDFTGPEELASALKG--VNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~-dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIi  167 (412)
                      .++|.|+||+|++|+.++..|+..|.  +|+.+|.+... .... .+... .......+++...++.+.+++  .|+||.
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            47899999999999999999999998  89999986521 1111 11110 011111122222334444554  599999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +++.+...  ..+....+..|+.....+++.+.+......++.+|
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~S  126 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVT  126 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            99854321  12234556778888888888887654223444444

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=97.15  E-value=0.0023  Score=70.14  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhc-ccCCCCceeeecCCCc-HHhhcCCCcEEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLS-HCNTPSQVLDFTGPEE-LASALKGVNVVVI  167 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~-~~~~~~~v~~i~~t~d-~~~al~~aDiVIi  167 (412)
                      +++|||.|+||+|++|++++..|+.. |.  +|+.+|.+.....  ++. +........+++...+ .+++++++|+||.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH  388 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP  388 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence            56789999999999999999999875 67  9999998652100  111 1111110112211111 3456889999999


Q ss_pred             cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          168 PAGVPR--KPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       168 aag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +|+...  ....+..+++..|+....++.+.+.++.
T Consensus       389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~  424 (660)
T PRK08125        389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN  424 (660)
T ss_pred             CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC
Confidence            887543  2223445667788888888999988865

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.13  E-value=0.0029  Score=66.20  Aligned_cols=176  Identities=16%  Similarity=0.128  Sum_probs=93.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hh------------hhhhhc---c---cCCCCceeee
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KG------------VAADLS---H---CNTPSQVLDF  149 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g------------~~~dL~---~---~~~~~~v~~i  149 (412)
                      .+++||.|+||+|++|++++..|+..|.  +|+++|....   ..            ....+.   +   ........++
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl  122 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI  122 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence            5578999999999999999999999998  9999985320   00            000010   0   0111101122


Q ss_pred             cCCCcHHhhcC--CCcEEEEcCCCCCCCC--Cch---hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC-CC--CcHHH
Q 015172          150 TGPEELASALK--GVNVVVIPAGVPRKPG--MTR---DDLFNINANIVKTLVEAVADNCPDAFIHIISNP-VN--STVPI  219 (412)
Q Consensus       150 ~~t~d~~~al~--~aDiVIiaag~p~k~g--~~r---~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP-v~--~~~pI  219 (412)
                      ....++.++++  ++|+||.+|+....+-  .+.   ...+..|+.....+++.+.++.....|+.+|-. +-  ...|+
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence            22223444555  5899999986532211  111   223457999999999998887654444433311 00  00001


Q ss_pred             HHHH-------HHHh---CCCCCCCeEeccccchHHHHHHHHHHcCCCCCCee-eeEEccc
Q 015172          220 AAEV-------LKQK---GVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD-VPVVGGH  269 (412)
Q Consensus       220 ~t~i-------~~~~---sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~-~~ViG~h  269 (412)
                       .+-       ....   ....|....|.+=+-...+-...++..|++.--++ ..|+|.+
T Consensus       203 -~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~  262 (442)
T PLN02572        203 -EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR  262 (442)
T ss_pred             -cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence             000       0000   01234455666432223344445666787766666 4577765

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.12  E-value=0.0042  Score=60.31  Aligned_cols=89  Identities=15%  Similarity=0.247  Sum_probs=58.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCC--eEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVS--ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~--ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||+ |.||+.++..+...+...  +++.+|.+...     +     .  ..   ...+..+.++++|+||++.  
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-----~--~~---~~~~~~~~~~~~D~Vilav--   65 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-----P--FV---YLQSNEELAKTCDIIVLAV--   65 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-----C--eE---EeCChHHHHHhCCEEEEEe--
Confidence            79999998 999999999999887432  48888876421     0     0  11   1234445678999999983  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      |              ...+.++.+++..+.++..+|...+-++
T Consensus        66 k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence            1              2445566666665544345556666666

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.11  E-value=0.0031  Score=57.70  Aligned_cols=33  Identities=39%  Similarity=0.619  Sum_probs=30.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6999998 9999999999999996 6899999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02778 3,5-epimerase/4-reductase

Probab=97.09  E-value=0.0076  Score=59.54  Aligned_cols=92  Identities=20%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ...|||.|+||+|++|++++..|..+|.  +|++...+        +.+.      ..+  ..++.+  .++|+||.+|+
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~------~~v--~~~l~~--~~~D~ViH~Aa   66 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENR------ASL--EADIDA--VKPTHVFNAAG   66 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCH------HHH--HHHHHh--cCCCEEEECCc
Confidence            3458999999999999999999999998  77654221        1110      001  012221  37899999998


Q ss_pred             CCCCCC-----CchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          171 VPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       171 ~p~k~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      ....+.     .+..+.+..|......+++.+++...
T Consensus        67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv  103 (298)
T PLN02778         67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL  103 (298)
T ss_pred             ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            643222     23456678899988899999887653

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.08  E-value=0.0027  Score=61.72  Aligned_cols=116  Identities=22%  Similarity=0.120  Sum_probs=69.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhccc-CCCCceeeecCCCcHHhhcCC--CcEEEEc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHC-NTPSQVLDFTGPEELASALKG--VNVVVIP  168 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIia  168 (412)
                      ||.|+||+|++|..++..|+..+...+|+++|....   .....++... .......+++-..++.+++++  +|+||.+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            589999999999999998888762238999886431   1111122111 000001122222345556776  8999999


Q ss_pred             CCCCCC--CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRK--PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++....  ........+..|......+++.+.+...+..++.+|
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S  124 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS  124 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            875321  112334456778888888998888765454455444

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.03  E-value=0.0025  Score=62.93  Aligned_cols=75  Identities=28%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc--
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP--  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia--  168 (412)
                      .+||.|||+ |.+|..+++.|+..|. .+|.++|++.  +++.+.++.+.. +. .. +....++.+.++++|+||.+  
T Consensus       127 ~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~-~~-~~-~~~~~~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        127 LERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF-PA-AR-ATAGSDLAAALAAADGLVHATP  201 (284)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC-CC-eE-EEeccchHhhhCCCCEEEECCc
Confidence            468999998 9999999999999995 6899999986  344444554332 11 11 12223444568999999998  


Q ss_pred             CCCC
Q 015172          169 AGVP  172 (412)
Q Consensus       169 ag~p  172 (412)
                      +|.+
T Consensus       202 ~Gm~  205 (284)
T PRK12549        202 TGMA  205 (284)
T ss_pred             CCCC
Confidence            4543

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.011  Score=63.00  Aligned_cols=121  Identities=21%  Similarity=0.276  Sum_probs=83.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCcee----eecCCCcHHhhcCC--CcE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVL----DFTGPEELASALKG--VNV  164 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~--aDi  164 (412)
                      .+.|-|.||+|++|+.+...++..+. .+|+++|.++.  .....+|.+......+.    ++........++++  .|+
T Consensus       250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            56899999999999999999988864 59999999982  22233444421111121    22212334567888  999


Q ss_pred             EEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc----CCCC
Q 015172          165 VVIPAGVPRKPGM--TRDDLFNINANIVKTLVEAVADNCPDAFIHIIS----NPVN  214 (412)
Q Consensus       165 VIiaag~p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T----NPv~  214 (412)
                      |+.+|....-|-+  +-.+-+..|+---+++++...++.=+.++++-|    ||.|
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtN  384 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTN  384 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCch
Confidence            9999987666654  345668889888899999988877555555543    6666

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.03  E-value=0.0075  Score=58.86  Aligned_cols=66  Identities=24%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||. |.||..++..+...|+..+|+.+|+++...  ..+.+...   . .  ...++++ +.+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~--~~~~~~g~---~-~--~~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHL--KKALELGL---V-D--EIVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHH--HHHHHCCC---C-c--ccCCHHH-HhcCCEEEEeC
Confidence            58999998 999999999999888644789999876211  11111111   1 0  1124554 45699999994

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.02  E-value=0.0015  Score=56.03  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=58.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhc--ccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLS--HCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~--~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||+|+||+|++|..+...|...+.+.-+.+++.....+....-.  +......+. +.. .+.+ .+.++|+||.+.+  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~Dvvf~a~~--   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLS-VED-ADPE-ELSDVDVVFLALP--   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEB-EEE-TSGH-HHTTESEEEE-SC--
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcccccccccee-Eee-cchh-HhhcCCEEEecCc--
Confidence            79999999999999999999987666667777665222211111  111111121 111 2444 6899999999942  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                    ....+++.+.+.+  .+.++  +.+..+
T Consensus        76 --------------~~~~~~~~~~~~~--~g~~V--iD~s~~   99 (121)
T PF01118_consen   76 --------------HGASKELAPKLLK--AGIKV--IDLSGD   99 (121)
T ss_dssp             --------------HHHHHHHHHHHHH--TTSEE--EESSST
T ss_pred             --------------hhHHHHHHHHHhh--CCcEE--EeCCHH
Confidence                          3455666666633  34455  666665

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.02  E-value=0.0056  Score=62.96  Aligned_cols=110  Identities=18%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh----hhhhhcc--cCCCCceeeecCCCcHHhhcC--
Q 015172           89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG----VAADLSH--CNTPSQVLDFTGPEELASALK--  160 (412)
Q Consensus        89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g----~~~dL~~--~~~~~~v~~i~~t~d~~~al~--  160 (412)
                      .....+||.|+||+|++|..++..|+.+|.  +|++++.+....    ...++..  ........+++-..++.+.++  
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~  133 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE  133 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence            334568999999999999999999999998  999999875210    0111111  111111112322233444555  


Q ss_pred             --CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          161 --GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       161 --~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                        ++|+||.+++.+...   ..+.+..|......+++.+++..-.
T Consensus       134 ~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~  175 (390)
T PLN02657        134 GDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK  175 (390)
T ss_pred             CCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC
Confidence              599999987753211   1123455677777788887766533

>PLN02712 arogenate dehydrogenase

Probab=97.01  E-value=0.015  Score=64.03  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=59.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa  169 (412)
                      .+++||+|||. |.||..++..+...|.  +|..+|.+.....+.++   .    +..   .+++++.+ ++||+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEEcC
Confidence            44679999998 9999999999998887  89999987422122111   1    111   23555534 5799999993


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHH-hhC-CCeEEEEEc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVA-DNC-PDAFIHIIS  210 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~-~~~-p~aiviv~T  210 (412)
                        |              ...+.++++++. .+. |+++|+-++
T Consensus       117 --P--------------~~~~~~vl~~l~~~~l~~g~iVvDv~  143 (667)
T PLN02712        117 --S--------------IISTENVLKSLPLQRLKRNTLFVDVL  143 (667)
T ss_pred             --C--------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence              1              123455555554 334 678776665

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.00  E-value=0.0057  Score=61.16  Aligned_cols=106  Identities=13%  Similarity=0.015  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcc-------cCCCCceeeecCCCcHHhhcCC--
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSH-------CNTPSQVLDFTGPEELASALKG--  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~-------~~~~~~v~~i~~t~d~~~al~~--  161 (412)
                      +||.|+||+|++|+.++..|+..|.  +|+++|.+..   ......+..       ........+++...++.+.+++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  9999998641   111111110       0011111133222234455664  


Q ss_pred             CcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          162 VNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       162 aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +|+||.+|+....+.  ......+..|+.-...+++.+.+..
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~  120 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG  120 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            699999998643221  1123334556666677888877654

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.97  E-value=0.0062  Score=60.95  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||......  .     .    ...+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~-----~----~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--P-----G----VQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--C-----C----ceeecccccHHHHHhcCCEEEECCCC
Confidence            4579999998 9999999999998898  999999753110  0     0    11111234677899999999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .           .++..++.  .+.+.+.-|++++|+++
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            1           12222322  22333334899999885

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.97  E-value=0.0023  Score=56.03  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..||.|||| |.+|..+++.|...|. .+|.+++++..  ...+..+.    ...+..+ ..+++.+.+.++|+||.+.+
T Consensus        12 ~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~----~~~~~~~-~~~~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   12 GKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG----GVNIEAI-PLEDLEEALQEADIVINATP   84 (135)
T ss_dssp             TSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT----GCSEEEE-EGGGHCHHHHTESEEEE-SS
T ss_pred             CCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC----cccccee-eHHHHHHHHhhCCeEEEecC
Confidence            479999998 9999999999999985 57999999762  33333331    1112222 23456567899999999976


Q ss_pred             CCC
Q 015172          171 VPR  173 (412)
Q Consensus       171 ~p~  173 (412)
                      .+.
T Consensus        85 ~~~   87 (135)
T PF01488_consen   85 SGM   87 (135)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            553

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.009  Score=59.14  Aligned_cols=154  Identities=19%  Similarity=0.168  Sum_probs=98.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhc--CCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASAL--KGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al--~~aDiVIiaag  170 (412)
                      |+|.|.|++|++|++.+..|+..|.  +|+.+|... ....+.+-...  +....++.-..-+.+.|  ...|.||..|+
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~--~f~~gDi~D~~~L~~vf~~~~idaViHFAa   76 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQF--KFYEGDLLDRALLTAVFEENKIDAVVHFAA   76 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccC--ceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence            6899999999999999999999999  999999865 21111111000  10011111000111112  47889999887


Q ss_pred             CCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE-----EcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccch
Q 015172          171 VPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHI-----ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDV  243 (412)
Q Consensus       171 ~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv-----~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds  243 (412)
                      .-.-+.  +.-+.+...|+---..+.+.+.++..+-+|+-     +.+|..  +|| +|    .....|.+-.|-+-|-+
T Consensus        77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~--~PI-~E----~~~~~p~NPYG~sKlm~  149 (329)
T COG1087          77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTT--SPI-SE----TSPLAPINPYGRSKLMS  149 (329)
T ss_pred             ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCC--ccc-CC----CCCCCCCCcchhHHHHH
Confidence            543221  23456678888888999999999987666632     345655  676 43    22355788888886666


Q ss_pred             HHHHHHHHHHcCCCC
Q 015172          244 VRANTFVAQKKNLKL  258 (412)
Q Consensus       244 ~R~~~~la~~l~v~~  258 (412)
                      .++-+.+++..++..
T Consensus       150 E~iL~d~~~a~~~~~  164 (329)
T COG1087         150 EEILRDAAKANPFKV  164 (329)
T ss_pred             HHHHHHHHHhCCCcE
Confidence            777777777777544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.94  E-value=0.012  Score=65.43  Aligned_cols=93  Identities=22%  Similarity=0.277  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .+||+|||+ |.||..++..+...|+..+|..+|.++.. ..+.++   ..  ..   ...+++.++++++|+||++.. 
T Consensus         3 ~~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~--~~---~~~~~~~~~~~~aDvVilavp-   72 (735)
T PRK14806          3 FGRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GV--ID---RGEEDLAEAVSGADVIVLAVP-   72 (735)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CC--CC---cccCCHHHHhcCCCEEEECCC-
Confidence            368999998 99999999999988854479999998622 122111   11  00   123466677899999999943 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                                     ...+.++++.+.++. ++.+|+.++
T Consensus        73 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         73 ---------------VLAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           124566667777665 566665444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.93  E-value=0.0028  Score=67.21  Aligned_cols=101  Identities=19%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIia  168 (412)
                      ..++|++||- |.||.++|..|+..|+  +|+.||++..+..  ++.+.........+....++++..+   .+|+||+.
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~~--~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence            3568999998 9999999999999999  9999999763221  2222100000001122344554444   59999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCC
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNP  212 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNP  212 (412)
                      ..               +-+.++++...+.... |+.++|-.||-
T Consensus        80 v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         80 VK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             CC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            42               2244455545555555 77788777764

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=96.91  E-value=0.0047  Score=61.75  Aligned_cols=106  Identities=21%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcc-cCCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSH-CNTPSQVLDFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~-~~~~~~v~~i~~t~d~~~al~--~aDiVIi  167 (412)
                      |||.|+||+|++|+.++..|+..|. ..++.+|.....+   ...++.. ........+++-..++.++++  ++|+||.
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            6899999999999999999998885 2466677542111   1111111 000011113322234445554  4899999


Q ss_pred             cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          168 PAGVPRK--PGMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       168 aag~p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      +|+....  +.....+.+..|+.....+++.+.++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~  114 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY  114 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence            9986431  11233556788898889898888765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.91  E-value=0.0041  Score=62.66  Aligned_cols=67  Identities=22%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -+.+||+|||. |.||..+|..|...|+  +|+..|.......  +.... ..  +.   . .+.++++++||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~-~G--~~---~-~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEA-DG--FE---V-LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHH-CC--Ce---e-CCHHHHHhcCCEEEEcC
Confidence            34578999998 9999999999999998  8988877642111  11111 01  11   1 25667899999999994

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.90  E-value=0.0057  Score=62.62  Aligned_cols=80  Identities=21%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .+||+|||.+|.||+.+|..+... +.  +|+-+|.+.          .          ..++.++.+++||+||++.  
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~d----------~----------~~~~~~~~v~~aDlVilav--   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPAD----------P----------GSLDPATLLQRADVLIFSA--   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCCc----------c----------ccCCHHHHhcCCCEEEEeC--
Confidence            369999998899999999999875 55  899998731          0          1234556799999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      |          +..+.++++++.+......|+++|
T Consensus        60 P----------v~~~~~~l~~l~~~~~~l~~~~iV   84 (370)
T PRK08818         60 P----------IRHTAALIEEYVALAGGRAAGQLW   84 (370)
T ss_pred             C----------HHHHHHHHHHHhhhhcCCCCCeEE
Confidence            3          444455555554432112367776

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0057  Score=58.31  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |+++.|+||+|.+|..++..++..|.  +|+++|.+.
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   35 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINE   35 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            35799999999999999999999998  999999875

>PRK06194 hypothetical protein; Provisional

Probab=96.87  E-value=0.012  Score=56.83  Aligned_cols=79  Identities=23%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~  161 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.++.+       ..
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999998  999999875  2222333322111100 0 1121111222222       25


Q ss_pred             CcEEEEcCCCCC
Q 015172          162 VNVVVIPAGVPR  173 (412)
Q Consensus       162 aDiVIiaag~p~  173 (412)
                      .|+||..+|...
T Consensus        84 id~vi~~Ag~~~   95 (287)
T PRK06194         84 VHLLFNNAGVGA   95 (287)
T ss_pred             CCEEEECCCCCC
Confidence            799999998743

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.86  E-value=0.0037  Score=61.84  Aligned_cols=63  Identities=21%  Similarity=0.360  Sum_probs=46.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||. |.||..++..+...|+  +|.++|+++.   ..++....  .  .   ...+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g--~--~---~~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG--A--V---SVETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC--C--e---ecCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999998  9999998752   12232211  1  1   1234556789999999994

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.85  E-value=0.0011  Score=65.59  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=54.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-C-CCCeEEEEecCchhhhh-----hhhcccCCC-----C-ceeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-P-LVSALHLYDVMNVKGVA-----ADLSHCNTP-----S-QVLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-g-l~~ev~L~Di~~~~g~~-----~dL~~~~~~-----~-~v~~i~~t~d~~~al  159 (412)
                      ++||+-||| |+||.+....++.+ + +  +|.++|++..+-.+     +.+++.+..     + ..+.| .++|.++++
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i--~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-fstdiekai   76 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDI--EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-FSTDIEKAI   76 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCce--EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-eecchHHHh
Confidence            479999998 99999887777665 4 5  99999998622111     122222210     1 12223 468899999


Q ss_pred             CCCcEEEEcCCCCCCC
Q 015172          160 KGVNVVVIPAGVPRKP  175 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~  175 (412)
                      +.+|+|++.+..|.|.
T Consensus        77 ~eadlvfisvntptkt   92 (481)
T KOG2666|consen   77 KEADLVFISVNTPTKT   92 (481)
T ss_pred             hhcceEEEEecCCccc
Confidence            9999999999888653

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.85  E-value=0.0048  Score=58.35  Aligned_cols=35  Identities=34%  Similarity=0.513  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            358999998 9999999999999996 6899999984

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.81  E-value=0.0063  Score=60.66  Aligned_cols=107  Identities=15%  Similarity=-0.001  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcc---c---CCCCceeeecCCCcHHhhcCC--
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSH---C---NTPSQVLDFTGPEELASALKG--  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~---~---~~~~~v~~i~~t~d~~~al~~--  161 (412)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|.+..   ......+..   .   .......+++-..++.+.+++  
T Consensus         6 ~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          6 RKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            46899999999999999999999998  9999987541   111111111   0   001111122222234445554  


Q ss_pred             CcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          162 VNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       162 aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .|+||.+|+......  ......+..|+.-...+++.+.++.
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~  125 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG  125 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc
Confidence            699999998643221  1223334667777788888887766

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.81  E-value=0.0037  Score=65.94  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=61.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +|+|||. |.||.++|..|+..|+  +|++||++..+.  .++... .....+.......++.+.++++|+||++...  
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~~--~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~--   73 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEKT--DEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA--   73 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHHH--HHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence            4899998 9999999999999998  999999986321  122211 0000011111112333345789999988421  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                                   -+.+.+++..+..+. ++.+||-.+|..
T Consensus        74 -------------~~~v~~Vi~~l~~~L~~g~iIID~gns~  101 (467)
T TIGR00873        74 -------------GAPVDAVINQLLPLLEKGDIIIDGGNSH  101 (467)
T ss_pred             -------------cHHHHHHHHHHHhhCCCCCEEEECCCcC
Confidence                         133444556666665 778888887743

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02712 arogenate dehydrogenase

Probab=96.81  E-value=0.014  Score=64.30  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC-CCcEEEE
Q 015172           89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK-GVNVVVI  167 (412)
Q Consensus        89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-~aDiVIi  167 (412)
                      .....+||+|||. |.||..+|..+...|.  +|+.+|.+.....+.+   ..    +.   ..+++++.+. ++|+||+
T Consensus       365 ~~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~---~~~~~~el~~~~aDvVIL  431 (667)
T PLN02712        365 NDGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VS---YFSDADDLCEEHPEVILL  431 (667)
T ss_pred             CCCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----Ce---EeCCHHHHHhcCCCEEEE
Confidence            3345689999998 9999999999998887  8999998752111111   11    11   1245655554 5999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hC-CCeEEEEEcC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NC-PDAFIHIISN  211 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~-p~aiviv~TN  211 (412)
                      +.-                .....++++++.. .. |+++++-++.
T Consensus       432 avP----------------~~~~~~vi~~l~~~~lk~g~ivvDv~S  461 (667)
T PLN02712        432 CTS----------------ILSTEKVLKSLPFQRLKRSTLFVDVLS  461 (667)
T ss_pred             CCC----------------hHHHHHHHHHHHHhcCCCCcEEEECCC
Confidence            942                1233344444443 34 6788765543

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.78  E-value=0.0065  Score=56.15  Aligned_cols=107  Identities=19%  Similarity=0.182  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+||||+|.+|+.++..+..+|+  ||+-+=.+..+-.+.  ... +-. -.++.--+.+++++++-|+||-+-|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~-~i~-q~Difd~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGV-TIL-QKDIFDLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccc-eee-cccccChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  999887776321110  000 000 0122222344568999999999977653


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                       ++..     ..-.+-.+.+...++.. -...++|+.--.
T Consensus        75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVGGAG  107 (211)
T COG2910          75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVGGAG  107 (211)
T ss_pred             -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEcCcc
Confidence             2211     11122344555555542 344555665443

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.78  E-value=0.0054  Score=61.90  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.........  ..   .  ..    ..++++.+++||+|+++.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~---~--~~----~~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL---G--AE----YRPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc---C--CE----ecCHHHHHhhCCEEEEeC
Confidence            3579999998 9999999999988888  999999864211110  00   0  11    135777899999999985

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.78  E-value=0.0076  Score=58.22  Aligned_cols=88  Identities=24%  Similarity=0.350  Sum_probs=61.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCC--cEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGV--NVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a--DiVIiaag~p  172 (412)
                      ||.|+||+|++|+.++..|...|.  +|++++...     .|+.+            ..++.++++++  |+||.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999998  999987641     12211            12334456655  9999998864


Q ss_pred             CCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          173 RKPG--MTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       173 ~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ..+.  .........|+.....+++.+.+..
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~   92 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHG   92 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3221  2334456778888888888877654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02240 UDP-glucose 4-epimerase

Probab=96.77  E-value=0.012  Score=58.69  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hh---hhhhhhccc-C--CCCceeeecCCCcHHhhcC--CC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VK---GVAADLSHC-N--TPSQVLDFTGPEELASALK--GV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~---g~~~dL~~~-~--~~~~v~~i~~t~d~~~al~--~a  162 (412)
                      .+||.|+||+|++|..++..|+..|.  +|+++|...  ..   ....++... .  ......+++-..++.+.++  ++
T Consensus         5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   82 (352)
T PLN02240          5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF   82 (352)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence            36899999999999999999999997  999998643  11   111111110 0  0000112221223333343  68


Q ss_pred             cEEEEcCCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHhhCCCeE
Q 015172          163 NVVVIPAGVPRK-PG-MTRDDLFNINANIVKTLVEAVADNCPDAF  205 (412)
Q Consensus       163 DiVIiaag~p~k-~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~ai  205 (412)
                      |+||.+++.... +. ....+.+..|+.....+++.+.+.....+
T Consensus        83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~  127 (352)
T PLN02240         83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL  127 (352)
T ss_pred             CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence            999999886421 11 23345678888888888888776543333

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.0073  Score=56.95  Aligned_cols=115  Identities=18%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.+.+..   .....++.......  ...+++-..+..+       .+.+
T Consensus         7 k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          7 KTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             cEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5799999999999999999999998  8999887641   11122222211100  0012211112221       2246


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .|+||..+|.......+..+.+..|......+++.+.++. .++.++++|
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            8999999875422222222334456655566666666654 344454443

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.72  E-value=0.0077  Score=59.31  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~  171 (412)
                      |||.|+||+|++|++++..|...|   +|+.+|..... .            ..+++....+.+.++  ++|+||.+|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-~------------~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-Y------------CGDFSNPEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-c------------cCCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence            689999999999999999888877   47777764210 0            011111122334455  58999999875


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          172 PRKP--GMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       172 p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ....  ..........|+.....+++.+++..
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g   96 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG   96 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4211  12223334678888889998888764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.72  E-value=0.0034  Score=63.26  Aligned_cols=63  Identities=24%  Similarity=0.368  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..++. .|.  +|..+|.......    ..     .+   ...+++++.+++||+|+++.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~---~~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YV---DYKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hc---cccCCHHHHHHhCCEEEEeC
Confidence            4579999998 9999999998843 466  8999998642211    00     01   12346788899999999985

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.72  E-value=0.012  Score=50.74  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCe-EEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSA-LHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~e-v~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      |||+|+|++|.||..++..+... ++  + +..+|.+.....-.|+.+....... .+..++|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~--~lv~~v~~~~~~~~g~d~g~~~~~~~~-~~~v~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGF--ELVGAVDRKPSAKVGKDVGELAGIGPL-GVPVTDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTE--EEEEEEETTTSTTTTSBCHHHCTSST--SSBEBS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCc--EEEEEEecCCcccccchhhhhhCcCCc-ccccchhHHHhcccCCEEEEc
Confidence            69999998899999999998885 55  5 4456665411111233221100011 122247888899999999987

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02928 oxidoreductase family protein

Probab=96.72  E-value=0.0085  Score=60.85  Aligned_cols=103  Identities=20%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhh--cccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADL--SHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|..........+  ................++++.++.||+|+++.
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            3579999998 9999999999988888  99999986311111111  00100000000001246788999999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .  ..+         ++-.++.  .+.++..-|+++||+++
T Consensus       235 P--lt~---------~T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        235 T--LTK---------ETAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             C--CCh---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence            2  211         1112221  12333334799999886

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.70  E-value=0.0088  Score=57.05  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |++.|+|+ |.+|.++|..|...|.  +|+++|.++
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDE   33 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCH
Confidence            68999998 9999999999999999  999999997

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=96.66  E-value=0.0099  Score=59.48  Aligned_cols=107  Identities=21%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc----CCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC----NTPSQVLDFTGPEELASALK--GVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~----~~~~~v~~i~~t~d~~~al~--~aDiVI  166 (412)
                      |+||.|+||+|++|+.++..|...|. ..+++.|.....+....+.+.    .......+++...++++.++  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            46899999999999999999999885 246677764311111111110    00000112222234445565  489999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .+||.....  ..........|+.....+++.+.++
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~  115 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY  115 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence            999864321  1123455677888888888888764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.66  E-value=0.013  Score=55.94  Aligned_cols=110  Identities=20%  Similarity=0.163  Sum_probs=61.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc-cCCCCceeeecC-CCcHHhhc-CCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFTG-PEELASAL-KGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~~-t~d~~~al-~~aDiVIia  168 (412)
                      +++||.|+||+|++|..++..|+..|.  +|+++..+...... .+.+ ........++.. ..++.+.+ .++|+||.+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            368999999999999999999999998  88887665421111 0111 011000112211 12344566 689999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +|.....+.  .+....|..-...+++.+.+....-++
T Consensus        93 ~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV  128 (251)
T PLN00141         93 TGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFI  128 (251)
T ss_pred             CCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEE
Confidence            876432111  111223333445566666654433344

>PLN00016 RNA-binding protein; Provisional

Probab=96.66  E-value=0.011  Score=60.25  Aligned_cols=37  Identities=22%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             CCCceEEEE----cCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVL----GAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VI----GAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..++||.|+    ||+|++|..++..|+..|.  +|++++.+.
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            345789999    9999999999999999998  999999875

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.64  E-value=0.017  Score=56.62  Aligned_cols=97  Identities=18%  Similarity=0.257  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ++||++||+ |.||..++..+...|..  .+|...|.++.+..  ++... ++.  .  + ++|..+....+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~-~g~--~--~-~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE-YGV--V--T-TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH-cCC--c--c-cCcHHHHHhhCCEEEEEe-
Confidence            479999998 99999999999998832  48888888763221  22221 121  1  1 456666889999999994 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                         ||            ..+.++.++++...++-+||-+.=.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               22            456777888877446777755554554

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.63  E-value=0.017  Score=56.46  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC-C--CceeeecCCCcHHh-------hc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT-P--SQVLDFTGPEELAS-------AL  159 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~-~--~~v~~i~~t~d~~~-------al  159 (412)
                      .++.+.|.||++.+|..+|..++.+|.  +|+|+.+++  +...+.++.+... .  ..-.+++..++.+.       ..
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            456899999999999999999999999  999999987  4555556665420 0  00112222222221       12


Q ss_pred             CCCcEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPG------MTRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g------~~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      -..|+.|..||...-..      .+-.+++.-|+--...+...+-...   -.+-||+++
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~  142 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIG  142 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            36999999999764221      1234566777655555555544433   134444543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.63  E-value=0.01  Score=56.28  Aligned_cols=116  Identities=20%  Similarity=0.321  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.++  ......++.+...... + .+++...+.++       .+..
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  899999986  2222223332211100 0 11111111111       2345


Q ss_pred             CcEEEEcCCCCCC-C--CC---chhhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-P--GM---TRDDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-~--g~---~r~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||.++|.... +  ..   ...+.+..|..-    .+.+.+.+.+..+.+.|+++|
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            8999999987421 1  11   112234445544    555666653333344454444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.61  E-value=0.014  Score=58.18  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||- |.||..+|..+...|.  +|+.+|.....        ..    ....  ..++++.++.||+|++....
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp~  183 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLPL  183 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCCC
Confidence            3579999998 9999999987777788  99999975211        00    1110  13577889999999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~  214 (412)
                      .  +         ++-.++.  .+.++..-|++++|+++  .++|
T Consensus       184 t--~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd  215 (303)
T PRK06436        184 T--D---------ETRGMIN--SKMLSLFRKGLAIINVARADVVD  215 (303)
T ss_pred             C--c---------hhhcCcC--HHHHhcCCCCeEEEECCCccccC
Confidence            1  1         1111111  22233333899999885  5555

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.57  E-value=0.008  Score=52.28  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||+|+|+ |.+|+.++..|+..|+ .++.|+|-+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            68999998 9999999999999996 7999999985

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02686 cinnamoyl-CoA reductase

Probab=96.55  E-value=0.014  Score=59.38  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc--------CCCCceeeecCCCcHHhhcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC--------NTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~--------~~~~~v~~i~~t~d~~~al~~  161 (412)
                      ..+++|.|+||+|++|++++..|+..|.  +|++++.+.. .....++...        .......+++-..++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4567999999999999999999999998  8887655431 1111122110        000001123222345567889


Q ss_pred             CcEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHhh
Q 015172          162 VNVVVIPAGVPRKPGM--TRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       162 aDiVIiaag~p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      +|.||.+++.....+.  ...++...|+.-...+++.+.+.
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            9999998775322221  12334456788888888887764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.54  E-value=0.011  Score=58.48  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .++|+|+|+ |.+|..+|..|...|.  +|+++|++.....  .+.....    ..+ ...++.+.++++|+||.+...+
T Consensus       151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~--~~~~~g~----~~~-~~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLA--RITEMGL----IPF-PLNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCCC----eee-cHHHHHHHhccCCEEEECCChH
Confidence            468999998 9999999999999897  9999999752111  1111111    111 1235666789999999985211


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~  214 (412)
                               ++  +    .+   .++..-|+++++.+ ++|-.
T Consensus       221 ---------ii--~----~~---~l~~~k~~aliIDlas~Pg~  245 (287)
T TIGR02853       221 ---------VL--T----AD---VLSKLPKHAVIIDLASKPGG  245 (287)
T ss_pred             ---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCC
Confidence                     01  1    11   22223368888766 68876

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.53  E-value=0.014  Score=57.51  Aligned_cols=60  Identities=17%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||. |.||..++..++..|.  +|.+||++..+  ..++....    .   ..+.++.++++++|+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~---~~~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----A---QAAASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----C---eecCCHHHHHhcCCEEEEeC
Confidence            5798 9999999999999998  99999998632  11222211    1   12346777899999999995

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07574 formate dehydrogenase; Provisional

Probab=96.53  E-value=0.0093  Score=61.42  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+-+|.........+  ..    .+.   ...++++.+++||+|++..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~--~~----g~~---~~~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQ--EL----GLT---YHVSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhHh--hc----Cce---ecCCHHHHhhcCCEEEEcC
Confidence            3579999998 9999999999998888  9999998642111110  00    011   1235778899999999984

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.52  E-value=0.009  Score=52.57  Aligned_cols=73  Identities=18%  Similarity=0.244  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|+|+|+ |.||..++..+...+ ..+|.++|.+..  ...+.++....    +. .. ..+.++.++++|+||.+..
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~-~~-~~~~~~~~~~~Dvvi~~~~   90 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IA-IA-YLDLEELLAEADLIINTTP   90 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cc-ee-ecchhhccccCCEEEeCcC
Confidence            478999998 999999999999886 348999999862  22222222110    11 11 1345556899999999975


Q ss_pred             CCC
Q 015172          171 VPR  173 (412)
Q Consensus       171 ~p~  173 (412)
                      .+.
T Consensus        91 ~~~   93 (155)
T cd01065          91 VGM   93 (155)
T ss_pred             CCC
Confidence            543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.51  E-value=0.017  Score=54.08  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus        22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            68999998 9999999999999995 7999999984

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.034  Score=53.39  Aligned_cols=100  Identities=15%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +++.|+||+|.+|..++..++..|.  +|++.|.+......... +........+++-..+..+.+...|++|..||...
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~~   91 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDKQLASLDVLILNHGINP   91 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccCC
Confidence            5789999999999999999999998  99999987521111111 11000001122222334456778999999998743


Q ss_pred             CCCCch---hhHHHhhHHHHHHHHHH
Q 015172          174 KPGMTR---DDLFNINANIVKTLVEA  196 (412)
Q Consensus       174 k~g~~r---~dl~~~N~~i~~~i~~~  196 (412)
                      ....+.   .+.+..|+.-...+++.
T Consensus        92 ~~~~~~~~~~~~~~vN~~g~~~l~~~  117 (245)
T PRK12367         92 GGRQDPENINKALEINALSSWRLLEL  117 (245)
T ss_pred             cCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence            222232   23345565433334433

>PRK05865 hypothetical protein; Provisional

Probab=96.50  E-value=0.015  Score=65.49  Aligned_cols=104  Identities=20%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|.+....    + .........++....++.++++++|+||.+|+...
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~   73 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----W-PSSADFIAADIRDATAVESAMTGADVVAHCAWVRG   73 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCccc
Confidence            6899999999999999999999998  999999864211    0 00111111123223355567899999999987532


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                       +      ....|+.....+++.+.+.... .|+.+|.+
T Consensus        74 -~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~  104 (854)
T PRK05865         74 -R------NDHINIDGTANVLKAMAETGTG-RIVFTSSG  104 (854)
T ss_pred             -c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCc
Confidence             1      2456777777788877765433 34445544

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.50  E-value=0.032  Score=57.94  Aligned_cols=105  Identities=19%  Similarity=0.261  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC-ce-eeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS-QV-LDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +.++|.|+||+|.+|..++..++..|.  +|+++|.+.... ...+.+..... .+ -+++-..+..+.+.+.|++|..+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            356899999999999999999999998  999999875211 11111111110 01 12221223445578999999998


Q ss_pred             CCCCCCCCch---hhHHHhhHH----HHHHHHHHHHh
Q 015172          170 GVPRKPGMTR---DDLFNINAN----IVKTLVEAVAD  199 (412)
Q Consensus       170 g~p~k~g~~r---~dl~~~N~~----i~~~i~~~i~~  199 (412)
                      |.......+.   .+.+..|..    +.+.+.+.+++
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~  290 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT  290 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8754333332   233455654    44444554543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.49  E-value=0.019  Score=55.47  Aligned_cols=68  Identities=21%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||+ |.||..++..+...++ ...+.++|.+..+.  .++.+. .+. ..   ...+..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~--~~l~~~-~~~-~~---~~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIA--ARLAER-FPK-VR---IAKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHH--HHHHHH-cCC-ce---EeCCHHHHHHhCCEEEEEe
Confidence            58999998 9999999999988775 23567788765221  122221 110 11   1245666778999999994

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.49  E-value=0.033  Score=55.83  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=53.9

Q ss_pred             cHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhh
Q 015172          105 IGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDD  181 (412)
Q Consensus       105 vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~d  181 (412)
                      -|.++|..|+..|+  +|++||++..   ......+.+...    .   ..++..++.++||+||.+..           
T Consensus        31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~---~AaS~aEAAa~ADVVIL~LP-----------   90 (341)
T TIGR01724        31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----K---VVSDDKEAAKHGEIHVLFTP-----------   90 (341)
T ss_pred             CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----e---ecCCHHHHHhCCCEEEEecC-----------
Confidence            37899999999999  9999998752   122223333321    1   12456678999999999832           


Q ss_pred             HHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          182 LFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       182 l~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                          |-+.+++++..+.... ++.++|..| +++
T Consensus        91 ----d~aaV~eVl~GLaa~L~~GaIVID~S-TIs  119 (341)
T TIGR01724        91 ----FGKGTFSIARTIIEHVPENAVICNTC-TVS  119 (341)
T ss_pred             ----CHHHHHHHHHHHHhcCCCCCEEEECC-CCC
Confidence                4455555655666666 455554433 444

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.47  E-value=0.017  Score=57.72  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||+ |.||..++..+...|. .+|.++|.+..  ...+.++..     ....   ..++.+.+.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~-----~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGG-----NAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCC-----eEEe---HHHHHHHHhcCCEEEECC
Confidence            4689999998 9999999988887663 48999999763  223332211     1111   135666789999999997


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhh-CCCeEEEEEcCCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADN-CPDAFIHIISNPVN  214 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~aiviv~TNPv~  214 (412)
                      +.|..            ..+..+..   +.. ....+++-.+||-|
T Consensus       247 ~~~~~------------~~~~~~~~---~~~~~~~~~viDlavPrd  277 (311)
T cd05213         247 GAPHY------------AKIVERAM---KKRSGKPRLIVDLAVPRD  277 (311)
T ss_pred             CCCch------------HHHHHHHH---hhCCCCCeEEEEeCCCCC
Confidence            76631            11122221   212 24668888899988

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.015  Score=54.26  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~   40 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQ   40 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCH
Confidence            5799999999999999999999888  899999876

>PRK06182 short chain dehydrogenase; Validated

Probab=96.45  E-value=0.022  Score=54.87  Aligned_cols=113  Identities=20%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-------CCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-------KGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-------~~aDiV  165 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.+....  .++..........+++-..+.++.+       .+.|+|
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            36799999999999999999999998  999999875211  1111111111011222122222223       378999


Q ss_pred             EEcCCCCCC-C--CCc---hhhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPRK-P--GMT---RDDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k-~--g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..+|.... +  ..+   ....+..|..    +.+.+.+.+++.... .+++++
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~is  132 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINIS  132 (273)
T ss_pred             EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            999987432 1  111   1223444543    355556666554433 344443

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.45  E-value=0.0075  Score=58.56  Aligned_cols=106  Identities=24%  Similarity=0.314  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC----CCC-----CeEEEEecCch--hhhhhhhcccCCC--CceeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS----PLV-----SALHLYDVMNV--KGVAADLSHCNTP--SQVLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~----gl~-----~ev~L~Di~~~--~g~~~dL~~~~~~--~~v~~i~~t~d~~~al  159 (412)
                      ..||.++|| |..|.+++.+|...    |+-     ..+.|+|.+-+  .+. .||.+...+  ..........++.|++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~~~~L~eav  102 (255)
T PF03949_consen   25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKDWGSLLEAV  102 (255)
T ss_dssp             G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT--SSHHHHH
T ss_pred             HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCcccccccCHHHHH
Confidence            369999998 99999999888765    874     68999999751  111 233221100  0011111114788999


Q ss_pred             CCC--cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          160 KGV--NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       160 ~~a--DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +++  |++|=+.|.|.              -+-+++++.+.+++++.||+-.|||..
T Consensus       103 ~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  103 KGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HCH--SEEEECSSSTT--------------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred             HhcCCCEEEEecCCCC--------------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence            999  99998876542              234778889999999999999999976

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.43  E-value=0.028  Score=53.60  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecCCCcHH-------hhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      |+|.|+||+|.+|..++..++..|.  .|++.|.++  ......++.+.. ......+++-..+.+       +.+...|
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            6899999999999999999999998  899999876  222223332211 000000111111121       1235789


Q ss_pred             EEEEcCCCC
Q 015172          164 VVVIPAGVP  172 (412)
Q Consensus       164 iVIiaag~p  172 (412)
                      +||..+|..
T Consensus        79 ~li~naG~~   87 (259)
T PRK08340         79 ALVWNAGNV   87 (259)
T ss_pred             EEEECCCCC
Confidence            999999864

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.43  E-value=0.058  Score=52.37  Aligned_cols=68  Identities=21%  Similarity=0.210  Sum_probs=44.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|+|+.|.||..++..+...+-+.-+.++|.+......  .  ..  .   .+...+|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~--~~--~---~i~~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q--GA--L---GVAITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c--CC--C---CccccCCHHHhccCCCEEEECC
Confidence            479999997799999999877765323334458876521111  1  11  1   1223468887788999999763

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.022  Score=52.97  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|+++|.+.
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            36899999999999999999999998  899999976

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.41  E-value=0.0059  Score=56.78  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCC--cEEEEcCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGV--NVVVIPAGVP  172 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a--DiVIiaag~p  172 (412)
                      |.|+||+|++|..++..|..+|.  +|+-+..... ..........  .....++....++.+.+++.  |.||.+++.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~--~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNV--EFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTE--EEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceE--EEEEeeccccccccccccccCceEEEEeeccc
Confidence            68999999999999999999998  7664544431 1111111000  00001122223445566666  9999998875


Q ss_pred             CC--CCCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          173 RK--PGMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       173 ~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      ..  ...+..+.+..|+...+.+.+.+.+...
T Consensus        77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  108 (236)
T PF01370_consen   77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV  108 (236)
T ss_dssp             SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            31  1124456678899999999999998876

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.41  E-value=0.015  Score=54.85  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+|++|.+|..++..++..|.  +|+++|.+.
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~   38 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLND   38 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            5899999999999999999999998  999999986

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.40  E-value=0.0047  Score=56.54  Aligned_cols=66  Identities=20%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.+|..+|..+...|.  +|+.+|.......  ...+..    . .   ..++++.++.||+|++..
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~-~---~~~l~ell~~aDiv~~~~   99 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----V-E---YVSLDELLAQADIVSLHL   99 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----E-E---ESSHHHHHHH-SEEEE-S
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----c-e---eeehhhhcchhhhhhhhh
Confidence            34679999998 9999999999998898  9999999763222  011110    1 1   135778899999999985

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.39  E-value=0.03  Score=53.06  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |+|.|+||+|.+|..++..++..|.  +|+++|.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            6899999999999999999999998  999999875

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.39  E-value=0.023  Score=49.72  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||.|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999999996 6899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.39  E-value=0.052  Score=50.98  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|+++|.+.
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36899999999999999999999998  899999986

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.37  E-value=0.017  Score=55.07  Aligned_cols=34  Identities=35%  Similarity=0.498  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ .+++|+|-+.
T Consensus        22 ~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            58999998 9999999999999995 7999999875

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.37  E-value=0.0057  Score=62.51  Aligned_cols=75  Identities=29%  Similarity=0.391  Sum_probs=45.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |.|+|+ |.||..++..|+..+...+|++.|.+..  ...+.++.........-+.....++++.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 9999999999999876558999999873  33333321111111011121123356678999999999763

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.031  Score=52.61  Aligned_cols=35  Identities=20%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |++|.|+||+|++|..++..++..|.  +|++.|.+.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~   35 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDV   35 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCH
Confidence            46899999999999999999999998  899999986

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.35  E-value=0.024  Score=55.56  Aligned_cols=101  Identities=15%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCc-HHhhc-----CCCcEEEEcC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASAL-----KGVNVVVIPA  169 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al-----~~aDiVIiaa  169 (412)
                      |.|+||+|++|++++..|+..|. ..+.++|..........+.+..    +.+.....+ .++.+     .++|+||.+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            68999999999999999999986 3466778753111000111110    111100011 11122     3799999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +.+..........+..|+....++.+.+.+..
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~  108 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLERE  108 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            86543333344556778888888888887754

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.34  E-value=0.023  Score=55.41  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=65.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hh-hhhhhcccC-CCCceeeecCCCcHHhhcC--CCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KG-VAADLSHCN-TPSQVLDFTGPEELASALK--GVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g-~~~dL~~~~-~~~~v~~i~~t~d~~~al~--~aDiVIiaa  169 (412)
                      ||.|+||+|++|..++..|...|.  +|+++|.... .. ....+.+.. ......++....++++.++  +.|+||.++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a   78 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFA   78 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence            688999999999999999999998  8999886431 11 111111100 0000011111123333443  699999999


Q ss_pred             CCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      |....+.  ....+.+..|+.....+++.+.+.....++
T Consensus        79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  117 (328)
T TIGR01179        79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI  117 (328)
T ss_pred             cccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence            8643221  223345667888888888888766534443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.34  E-value=0.017  Score=57.29  Aligned_cols=66  Identities=18%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||.|||+ |.+|..++..+...|.  +|..+|++.. ...+.++   .  ....   ...++.+.++++|+||.+.
T Consensus       152 g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~---~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        152 GSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPF---HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceee---cHHHHHHHhCCCCEEEECC
Confidence            579999998 9999999999998897  9999999852 2222221   1  1111   1235566789999999985

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.32  E-value=0.028  Score=61.67  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhc--CCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASAL--KGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al--~~aDiVI  166 (412)
                      .|||.|+||+|++|++++..|...+.-.+|+.+|..........+........+.    ++.........+  .++|+||
T Consensus         6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vi   85 (668)
T PLN02260          6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTIM   85 (668)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEEE
Confidence            5799999999999999999998874223899998742100111111000000111    221111122222  6899999


Q ss_pred             EcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+|+......  ....++...|+.....+++.+++...-..+|.+|
T Consensus        86 HlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S  131 (668)
T PLN02260         86 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS  131 (668)
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            9998653211  1234456778888888888887765222343443

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.037  Score=60.19  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh--CCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecC------CCcHHhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM--SPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTG------PEELASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~--~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~------t~d~~~al~~  161 (412)
                      |||.|+||+|++|++++..|+.  .+.  +|++++.+.......++........+.    +++.      ..+++ .+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~-~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA-ELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH-HhcC
Confidence            6899999999999999999984  566  999999865211111111100000011    1110      11233 3489


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +|+||.+|+... ...+..+....|+.-.+.+++.+.+..-..++
T Consensus        78 ~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v  121 (657)
T PRK07201         78 IDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATFH  121 (657)
T ss_pred             CCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEE
Confidence            999999987542 22334455677888888888888775433333

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.30  E-value=0.021  Score=57.26  Aligned_cols=65  Identities=15%  Similarity=0.098  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+|||. |.||..++..|...|+  ++++.+....... ..+....    +.   .+ +..+++++||+||++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~---~~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FK---VG-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CE---EC-CHHHHHhcCCEEEEeC
Confidence            478999998 9999999999999997  7776655431111 1111111    11   12 3556789999999994

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.044  Score=51.93  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++.+.
T Consensus        11 ~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         11 GLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999998  899999875

>PLN02253 xanthoxin dehydrogenase

Probab=96.28  E-value=0.033  Score=53.72  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~   52 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQD   52 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35799999999999999999999998  999999875

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.27  E-value=0.012  Score=54.33  Aligned_cols=77  Identities=23%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceee--ecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--FTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~--i~~t~d~~~al~~aDiVIia  168 (412)
                      .++|.|+|++|.+|..++..++..+.  +|++++.+..  .....++.+.. ...+..  .....+..++++++|+||.+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            47899999889999999999998886  9999998752  22222232111 111211  11112334678999998887


Q ss_pred             CCCC
Q 015172          169 AGVP  172 (412)
Q Consensus       169 ag~p  172 (412)
                      ...+
T Consensus       105 t~~g  108 (194)
T cd01078         105 GAAG  108 (194)
T ss_pred             CCCC
Confidence            5433

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08643 acetoin reductase; Validated

Probab=96.26  E-value=0.048  Score=51.68  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~   36 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNE   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4688999999999999999999998  999999875

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.26  E-value=0.0099  Score=56.74  Aligned_cols=97  Identities=22%  Similarity=0.363  Sum_probs=61.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCC--eEEEEecCc----hhh-----hhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVS--ALHLYDVMN----VKG-----VAADLSHCNTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~--ev~L~Di~~----~~g-----~~~dL~~~~~~~~v~~i~~t~d~~~al~~  161 (412)
                      .+||.|+|| |.+|.+++..|...|+ +  +|.++|.+.    .+.     +..++.+.. ..  ...  ..++.+++++
T Consensus        25 ~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~--~~~--~~~l~~~l~~   97 (226)
T cd05311          25 EVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP--EKT--GGTLKEALKG   97 (226)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-cc--Ccc--cCCHHHHHhc
Confidence            368999998 9999999999999886 5  799999983    111     112222111 00  011  1256568999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +|+||-+.+    +|+     +  +    .++.+.+   .++.+++..+||..
T Consensus        98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~  132 (226)
T cd05311          98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVP  132 (226)
T ss_pred             CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCC
Confidence            999999864    343     1  1    1222322   36777777889975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN03139 formate dehydrogenase; Provisional

Probab=96.26  E-value=0.015  Score=59.85  Aligned_cols=94  Identities=21%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.+|.........  .+..    +.   ...++++.+++||+|++....
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g----~~---~~~~l~ell~~sDvV~l~lPl  265 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG----AK---FEEDLDAMLPKCDVVVINTPL  265 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC----ce---ecCCHHHHHhhCCEEEEeCCC
Confidence            4579999998 9999999999988888  999999864211110  0100    11   124678889999999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .           .++-.++.  .+.+...-|++++|+.+
T Consensus       266 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        266 T-----------EKTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             C-----------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence            1           11222221  12333334889998875

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.25  E-value=0.026  Score=55.04  Aligned_cols=89  Identities=22%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +|||+|||. |.||..++..+...+. +.-+.++|.+....  .++... ..  ...   .+|+++.+.++|+||++++ 
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a--~~~a~~-~~--~~~---~~~~~ell~~~DvVvi~a~-   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKA--ENLASK-TG--AKA---CLSIDELVEDVDLVVECAS-   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHH--HHHHHh-cC--Cee---ECCHHHHhcCCCEEEEcCC-
Confidence            479999998 9999999988876541 22356788875221  122111 11  111   2567766699999999953 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                                     -....+++..+.+...+.++
T Consensus        71 ---------------~~~~~~~~~~al~~Gk~Vvv   90 (265)
T PRK13304         71 ---------------VNAVEEVVPKSLENGKDVII   90 (265)
T ss_pred             ---------------hHHHHHHHHHHHHcCCCEEE
Confidence                           13335566666555566444

>PRK05717 oxidoreductase; Validated

Probab=96.25  E-value=0.018  Score=54.77  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHH-------hhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELA-------SALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~a  162 (412)
                      ..++|.|+||+|++|..++..|+..|.  +|++.|.+...  ....++.. .......+++...+..       +.+...
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALGE-NAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcCC-ceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            346799999999999999999999997  99999987521  11111111 0000001111111111       123457


Q ss_pred             cEEEEcCCCCCCCC-----Cch---hhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG-----MTR---DDLFNINANIVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g-----~~r---~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      |+||..+|......     .+.   ...+..|+.-...+.+.+.++.  ..+.+|++|
T Consensus        86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~s  143 (255)
T PRK05717         86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLA  143 (255)
T ss_pred             CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence            99999998753211     122   2345566655555555554432  234555554

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.033  Score=53.11  Aligned_cols=35  Identities=34%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36899999999999999999999998  999999875

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=96.24  E-value=0.023  Score=57.85  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhhcccC-CCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCN-TPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL~~~~-~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      +.++.|+||+|++|.++...|..++..-+++++|....    ..+-.++ +.. ......++....+...++.++ .||+
T Consensus         4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh   81 (361)
T KOG1430|consen    4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVVH   81 (361)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence            46899999999999999999999985559999999763    1111111 111 111112233334566789999 5666


Q ss_pred             cCCCC-CCCCC-chhhHHHhhHHHHHHHHHHHHhhC
Q 015172          168 PAGVP-RKPGM-TRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       168 aag~p-~k~g~-~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .+..+ ..-.+ .|.-...-|+.--+.+.+.+.+..
T Consensus        82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~  117 (361)
T KOG1430|consen   82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG  117 (361)
T ss_pred             eccccCccccccchhhheeecchhHHHHHHHHHHhC
Confidence            44332 22233 355556678888888888888765

>PRK12320 hypothetical protein; Provisional

Probab=96.22  E-value=0.027  Score=62.16  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|+.++..|...|.  +|+.+|.....     ..+........++.. ..+.++++++|+||.+++...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRVDYVCASLRN-PVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCceEEEccCCC-HHHHHHhcCCCEEEEcCccCc
Confidence            6899999999999999999999998  99999975421     111111100112211 124456789999999987531


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                        ..    ....|+....++++.+++...  .+|.+|
T Consensus        73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence              11    123577777888888776553  344454

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.21  E-value=0.028  Score=53.48  Aligned_cols=96  Identities=20%  Similarity=0.290  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +||++||. |.+|..+.-.+-... -+.-+.+||.+..+..  .+.......      ..+++.+.+.+.|+||++|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~------~~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRR------CVSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCC------ccccHHHHhhccceeeeeCC--
Confidence            68999998 999999997766553 2467888998763221  122111111      12456666799999999975  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                    .+-+++++.++-+...|.+++-++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          5678899999988888988855544444

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.20  E-value=0.03  Score=53.15  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~  161 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.++  ......++.+...... + .+++-..+++       +.+..
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999998  999999886  2222222222110000 0 0111111122       22346


Q ss_pred             CcEEEEcCCCCCC-CC--Cch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEcC
Q 015172          162 VNVVVIPAGVPRK-PG--MTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIISN  211 (412)
Q Consensus       162 aDiVIiaag~p~k-~g--~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~TN  211 (412)
                      .|+||..+|.... +-  .+.   .+.+..|+.-...+.+.+.++.   ..+.++++|.
T Consensus        88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss  146 (255)
T PRK07523         88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS  146 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence            8999999987531 11  111   2334566654444555554442   2345555553

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.18  E-value=0.025  Score=57.31  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|||+ |.+|+.+|..|+..|+ +.|.|+|.+.
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            368999998 9999999999999995 7999999984

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.18  E-value=0.025  Score=54.49  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus        25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            58999998 9999999999999995 7999999985

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.052  Score=52.43  Aligned_cols=35  Identities=14%  Similarity=0.028  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   38 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSE   38 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCH
Confidence            35799999999999999999999998  899999875

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.037  Score=51.94  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||+.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999998  999999875

>PRK06196 oxidoreductase; Provisional

Probab=96.14  E-value=0.051  Score=53.74  Aligned_cols=113  Identities=18%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++..  .....++....  ....+++-..+.+       +.+.+.|
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~--~~~~Dl~d~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE--VVMLDLADLESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe--EEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence            35799999999999999999999998  9999998752  21122221110  0001111111111       1235789


Q ss_pred             EEEEcCCCCCCCCC-c---hhhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPGM-T---RDDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g~-~---r~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||....+.. +   -...+..|.    .+.+.+.+.+.+.. .+.||++|
T Consensus       102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  155 (315)
T PRK06196        102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS  155 (315)
T ss_pred             EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence            99999986432211 1   122234443    34555666665443 34554544

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.12  E-value=0.1  Score=49.03  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~   39 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE   39 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence            46899999999999999999999998  999999865

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07069 short chain dehydrogenase; Validated

Probab=96.12  E-value=0.042  Score=51.68  Aligned_cols=113  Identities=25%  Similarity=0.322  Sum_probs=64.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-c--hhhhhhhhcccCCCC----ceeeecCCCcHH-------hhcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-N--VKGVAADLSHCNTPS----QVLDFTGPEELA-------SALK  160 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-~--~~g~~~dL~~~~~~~----~v~~i~~t~d~~-------~al~  160 (412)
                      ||.|+||+|.+|..++..++..|.  +|++.|.+ .  ......++.......    ...+++...+++       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            588999999999999999999998  99999987 3  222222222111000    001222111221       2245


Q ss_pred             CCcEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|+||..+|.....   ..+.   ...+..|+.    ..+.+.+.+.+.... .|++++
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~s  137 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNIS  137 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEec
Confidence            789999999865321   1122   223455655    666777777654434 444444

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.12  E-value=0.033  Score=53.77  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            369999998 9999999999999995 7999999975

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.12  E-value=0.024  Score=55.81  Aligned_cols=105  Identities=26%  Similarity=0.337  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC----CCC-----CeEEEEecCch--hhhhhhhcccC--CCCceeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS----PLV-----SALHLYDVMNV--KGVAADLSHCN--TPSQVLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~----gl~-----~ev~L~Di~~~--~g~~~dL~~~~--~~~~v~~i~~t~d~~~al  159 (412)
                      ..||.|.|| |..|.+++.+|...    |+-     ..+.++|.+-+  ... .||.+..  +...... ....++.|++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~i  101 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEVV  101 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHHH
Confidence            468999998 99999999888764    762     58999998741  111 1122111  0000110 1235788999


Q ss_pred             C--CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          160 K--GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       160 ~--~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +  ++|++|=+.+.+   |           -+-+++++.+.++|++.||+-.|||..
T Consensus       102 ~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312         102 KAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            9  999998875544   1           233678888888999999999999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.051  Score=51.31  Aligned_cols=114  Identities=20%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcC----CCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALK----GVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~----~aDiVIia  168 (412)
                      .+|.|+||+|.+|..++..|+.+|.  +|++.|.+.... ...+.. ........+++-..+.++.++    ..|++|..
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~   78 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDELHTQS-ANIFTLAFDVTDHPGTKAALSQLPFIPELWIFN   78 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc-CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEc
Confidence            5789999999999999999999998  899999876211 111110 011100112221222222232    34788888


Q ss_pred             CCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          169 AGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +|......   .+.   .+.+..|+.-...+.+.+..+. ....+++++
T Consensus        79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~is  127 (240)
T PRK06101         79 AGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVG  127 (240)
T ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEe
Confidence            77532111   222   2345667766666776666543 344454444

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.046  Score=52.57  Aligned_cols=102  Identities=16%  Similarity=0.011  Sum_probs=57.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aDiV  165 (412)
                      ++|.|+||+|++|..++..|+..|.  .|++.+.+.. .....+...........+++-..+..       +.+.+.|+|
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVV   80 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999998  8999988751 11111111111000000111111111       123568999


Q ss_pred             EEcCCCCCCCC-C--ch---hhHHHhhHHHHHHHHHHH
Q 015172          166 VIPAGVPRKPG-M--TR---DDLFNINANIVKTLVEAV  197 (412)
Q Consensus       166 Iiaag~p~k~g-~--~r---~dl~~~N~~i~~~i~~~i  197 (412)
                      |..+|...... .  +.   ...+..|..-...+.+.+
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~  118 (276)
T PRK06482         81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAA  118 (276)
T ss_pred             EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            99998754221 1  11   223445666555566665

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.06  E-value=0.029  Score=56.80  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|+|+ |.+|+.+|..|+..|+ ++|.|+|-+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            368999998 9999999999999996 7999999974

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.027  Score=53.04  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..++..|.  +|+++|.++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~   40 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA   40 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36799999999999999999999997  999999875

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.039  Score=51.74  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~  160 (412)
                      .++|.|+||+|.+|..++..++.+|.  ++++.+.+.   ......++........ + .+++-..++++.       +.
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999998  888877643   1222222221111000 0 011111122222       34


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +.|+||..+|......   .+.   ...+..|+.-...+++.+.+.. +++.++++|
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  139 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS  139 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence            7899999998643111   111   2234455554444554544433 445555554

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.04  E-value=0.073  Score=50.56  Aligned_cols=35  Identities=34%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|++|..++..|+..|.  +|+++|.++
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            35799999999999999999999998  999999875

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=96.04  E-value=0.035  Score=56.34  Aligned_cols=82  Identities=11%  Similarity=0.031  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHhCCCCCeEEEEecCchh--h-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhh
Q 015172          105 IGQPLALLIKMSPLVSALHLYDVMNVK--G-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDD  181 (412)
Q Consensus       105 vG~~iA~~l~~~gl~~ev~L~Di~~~~--g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~d  181 (412)
                      =|..+|..|+..|.  +|+++|.++..  . ....+....    +.   .++|..+++++||+||++...          
T Consensus        31 gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~G----i~---~asd~~eaa~~ADvVIlaVP~----------   91 (342)
T PRK12557         31 GGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDAG----VK---VVSDDAEAAKHGEIHILFTPF----------   91 (342)
T ss_pred             CHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHCC----CE---EeCCHHHHHhCCCEEEEECCC----------
Confidence            37888999999998  99999997631  1 111122111    21   234566688999999999421          


Q ss_pred             HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          182 LFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       182 l~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                           -..+++++..+.... ++.+|+..+
T Consensus        92 -----~~~v~~Vl~~L~~~L~~g~IVId~S  116 (342)
T PRK12557         92 -----GKKTVEIAKNILPHLPENAVICNTC  116 (342)
T ss_pred             -----cHHHHHHHHHHHhhCCCCCEEEEec
Confidence                 123455556666666 566665443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.03  E-value=0.11  Score=49.38  Aligned_cols=116  Identities=15%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHH-------hhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELA-------SALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~-------~al~  160 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|.+.  ......++.+......+.    +++...+..       +.+.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999998  999999875  222222222211000011    111111111       1234


Q ss_pred             CCcEEEEcCCCCCCC---CCchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172          161 GVNVVVIPAGVPRKP---GMTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      ..|+||.++|.+...   ..+..+   .+..|+.    +.+.+.+.+.+..+++.++.++.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss  141 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINS  141 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            679999999875422   122222   2334443    34555555554443455655554

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.03  E-value=0.071  Score=50.10  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..|+..|.  +|+++|.+.
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~   37 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR   37 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            46899999999999999999999998  999999876

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.046  Score=52.36  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          7 KVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999998  999999975

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.01  E-value=0.034  Score=60.56  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=80.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~  171 (412)
                      ..+|.|+|. |.+|+.++..|...++  +++++|.|+..  +..+.+...+....+.+-.+-+ +..+++||.||.+.+.
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d  474 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE  474 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence            468999998 9999999999999998  99999998732  1122222221111111100001 1246899999998321


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEE-EEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH-IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aivi-v~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~l  250 (412)
                      +           ..|    ..++..+++++|+..++ -+.|+.+      .+.+++.+   .+.|+-=+..-+.++-...
T Consensus       475 ~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~~~~  530 (601)
T PRK03659        475 P-----------EDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELGRKT  530 (601)
T ss_pred             H-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHHHHH
Confidence            1           333    34556677788986554 4456555      44455553   3344322322223343344


Q ss_pred             HHHcCCCCCCee
Q 015172          251 AQKKNLKLIDVD  262 (412)
Q Consensus       251 a~~l~v~~~~V~  262 (412)
                      =..+|+++++++
T Consensus       531 L~~lg~~~~~~~  542 (601)
T PRK03659        531 LVSLGMHPHQAQ  542 (601)
T ss_pred             HHHcCCCHHHHH
Confidence            456677765554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.00  E-value=0.017  Score=57.42  Aligned_cols=56  Identities=18%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+|.||.++|..|...|.  +|.+++...                       .++++..+.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            457999999966999999999999998  899986531                       2466778999999999886


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            6

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.032  Score=52.79  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++.+|.  +|++.|.++
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~   39 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA   39 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            36899999999999999999999998  999999876

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=96.00  E-value=0.037  Score=53.96  Aligned_cols=102  Identities=15%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh----hcCCCcEEEEcCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS----ALKGVNVVVIPAGV  171 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~----al~~aDiVIiaag~  171 (412)
                      |.|+||+|++|+.++..|...|. .+|+++|..........+.....   ..++......+.    .+.++|+||.+|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVI---ADYIDKEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheee---eccCcchhHHHHHHhhccCCCCEEEECccc
Confidence            56999999999999999999984 36888886541111011110000   001111111221    12589999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +.....+..+....|+.....+++.+.+..
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~  106 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKG  106 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhC
Confidence            532223344556778888888888887764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.00  E-value=0.043  Score=54.24  Aligned_cols=112  Identities=18%  Similarity=0.305  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecC-------CCcHHhhcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTG-------PEELASALKG  161 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~-------t~d~~~al~~  161 (412)
                      ....|.|.||++.+|..+|+.++.+|-  .++|+|+|.  .+..+..+.+.+ .....-+++-       ....++...+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            346788999988999999999999997  999999997  233333333211 0000001110       1223456789


Q ss_pred             CcEEEEcCCC-CCCCCCc-hhhHHH----hh----HHHHHHHHHHHHhhCCCeEE
Q 015172          162 VNVVVIPAGV-PRKPGMT-RDDLFN----IN----ANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       162 aDiVIiaag~-p~k~g~~-r~dl~~----~N----~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .|++|..||+ +-++..+ .++.+.    -|    ..+.+++.+.+.+.+ ++.|
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHI  168 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHI  168 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceE
Confidence            9999999997 4444432 122222    22    467788888888765 4444

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.039  Score=52.31  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~   40 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA   40 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            36789999999999999999999998  999999875

>PRK06128 oxidoreductase; Provisional

Probab=95.99  E-value=0.057  Score=52.98  Aligned_cols=116  Identities=22%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCCCCc-e-eeecCCCcH-------Hhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTPSQ-V-LDFTGPEEL-------ASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~-v-~~i~~t~d~-------~~al  159 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.+.    .......+........ + .+++-..+.       .+.+
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999998  888877643    1111122221111100 0 011111111       1234


Q ss_pred             CCCcEEEEcCCCCC--CC--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPR--KP--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~--k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ...|+||..+|...  .+  ..+.   ...+..|+.-...+++.+.++. +.+.||+++
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s  191 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG  191 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence            57899999998642  21  1222   2345667665566666666554 455665554

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.99  E-value=0.027  Score=60.32  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||- |.||..+|..+...|.  +|+.||.........++   .    ..   ...++++.+++||+|++..
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~---~~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VE---LVDDLDELLARADFITVHT  201 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CE---EcCCHHHHHhhCCEEEEcc
Confidence            3478999998 9999999999988888  99999975321111111   1    11   1235778899999999985

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.98  E-value=0.0063  Score=59.03  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC---------CeEEEEecCch--hhhhhhhcccCCC--CceeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV---------SALHLYDVMNV--KGVAADLSHCNTP--SQVLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~---------~ev~L~Di~~~--~g~~~dL~~~~~~--~~v~~i~~t~d~~~al  159 (412)
                      ..||.|.|| |..|.++|.+|...+.-         ..++++|..-+  .+. .++.+...+  ...+.-....++.+++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~~~~~~L~eav  102 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPERESGDLEDAV  102 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcccccCCHHHHH
Confidence            468999998 99999999888764431         28999998741  111 112110000  0001011235788999


Q ss_pred             C--CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC--CcHHHHHHHHHHhCCCCCCCe
Q 015172          160 K--GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN--STVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       160 ~--~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~--~~~pI~t~i~~~~sg~~~~kv  235 (412)
                      +  ++|++|=+.+.|.              -+-+++++.+.++|++.||+-.|||..  -.   ..+-+++++  +...+
T Consensus       103 ~~~kptvlIG~S~~~g--------------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~---tpe~a~~~t--~G~ai  163 (254)
T cd00762         103 EAAKPDFLIGVSRVGG--------------AFTPEVIRAXAEINERPVIFALSNPTSKAEC---TAEEAYTAT--EGRAI  163 (254)
T ss_pred             HhhCCCEEEEeCCCCC--------------CCCHHHHHHHhhcCCCCEEEECCCcCCcccc---CHHHHHhhc--CCCEE
Confidence            9  9999998766552              233678888888999999999999985  22   234455553  23457


Q ss_pred             Eecc
Q 015172          236 FGVT  239 (412)
Q Consensus       236 iGlt  239 (412)
                      |+..
T Consensus       164 ~AtG  167 (254)
T cd00762         164 FASG  167 (254)
T ss_pred             EEEC
Confidence            7764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.051  Score=50.98  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++++.++
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~   41 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLA   41 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            46899999999999999999999998  899998875

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.97  E-value=0.073  Score=58.79  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=45.7

Q ss_pred             CCcCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           58 TSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        58 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.|..-++.....=-|.+.++.|-+..| ...+-..++|.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus       380 ~~~~~~~~~~~f~~eyw~~e~~kl~~~~-~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~  448 (676)
T TIGR02632       380 SEYVSLPEQEAFDIEYWPLEEAKLRRMP-KEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL  448 (676)
T ss_pred             cceecCchhhccchhhhhhhHHhhccCC-CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            4455555444442234444554443322 11223356899999999999999999999998  999999986

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.97  E-value=0.044  Score=52.05  Aligned_cols=114  Identities=21%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDi  164 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++... ......+++...+.++       .+...|+
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-AIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999998  9999998862  2222222111 0000001211122222       2347899


Q ss_pred             EEEcCCCCCC-CC--Cc---hhhHHHhhHHHHHHHHHHHHhh----CCCeEEEEEc
Q 015172          165 VVIPAGVPRK-PG--MT---RDDLFNINANIVKTLVEAVADN----CPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k-~g--~~---r~dl~~~N~~i~~~i~~~i~~~----~p~aiviv~T  210 (412)
                      +|.++|.... +-  .+   -.+.+..|+.-...+.+.+.++    .+++.|++++
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s  139 (257)
T PRK07067         84 LFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMA  139 (257)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            9999886421 11  11   1223555655444455444332    2345555554

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.97  E-value=0.024  Score=57.09  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||. |.+|+.+|..+..-|.  +|..||....+....          ........++++-|+.||+|++..
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~----------~~~~~~~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG----------VDGVVGVDSLDELLAEADILTLHL  205 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc----------cccceecccHHHHHhhCCEEEEcC
Confidence            579999998 9999999999999999  999999843211110          001112346778899999999974

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=95.96  E-value=0.019  Score=56.49  Aligned_cols=79  Identities=19%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        88 ~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      ..|...+||+|+||+|+||++++-.|+..|.  +|...|.... +....+.|.........+. ..-...-+..+|.|+.
T Consensus        22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~Iyh   97 (350)
T KOG1429|consen   22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYH   97 (350)
T ss_pred             ccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhh
Confidence            3455679999999999999999999999997  9999998642 1222233332111111111 1111236789999998


Q ss_pred             cCC
Q 015172          168 PAG  170 (412)
Q Consensus       168 aag  170 (412)
                      .|.
T Consensus        98 LAa  100 (350)
T KOG1429|consen   98 LAA  100 (350)
T ss_pred             hcc
Confidence            764

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.037  Score=53.40  Aligned_cols=34  Identities=12%  Similarity=-0.061  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.|.|+||+|.+|..++..++.+|.  +|++.|.+.
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~   37 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT   37 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4689999999999999999999997  899999875

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.062  Score=51.12  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~   35 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNE   35 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999997  999999875

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.045  Score=52.96  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~   38 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKE   38 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5789999999999999999999998  999999875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.91  E-value=0.05  Score=56.57  Aligned_cols=89  Identities=19%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+ ..+..+   .  ...      .+.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G--~~~------~~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G--YEV------MTMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C--CEE------ccHHHHHcCCCEEEECCC
Confidence            3579999998 9999999999999997  89999998732 222211   1  111      123457899999999965


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHH-HHhhCCCeEEEEEcCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEA-VADNCPDAFIHIISNP  212 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~-i~~~~p~aiviv~TNP  212 (412)
                      .+               .++.   .. ++...+++++++++.+
T Consensus       267 ~~---------------~~i~---~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIIT---GEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHH---HHHHhcCCCCcEEEEeCCC
Confidence            33               2222   22 3333378999998865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.078  Score=50.86  Aligned_cols=34  Identities=35%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |+|.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~   34 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE   34 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4789999999999999999999998  899999875

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.039  Score=52.19  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~   49 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE   49 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  899999875

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.89  E-value=0.076  Score=52.08  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEE-EEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALH-LYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~-L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|||. |.||..++..+...  ++  +|+ ++|.+..+.  .++... ... ..   ..+++++.+.++|+||+++
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a--~~~a~~-~g~-~~---~~~~~eell~~~D~Vvi~t   75 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRH--ADFIWG-LRR-PP---PVVPLDQLATHADIVVEAA   75 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHH--HHHHHh-cCC-Cc---ccCCHHHHhcCCCEEEECC
Confidence            479999998 99999999888763  44  665 788875221  112111 000 01   1246777778999999996


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      +
T Consensus        76 p   76 (271)
T PRK13302         76 P   76 (271)
T ss_pred             C
Confidence            4

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.054  Score=51.86  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|++|..++..++.+|.  +|++.|.+.
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~   44 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTE   44 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999998  999999975

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.88  E-value=0.049  Score=55.20  Aligned_cols=71  Identities=28%  Similarity=0.383  Sum_probs=49.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|.|+||+|.||+.++..|+...-+.+|++++.+..  .....++.+    .   .+   .++++++.++|+||.+++
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----~---~i---~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----G---KI---LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----c---cH---HhHHHHHccCCEEEECCc
Confidence            46899999989999999999976422458999998752  222222211    1   11   245678999999999988


Q ss_pred             CCC
Q 015172          171 VPR  173 (412)
Q Consensus       171 ~p~  173 (412)
                      .+.
T Consensus       225 ~~~  227 (340)
T PRK14982        225 MPK  227 (340)
T ss_pred             CCc
Confidence            774

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.87  E-value=0.025  Score=52.79  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      -..++|+|||-+..||.++|.+|+.++-  .|.+.|++.-.  .....+.|..++  ....  +.++.+.++.|||||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~~--~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTDE--EAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccch--hhHHHHHhhhCCEEEEc
Confidence            3457999999988999999999999987  99999987511  111112222211  0000  11256678999999999


Q ss_pred             CCCCC
Q 015172          169 AGVPR  173 (412)
Q Consensus       169 ag~p~  173 (412)
                      +|.|.
T Consensus       134 vG~~~  138 (197)
T cd01079         134 VPSPN  138 (197)
T ss_pred             cCCCC
Confidence            98773

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.85  E-value=0.019  Score=54.04  Aligned_cols=94  Identities=21%  Similarity=0.254  Sum_probs=58.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP  175 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~  175 (412)
                      |+|+||+|.+|..++..|...+.  +|+.+=.+........|.+........++.-..++.++|+|+|.||++.+...  
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~--   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH--   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC--
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch--
Confidence            78999999999999999999887  78887666533233334443221101122122456678999999999865332  


Q ss_pred             CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          176 GMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       176 g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                              ....+....+++...+..
T Consensus        77 --------~~~~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   77 --------PSELEQQKNLIDAAKAAG   94 (233)
T ss_dssp             --------CCHHHHHHHHHHHHHHHT
T ss_pred             --------hhhhhhhhhHHHhhhccc
Confidence                    111344455666666555

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06924 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.044  Score=51.74  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |++|.|+||+|.+|..++..|+.+|.  +|++.+.+.
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            35799999999999999999999998  899999865

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.064  Score=50.87  Aligned_cols=34  Identities=35%  Similarity=0.339  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4699999999999999999999997  899999875

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.061  Score=49.65  Aligned_cols=76  Identities=26%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc--CCCCceeeecCCCcHHhhcC---CCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC--NTPSQVLDFTGPEELASALK---GVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~--~~~~~v~~i~~t~d~~~al~---~aDiVIi  167 (412)
                      +++|.|+||+|.+|..++..|+.+ .  +|+++|.+....  .++.+.  .......+++...++++.++   +.|+||.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERL--DELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHH--HHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999888 5  899999875221  111110  01000112211223333343   6999999


Q ss_pred             cCCCCC
Q 015172          168 PAGVPR  173 (412)
Q Consensus       168 aag~p~  173 (412)
                      ++|.+.
T Consensus        78 ~ag~~~   83 (227)
T PRK08219         78 NAGVAD   83 (227)
T ss_pred             CCCcCC
Confidence            998753

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.051  Score=52.19  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++++.+.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~   41 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP   41 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            36899999999999999999999998  999999875

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.065  Score=50.29  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++++.|+|++|.+|..++..++.+|.  .|++.|.+.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            56799999999999999999999998  899999875

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.1  Score=50.11  Aligned_cols=114  Identities=17%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc---CCCCceeeecCCCcHHhh------cCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC---NTPSQVLDFTGPEELASA------LKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~---~~~~~v~~i~~t~d~~~a------l~~a  162 (412)
                      +.+.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++...   .......+++...+.++.      +...
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4678899999999999999999998  899999875  22222233221   100000112111122222      2468


Q ss_pred             cEEEEcCCCCCCC---CCchhh---HHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKP---GMTRDD---LFNIN----ANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~---g~~r~d---l~~~N----~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..+|.+...   ..+..+   .+..|    ..+.+.+.+.+.+.. .+.||++|
T Consensus        87 D~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~is  143 (263)
T PRK08339         87 DIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYST  143 (263)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            9999999875421   122222   23334    345666666665543 34454544

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.072  Score=51.71  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus         7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~   40 (275)
T PRK05876          7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDK   40 (275)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4688999999999999999999998  899999876

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.065  Score=51.27  Aligned_cols=34  Identities=21%  Similarity=0.121  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++.+|.  +|++.+.+.
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4799999999999999999999998  899999875

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.078  Score=50.37  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|+++|.+.
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            36899999999999999999999998  999999876

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.76  E-value=0.026  Score=51.50  Aligned_cols=55  Identities=29%  Similarity=0.480  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCCc-HHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGI-GQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~v-G~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..+||.|||+ |.| |..++..|...|.  .|.+.+.+.                       .++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            3579999999 875 8889999999887  788887531                       245568999999999987


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .|
T Consensus        97 ~~   98 (168)
T cd01080          97 KP   98 (168)
T ss_pred             CC
Confidence            76

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.063  Score=52.05  Aligned_cols=102  Identities=23%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             ceEE-EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCC-ce-eeecCCCcHHhh------cCCC
Q 015172           94 FKVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPS-QV-LDFTGPEELASA------LKGV  162 (412)
Q Consensus        94 ~KV~-VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~-~v-~~i~~t~d~~~a------l~~a  162 (412)
                      +|+. |.|| |.+|..++..++ .|.  +|++.|.+..  .....++.+..... .+ -+++...+.++.      +...
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4554 4565 999999999886 776  9999998752  22222232211100 01 122111111111      3468


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      |++|..||.... ..+-.+.+..|+.-...+.+.+.++
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~  114 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKV  114 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999997532 2233445666765555555555443

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.063  Score=50.80  Aligned_cols=35  Identities=26%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   41 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA   41 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            36899999999999999999999997  899999875

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.74  E-value=0.037  Score=59.34  Aligned_cols=64  Identities=22%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.||.........++       ... .   .++++.+++||+|++..
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~-~---~~l~ell~~aDiV~l~l  202 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVE-L---VSLDELLARADFITLHT  202 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCE-E---EcHHHHHhhCCEEEEcc
Confidence            3578999998 9999999999998888  99999975321111111       111 1   15777899999999985

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=95.74  E-value=0.031  Score=56.23  Aligned_cols=71  Identities=15%  Similarity=0.149  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+++|||+ |.+|...+..+....-+.+|.++|++.  ....+.++.+.  ...+.   ...+.++++++||+||.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~---~~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVR---AATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEE---EeCCHHHHhccCCEEEEec
Confidence            478999998 999998766555544457999999987  33344444322  11122   2357788999999999874

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.73  E-value=0.04  Score=52.68  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36789999999999999999999998  999999875

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.73  E-value=0.068  Score=55.04  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC-CCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT-PSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~-~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++||+|+||+|++|..+...|..++.. +|+++..+...+....-.+... ......+. ..+.+ .++++|+|+.+.+
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~~~-~~~~~DvVf~Alp  113 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVKDA-DFSDVDAVFCCLP  113 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCCHH-HhcCCCEEEEcCC
Confidence            4579999999999999999999888532 8888876542221111111100 01111111 12222 4799999999853

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.095  Score=50.15  Aligned_cols=112  Identities=14%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCch---hhhhhhhcccCC-CCce--eeecCCCcHHhhc------
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNV---KGVAADLSHCNT-PSQV--LDFTGPEELASAL------  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~---~g~~~dL~~~~~-~~~v--~~i~~t~d~~~al------  159 (412)
                      .++|.|+||+|.+|..++..++.+| .  .|++.+.+..   .....++..... ....  -+++...+.++.+      
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            3579999999999999999999884 6  8999998752   222333332111 1000  1121112211111      


Q ss_pred             CCCcEEEEcCCCCCCCCCch---h---hHHHhhHH----HHHHHHHHHHhhCCCeEE
Q 015172          160 KGVNVVVIPAGVPRKPGMTR---D---DLFNINAN----IVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r---~---dl~~~N~~----i~~~i~~~i~~~~p~aiv  206 (412)
                      .+.|++|..+|.........   .   +.+..|..    +.+.+.+.+.+.....++
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv  142 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQII  142 (253)
T ss_pred             CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEE
Confidence            37999999888753221111   1   23455543    335566666654443444

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.052  Score=53.29  Aligned_cols=36  Identities=19%  Similarity=0.083  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..++|.|+||+|++|..++..|+..|.  +|++.+.+.
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~   50 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNL   50 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346799999999999999999999998  899999875

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.69  E-value=0.063  Score=49.96  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++.+|.  +|.+++.++
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            6899999999999999999999998  899999876

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.089  Score=51.67  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            36799999999999999999999998  999999986

>PRK08223 hypothetical protein; Validated

Probab=95.69  E-value=0.059  Score=53.36  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ .++.|+|-|.
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            58999998 9999999999999996 7999999985

>PRK09135 pteridine reductase; Provisional

Probab=95.69  E-value=0.14  Score=47.89  Aligned_cols=105  Identities=23%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCC-C-ce-eeecCCCcHHhh-------cC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTP-S-QV-LDFTGPEELASA-------LK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~-~-~v-~~i~~t~d~~~a-------l~  160 (412)
                      ++|.|+||+|++|..++..++..|.  +|+++|...   ......++.+.... . .+ .+++-..+....       +.
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999998  999999753   22222223221100 0 00 011111112222       23


Q ss_pred             CCcEEEEcCCCCCC-C-C-Cc---hhhHHHhhHHHHHHHHHHHHhh
Q 015172          161 GVNVVVIPAGVPRK-P-G-MT---RDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       161 ~aDiVIiaag~p~k-~-g-~~---r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      +.|+||.++|.... + . .+   ..+.+..|+.-...+.+.+.++
T Consensus        85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  130 (249)
T PRK09135         85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ  130 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            68999999985321 1 1 11   2334556766555555555443

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.67  E-value=0.06  Score=55.02  Aligned_cols=71  Identities=15%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH-hCCCC-CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIK-MSPLV-SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~-~~gl~-~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +||+|+||+|.||+.+...|. .+.+- .+++++......+........  ...+..   .++. +.+++.|+|+.++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~~-~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFDI-DALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Cccc-ccccCCCEEEEcCC
Confidence            489999999999999998888 55542 588888775432222222111  112222   2222 36899999999976

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.67  E-value=0.062  Score=55.01  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |+||+|+||+|.+|.-+...++. ..+ ..+++++.....-+....+...  .  ...+. ..+. +.++++|+|+.++|
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~--~--~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK--E--GTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC--c--ceEEe-cCCh-hHhcCCCEEEECCC
Confidence            47999999999999999974554 455 3458887654321121122221  1  11121 1233 35899999999875

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.67  E-value=0.076  Score=49.60  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus        20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            68999998 9999999999999996 7899999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.67  E-value=1.1  Score=44.68  Aligned_cols=33  Identities=33%  Similarity=0.593  Sum_probs=30.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||.|+|+ |.+|..++..|+..|+ ++|+|+|-+.
T Consensus         1 kVlVVGa-GGlG~eilknLal~Gv-g~I~IvD~D~   33 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLALSGF-RNIHVIDMDT   33 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            6899998 9999999999999996 7999999875

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.65  E-value=0.064  Score=55.96  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|+|. |.+|..+|..+...|.  +|+.+|+++.+..... .+ .  ..+      .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~-G--~~v------~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MD-G--FRV------MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hc-C--CEe------cCHHHHHhCCCEEEECCCC
Confidence            3568999998 9999999999999997  8999999873221110 01 1  111      1345678999999998542


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      +               .++..  ..++..-+++++++++-.
T Consensus       278 ~---------------~vI~~--~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        278 K---------------DVITA--EHMEAMKDGAILANIGHF  301 (425)
T ss_pred             H---------------HHHHH--HHHhcCCCCCEEEEcCCC
Confidence            2               22221  122222378899888744

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.094  Score=49.74  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHL   43 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            35788999999999999999999998  999999875

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.14  Score=48.51  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~   40 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQ   40 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999998  899999875

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.64  E-value=0.11  Score=48.41  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~  129 (412)
                      +++|.|+||+|.+|..++..++..|.  ++++. +.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35899999999999999999999997  88888 8875

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.64  E-value=0.05  Score=51.59  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  .|+++|.++
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~   45 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA   45 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence            46899999999999999999999998  999999975

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.18  Score=47.48  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  .|++.|.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~   36 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRT   36 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5789999999999999999999997  899999876

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.62  E-value=0.11  Score=49.44  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC-ce-eeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS-QV-LDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~-------al~~aDi  164 (412)
                      +.+.|+|++|.+|..++..++..|.  +|++.|.........++....... .+ .+++-..+.++       .+...|+
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~   88 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI   88 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5688999999999999999999998  899988765222222222111000 00 01111111221       2346899


Q ss_pred             EEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172          165 VVIPAGVPRK-P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       165 VIiaag~p~k-~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +|.++|.... +  +.+.   .+.+..|+.-    .+.+.+.+.+..+.+.+++++.
T Consensus        89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         89 LVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            9999987531 1  1122   2234555543    3344444444334566666553

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.60  E-value=0.074  Score=52.19  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        31 s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            68999998 9999999999999995 6999999874

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.59  E-value=0.092  Score=49.17  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++.+|.  +|++++.+.
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~   40 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG   40 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36899999999999999999999998  899999875

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.15  Score=48.05  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCc--eeeecCCCcHHhhcC-CCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ--VLDFTGPEELASALK-GVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~--v~~i~~t~d~~~al~-~aDiVIia  168 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+.+..  .....+.........  ..+++...+...++. +.|+||..
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999999997  8999888652  111111111111110  112222223333444 89999999


Q ss_pred             CCCCC
Q 015172          169 AGVPR  173 (412)
Q Consensus       169 ag~p~  173 (412)
                      +|.+.
T Consensus        81 ag~~~   85 (257)
T PRK09291         81 AGIGE   85 (257)
T ss_pred             CCcCC
Confidence            98753

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.59  E-value=0.13  Score=51.30  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+.+.|+||+|.+|..+|..++..|.  +|++.|+++
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~   87 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP   87 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            45788999999999999999999998  899999986

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.58  E-value=0.056  Score=51.35  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.++
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999998  899999875

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.57  E-value=0.044  Score=55.15  Aligned_cols=72  Identities=19%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||+ |.+|...+..+.. .+ +.+|.++|++.  ++..+.++.+. ..  .. +....|++++++++|+||.+.
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~-~~~V~v~~R~~~~a~~l~~~~~~~-~g--~~-v~~~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRP-IREVRVWARDAAKAEAYAADLRAE-LG--IP-VTVARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHhhc-cC--ce-EEEeCCHHHHHccCCEEEEee
Confidence            468999998 9999998877775 45 57999999986  33444444321 11  11 122467888999999999884


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       206 ~  206 (330)
T PRK08291        206 P  206 (330)
T ss_pred             C
Confidence            3

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.56  E-value=0.096  Score=49.07  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+|++|.+|..++..|+..|.  +|++.+.+.
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~   41 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE   41 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999998  999999875

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.093  Score=49.13  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++++.+.
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~   43 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNA   43 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            36899999999999999999999998  899999875

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.55  E-value=0.072  Score=50.48  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~   43 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA   43 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            35799999999999999999999998  999999875

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.12  Score=48.94  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  .|++.|.+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~   35 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTK   35 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5788999999999999999999998  899999875

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.075  Score=50.54  Aligned_cols=35  Identities=31%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~   41 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDA   41 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35789999999999999999999998  899999876

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.55  E-value=0.041  Score=54.17  Aligned_cols=105  Identities=21%  Similarity=0.242  Sum_probs=50.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcc--cCCCCceeeecCC-CcHHhhcCCCcEEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSH--CNTPSQVLDFTGP-EELASALKGVNVVVI  167 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~--~~~~~~v~~i~~t-~d~~~al~~aDiVIi  167 (412)
                      .+.||+.||. |-+-.+........+....++-+|+++ +...+..+..  ......+..+++. .+...++++.|+|++
T Consensus       120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            3569999997 998777664443333323788999997 3333333332  1112223333221 123345899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII  209 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~  209 (412)
                      ++=+            .-+.+-+.++...+.+++ |++.+++=
T Consensus       199 AalV------------g~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  199 AALV------------GMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -TT-------------S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhhc------------ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            9632            223445777888888887 78877543

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.54  E-value=0.15  Score=49.01  Aligned_cols=34  Identities=18%  Similarity=0.042  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+|.+|..++..++.+|.  .|++++.+.
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            4689999999999999999999998  899999875

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.54  E-value=0.077  Score=58.04  Aligned_cols=137  Identities=18%  Similarity=0.164  Sum_probs=79.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH----HhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL----ASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~----~~al~~aDiVIia  168 (412)
                      ..+|.|+|. |.+|+.++..|..+|+  +++++|.|+..  +..+.+...+....+-   +|.    +..+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~v~~GDa---t~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGMKVFYGDA---TRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCCeEEEEeC---CCHHHHHhcCCCcCCEEEEE
Confidence            468999998 9999999999999998  99999998732  1122222211111111   222    1356799999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~  247 (412)
                      ...+           ..|    ..++..+++..|+..+++-+ |+.+      .+.+++.+   -+.++--+.-.+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence            3211           334    34555666678887654433 4333      23334442   3344333443444555


Q ss_pred             HHHHHHcCCCCCCe
Q 015172          248 TFVAQKKNLKLIDV  261 (412)
Q Consensus       248 ~~la~~l~v~~~~V  261 (412)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            55556777765443

>PRK07877 hypothetical protein; Provisional

Probab=95.53  E-value=0.046  Score=60.63  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|+|+ | +|+.+|..|+..|++++|+|+|-|.
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            468999998 9 9999999999999878999999985

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.11  Score=48.84  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=59.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCc-------HHhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEE-------LASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d-------~~~al~~aDi  164 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.|.+..  .....++.. .......+++...+       ..+.+.+.|+
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          7 KTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELGE-SALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhCC-ceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5899999999999999999999998  8999998752  111111110 00000001110011       1122357899


Q ss_pred             EEEcCCCCCCCC---Cchh---hHHHhhHHHHHHHHHHHHhh
Q 015172          165 VVIPAGVPRKPG---MTRD---DLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       165 VIiaag~p~k~g---~~r~---dl~~~N~~i~~~i~~~i~~~  200 (412)
                      ||..+|......   .+..   ..+..|+.-...+.+.+.++
T Consensus        84 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  125 (249)
T PRK06500         84 VFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL  125 (249)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999998643211   1222   23456666555666666543

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.099  Score=49.15  Aligned_cols=35  Identities=26%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++++.+.
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            35899999999999999999999997  899999875

>PRK12742 oxidoreductase; Provisional

Probab=95.52  E-value=0.12  Score=48.18  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+..
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            36899999999999999999999998  88887653

>PRK09186 flagellin modification protein A; Provisional

Probab=95.51  E-value=0.13  Score=48.66  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            36899999999999999999999998  899998875

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.51  E-value=0.075  Score=54.17  Aligned_cols=34  Identities=35%  Similarity=0.565  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus        29 ~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            68999998 9999999999999996 7999999985

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.12  Score=48.82  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD  126 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D  126 (412)
                      ++|.|+||+|.+|..++..++.+|.  +|++.+
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~   37 (254)
T PRK12746          7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHY   37 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence            6899999999999999999999997  777754

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.072  Score=51.15  Aligned_cols=34  Identities=26%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  .|++.+.+.
T Consensus         6 ~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~   39 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAALGA--RVAIGDLDE   39 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5799999999999999999999998  899999876

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.51  E-value=0.042  Score=54.72  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+|+|||+ |.+|...+..+.. .++ .+|+++|++.  +...+.++...  ...+.    ..+.++++.++|+||.+.
T Consensus       125 ~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT  196 (304)
T PRK07340        125 PGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEcc
Confidence            468999998 9999999988865 564 6899999987  33444444322  11111    256777899999999985


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       197 ~  197 (304)
T PRK07340        197 T  197 (304)
T ss_pred             C
Confidence            4

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.51  E-value=0.065  Score=55.70  Aligned_cols=116  Identities=21%  Similarity=0.255  Sum_probs=68.9

Q ss_pred             HhhhhhhhhhhccCCCCC---CCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCce
Q 015172           70 RSTFARKAQSSEQRPQYA---LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV  146 (412)
Q Consensus        70 ~~~f~~~~~~~~~~~~~~---~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v  146 (412)
                      |++....+..+++.-...   ..--..++|+|||. |.+|..+|..+...|.  +|.-||.....    +.     . ..
T Consensus       125 R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~-G~IG~~vA~~~~~fGm--~V~~~d~~~~~----~~-----~-~~  191 (409)
T PRK11790        125 RGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGY-GHIGTQLSVLAESLGM--RVYFYDIEDKL----PL-----G-NA  191 (409)
T ss_pred             cChHHHHHHHHcCcccccccCcccCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCccc----cc-----C-Cc
Confidence            776655554443321111   11124579999998 9999999999888888  99999974210    00     0 01


Q ss_pred             eeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172          147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN  214 (412)
Q Consensus       147 ~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~  214 (412)
                      .   ...++++.++.||+|++..  |..+         ++-.++.  .+.+...-|++++|+++  .-+|
T Consensus       192 ~---~~~~l~ell~~sDiVslh~--Plt~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~~vd  245 (409)
T PRK11790        192 R---QVGSLEELLAQSDVVSLHV--PETP---------STKNMIG--AEELALMKPGAILINASRGTVVD  245 (409)
T ss_pred             e---ecCCHHHHHhhCCEEEEcC--CCCh---------HHhhccC--HHHHhcCCCCeEEEECCCCcccC
Confidence            1   1246788999999999984  3211         1222221  11222223789998886  4455

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.51  E-value=0.061  Score=55.14  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|+|+|-+.
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            358999998 9999999999999995 6999999984

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.12  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .++|.|+||+|++|..++..++.+|.  +|+++|..
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~   39 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIH   39 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCc
Confidence            46899999999999999999999998  89998864

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.50  E-value=0.057  Score=48.94  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=49.6

Q ss_pred             cCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc
Q 015172           60 FLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH  139 (412)
Q Consensus        60 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~  139 (412)
                      ++-+.++++...++..          ++. +-..+||.|||.+..+|..++.+|..++.  .|.+.+..           
T Consensus        14 ~~~PcTp~aii~lL~~----------~~~-~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------   69 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEY----------YGI-DLEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------   69 (160)
T ss_dssp             SS--HHHHHHHHHHHH----------TT--STTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------
T ss_pred             CCcCCCHHHHHHHHHh----------cCC-CCCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------
Confidence            4445566666555422          111 23457999999988899999999999886  66666542           


Q ss_pred             cCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172          140 CNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus       140 ~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                                  |.++++.++.||+||.++|.|
T Consensus        70 ------------T~~l~~~~~~ADIVVsa~G~~   90 (160)
T PF02882_consen   70 ------------TKNLQEITRRADIVVSAVGKP   90 (160)
T ss_dssp             ------------SSSHHHHHTTSSEEEE-SSST
T ss_pred             ------------CCcccceeeeccEEeeeeccc
Confidence                        245566789999999999876

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.50  E-value=0.09  Score=52.06  Aligned_cols=35  Identities=17%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~   40 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL   40 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45799999999999999999999997  899999875

>PLN02858 fructose-bisphosphate aldolase

Probab=95.49  E-value=0.053  Score=64.31  Aligned_cols=69  Identities=22%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.+++|++||. |.||..+|..|+..|+  +|+.||++....  .++.....    .   ...+..+.+++||+||++..
T Consensus       322 ~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~Ga----~---~~~s~~e~~~~aDvVi~~V~  389 (1378)
T PLN02858        322 KPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVYKPTL--VRFENAGG----L---AGNSPAEVAKDVDVLVIMVA  389 (1378)
T ss_pred             cCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHcCC----e---ecCCHHHHHhcCCEEEEecC
Confidence            34589999998 9999999999999998  999999976221  12222211    0   12456678899999999865


Q ss_pred             C
Q 015172          171 V  171 (412)
Q Consensus       171 ~  171 (412)
                      .
T Consensus       390 ~  390 (1378)
T PLN02858        390 N  390 (1378)
T ss_pred             C
Confidence            3

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.49  E-value=0.098  Score=49.81  Aligned_cols=115  Identities=16%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC--CceeeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP--SQVLDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~--~~v~~i~~t~d~~~-------al~~aDi  164 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.+.+........+......  ....+++...+.++       .+...|+
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5788999999999999999999998  99999876422211122111100  00011211112222       2346899


Q ss_pred             EEEcCCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKP---GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.|++++
T Consensus        87 lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~is  142 (251)
T PRK12481         87 LINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIA  142 (251)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeC
Confidence            99999875321   11222   23445543    3444455554433335555554

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.076  Score=51.09  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |++|.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35789999999999999999999998  999999875

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.093  Score=50.38  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  .|++.|.+.
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~   43 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ   43 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999998  899999875

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.47  E-value=0.11  Score=48.63  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|..++..|+..|+ +.++++|-+.
T Consensus        22 s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            58999998 9999999999999996 7999999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.46  E-value=0.21  Score=47.08  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=33.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+.++|.|+|++|.+|..++..|+..|.  +|+++|.+.
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~   46 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTE   46 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCH
Confidence            3457899999999999999999999997  999999986

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.44  E-value=0.089  Score=54.58  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|+|. |.+|..+|..+...|.  +|+.+|+++.+.... ..+ .  ..+      .+.+++++++|+||.+.|.
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G--~~v------~~leeal~~aDVVItaTG~  260 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-G--FRV------MTMEEAAKIGDIFITATGN  260 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-C--CEe------CCHHHHHhcCCEEEECCCC
Confidence            4579999998 9999999999998887  899999987321110 111 1  111      1234678999999998542


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      +               .++..  +.+...-+++++++++-.
T Consensus       261 ~---------------~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       261 K---------------DVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             H---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence            2               22221  122222378899888653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.44  E-value=0.049  Score=51.05  Aligned_cols=28  Identities=18%  Similarity=0.393  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH  123 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~  123 (412)
                      |||+|||++|.||..++..+...|+  +|+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence            6999999999999999999988897  653

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.43  E-value=0.055  Score=54.10  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+|+|||+ |.+|..++..+.. .+ +.+|+++|++.  ....+.++.+...  .+.   ...+.++++++||+||.+.
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g~--~~~---~~~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQGF--DAE---VVTDLEAAVRQADIISCAT  197 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcCC--ceE---EeCCHHHHHhcCCEEEEee
Confidence            468999998 9999999875554 55 46999999986  3444444433211  122   1356677899999997764


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       198 ~  198 (314)
T PRK06141        198 L  198 (314)
T ss_pred             C
Confidence            3

>PRK06153 hypothetical protein; Provisional

Probab=95.43  E-value=0.072  Score=54.74  Aligned_cols=35  Identities=29%  Similarity=0.626  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|||+ |.+|+.++..|+..|+ .+++|+|-|.
T Consensus       176 ~~~VaIVG~-GG~GS~Va~~LAR~GV-geI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGL-GGTGSYILDLVAKTPV-REIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcC-CccHHHHHHHHHHcCC-CEEEEECCCE
Confidence            358999998 9999999999999996 7999999985

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.43  E-value=0.059  Score=56.80  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|+|. |.||..+|..+...|.  +|..+|+++... .+..  + .  .  .    ..++++.++.+|+||.+.
T Consensus       252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~--~----~~~leell~~ADIVI~at  317 (476)
T PTZ00075        252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--Y--Q----VVTLEDVVETADIFVTAT  317 (476)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--c--e----eccHHHHHhcCCEEEECC
Confidence            34578999998 9999999999998897  899999886322 1111  1 1  1  1    124567899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      |.+               .++.  .+.++..-|++++++++-.
T Consensus       318 Gt~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        318 GNK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             Ccc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            532               1111  1233333489999998755

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.31  Score=46.81  Aligned_cols=34  Identities=35%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..++..|.  .|++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4789999999999999999999997  899999875

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.42  E-value=0.081  Score=53.27  Aligned_cols=73  Identities=26%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhh-hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVA-ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~-~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ++||+|+||.|.||+-+...|..+ ..+.++.++=...-.|.. .++.....  .+...  ..|.. .++++|+|+.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~~~-~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AADEF-VFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--ccccc-ccccCCEEEEeCc
Confidence            479999999999999999999985 445667777654422221 22222211  11110  12333 5789999999986

>PRK08324 short chain dehydrogenase; Validated

Probab=95.40  E-value=0.12  Score=57.02  Aligned_cols=36  Identities=33%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..++|.|+||+|.+|..++..++..|.  +|++.|++.
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~  456 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE  456 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            346899999999999999999999997  899999986

>PRK08589 short chain dehydrogenase; Validated

Probab=95.40  E-value=0.11  Score=50.04  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=48.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCC--CceeeecCCCcHH-------hhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTP--SQVLDFTGPEELA-------SALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~--~~v~~i~~t~d~~-------~al~~a  162 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.|.++ ......++.+....  ...-+++...+.+       +.+...
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            35789999999999999999999998  999999874 22223333221111  0001121111111       123468


Q ss_pred             cEEEEcCCCC
Q 015172          163 NVVVIPAGVP  172 (412)
Q Consensus       163 DiVIiaag~p  172 (412)
                      |++|..+|..
T Consensus        84 d~li~~Ag~~   93 (272)
T PRK08589         84 DVLFNNAGVD   93 (272)
T ss_pred             CEEEECCCCC
Confidence            9999999875

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.39  E-value=0.064  Score=55.70  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=45.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc-cCCCCceeeecCCCcHHhh-cCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFTGPEELASA-LKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~~t~d~~~a-l~~aDiVIiaa  169 (412)
                      |||.|+|+ |.+|..++..|...|.  +++++|.++....  .+.+ ........+.+-...++++ ++++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~--~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLR--RLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999998 9999999999999998  9999999763211  1111 1111000111111223333 78999999984

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.39  E-value=0.2  Score=47.58  Aligned_cols=117  Identities=19%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCC-ce-eeecCCCcHH-------hhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPS-QV-LDFTGPEELA-------SALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~-~v-~~i~~t~d~~-------~al~~  161 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.+..  .....++....... .+ -+++...+.+       +.+..
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            36899999999999999999999998  8999998752  11111222111110 00 1111111121       11246


Q ss_pred             CcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHhh----CCCeEEEEEcC
Q 015172          162 VNVVVIPAGVPRKPG---MT---RDDLFNINANIVKTLVEAVADN----CPDAFIHIISN  211 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~~~i~~~i~~~----~p~aiviv~TN  211 (412)
                      .|+||.++|......   .+   -.+.+..|+.-...+.+.+.++    .+.+.++++|.
T Consensus        90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            899999998642111   11   1223456666666666655544    23445555553

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.15  Score=48.33  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCe-EEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSA-LHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-v~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  + |+++|.+.
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~   41 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNA   41 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCH
Confidence            36799999999999999999999987  6 99999875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.38  E-value=0.086  Score=54.04  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d~  169 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHDV  169 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            358999998 9999999999999995 7999999983

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=95.37  E-value=0.17  Score=48.74  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecCC-------CcHHhhcCCCcE
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTGP-------EELASALKGVNV  164 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~t-------~d~~~al~~aDi  164 (412)
                      -|.|.||++.+|..+|..++..|.  .|+|..++.  +...+.++.+.. .+. .-+++-.       ....+.+.+.|+
T Consensus         8 v~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~-~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           8 VALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALAL-ALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             EEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEE-eeccCCHHHHHHHHHHHHHhhCcccE
Confidence            467779999999999999999999  999999986  455555555311 111 1111111       123345788999


Q ss_pred             EEEcCCCCCCCCC------chhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          165 VVIPAGVPRKPGM------TRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g~------~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      +|..||..+....      +-.+++..|+.-+-.....+-...   ..+.||+.+
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~  139 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLG  139 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEec
Confidence            9999997653211      234467778765555555544332   245666654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.36  E-value=0.093  Score=50.34  Aligned_cols=34  Identities=35%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ .+++|+|-+.
T Consensus        12 ~~VlVvG~-GGvGs~va~~Lar~GV-g~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGL-GGVGSWAAEALARSGV-GKLTLIDFDV   45 (231)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            58999998 9999999999999995 7999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06398 aldose dehydrogenase; Validated

Probab=95.35  E-value=0.083  Score=50.55  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|.++
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~   40 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE   40 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            36799999999999999999999998  999999875

>PRK08328 hypothetical protein; Provisional

Probab=95.34  E-value=0.093  Score=50.19  Aligned_cols=34  Identities=35%  Similarity=0.613  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus        28 ~~VlIiG~-GGlGs~ia~~La~~Gv-g~i~lvD~D~   61 (231)
T PRK08328         28 AKVAVVGV-GGLGSPVAYYLAAAGV-GRILLIDEQT   61 (231)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            58999998 9999999999999996 7999999875

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.34  E-value=0.051  Score=53.79  Aligned_cols=69  Identities=14%  Similarity=0.294  Sum_probs=52.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+.||- |.||.+++..|...|+  .|+.||++.  ..+.++.+....  +.     ..+.|..++||+||...+.
T Consensus        34 s~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga~--v~-----~sPaeVae~sDvvitmv~~  101 (327)
T KOG0409|consen   34 SKTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGAR--VA-----NSPAEVAEDSDVVITMVPN  101 (327)
T ss_pred             ccceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhchh--hh-----CCHHHHHhhcCEEEEEcCC
Confidence            3579999998 9999999999999999  999999864  234455555422  22     2356678999999998654


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       102 ~  102 (327)
T KOG0409|consen  102 P  102 (327)
T ss_pred             h
Confidence            4

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.34  E-value=0.084  Score=54.52  Aligned_cols=34  Identities=29%  Similarity=0.546  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ +.++|+|-+.
T Consensus        43 ~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~   76 (392)
T PRK07878         43 ARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV   76 (392)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            58999998 9999999999999996 6999999875

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.33  E-value=0.15  Score=48.01  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+.+|.  +|++.|.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999998  999999976

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR02415 23BDH acetoin reductases

Probab=95.32  E-value=0.083  Score=49.83  Aligned_cols=114  Identities=22%  Similarity=0.342  Sum_probs=62.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCCCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~aD  163 (412)
                      ++.|+|++|.+|..++..|+..|.  +|++++.+.  ......++.+.....  ...+++...+..+       .+...|
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            588999999999999999999998  899999875  222222232211100  0011111111111       234679


Q ss_pred             EEEEcCCCCC-CC--CCchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPR-KP--GMTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~-k~--g~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||.++|... .+  +.+..+   .+..|..    +.+.+.+.+.+....+.++++|
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            9999998642 11  223322   2334432    3445555555544445555443

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.32  E-value=0.066  Score=53.77  Aligned_cols=72  Identities=10%  Similarity=0.195  Sum_probs=48.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+|+|||+ |.+|...+..++. .+ +.+|.++|++..  ...+.++.+. ....+..   ..|++++++++|+||.+-
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~-~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~---~~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRD-IERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV---VNSADEAIEEADIIVTVT  200 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCC-ccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEcc
Confidence            468999998 9999887766554 45 479999999863  3333334321 1211222   357788899999999984


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       201 ~  201 (325)
T PRK08618        201 N  201 (325)
T ss_pred             C
Confidence            3

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.32  E-value=0.14  Score=46.57  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=41.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .++|+|||- |..|...|.+|.+.|+  +|++-..........--.+ .    +.    ..+++|+.+.||+|++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~-G----f~----v~~~~eAv~~aDvV~~L   67 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKAD-G----FE----VMSVAEAVKKADVVMLL   67 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHT-T-----E----CCEHHHHHHC-SEEEE-
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHC-C----Ce----eccHHHHHhhCCEEEEe
Confidence            479999998 9999999999999999  8887776542111111111 1    11    13567899999999998

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.32  E-value=0.043  Score=55.68  Aligned_cols=74  Identities=23%  Similarity=0.337  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE-EEecCchhhhh-hh-hcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH-LYDVMNVKGVA-AD-LSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~-L~Di~~~~g~~-~d-L~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +||+|+||+|.+|..++..|...+.+ +++ +++.+...+.. .+ ..+......+ .+. ..|.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDL-NLE-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCc-eee-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999998877543 666 66765422211 11 1111110011 121 1244444469999999854

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.31  E-value=0.14  Score=47.89  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++.+|.  .|++.+.+.
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~   40 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV   40 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            36899999999999999999999997  888888764

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.30  E-value=0.05  Score=55.95  Aligned_cols=61  Identities=15%  Similarity=0.232  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||+.+|..+...|.  +|..+|.....  .    +  ..  . .   ..++++.++.||+|++..
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~----~--~~--~-~---~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R----G--DE--G-D---FRSLDELVQEADILTFHT  175 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c----c--cc--c-c---cCCHHHHHhhCCEEEEeC
Confidence            3579999998 9999999999998898  99999963211  0    0  00  0 1   135778889999999874

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.30  E-value=0.12  Score=48.21  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.+.++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999998  999999876

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.29  E-value=0.088  Score=54.83  Aligned_cols=102  Identities=20%  Similarity=0.334  Sum_probs=63.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|+|+ |.||..++..+...|. .+|+++|.+..+  ..+.++.     .....   ..++.+.+.++|+||.+.
T Consensus       181 ~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT  250 (423)
T PRK00045        181 SGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST  250 (423)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence            3479999998 9999999998888774 589999997622  2222221     11111   135556789999999997


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      |.|..         ..+.+.++....  .+.....+++=.++|-|
T Consensus       251 ~s~~~---------~i~~~~l~~~~~--~~~~~~~vviDla~Prd  284 (423)
T PRK00045        251 GAPHP---------IIGKGMVERALK--ARRHRPLLLVDLAVPRD  284 (423)
T ss_pred             CCCCc---------EEcHHHHHHHHh--hccCCCeEEEEeCCCCC
Confidence            76531         111222222111  11124578888899988

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.087  Score=49.10  Aligned_cols=35  Identities=14%  Similarity=0.066  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            35799999999999999999999998  999999876

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.27  E-value=0.065  Score=57.15  Aligned_cols=104  Identities=20%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccC--CC-Cc--------eeeecCCCcH---
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCN--TP-SQ--------VLDFTGPEEL---  155 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~--~~-~~--------v~~i~~t~d~---  155 (412)
                      .+..||.|+|+ |.+|...+..+...|-  +|+.+|+++ ....+..+-...  .. ..        ....  +.++   
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~~~~~~  237 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SEEFIKA  237 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--chhHHHH
Confidence            44689999998 9999999988888896  899999987 233333321110  00 00        0001  1221   


Q ss_pred             -----HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHhhCCCeEEEEEcCC
Q 015172          156 -----ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI-VKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       156 -----~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i-~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                           .+.++++|+||.++|.|.++-.          .+ .++..+.++   |.++|+.++.+
T Consensus       238 ~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~mk---pGgvIVdvg~~  287 (509)
T PRK09424        238 EMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASMK---PGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhcC---CCCEEEEEccC
Confidence                 2234789999999998743211          12 244444433   88877777654

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.14  Score=51.55  Aligned_cols=78  Identities=23%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~~  161 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.++  +.....++.......  ...+++...+.++.       +..
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            35799999999999999999999998  899999876  222222332211110  01122211222211       256


Q ss_pred             CcEEEEcCCCC
Q 015172          162 VNVVVIPAGVP  172 (412)
Q Consensus       162 aDiVIiaag~p  172 (412)
                      .|++|..+|..
T Consensus        85 iD~lVnnAG~~   95 (330)
T PRK06139         85 IDVWVNNVGVG   95 (330)
T ss_pred             CCEEEECCCcC
Confidence            89999999874

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.15  Score=48.40  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  .+++.+.++
T Consensus         8 ~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~   41 (258)
T PRK08628          8 KVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA   41 (258)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence            5799999999999999999999998  899998876

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.15  Score=49.89  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC-ce-eeecCCCcHHhh-------cC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS-QV-LDFTGPEELASA-------LK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~a-------l~  160 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++++.+.   .......+....... .+ .+++...+.++.       +.
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999998  999999874   111222222111000 00 111111122222       24


Q ss_pred             CCcEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          161 GVNVVVIPAGVPRK--P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       161 ~aDiVIiaag~p~k--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      ..|+||..+|....  +  ..+.   ...+..|+.-...+.+.+.++. +.+.+|++|.
T Consensus       124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence            67999999986321  1  1122   2345667666666666665543 4455555553

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.19  Score=50.47  Aligned_cols=78  Identities=21%  Similarity=0.239  Sum_probs=48.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.+.++  ......++.......  ...+++-..+.++       .+..
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            35799999999999999999999998  899999876  222223332211110  0012211112221       2347


Q ss_pred             CcEEEEcCCCC
Q 015172          162 VNVVVIPAGVP  172 (412)
Q Consensus       162 aDiVIiaag~p  172 (412)
                      .|++|..+|..
T Consensus        86 iD~lInnAg~~   96 (334)
T PRK07109         86 IDTWVNNAMVT   96 (334)
T ss_pred             CCEEEECCCcC
Confidence            89999999864

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.23  E-value=0.047  Score=55.05  Aligned_cols=73  Identities=26%  Similarity=0.307  Sum_probs=46.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC--ceeeecCCCcHHh-hcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS--QVLDFTGPEELAS-ALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-al~~aDiVIia  168 (412)
                      ++||+|+||+|+.|..+...|+.++-+ |+.++.-.+..+....-.|.....  .+. +. +-|.++ ..++||+||.+
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~-~~-~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLP-FQ-TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccc-cc-cCChhhhhcccCCEEEEe
Confidence            689999999999999999999998744 688887765333322222221111  111 11 112222 25679999998

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.22  E-value=0.046  Score=54.04  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+|.||.++|..|...|.  .|.++...                       |.++++.+++||+||.+.|.
T Consensus       157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~  211 (284)
T PRK14179        157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGR  211 (284)
T ss_pred             CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCc
Confidence            357999999999999999999999997  88776211                       12466678999999999987


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus       212 ~~  213 (284)
T PRK14179        212 GH  213 (284)
T ss_pred             cc
Confidence            73

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.097  Score=54.46  Aligned_cols=124  Identities=23%  Similarity=0.237  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|.|+|+ |.+|..+|..|+..|.  +|+++|.+...   ....+|....    +..+.+.. ..+.+.++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~-~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG----IELVLGEY-PEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCc-chhHhhcCCEEEECC
Confidence            368999998 8899999999999998  99999997521   1122232111    22222211 123467899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC--CCcHHHHHHHHHHh
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV--NSTVPIAAEVLKQK  227 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv--~~~~pI~t~i~~~~  227 (412)
                      |.+...-+ ....-..++++++......+.. + ..+|-+|-+.  +++.-++..++...
T Consensus        77 g~~~~~~~-~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         77 GVPLDSPP-VVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CCCCCCHH-HHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            87532111 1111134555555444433322 2 2333444333  34445667777664

>PRK07411 hypothetical protein; Validated

Probab=95.22  E-value=0.099  Score=53.96  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        38 ~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~   72 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV   72 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            358999998 9999999999999996 7999999985

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.22  E-value=0.14  Score=48.54  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~   41 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSA   41 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            36799999999999999999999997  888876543

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.095  Score=51.39  Aligned_cols=35  Identities=37%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  .|++.|.+.
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE   43 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999998  899999876

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.14  Score=48.89  Aligned_cols=35  Identities=34%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++.+|.  +|++.|.+.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~   39 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA   39 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35799999999999999999999998  899999876

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.17  E-value=0.17  Score=48.01  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  ++++.|.+.
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~   45 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINA   45 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            46899999999999999999999998  899999875

>PRK09242 tropinone reductase; Provisional

Probab=95.17  E-value=0.38  Score=45.56  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~   43 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDA   43 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            36799999999999999999999998  999999875

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.16  E-value=0.1  Score=48.48  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+||+|.+|..++..++.+|.  +|++.....
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            46899999999999999999999998  777655543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.15  E-value=0.16  Score=49.55  Aligned_cols=89  Identities=19%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |+||+|||+ |.||..++..+...+.. ++ .+++.+.......+....    ...   .++|+++.-.+.|+||++++.
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~----~~~---~~~d~~~l~~~~DvVve~t~~   71 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE----AVR---VVSSVDALPQRPDLVVECAGH   71 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc----CCe---eeCCHHHhccCCCEEEECCCH
Confidence            579999998 99999999888776432 33 333433221111111111    111   235676432569999999642


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                                      ....+++..+-+...+.++
T Consensus        72 ----------------~~~~e~~~~aL~aGk~Vvi   90 (265)
T PRK13303         72 ----------------AALKEHVVPILKAGIDCAV   90 (265)
T ss_pred             ----------------HHHHHHHHHHHHcCCCEEE
Confidence                            2335666666665555443

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.15  E-value=0.11  Score=51.39  Aligned_cols=72  Identities=26%  Similarity=0.329  Sum_probs=49.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-------------------hh--hhhhhcccCCCCceeeecCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-------------------KG--VAADLSHCNTPSQVLDFTGP  152 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-------------------~g--~~~dL~~~~~~~~v~~i~~t  152 (412)
                      .||.|+|+ |.+|..+|..|+..|+ ..|.|+|-+..                   ++  .+..|.+......+..+...
T Consensus        20 s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~   97 (286)
T cd01491          20 SNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP   97 (286)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            58999998 9999999999999996 79999998751                   00  01122222222334444433


Q ss_pred             CcHHhhcCCCcEEEEc
Q 015172          153 EELASALKGVNVVVIP  168 (412)
Q Consensus       153 ~d~~~al~~aDiVIia  168 (412)
                      .+. +-+.+.|+||.+
T Consensus        98 ~~~-~~l~~fdvVV~~  112 (286)
T cd01491          98 LTT-DELLKFQVVVLT  112 (286)
T ss_pred             CCH-HHHhcCCEEEEe
Confidence            333 468999999988

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.2  Score=48.30  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA   40 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence            35799999999999999999999998  999999864

>PLN02306 hydroxypyruvate reductase

Probab=95.12  E-value=0.072  Score=54.93  Aligned_cols=74  Identities=20%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchhhhh---hhhccc---CCCCceeeecCCCcHHhhcCCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVKGVA---ADLSHC---NTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~g~~---~dL~~~---~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      ..++|+|||. |.+|..+|..+. ..|.  +|..||........   ..+...   ...... .+....++++.++.||+
T Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~L~ell~~sDi  239 (386)
T PLN02306        164 KGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPV-TWKRASSMEEVLREADV  239 (386)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccc-cccccCCHHHHHhhCCE
Confidence            4579999998 999999998875 5577  99999986411110   011000   000001 11113478889999999


Q ss_pred             EEEcC
Q 015172          165 VVIPA  169 (412)
Q Consensus       165 VIiaa  169 (412)
                      |++..
T Consensus       240 V~lh~  244 (386)
T PLN02306        240 ISLHP  244 (386)
T ss_pred             EEEeC
Confidence            99974

>PRK05855 short chain dehydrogenase; Validated

Probab=95.12  E-value=0.11  Score=55.07  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHH-------hhcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELA-------SALK  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~-------~al~  160 (412)
                      ..+++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........  ..+++...+.+       +.+.
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            346899999999999999999999998  899999986  2222222322111000  00111111111       1234


Q ss_pred             CCcEEEEcCCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||.....   ..+..   ..+..|+    .+.+.+.+.+.+....+.|+++|
T Consensus       392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~s  451 (582)
T PRK05855        392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVA  451 (582)
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            589999999975421   11222   2233453    34445555555544445555554

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.10  E-value=0.048  Score=55.89  Aligned_cols=75  Identities=15%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee-eecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-DFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~-~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +..||.|||+ |.+|...+..+...|.  +|..+|.+..+..  .+.... ...+. .+....++.+.++++|+||.+++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            3567999998 9999999999998897  8999999752211  111110 00011 11112346677899999999976


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .|
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            54

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.10  E-value=0.22  Score=49.26  Aligned_cols=118  Identities=24%  Similarity=0.336  Sum_probs=74.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHH-------hhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELA-------SAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~-------~al  159 (412)
                      .+.|.|.|||..+|..+|+.++..|.  .++|.....  ++..+.++........+.    +++-.++.+       ..+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            35688889999999999999999998  888887764  233334444332111011    122122222       347


Q ss_pred             CCCcEEEEcCCCCCCCC-Cc------hhhHHHh----hHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          160 KGVNVVVIPAGVPRKPG-MT------RDDLFNI----NANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g-~~------r~dl~~~----N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .+.|+.|..||..+ .+ .+      ..+.+..    .+-+.+...+.+.+.. ++.|++++....
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG  153 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG  153 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence            89999999999987 33 11      1122333    3567788888888776 687777665544

>TIGR01746 Thioester-redct thioester reductase domain

Probab=95.10  E-value=0.12  Score=50.95  Aligned_cols=111  Identities=13%  Similarity=0.066  Sum_probs=65.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-----hhhhh-----cccCCC-CceeeecCC----------C
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-----VAADL-----SHCNTP-SQVLDFTGP----------E  153 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-----~~~dL-----~~~~~~-~~v~~i~~t----------~  153 (412)
                      +|.|+||+|++|..++..|+..|....|++.+.+....     ....+     .+.... ..+..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            57899999999999999999988433788888764211     00001     000000 112212111          1


Q ss_pred             cHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       154 d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ++.+...++|+||.+++... ......++...|+.-...+.+.+.+.....++
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v  132 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKPLH  132 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEE
Confidence            34445688999999987542 12233444567777778888877765544333

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.09  E-value=0.072  Score=52.48  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|.|||| |.+|..+++.|+..|. .+|.+++++..  +..+.++...   ..+..+....+..+.+.++|+||.+..
T Consensus       125 ~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       125 GFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             CceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECCC
Confidence            468999998 9999999999999985 58999998763  3233332211   111111111233345789999999854


Q ss_pred             C
Q 015172          171 V  171 (412)
Q Consensus       171 ~  171 (412)
                      .
T Consensus       200 ~  200 (282)
T TIGR01809       200 A  200 (282)
T ss_pred             C
Confidence            4

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.14  Score=48.65  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+.
T Consensus         7 ~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~   40 (263)
T PRK08226          7 KTALITGALQGIGEGIARVFARHGA--NLILLDISP   40 (263)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            6799999999999999999999998  899999875

>PLN02858 fructose-bisphosphate aldolase

Probab=95.09  E-value=0.072  Score=63.22  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=48.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..||++||- |.||.++|..|+..|+  +|..||++..+.  .++.+...    .   ...++.++.++||+||.+.
T Consensus         4 ~~~IGfIGL-G~MG~~mA~~L~~~G~--~v~v~dr~~~~~--~~l~~~Ga----~---~~~s~~e~a~~advVi~~l   68 (1378)
T PLN02858          4 AGVVGFVGL-DSLSFELASSLLRSGF--KVQAFEISTPLM--EKFCELGG----H---RCDSPAEAAKDAAALVVVL   68 (1378)
T ss_pred             CCeEEEEch-hHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHcCC----e---ecCCHHHHHhcCCEEEEEc
Confidence            468999998 9999999999999998  999999976322  22333221    1   1245677889999999984

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.09  E-value=0.061  Score=53.23  Aligned_cols=56  Identities=25%  Similarity=0.425  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||+++.||..+|..|...+.  .|..++..                       |.++++.+++||+||.++|.
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg~  211 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVGK  211 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCCC
Confidence            347999999944499999999998886  77777632                       23566679999999999987


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       212 p  212 (286)
T PRK14175        212 P  212 (286)
T ss_pred             C
Confidence            7

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.08  E-value=0.15  Score=53.66  Aligned_cols=125  Identities=17%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||.|||+ |.+|..+|..|...|.  +|+++|..+.   ......|....    +..+.+.. .. ...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~~-~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-PT-LPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-cc-ccCCCCEEEECC
Confidence            468999998 9999999999999998  8999997641   11112232222    22222221 11 356799999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHH--HHHHhhCCCeEEEEEcCCC--CCcHHHHHHHHHHh
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLV--EAVADNCPDAFIHIISNPV--NSTVPIAAEVLKQK  227 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~--~~i~~~~p~aiviv~TNPv--~~~~pI~t~i~~~~  227 (412)
                      |++..... ....-..+++++.++-  ..+.+...+..+|-+|-+.  ++++-+++.+++..
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            88642211 0011123444443321  1221111133344454444  34455667777665

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.06  E-value=0.064  Score=53.67  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=45.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+++|||+ |..+...+..++. .+ +.+|++||++.  ....+.++.+ . ...+.   ...|.++++++||+||.+.
T Consensus       128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~---~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVV---AVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEE---EESSHHHHHTTSSEEEE--
T ss_pred             CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccce---eccchhhhcccCCEEEEcc
Confidence            468999998 9998888776654 56 68999999987  4555666666 2 22222   2367888999999999863

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.06  E-value=0.11  Score=52.33  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=47.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -+.++|+|||- |.||..+|..|...|+  +|+.+|... .  ..+..... .  ...    .+++++++.||+|++..
T Consensus        14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~-~--s~~~A~~~-G--~~v----~sl~Eaak~ADVV~llL   79 (335)
T PRK13403         14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG-K--SFEVAKAD-G--FEV----MSVSEAVRTAQVVQMLL   79 (335)
T ss_pred             hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc-h--hhHHHHHc-C--CEE----CCHHHHHhcCCEEEEeC
Confidence            34578999998 9999999999999999  999998542 1  11111110 1  111    25678999999999984

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.04  E-value=0.29  Score=47.70  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=42.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++||+|.||+|.||+.+...+.+.+-..=+.-+|...-.-.-.|..+......+. +..+.|+.....++|++|=.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~g-v~v~~~~~~~~~~~DV~IDF   76 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLG-VPVTDDLLLVKADADVLIDF   76 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccC-ceeecchhhcccCCCEEEEC
Confidence            6899999999999999998888776322334455543110111111111001111 11133444567899998874

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.43  Score=45.43  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+|.+|..++..++..|.  .|++.|++.
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~   42 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDE   42 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            5788999999999999999999998  899999976

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.03  E-value=0.065  Score=53.94  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.+|..+|..+. .-|.  +|+.+|.........++     .  .. +   .++++.++.||+|++..
T Consensus       144 ~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-----~--~~-~---~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        144 HHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-----N--AR-Y---CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-----C--cE-e---cCHHHHHHhCCEEEEeC
Confidence            4579999998 999999998876 5576  88888875311111000     0  11 1   35778899999999984

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.02  E-value=0.038  Score=56.85  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||. |.||..+|..+...|.  +|+.+|.....  .    .   .. . .   ..++++.+++||+|++..
T Consensus       116 gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~--~----~---~~-~-~---~~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        116 ERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE--A----E---GD-G-D---FVSLERILEECDVISLHT  175 (381)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc--c----c---cC-c-c---ccCHHHHHhhCCEEEEeC
Confidence            478999998 9999999999998898  99999974311  0    0   00 1 1   135777889999999984

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.02  E-value=0.15  Score=48.52  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..++..|.  .|++.+.+.
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            36899999999999999999999998  899998874

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.01  E-value=0.079  Score=53.28  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+++|||+ |.+|...+..++. .+ +.+|.+++.+.  +...+.++.+. ....+   ....++++++++||+||.+.
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~-i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v---~~~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRD-IRSARIWARDSAKAEALALQLSSL-LGIDV---TAATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCC-ccEEEEECCCHHHHHHHHHHHHhh-cCceE---EEeCCHHHHhccCCEEEEec
Confidence            468999998 9999999887764 55 46899999986  34444444321 11112   12367788899999999984


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       203 ~  203 (326)
T TIGR02992       203 P  203 (326)
T ss_pred             C
Confidence            3

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.14  Score=48.72  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      ..+++.|+||+|++|..++..++..|.  .|++.+..
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~   42 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR   42 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            346899999999999999999999997  88887764

>PRK06949 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.21  Score=47.11  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=32.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..++|.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            347899999999999999999999998  899999876

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.97  E-value=0.14  Score=52.06  Aligned_cols=71  Identities=21%  Similarity=0.490  Sum_probs=45.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+||||+|++|.-+...|... .+ +.+|.++......|....+...  .  +. +.. .|.. .++++|+|+.+++
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~--~--l~-v~~-~~~~-~~~~~Divf~a~~   77 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR--E--II-IQE-AKIN-SFEGVDIAFFSAG   77 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc--c--eE-EEe-CCHH-HhcCCCEEEECCC
Confidence            479999999999999999988854 44 1357777665422222222221  1  21 111 2333 5799999999865

>PRK06953 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.25  Score=45.92  Aligned_cols=103  Identities=21%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh---hcC--CCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS---ALK--GVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~---al~--~aDiVIi  167 (412)
                      |+++.|+||+|.+|..++..|+..|.  +|+++|.+....  .++..........+++...+.++   .+.  ..|+||.
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAEALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            35788999999999999999998897  899999875211  11111111100111211122221   122  4899999


Q ss_pred             cCCCCC---CC--CCch---hhHHHhhHHHHHHHHHHHHh
Q 015172          168 PAGVPR---KP--GMTR---DDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       168 aag~p~---k~--g~~r---~dl~~~N~~i~~~i~~~i~~  199 (412)
                      ++|...   .+  ..+.   ...+..|+.-...+.+.+.+
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  116 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLP  116 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            998752   11  1122   22345565554555555544

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.19  Score=46.69  Aligned_cols=34  Identities=26%  Similarity=0.173  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++++.+.
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            5799999999999999999999998  999999875

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.93  E-value=0.29  Score=47.00  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|+++|.+.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35789999999999999999999998  899999875

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.93  E-value=0.15  Score=47.82  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+|++|.+|..++..++..|.  .|++.|.+.
T Consensus         6 ~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          6 KVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999997  899999876

>PRK08264 short chain dehydrogenase; Validated

Probab=94.92  E-value=0.17  Score=47.24  Aligned_cols=75  Identities=23%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh---cCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA---LKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a---l~~aDiVIiaag  170 (412)
                      ++|.|+||+|.+|..++..|+.+|. .+|++.+.+..+...   ..........++.-..++++.   +...|+||.++|
T Consensus         7 ~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   82 (238)
T PRK08264          7 KVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAG   82 (238)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            5799999999999999999999884 478999987522111   111100000122112222222   345899999998


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .+
T Consensus        83 ~~   84 (238)
T PRK08264         83 IF   84 (238)
T ss_pred             cC
Confidence            73

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=94.91  E-value=0.23  Score=46.70  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      +++.|+||+|.+|..++..++..|.  +|++.+.
T Consensus         7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~   38 (247)
T PRK12935          7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYN   38 (247)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcC
Confidence            5799999999999999999999997  7777554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=94.91  E-value=0.058  Score=53.97  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||- |.+|..+|..+..-|.  +|.-||.....   .   +.    ...    ..++++.++.||+|++..
T Consensus       144 ~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~---~---~~----~~~----~~~l~ell~~sDvv~lh~  204 (311)
T PRK08410        144 KGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN---K---NE----EYE----RVSLEELLKTSDIISIHA  204 (311)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc---c---cc----Cce----eecHHHHhhcCCEEEEeC
Confidence            3579999998 9999999988877777  99999974210   0   00    011    135788899999999984

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.91  E-value=0.17  Score=48.06  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+|++|.+|..++..++..|.  +|++.|.+.
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            5788999999999999999999998  999999864

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.91  E-value=0.071  Score=52.70  Aligned_cols=56  Identities=20%  Similarity=0.405  Sum_probs=43.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||++|.+|.++++.|+..|.  .|.+++..                       +.++.+.+++||+||.+.|.
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~  212 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK  212 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence            346899999933499999999999886  88888641                       23455567999999999875


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       213 ~  213 (283)
T PRK14192        213 P  213 (283)
T ss_pred             C
Confidence            4

>PRK07035 short chain dehydrogenase; Provisional

Probab=94.89  E-value=0.15  Score=48.23  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  .|++.|.+.
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999997  999999875

>PRK07578 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.2  Score=45.75  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |++.|+||+|.+|..++..++.. .  +|++.+.+.. .+..|+.+..   .+..      .-+.+...|+||..+|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~~------~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIRA------LFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHHH------HHHhcCCCCEEEECCCCCC
Confidence            57999999999999999999888 4  8999887642 1111222211   0110      0112357899999998643


Q ss_pred             C-C--CCchhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          174 K-P--GMTRDD---LFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       174 k-~--g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      . +  +.+..+   .+..|+.....+.+.+.++. +.+.+++++
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            1 1  122222   23344444444455444433 445555544

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.88  E-value=0.055  Score=56.29  Aligned_cols=99  Identities=20%  Similarity=0.275  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..+|+|+|+ |.||..++..|...|. .+|+++|.+..  ...+..+..    .   .+ ...++.+.+.++|+||.+.+
T Consensus       180 ~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~----~---~i-~~~~l~~~l~~aDvVi~aT~  249 (417)
T TIGR01035       180 GKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG----E---AV-KFEDLEEYLAEADIVISSTG  249 (417)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC----e---Ee-eHHHHHHHHhhCCEEEECCC
Confidence            468999998 9999999999988883 48999999762  222222211    1   11 11356678899999999976


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      .|..         .-+.+    ..+.....- ...+++=.++|-|
T Consensus       250 s~~~---------ii~~e----~l~~~~~~~~~~~~viDla~Prd  281 (417)
T TIGR01035       250 APHP---------IVSKE----DVERALRERTRPLFIIDIAVPRD  281 (417)
T ss_pred             CCCc---------eEcHH----HHHHHHhcCCCCeEEEEeCCCCC
Confidence            5531         11112    222221111 2457777899988

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK12747 short chain dehydrogenase; Provisional

Probab=94.86  E-value=0.34  Score=45.82  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      +.+.|+||+|.+|..++..|+..|.  .|++.+.
T Consensus         5 k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          5 KVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            5789999999999999999999998  8888754

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.83  E-value=0.62  Score=43.72  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.+.+
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            5799999999999999999999997  88876553

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.82  E-value=0.25  Score=41.96  Aligned_cols=71  Identities=25%  Similarity=0.375  Sum_probs=38.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCchhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMNVKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+|+|++|.+|..++..+...+-+ +++-+ +.+...+......+...... ...+. ..+++  ..++|+||++.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcC
Confidence            6899997699999998888886322 45444 65432221111112111111 11111 13343  35999999984

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.82  E-value=0.98  Score=44.10  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|+|++|.||..++..+...+-+.=+.++|.........++......... .+..++|+++...++|+||.+.
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~-gv~~~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKV-GVPVTDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcC-CceeeCCHHHhcCCCCEEEECC
Confidence            479999995599999999988876433345567743211001122111000000 1122467765435689999984

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.27  Score=48.69  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||++.+|..++..|+..|.  .|++.+.+.
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~   48 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNR   48 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46788999999999999999999997  999999876

>PRK12743 oxidoreductase; Provisional

Probab=94.82  E-value=0.66  Score=44.06  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      ++|.|+||+|.+|..++..++..|.  +|++.+..
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~   35 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHS   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            5789999999999999999999998  88887653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.81  E-value=0.16  Score=47.61  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=45.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||.|||+ |.||...+..|...|.  +|++++.+... ...++.+..   .+......-+. +.+.++|+||.+.+
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~~-~~l~~adlViaaT~   79 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFEP-SDIVDAFLVIAATN   79 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCCh-hhcCCceEEEEcCC
Confidence            469999999 9999999999999986  89999764321 112232221   11111111223 36899999998843

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=94.81  E-value=0.094  Score=52.26  Aligned_cols=72  Identities=10%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+++|||+ |..|...+..++.-.-+.+|++||++.  ....+.++.+. ....+.   ...+.++++++||||+.+.
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~---~~~~~~eav~~aDIV~taT  190 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIR---PVDNAEAALRDADTITSIT  190 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEE---EeCCHHHHHhcCCEEEEec
Confidence            478999998 999998877666543468999999987  34445555542 111122   2356788999999999874

>PLN02494 adenosylhomocysteinase

Probab=94.81  E-value=0.15  Score=53.71  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .++|+|+|. |.+|..+|..+...|.  .|+.+|+++.+ ..+.+  +. ..  +      .+++++++.+|+||.+.|.
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G-~~--v------v~leEal~~ADVVI~tTGt  319 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EG-YQ--V------LTLEDVVSEADIFVTTTGN  319 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cC-Ce--e------ccHHHHHhhCCEEEECCCC
Confidence            578999998 9999999999988887  89999998632 12211  11 10  1      1345678999999998553


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      .               .++.  .+.+...-+++++++++-+
T Consensus       320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        320 K---------------DIIM--VDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             c---------------cchH--HHHHhcCCCCCEEEEcCCC
Confidence            2               1111  1223333378999999875

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.81  E-value=0.068  Score=55.64  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||.|||+ |.||..++..|+..|. .+|.++..+..++  ..|.+.......   ....++.+.+.++|+||.+.+.|
T Consensus       181 ~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~ra--~~La~~~~~~~~---~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        181 SKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIEKA--QKITSAFRNASA---HYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHH--HHHHHHhcCCeE---ecHHHHHHHhccCCEEEECcCCC
Confidence            468999998 9999999999998885 4899999875322  222221100111   11245556799999999998776


Q ss_pred             C
Q 015172          173 R  173 (412)
Q Consensus       173 ~  173 (412)
                      .
T Consensus       254 ~  254 (414)
T PRK13940        254 E  254 (414)
T ss_pred             C
Confidence            3

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.79  E-value=0.086  Score=53.13  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=46.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++++|||. |.+|..+|..+..-|.  +|+-+|.... .+..+...      . .+   .++++.++.||+|++.+
T Consensus       145 ~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~-~y---~~l~ell~~sDii~l~~  208 (324)
T COG1052         145 RGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------A-RY---VDLDELLAESDIISLHC  208 (324)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------c-ee---ccHHHHHHhCCEEEEeC
Confidence            3689999998 9999999998885566  9999998753 11111111      1 12   12667899999999985

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.78  E-value=0.13  Score=42.88  Aligned_cols=96  Identities=25%  Similarity=0.283  Sum_probs=55.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~p~k  174 (412)
                      |.|+|. |.+|..++..|...+.  +++++|.++..  ...+..........+.+-...+ +..+.+||.||++.+    
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD----   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcccccccccchhhhHHhhcCccccCEEEEccC----
Confidence            578998 9999999999999776  99999998721  1111211111000010000001 125689999999832    


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172          175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                           .|  ..|    ..++..+++..|+..+++..+
T Consensus        72 -----~d--~~n----~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 -----DD--EEN----LLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             -----SH--HHH----HHHHHHHHHHTTTSEEEEEES
T ss_pred             -----CH--HHH----HHHHHHHHHHCCCCeEEEEEC
Confidence                 11  334    345556677778776655554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.76  E-value=0.17  Score=53.02  Aligned_cols=128  Identities=20%  Similarity=0.259  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.+||.|+|. |..|.+ +|..|...|.  +|...|.+... ...+|....    +..+.+. +. +.+.++|+||...|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~~-~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-DA-ENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-CH-HHCCCCCEEEECCC
Confidence            3468999999 999999 7999999999  99999987532 122343321    2222222 33 36889999999988


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhCCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKGVYDP  232 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~sg~~~  232 (412)
                      +|...-. .......+++++.++-- +.+.+++..+|-+  ||==++++-++.++++..+ +++
T Consensus        76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g-~~~  136 (461)
T PRK00421         76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG-LDP  136 (461)
T ss_pred             CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC-CCC
Confidence            8753211 11111234444332111 1122212123334  4443344556677777653 443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.73  E-value=0.078  Score=52.74  Aligned_cols=56  Identities=18%  Similarity=0.425  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+|.||.++|..|+..|.  +|.+++...                       .++++.++.||+||.+.|.
T Consensus       157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~--tVtv~~~rT-----------------------~~l~e~~~~ADIVIsavg~  211 (296)
T PRK14188        157 SGLNAVVIGRSNLVGKPMAQLLLAANA--TVTIAHSRT-----------------------RDLPAVCRRADILVAAVGR  211 (296)
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHhCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            457999999779999999999999998  888885321                       1345678999999999876


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       212 ~  212 (296)
T PRK14188        212 P  212 (296)
T ss_pred             h
Confidence            5

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.72  E-value=0.11  Score=52.23  Aligned_cols=72  Identities=11%  Similarity=0.096  Sum_probs=50.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ....++|||+ |..+...+..+..-.-+.+|++||++.  ....+..+.+..  ..+.   ...+.++++++||||+.+.
T Consensus       127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v~---~~~~~~~av~~ADIV~taT  200 (315)
T PRK06823        127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAVN---TTLDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcEE---EECCHHHHhcCCCEEEEec
Confidence            3578999998 999988887666553458999999987  333333333321  1121   2356788999999999874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.71  E-value=0.13  Score=49.00  Aligned_cols=34  Identities=24%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+  +.+|..+|..|+..|.  .|++.+.+.
T Consensus         8 k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          8 KKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            568889996  5899999999999998  899998864

>PRK07023 short chain dehydrogenase; Provisional

Probab=94.70  E-value=0.097  Score=49.26  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +|+|.|+||+|.+|..++..++..|.  +|++.+.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            57899999999999999999999998  899999865

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.70  E-value=0.13  Score=53.66  Aligned_cols=125  Identities=19%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh---hhhhcccCCCCceeeecCCC-cH---HhhcCCCcEEEE
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV---AADLSHCNTPSQVLDFTGPE-EL---ASALKGVNVVVI  167 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~---~~dL~~~~~~~~v~~i~~t~-d~---~~al~~aDiVIi  167 (412)
                      ||.|+|+ |..|.+.|..|+..|.  +|.+.|.+.....   ...|....    +..+.+.. +.   .+.+.+.|+||.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999998 9999999999999998  9999998752111   11233221    22222221 11   124788999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKG  228 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~s  228 (412)
                      +.|.|...-. .......+++++.++....+... +..+|-+  ||==++++-+++.++...+
T Consensus        75 s~gi~~~~~~-~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         75 SPGIPWDHPT-LVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CCCCCCCCHH-HHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            9888742111 11112345555555543322222 2223334  4543445567778877663

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.69  E-value=0.07  Score=53.52  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.+|..+|..+..-|.  +|.-||....        +..    ..    ..++++.++.||+|++..
T Consensus       147 ~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~--------~~~----~~----~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        147 EGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGR--------PAR----PD----RLPLDELLPQVDALTLHC  205 (317)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCC--------ccc----cc----ccCHHHHHHhCCEEEECC
Confidence            3479999998 9999999998887787  9999987421        000    11    125778899999999984

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.68  E-value=0.21  Score=47.60  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999998  899999875

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.64  E-value=0.22  Score=48.81  Aligned_cols=89  Identities=18%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh-cCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA-LKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a-l~~aDiVIiaa  169 (412)
                      .+||+|||. |.||..++..+...+.  +.-+.++|.+..  ....+...     ..   ..+|+++- ..+.|+||++|
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~--~~~~~~~~-----~~---~~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAAD--LPPALAGR-----VA---LLDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHH--HHHHhhcc-----Cc---ccCCHHHHhhcCCCEEEECC
Confidence            379999998 9999999988765432  122334555431  12222221     11   12456642 38899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      +                ...++++++.+-+..-|-+++-
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~S   93 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIICS   93 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEEC
Confidence            6                5778888888887777776633

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.64  E-value=0.36  Score=45.90  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  .|++.+.+.
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~   41 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSD   41 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            46899999999999999999999997  788876643

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.63  E-value=0.23  Score=48.12  Aligned_cols=69  Identities=12%  Similarity=0.218  Sum_probs=45.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc------CC-CcEEEE
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL------KG-VNVVVI  167 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~-aDiVIi  167 (412)
                      ||.|+||+|++|..++..|...|.  +|+....+......     ........++.-..++.+++      ++ +|.|+.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~-----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAG-----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccC-----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999999998  89999887521110     01000011222223444555      67 999998


Q ss_pred             cCC
Q 015172          168 PAG  170 (412)
Q Consensus       168 aag  170 (412)
                      ..+
T Consensus        74 ~~~   76 (285)
T TIGR03649        74 VAP   76 (285)
T ss_pred             eCC
Confidence            754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.62  E-value=0.12  Score=49.38  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus        10 k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171         10 KIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            5788999999999999999999998  999999875

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.61  E-value=0.79  Score=42.88  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..++..|.  .|+++|.+.
T Consensus         7 k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            5899999999999999999999998  899999986

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.78  Score=43.65  Aligned_cols=35  Identities=29%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             CceEEEEcCCC-CcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAG-GIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG-~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+| .+|..++..++..|.  .|++.|.+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            46899999876 699999999999998  899999875

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=94.60  E-value=0.23  Score=46.37  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+|++|.+|..++..++..|.  .|++.|.+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            4789999999999999999999997  899999874

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=94.59  E-value=0.13  Score=49.99  Aligned_cols=86  Identities=14%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCCCCC-
Q 015172           98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGVPRK-  174 (412)
Q Consensus        98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~p~k-  174 (412)
                      |+||+|++|+.++..|...|.  ++++.....    ..|+.+            ..++++.++  +.|+||.+|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeeccc
Confidence            789999999999999998886  555543211    112211            122333333  57999999876321 


Q ss_pred             --CCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          175 --PGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       175 --~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                        ......+.+..|......+++.+++..
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~   92 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHG   92 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcC
Confidence              122345567789999999999998865

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.58  E-value=0.23  Score=46.21  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+|++|.+|..++..++..|.  +|++...+.
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~   39 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASS   39 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            36899999999999999999999997  887776654

>PRK07985 oxidoreductase; Provisional

Probab=94.57  E-value=0.46  Score=46.55  Aligned_cols=115  Identities=19%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhc-ccCCCC--ceeeecCCCc-------HHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLS-HCNTPS--QVLDFTGPEE-------LASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~-~~~~~~--~v~~i~~t~d-------~~~al~  160 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.+.+..   .....++. +.....  ...+++-..+       ..+.+.
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  127 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG  127 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999998  8999876431   11111111 111000  0011111111       112345


Q ss_pred             CCcEEEEcCCCCC--CC--CCchhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR--KP--GMTRDD---LFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~--k~--g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..+|...  .+  ..+..+   .+..|+.-.-.+.+.+.++. .++.||++|
T Consensus       128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS  185 (294)
T PRK07985        128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS  185 (294)
T ss_pred             CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence            7899999988632  11  222222   34556554444555554433 345565554

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.56  E-value=0.1  Score=51.68  Aligned_cols=57  Identities=26%  Similarity=0.454  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+..||.+++.+|..++-  .|.+...                       .|.|+++.+++||+||.++|.
T Consensus       154 ~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtichs-----------------------~T~~l~~~~~~ADIvIsAvGk  208 (287)
T PRK14173        154 AGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAHS-----------------------KTQDLPAVTRRADVLVVAVGR  208 (287)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecCC
Confidence            457999999999999999999988875  6665531                       134667778999999999997


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus       209 p~  210 (287)
T PRK14173        209 PH  210 (287)
T ss_pred             cC
Confidence            73

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.56  E-value=0.27  Score=51.15  Aligned_cols=117  Identities=26%  Similarity=0.299  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHH-------hhcCCCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      +.+++.|+||+|.+|..++..++..|.  +|++.|.........++.+. ......-+++...+.+       +.+...|
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            346899999999999999999999998  89999985311111111110 1000001221111111       1133689


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhh--C-CCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADN--C-PDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~--~-p~aiviv~T  210 (412)
                      +||.++|.....   .++.   ...+..|+.-...+.+.+.+.  . +++.|+++|
T Consensus       287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~S  342 (450)
T PRK08261        287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVS  342 (450)
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEEC
Confidence            999999875421   1222   223445665555555555442  1 446666655

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.56  E-value=0.37  Score=45.39  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|++|..++..|+..|.  +|+++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4688889999999999999999998  999999754

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=94.55  E-value=0.22  Score=51.98  Aligned_cols=130  Identities=18%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             eEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           95 KVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        95 KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      ||.+||. |..|.+ +|..|...|.  +|...|.+... ...+|....    +..+.+ .+. +.++++|+||...|+|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~~-~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HSA-ENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CCH-HHCCCCCEEEECCCCCC
Confidence            5889998 999998 9999999999  99999986532 222333221    222333 343 36889999999988875


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      ..-. .......+++++.+.-- +.+...+..+|-+  ||==++++-+++.+++.. |+++.-++|
T Consensus        71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~-g~~~~~~~g  133 (448)
T TIGR01082        71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA-GLDPTVVVG  133 (448)
T ss_pred             CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc-CCCCeEEEC
Confidence            2211 11111234444332211 1122211123334  444344456667777665 354544443

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK06483 dihydromonapterin reductase; Provisional

Probab=94.55  E-value=0.36  Score=45.14  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            5788999999999999999999998  999999875

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=94.53  E-value=0.041  Score=54.07  Aligned_cols=98  Identities=24%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+|++|++|+.+...+...|+  +++.++...     .|+.+..   .+..     -++ . .+.|+||.+|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~~-----~~~-~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVAK-----LLE-A-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHHH-----HHH-H-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHHH-----HHH-H-hCCCeEeccceeec
Confidence            8999999999999999999998887  888886542     1222210   0110     011 1 35899999987642


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          174 KP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       174 k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..  ..+.......|....+.+++.+.+.  ++.+|.+|
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S  100 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS  100 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence            11  1233444567778888888887764  44444443

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.52  E-value=0.11  Score=51.36  Aligned_cols=56  Identities=20%  Similarity=0.389  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.++.||..++.+|...+.  .|.+.+.                       .|.|+.+.+++||+||.++|.
T Consensus       157 ~Gk~vvViGrs~iVGkPla~lL~~~~a--tVt~~hs-----------------------~t~~l~~~~~~ADIVV~avG~  211 (285)
T PRK14189        157 RGAHAVVIGRSNIVGKPMAMLLLQAGA--TVTICHS-----------------------KTRDLAAHTRQADIVVAAVGK  211 (285)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEecC-----------------------CCCCHHHHhhhCCEEEEcCCC
Confidence            457999999977779999999998886  6766421                       134666789999999999986


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       212 ~  212 (285)
T PRK14189        212 R  212 (285)
T ss_pred             c
Confidence            5

>PRK06932 glycerate dehydrogenase; Provisional

Probab=94.51  E-value=0.088  Score=52.74  Aligned_cols=60  Identities=17%  Similarity=0.308  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||- |.+|..+|..+...|.  +|..+|.....       ...    .    +..++++.++.||+|++..
T Consensus       146 ~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~-------~~~----~----~~~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        146 RGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS-------VCR----E----GYTPFEEVLKQADIVTLHC  205 (314)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc-------ccc----c----ccCCHHHHHHhCCEEEEcC
Confidence            3579999998 9999999988877787  89888853210       000    0    1235778899999999984

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.51  E-value=0.13  Score=45.65  Aligned_cols=57  Identities=28%  Similarity=0.373  Sum_probs=46.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      -..++|.|+|.+..+|..++..|..+|.  .|.+.|.+                       |.|+++.+++||+||.+.|
T Consensus        26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg   80 (140)
T cd05212          26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP   80 (140)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence            3457999999999999999999998887  77777643                       1245668999999999988


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .+
T Consensus        81 ~~   82 (140)
T cd05212          81 KP   82 (140)
T ss_pred             CC
Confidence            76

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14851 hypothetical protein; Provisional

Probab=94.49  E-value=0.15  Score=56.36  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||+|+|+ |.+|+.++..|+..|+ ++++|+|-|.
T Consensus        44 ~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~   77 (679)
T PRK14851         44 AKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ   77 (679)
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence            68999998 9999999999999997 7999999874

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.44  E-value=0.23  Score=47.70  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=30.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||.|+|+ |.+|..++..|+..|+ ++++++|.|.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gv-g~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGF-GQIHVIDMDT   33 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999995 7999999985

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=94.44  E-value=0.14  Score=47.57  Aligned_cols=113  Identities=24%  Similarity=0.292  Sum_probs=62.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCCcHHhhc-------CCCc
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPEELASAL-------KGVN  163 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al-------~~aD  163 (412)
                      |.|+|++|.+|..++..++.+|.  +|++.+.+.   ......++.+.....  ...+++...++++.+       ...|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            45889999999999999999998  899998764   122222332221110  001222112222222       3569


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMT---RDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~---r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      +||..+|.....   +.+   ..+.+..|......+.+.+.++.   ....++++|
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~s  134 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINIS  134 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence            999998864311   111   23345566665566666555442   233454444

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK14852 hypothetical protein; Provisional

Probab=94.42  E-value=0.15  Score=57.93  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|+|+ |.+|+.++..|+..|+ ++++|+|-|.
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~  366 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDA  366 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence            368999998 9999999999999997 8999999875

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.41  E-value=0.15  Score=50.32  Aligned_cols=75  Identities=17%  Similarity=0.266  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|.|+|| |..+.++++.|+..|. .+|.++|++..  +..+.++.+......+... ...++.+.+.++|+||.+..
T Consensus       127 ~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        127 LDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcCC
Confidence            468999998 9999999999999885 58999999763  3333333211111111111 11122334678999999853

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.38  E-value=0.34  Score=53.24  Aligned_cols=90  Identities=22%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc--CCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL--KGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al--~~aDiVIia  168 (412)
                      .+.|||.|+||+|++|++++..|...|.  +|... .       .|+.+.            ..+...+  .+.|+||.+
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~------------~~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDR------------SSLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccH------------HHHHHHHHhhCCCEEEEC
Confidence            4468999999999999999999988887  65311 0       011110            0011112  368999999


Q ss_pred             CCCCCCC--C---CchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          169 AGVPRKP--G---MTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       169 ag~p~k~--g---~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      |+.-..+  +   .+..+.+..|+.....+++.+.+...
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            8764322  1   13455677899999999999988654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.37  E-value=0.21  Score=46.98  Aligned_cols=35  Identities=31%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..++..|.  +|++.|.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            35799999999999999999999998  999999875

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.35  E-value=0.11  Score=52.68  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      |+||+|+||+|.+|..++..+...+.+.-+.+.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~   36 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR   36 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence            57999999999999999988887754333455663

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.34  E-value=0.2  Score=50.29  Aligned_cols=33  Identities=36%  Similarity=0.599  Sum_probs=30.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||.|+|+ |.+|..++..|+..|+ +.++|+|.+.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gv-g~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGF-GEIHIIDLDT   33 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence            6899998 9999999999999995 7999999875

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.34  E-value=0.12  Score=51.15  Aligned_cols=57  Identities=19%  Similarity=0.399  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+..||.+++.+|..++-  .|.+.+.                       .|.|+++.++.||+||.++|.
T Consensus       157 ~Gk~vvViGrS~iVG~Pla~lL~~~~a--tVt~chs-----------------------~t~~l~~~~~~ADIvI~AvG~  211 (284)
T PRK14190        157 SGKHVVVVGRSNIVGKPVGQLLLNENA--TVTYCHS-----------------------KTKNLAELTKQADILIVAVGK  211 (284)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEeC-----------------------CchhHHHHHHhCCEEEEecCC
Confidence            457999999999999999999988886  6766642                       134666789999999999987


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus       212 p~  213 (284)
T PRK14190        212 PK  213 (284)
T ss_pred             CC
Confidence            73

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.33  E-value=0.41  Score=43.09  Aligned_cols=66  Identities=14%  Similarity=0.065  Sum_probs=43.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||.|+|+ |.||...+..|...|.  +|++++.+.... ..++..      +......-+. +.+.++|+||.+.
T Consensus        13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~-l~~l~~------i~~~~~~~~~-~dl~~a~lViaaT   78 (157)
T PRK06719         13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKE-MKELPY------ITWKQKTFSN-DDIKDAHLIYAAT   78 (157)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHH-HHhccC------cEEEecccCh-hcCCCceEEEECC
Confidence            478999999 9999999999999998  999997542221 122211      1111111122 3689999999983

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.33  E-value=0.3  Score=45.88  Aligned_cols=70  Identities=16%  Similarity=0.104  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||.|||+ |.+|..-+..|+..|-  .|+++|.+.. ....++.+..   .+..+.+.-+. +.+.++|+||.+.+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~~-~dl~~~~lVi~at~   78 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFDA-DILEGAFLVIAATD   78 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCCH-HHhCCcEEEEECCC
Confidence            368999999 9999999999999997  8999987642 1122232221   23322233233 36899999999844

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=94.33  E-value=0.13  Score=52.30  Aligned_cols=71  Identities=21%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..+++|||+ |..+...+..++.-.-+.+|++||++.  ....+.++.+..  ..+.   ...+.++++++||||+.+.
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~---~~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIV---ACRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEE---EeCCHHHHHhcCCEEEEec
Confidence            468999998 999988776555432357999999987  344555554421  1122   2467888999999999874

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.32  E-value=0.22  Score=50.46  Aligned_cols=70  Identities=20%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+||||+|++|..+...|..+  +. .+|.++--+...|.-..+..  ..  +. +.. .+. .++.++|+|+.+.+
T Consensus         4 ~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG~~~~~~~--~~--~~-v~~-~~~-~~~~~~Dvvf~a~p   75 (336)
T PRK08040          4 GWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAGETLRFGG--KS--VT-VQD-AAE-FDWSQAQLAFFVAG   75 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCCceEEECC--cc--eE-EEe-Cch-hhccCCCEEEECCC
Confidence            479999999999999999988884  53 37777754432222222211  11  21 111 121 24689999999864

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.31  E-value=0.27  Score=47.61  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCC----CC-----eEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPL----VS-----ALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl----~~-----ev~L~Di~~  129 (412)
                      +..||.|||+ |.+|+.++..|+..|+    ++     +|+|+|-|.
T Consensus        10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3479999998 9999999999997642    11     899999875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.31  E-value=0.26  Score=46.32  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      +++|.|+||+|.+|..++..++..|.  +|++.+.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            35799999999999999999999997  7877654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.31  E-value=0.26  Score=50.11  Aligned_cols=71  Identities=20%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|+||+|++|..+...|..+++ ..++..+......+...+.  ......+.    ..+. +++.++|+||.+++
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~~~~v~----~~~~-~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGRDYTVE----ELTE-DSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCceeEEE----eCCH-HHHcCCCEEEECCC
Confidence            47999999999999999988887543 2366666443321221111  11111111    1233 36799999999875

>PLN00203 glutamyl-tRNA reductase

Probab=94.29  E-value=0.1  Score=55.94  Aligned_cols=73  Identities=15%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..||+|||+ |.||..++..|...|. .+|++++.+..+  ..+..+.  ..  .+. +....++.+++.++|+||.+.+
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~--g~--~i~-~~~~~dl~~al~~aDVVIsAT~  338 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP--DV--EII-YKPLDEMLACAAEADVVFTSTS  338 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC--CC--ceE-eecHhhHHHHHhcCCEEEEccC
Confidence            478999998 9999999999988884 579999987622  2222221  11  111 1122456668999999999865


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .+
T Consensus       339 s~  340 (519)
T PLN00203        339 SE  340 (519)
T ss_pred             CC
Confidence            44

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.29  E-value=0.28  Score=46.89  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~   44 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQ   44 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            35799999999999999999999998  899998875

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.27  E-value=0.13  Score=50.90  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+..||.+++.+|..++-  .|.+.+.                       .|.|+++.+++||+||.++|.
T Consensus       158 ~Gk~vvViGrS~iVGkPla~lL~~~~a--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAvGk  212 (284)
T PRK14177        158 TGKNAVVVGRSPILGKPMAMLLTEMNA--TVTLCHS-----------------------KTQNLPSIVRQADIIVGAVGK  212 (284)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEeCCC
Confidence            457999999999999999999998876  6666542                       134666678999999999997


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus       213 ~~  214 (284)
T PRK14177        213 PE  214 (284)
T ss_pred             cC
Confidence            73

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.26  E-value=0.1  Score=52.63  Aligned_cols=71  Identities=21%  Similarity=0.395  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ++||+|+||+|++|..+...|..+++ ..+|+.+-.+...+...++..  ..  +. +. ..+. +.++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g--~~--i~-v~-d~~~-~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG--KE--LK-VE-DLTT-FDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC--ce--eE-Ee-eCCH-HHHcCCCEEEECCC
Confidence            47999999999999999999988654 136666644432222222211  11  11 11 1122 24689999999965

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.24  E-value=0.14  Score=50.74  Aligned_cols=57  Identities=16%  Similarity=0.348  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+..+|.+++.+|..++-  .|.+.+.                       .|.|+++.+++||+||.++|.
T Consensus       163 ~Gk~vvViGrs~iVGkPla~lL~~~~a--tVtv~hs-----------------------~T~~l~~~~~~ADIvv~AvG~  217 (287)
T PRK14176        163 EGKNAVIVGHSNVVGKPMAAMLLNRNA--TVSVCHV-----------------------FTDDLKKYTLDADILVVATGV  217 (287)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHCCC--EEEEEec-----------------------cCCCHHHHHhhCCEEEEccCC
Confidence            357999999966699999999998886  7777652                       134566678999999999998


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus       218 p~  219 (287)
T PRK14176        218 KH  219 (287)
T ss_pred             cc
Confidence            83

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.22  E-value=0.62  Score=47.22  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCC-CcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKG-VNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~-aDiVIiaa  169 (412)
                      +..+|+|+|+ |.+|......+...|.  +|+.+|+++. ...+.+|-.   ...+. .. ..|..+.+++ +|+||.++
T Consensus       166 pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~-~~-~~~~~~~~~~~~d~ii~tv  237 (339)
T COG1064         166 PGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVIN-SS-DSDALEAVKEIADAIIDTV  237 (339)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEE-cC-CchhhHHhHhhCcEEEECC
Confidence            3579999999 9887776666666786  9999999873 333333321   11111 11 1222233333 99999997


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC-CCc--HHHHHHHHHHhCCCCCCCeEecc
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV-NST--VPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv-~~~--~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      + +               .-+....+.   ..+++.++.+.+|- ...  +|+. .+   .  +...+|.|..
T Consensus       238 ~-~---------------~~~~~~l~~---l~~~G~~v~vG~~~~~~~~~~~~~-~l---i--~~~~~i~GS~  285 (339)
T COG1064         238 G-P---------------ATLEPSLKA---LRRGGTLVLVGLPGGGPIPLLPAF-LL---I--LKEISIVGSL  285 (339)
T ss_pred             C-h---------------hhHHHHHHH---HhcCCEEEEECCCCCcccCCCCHH-Hh---h--hcCeEEEEEe
Confidence            5 3               112223333   34799999999994 321  2221 11   1  3456788873

>PRK12744 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.27  Score=46.65  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .++|.|+||+|.+|..++..++..|.  ++++++.+
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~   41 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN   41 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence            36899999999999999999999997  77777643

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=94.18  E-value=0.14  Score=51.77  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=51.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ...++|||+ |..+...+..+..---+.+|++||+++  .+..+.++......    .+...++.++++++||+||.+
T Consensus       130 a~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~----~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGE----AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCc----cceeccCHHHHhhcCCEEEEe
Confidence            467999998 999888887776653357999999997  45555555554322    122346778899999999997

>PRK13529 malate dehydrogenase; Provisional

Probab=94.18  E-value=0.28  Score=52.72  Aligned_cols=106  Identities=23%  Similarity=0.361  Sum_probs=71.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh----CCCC-----CeEEEEecCch--hhhhhhhcccC--C---CCcee---eecCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM----SPLV-----SALHLYDVMNV--KGVAADLSHCN--T---PSQVL---DFTGPE  153 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~----~gl~-----~ev~L~Di~~~--~g~~~dL~~~~--~---~~~v~---~i~~t~  153 (412)
                      ..||.+.|| |..|.++|.+|..    .|+-     ..+.++|.+-+  ... .||.+..  +   .....   .-....
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~~~  372 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM-PDLLDFQKPYARKREELADWDTEGDVI  372 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC-CcchHHHHHHhhhcccccccccccCCC
Confidence            468999998 9999999988876    5763     48999998741  111 1122111  0   00010   001235


Q ss_pred             cHHhhcCCC--cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          154 ELASALKGV--NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       154 d~~~al~~a--DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      ++.++++++  |+.|=+.+.|   |           -+-+++++.|.++|++.||+-.|||..
T Consensus       373 ~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        373 SLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            788999998  9998776544   1           233678888888999999999999986

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=94.17  E-value=2.2  Score=41.75  Aligned_cols=156  Identities=13%  Similarity=0.119  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhH
Q 015172          106 GQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDL  182 (412)
Q Consensus       106 G~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl  182 (412)
                      |+.+|+.++..|+  +|+|-|.+.   ...+...+.+..    +...  ++|- ++.+.+.+.|...-..          
T Consensus        33 Ga~mAiefAeAGH--DVVLaePn~d~~dd~~w~~vedAG----V~vv--~dD~-eaa~~~Ei~VLFTPFG----------   93 (340)
T COG4007          33 GARMAIEFAEAGH--DVVLAEPNRDIMDDEHWKRVEDAG----VEVV--SDDA-EAAEHGEIHVLFTPFG----------   93 (340)
T ss_pred             chHHHHHHHHcCC--cEEeecCCccccCHHHHHHHHhcC----cEEe--cCch-hhhhcceEEEEecccc----------
Confidence            6788999999999  999999975   122222233332    3322  3454 5899999988862111          


Q ss_pred             HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCC-CCCeEeccccchHHHHHHHHHHcCCCCCCe
Q 015172          183 FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYD-PKKLFGVTTLDVVRANTFVAQKKNLKLIDV  261 (412)
Q Consensus       183 ~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~-~~kviGlt~Lds~R~~~~la~~l~v~~~~V  261 (412)
                       ..+..|.+++...    .|++-+  +.|++++-.+.+-+.+...  ++ +.+=+|+....-          -+++-..-
T Consensus        94 -k~T~~Iarei~~h----vpEgAV--icnTCT~sp~vLy~~LE~~--Lr~kR~dVGvssmHP----------AgvPGtp~  154 (340)
T COG4007          94 -KATFGIAREILEH----VPEGAV--ICNTCTVSPVVLYYSLEGE--LRTKREDVGVSSMHP----------AGVPGTPQ  154 (340)
T ss_pred             -hhhHHHHHHHHhh----CcCCcE--ecccccCchhHHHHHhhhh--hcCchhhcCccccCC----------CCCCCCCC
Confidence             2445555555554    565444  4677764322322222221  22 223344421110          12322222


Q ss_pred             e-eeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhc
Q 015172          262 D-VPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEA  309 (412)
Q Consensus       262 ~-~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~  309 (412)
                      + .|++|+++-. -.         .--++++.+...+-....|.+++..
T Consensus       155 h~~yviagr~t~-g~---------elATeEQi~r~velaes~Gk~~yv~  193 (340)
T COG4007         155 HGHYVIAGRSTE-GK---------ELATEEQIERCVELAESTGKEVYVL  193 (340)
T ss_pred             CceEEEeccCCC-ce---------eeccHHHHHHHHHHHHhcCCceEec
Confidence            2 4677766411 10         1136677776666667777666554

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=94.16  E-value=0.21  Score=51.55  Aligned_cols=29  Identities=24%  Similarity=0.167  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC-CCeEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL-VSALH  123 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~  123 (412)
                      +||+|.|+ |.+|..+...+..++. ..+|+
T Consensus        61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv   90 (395)
T PLN03096         61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV   90 (395)
T ss_pred             cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE
Confidence            69999999 9999999988776632 12666

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.16  E-value=0.24  Score=48.87  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|...
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~   46 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS   46 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence            46788999999999999999999998  899999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-117
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-117
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-102
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		1e-101
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		8e-91
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		8e-91
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-89
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		3e-82
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-21
1guz_A	310	Structural Basis For Thermophilic Protein Stability		3e-20
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		5e-20
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		5e-20
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		7e-20
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		3e-19
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-18
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-17
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		9e-17
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-15
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		1e-15
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-15
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-15
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-15
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-15
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		4e-15
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		5e-15
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		6e-15
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		6e-15
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		8e-15
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		2e-14
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		1e-13
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		2e-13
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-13
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		4e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		5e-13
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		9e-13
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		9e-13
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-12
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		2e-12
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-12
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		4e-12
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		6e-12
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		2e-11
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		2e-11
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		3e-11
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		3e-11
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		3e-11
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		4e-11
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		4e-11
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		5e-11
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		2e-10
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		6e-10
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		6e-10
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-09
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-09
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-09
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		6e-09
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		7e-09
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		1e-08
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-08
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-08
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-08
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		4e-08
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		4e-08
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		4e-08
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		5e-08
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-07
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		4e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		6e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		7e-07
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		8e-07
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-06
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		1e-06
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		1e-06
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		2e-06
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-06
1ldb_A	317	Structure Determination And Refinement Of Bacillus		3e-06
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		3e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		3e-06
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		4e-06
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		5e-06
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		7e-05
3ldh_A	330	A Comparison Of The Structures Of Apo Dogfish M4 La		7e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/311 (66%), Positives = 245/311 (78%), Gaps = 2/311 (0%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G +
Sbjct: 45  FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQ 104
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
           +L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A  CP A +++ISNPV
Sbjct: 105 QLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 164
Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
           NSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   L   DVDVPVVGGHAG+T
Sbjct: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 224
Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
           ILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ LR
Sbjct: 225 ILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 284
Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
            L GD  V EC FV S +TELPFFAS+V+LGRNG+E + S  L  L EYE+  LE  K E
Sbjct: 285 GLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKKE 342
Query: 394 LKASIEKGVAF 404
           L  SIEKGV+F
Sbjct: 343 LAGSIEKGVSF 353

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/314 (66%), Positives = 246/314 (78%), Gaps = 2/314 (0%)
Query: 93  SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
            FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G 
Sbjct: 8   GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQ 67
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A  CP A +++ISNP
Sbjct: 68  QQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 127
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   L   DVDVPVVGGHAG+
Sbjct: 128 VNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 187
Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ L
Sbjct: 188 TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 247
Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
           R L GD  V EC FV S +TELPFFAS+V+LGRNG+E + S  L  L EYE+  LE  K 
Sbjct: 248 RGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKK 305
Query: 393 ELKASIEKGVAFAQ 406
           EL  SIEKGV+F +
Sbjct: 306 ELAGSIEKGVSFIR 319

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 232/312 (74%), Gaps = 2/312 (0%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
           L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL  A A +CPDA I IISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 215 STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
           ST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FVA+ K L    V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 275 LPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
           +PL+S+  P V F  +++  LT RIQ AGTEVV+AKAGAGSATLSMAYA ARFV S + A
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 335 LDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394
           ++G   V EC FV+S  T+ P+F++ + LG+ G+E  +   +  ++ +E+K +    PEL
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLG--IGKISPFEEKMIAEAIPEL 299
Query: 395 KASIEKGVAFAQ 406
           KASI+KG  F +
Sbjct: 300 KASIKKGEEFVK 311

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/320 (58%), Positives = 237/320 (74%), Gaps = 2/320 (0%)
Query: 87  ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV 146
           ++  Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V
Sbjct: 22  SMSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAV 81
Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
             + GPE+L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL  A A +CP+A I
Sbjct: 82  KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMI 141
Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVV 266
            +I+NPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRANTFVA+ K L    V+VPV+
Sbjct: 142 CVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVI 201
Query: 267 GGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
           GGHAG TI+PL+S+  P V F  +++  LT RIQ AGTEVV+AKAGAGSATLSMAYA AR
Sbjct: 202 GGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 261
Query: 327 FVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386
           FV S + A++G   V EC FV+S  TE  +F++ + LG+ G+E  +   +  ++ +E+K 
Sbjct: 262 FVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLG--IGKVSSFEEKM 319
Query: 387 LEALKPELKASIEKGVAFAQ 406
           +    PELKASI+KG  F +
Sbjct: 320 ISDAIPELKASIKKGEDFVK 339

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  330 bits (846), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 225/316 (71%), Gaps = 6/316 (1%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA  CP A I II+N
Sbjct: 61  -EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PVN+TV IAAEVLK+ GVYD  KLFGVTTLD++R+NTFVA+ K  +  +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
           +TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM  AAARF  S 
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
           +RAL G+  V EC +VE +     FF+  + LG+NGVE   S  +  L+ +EQ ALE + 
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS--IGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
             LK  I  G  F  K
Sbjct: 297 DTLKKDIALGEEFVNK 312

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  330 bits (846), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 185/316 (58%), Positives = 224/316 (70%), Gaps = 6/316 (1%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA  CP A I II+N
Sbjct: 61  -EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PVN+TV IAAEVLK+ GVYD  KLFGVTTLD++R+NTFVA+ K  +  +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
           +TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM  AAARF  S 
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
           +RAL G+  V EC +VE +     FF+  + LG+NGVE      +  L+ +EQ ALE + 
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEE--RKSIGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
             LK  I  G  F  K
Sbjct: 297 DTLKKDIALGQEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  327 bits (837), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/316 (58%), Positives = 223/316 (70%), Gaps = 6/316 (1%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA  CP A I II+N
Sbjct: 61  -EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PVN+TV IAAEVLK+ GVYD  KLFGVTTLD++ +NTFVA+ K  +  +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
           +TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM  AAARF  S 
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
           +RAL G+  V EC +VE +     FF+  + LG+NGVE      +  L+ +EQ ALE + 
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEE--RKSIGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
             LK  I  G  F  K
Sbjct: 297 DTLKKDIALGQEFVNK 312

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  301 bits (772), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/314 (55%), Positives = 220/314 (70%), Gaps = 7/314 (2%)
Query: 95  KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGP 152
           KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  T   +  + G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAG- 63
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           E+   AL+G +VV+I AGV RKPG  R DLFN+NA IVK+L E +A  CP+A I II+NP
Sbjct: 64  EDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VN+TVPIAAEVLK+ GVYD +KLFGVTTLDV+R+ TFVA+ K     +V VPV+GGH+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TILPLLS+ +  V F+DEE+  LT RIQNAGTEVVEAKAG GSATLS   AA RF  + +
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
           +AL G+ +V E  +VE N     FFA  VKLG+ GVE ++      L+++E+ AL+    
Sbjct: 243 KALQGE-EVIEYAYVEGNGEHASFFAQPVKLGKEGVEEILP--YGELSDFEKAALDGXLE 299
Query: 393 ELKASIEKGVAFAQ 406
            L + I+ GV F +
Sbjct: 300 TLNSDIQIGVDFVK 313

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 38/325 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
           K++++GA G IG  +ALL+    L   ++++D++    +G A DL+HC     +P+++  
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
               E L ++    +VV+I AGVPRKP MTR DL  +NA IV ++ E V   CP+AF+  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           I+NP+++ V       K+K      K+ G++  LD  R    +++   +K  DV   VVG
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185
Query: 268 GHAGITILPLLSK-TMPSVSFTD-EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA 325
           GH G  ++PL S  T+  +  +D  E G +T    +   E+++  A  G   + +    +
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKIT---HSQINEIIKKTAFGGGEIVELLKTGS 241
Query: 326 RFVESSLRA-------LDGDGDVYEC---VFVESNLTELPFFASRVKLGRNGVESLI--- 372
            F   +  A       L     V  C   +  + N+  L F    V +G+NG+E ++   
Sbjct: 242 AFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIVN 300
Query: 373 -SSDLQGLTEYEQKALEALKPELKA 396
            S D + L     ++++ L  +LK+
Sbjct: 301 LSDDEKSLFSKSVESIQNLVQDLKS 325

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 20/294 (6%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLD--F 149
            K+ V+GA G +G   A  +    L   L L DV+    +G A D+ + + P  + D   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM-YESGPVGLFDTKV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
           TG  + A      ++V+I AG+PRKPGMTR+DL   NA IVK + + +  +  +  I ++
Sbjct: 59  TGSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           SNP++    +A     + G+   + +     LD  R  +F+A +  + + D++  V+GGH
Sbjct: 118 SNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH 174
Query: 270 AGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324
            G  ++P++   T+  +  +D    E +  L  R +N G E+VE     GSA  + A + 
Sbjct: 175 -GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSV 232
Query: 325 ARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ 377
              VES +  LD    +   V +E     +  F    VKLGRNGVE +   +L 
Sbjct: 233 VEMVESIV--LDRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLD 284

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 20/294 (6%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLD--F 149
            K+ V+GA G +G   A  I    L   L L DV+    +G   D+     P  + D   
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETG-PVGLFDTKI 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
           TG  + A      ++V+I AG+PRKPGMTR+DL   NA IVK + + +  +  +  I ++
Sbjct: 59  TGSNDYADTADS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           SNP++    +A     + G+   + +     LD  R  +F+A +  + + D++  V+GGH
Sbjct: 118 SNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH 174
Query: 270 AGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324
            G  ++P++   T+  +  +D    E +  L  R +N G E+VE     GSA  + A + 
Sbjct: 175 -GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSV 232
Query: 325 ARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ 377
              VES +  LD    +   V +E     +  F    VKLGRNGVE +   +L 
Sbjct: 233 VEMVESIV--LDRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLD 284

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 22/289 (7%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--F 149
            K+ V+GA G +G   A  +    L   L L DV+    +G A D+ + + P  + D   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM-YESGPVGLFDTKV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
           TG  + A      ++VVI AG+PRKPGMTR+DL ++NA IV+ +   + ++  +  I ++
Sbjct: 59  TGSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           SNP++    I   V  QK     +++ G+   LD  R  +F+A +  + + DV   V+GG
Sbjct: 118 SNPLD----IMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGG 173
Query: 269 HAGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
           H G  ++P++   T+  +   D    E + +L  R +  G E+V      GSA  S A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATS 231
Query: 324 AARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESL 371
               VES +  LD    +   V ++     +  F    VKLG+NGVE +
Sbjct: 232 VVEMVESIV--LDRKRVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHI 278

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 23/256 (8%)
Query: 92  ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDF 149
           A  K+ ++GA G IG  LA L  +  L   + L+D+      G A DL     P + +DF
Sbjct: 4   ARKKITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQ-TCPIEGVDF 60
Query: 150 T--GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
              G  +    L+  +VV++ AGVPRKPG +RDDL  IN  + +T+ E +  NCP+AF+ 
Sbjct: 61  KVRGTNDYKD-LENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVI 119
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
            I+NP++  V     + K  GV D K +     LD  R  TF+A + N+ +  V   V G
Sbjct: 120 CITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 268 GHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           GH G T +PL          L + +       E +  +  R ++ G E+V A    GSA 
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAY 234
Query: 318 LSMAYAAARFVESSLR 333
            + A A  +  ES L+
Sbjct: 235 YAPAAAGIQXAESFLK 250

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 36/303 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLD--FT 150
           K+A++G+ G IG  LA L  +  L   + L+D+     +G   D++  ++P    D  FT
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE-SSPVDGFDAKFT 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  + A A++G +VV++ AGVPRKPGM+RDDL  IN  +++ +   +    P+AF+  I+
Sbjct: 66  GANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NP+++ V      L++       K+ G+   LD  R   F++++ N+ + DV V V+GGH
Sbjct: 125 NPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH 180
Query: 270 AGITILPLLSKT---------MPSVSFTDEEVGDLTV-RIQNAGTEVVEAKAGAGSATLS 319
            G +++PL   +         +  + +T ++  D  + R ++ G E+V      GSA  +
Sbjct: 181 -GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYA 238
Query: 320 MAYAAARFVESSLRALDGDGDVYECVFVESNLT-----ELPFFASRVKLGRNGVESLISS 374
            A +A +  ES L+      D    + V + L+     +  +      +G NGVE +I  
Sbjct: 239 PAASAIQMAESYLK------DKKRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI 292
Query: 375 DLQ 377
           DL 
Sbjct: 293 DLD 295

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 29/297 (9%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCNTPSQVLD-- 148
           KV+V+GA G  G   A L+    L   + L D+  +    KG A D+    +P Q  D  
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEA-SPVQGFDAN 66
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             G  + A      +VVVI AG+ RKPGM+RDDL   N+ I+K++   +A + P+A I +
Sbjct: 67  IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           ++NPV++   +   V K+ G    + +     LD  R  TF+AQ+ NL + D+   V+GG
Sbjct: 126 LTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGG 182
Query: 269 HAGITILPLLSKT----MPSVSFTDEEVGDLTV-RIQNAGTEVVEAKAGAGSATLSMAYA 323
           H G  ++PL+  +    +P  +   +E  +  V R +  G E+V    G GSA     YA
Sbjct: 183 H-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAY----YA 236
Query: 324 -AARFVESSLRALDGDGDVYECVFV---ESNLTELPFFASRVKLGRNGVESLISSDL 376
            AA  VE +   L     V   +     E   ++L +    V LG NG+E +I  +L
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELEL 292

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 136/296 (45%), Gaps = 34/296 (11%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCNTPSQVLDFTG 151
            K+ ++G  G +G   A  + M      + L DV     +G A DL H  TP     FT 
Sbjct: 1   MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH-GTP-----FTR 53
Query: 152 PEELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
              + +     LKG +VV++ AGVP+KPG TR  L   NA ++K +   V+   PD+ + 
Sbjct: 54  RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVI 113
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
           +++NPV+    +    LK+ G+ DP+K+FG  T LD  R  T +AQ        V V V+
Sbjct: 114 VVTNPVDV---LTYFFLKESGM-DPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI 169
Query: 267 GGH----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
           G H          A I  +PL +          + + +   + + A  E++E K   G+ 
Sbjct: 170 GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GAT 226
Query: 317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR-VKLGRNGVESL 371
             ++A A A  VES     D    +   V++E  L       S  V LG++GVE +
Sbjct: 227 HYAIALAVADIVESIF--FDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERI 280

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 61/317 (19%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHL----YDVMNVKGVAADLSHC--NTPSQVL 147
            KV ++GA+G +G   ALL+   P +  L L    + +  ++G+  D+      T S   
Sbjct: 1   MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
            +   +E    +   +VV+I +GVPRK GM+R DL   NA IV    + +A+ C D  I 
Sbjct: 61  IYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF 119
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPK----KLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
           +I+NPV+        V+  K + D K    ++FG+ T LD +R    +A+   + + +V 
Sbjct: 120 VITNPVD--------VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 263 VPVVGGHAGITILPLLSKT----MPSVSF-------TDEEVGDLTVRIQNAGTEVVEAKA 311
             ++G H G +++PLLS T    +P   F        DE + D    ++  G +++  K 
Sbjct: 172 TRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIED----VKTKGEQIIRLKG 226
Query: 312 GAGSATLSMAYAAARFVESSLRAL-----------DGDGDVYECVFVESNLTELPFFASR 360
           G+     +      R + ++ + L           DG  DV  C+ V             
Sbjct: 227 GSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDV--CIGVP------------ 272
Query: 361 VKLGRNGVESLISSDLQ 377
           VK+GR+G+E ++S +L 
Sbjct: 273 VKIGRDGIEEVVSIELD 289

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 27/297 (9%)
Query: 94  FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--F 149
            KV V+GA G +G  +A  +    +   + + D+ +   +G A D+   ++P    D   
Sbjct: 1   MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE-SSPIHGFDTRV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
           TG  +     +  +V +I AG+PR PGM+RDDL   N  IV  + E   +  PD+ I ++
Sbjct: 59  TGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +NP++    +A E       +   ++ G+   LD  R  +F+A++ ++ + DV   ++GG
Sbjct: 118 ANPLDVMTYVAYEASG----FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173
Query: 269 HAGITILPLLSKT----MPSVSFTDE-EVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
           H G T++PL   T    +P     D+  + ++  R + AG E+V+        T +    
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-----GTSAWYAP 227
Query: 324 AARFVESSLRALDGDGDVYECVFV---ESNLTELPFFASRVKLGRNGVESLISSDLQ 377
            A   E +   L  +  +  C      E  L +L F    VKLG  GVE +I  DL 
Sbjct: 228 GAAAAEMTEAILKDNKRILPCAAYCDGEYGLDDL-FIGVPVKLGAGGVEEVIEVDLD 283

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 33/309 (10%)
Query: 88  LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQV 146
           + P+A     VL  +G IG  +A LI    L   +    V N+  G A D SH N  +  
Sbjct: 1   MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVVMFDIVKNMPHGKALDTSHTNVMAYS 57
Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNC 201
                       LK  +VV++ AG  + PG       RDDL  +N  I+  +   + +NC
Sbjct: 58  NCKVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNC 117
Query: 202 PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLID 260
           P+AFI +++NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   D
Sbjct: 118 PNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRD 173
Query: 261 VDVPVVGGHAGITIL----------PLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
           V+  +VG H    +L          P L + + +   TD+E+  +  R  N   E+V   
Sbjct: 174 VNAHIVGAHGNKMVLLKRYITVGGIP-LQEFINNKKITDQELDAIFDRTINTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELPFFASR-VKLGRNGV 368
           A   S  ++ A A     ES +R L     V  C   +E        FA   + +G NGV
Sbjct: 233 A---SPYVAPAAAIIEMAESYIRDLR---KVLICSTLLEGQYGHKDIFAGTPLVIGGNGV 286
Query: 369 ESLISSDLQ 377
           E +I   L 
Sbjct: 287 EQVIELQLN 295

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
           K++++GA G +G   A  +    L   + L  V  V +G A DL    +P +  D   TG
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
               A      +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +++N
Sbjct: 62  TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           P+++   +AAEV    G    + +     LD  R  TF+A +  + + DV   ++GGH  
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
             + LP  S    +P   F   + +  +  R +  G E+V      GSA  + A A A+ 
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
           VE+ L+       V   +  +  L ++ +F   V LG  GVE ++   L    E E   L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
            A    ++A+++
Sbjct: 293 NASAKAVRATLD 304

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 20/313 (6%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
           K++++GA G +G   A  +    L   + L  V  V +G A DL    +P +  D   TG
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
               A      +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +++N
Sbjct: 62  TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           P+++   +AAEV    G    + +     LD  R  TF+A +  + + DV   ++GGH G
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-G 176
Query: 272 ITILPL-----LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
             ++PL     +S    S     + +  +  R +  G E+V      GSA  + A A A+
Sbjct: 177 DEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQ 235
Query: 327 FVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386
            VE+ L+       V   +  +  L ++ +F   V LG  GVE ++   L    E E   
Sbjct: 236 MVEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMAL 291
Query: 387 LEALKPELKASIE 399
           L A    ++A+++
Sbjct: 292 LNASAKAVRATLD 304

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
           K++++GA G +G   A  +    L   + L  V  V +G A DL    +P +  D   TG
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
               A      +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +++N
Sbjct: 62  TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           P+++   +AAEV    G    + +     LD  R  TF+A +  + + DV   ++GGH  
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
             + LP  S    +P   F   + +  +  R +  G E+V      GSA  + A A A+ 
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
           VE+ L+       V   +  +  L ++ +F   V LG  GVE ++   L    E E   L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
            A    ++A+++
Sbjct: 293 NASAKAVRATLD 304

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
           K++++GA G +G   A  +    L   + L  V  V +G A DL    +P +  D   TG
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
               A      +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +++N
Sbjct: 62  TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           P+++   +AAEV    G    + +     LD  R  TF+A +  + + DV   ++GGH  
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
             + LP  S    +P   F   + +  +  R +  G E+V      GSA  + A A A+ 
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
           VE+ L+       V   +  +  L ++ +F   V LG  GVE ++   L    E E   L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
            A    ++A+++
Sbjct: 293 NASAKAVRATLD 304

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYD--VMNVKGVAADLSHCNTPSQVLDFTGP 152
           K+ ++GAAG IG  +A    M  L   L LYD   + ++GVA ++ HC      L FT  
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT-- 67
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDA-FIHIISN 211
            ++  AL     +V   G PRK GMTR+DL   NA I   L + +   CPD   + II N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 212 PVNST--VPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL-IDVDVPVVGG 268
           P + T  V +    LK      P ++  +  LD  R  + +A+   +K  +  +    GG
Sbjct: 128 PADITGLVTLIYSGLK------PSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGG 181
Query: 269 H----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKA 311
           H          A +   P L+  + +   T+E+  +L  R+   G  +++ + 
Sbjct: 182 HGEQMAVFASTAKVNGTP-LTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG 233

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 143/326 (43%), Gaps = 43/326 (13%)
Query: 88  LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
           + P+A     VL  +G IG  +A LI    L   + L+D++     G A D SH N  + 
Sbjct: 1   MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
                        L G +VV++ AG  + PG       RDDL  +N  I+  +   +  N
Sbjct: 57  SNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
           CP+AFI +++NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
           DV+  +VG H    +L     T+  +           +D E+  +  R  N   E+V   
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLG 364
           A   S  ++ A A     ES L+ L       + V + S L E        F  + V LG
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLG 282
Query: 365 RNGVESLISSDLQGLTEYEQKALEAL 390
            NGVE +I  +LQ  +E + K  EA+
Sbjct: 283 ANGVEQVI--ELQLNSEEKAKFDEAI 306

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 139/316 (43%), Gaps = 40/316 (12%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEEL 155
           VL  +G IG  +A LI    L   + L+D++     G A D SH N  +           
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT 65
Query: 156 ASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
              L G +VV++ AG  + PG       RDDL  +N  I+  +   +  NCP+AFI +++
Sbjct: 66  YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   DV+  +VG H
Sbjct: 126 NPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH 181
Query: 270 AGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
               +L     T+  +           +D E+  +  R  N   E+V   A   S  ++ 
Sbjct: 182 GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA---SPYVAP 238
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLGRNGVESLISS 374
           A A     ES L+ L       + V + S L E        F  + V LG NGVE +I  
Sbjct: 239 AAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVI-- 289
Query: 375 DLQGLTEYEQKALEAL 390
           +LQ  +E + K  EA+
Sbjct: 290 ELQLNSEEKAKFDEAI 305

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 139/316 (43%), Gaps = 40/316 (12%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEEL 155
           VL  +G IG  +A LI    L   + L+D++     G A D SH N  +           
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT 65
Query: 156 ASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
              L G +VV++ AG  + PG       RDDL  +N  I+  +   +  NCP+AFI +++
Sbjct: 66  YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   DV+  +VG H
Sbjct: 126 NPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH 181
Query: 270 AGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
               +L     T+  +           +D E+  +  R  N   E+V   A   S  ++ 
Sbjct: 182 GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA---SPYVAP 238
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLGRNGVESLISS 374
           A A     ES L+ L       + V + S L E        F  + V LG NGVE +I  
Sbjct: 239 AAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVI-- 289
Query: 375 DLQGLTEYEQKALEAL 390
           +LQ  +E + K  EA+
Sbjct: 290 ELQLNSEEKAKFDEAI 305

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 143/326 (43%), Gaps = 43/326 (13%)
Query: 88  LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
           + P+A     VL  +G IG  +A LI    L   + L+D++     G A D SH N  + 
Sbjct: 1   MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
                        L G +VV++ AG  + PG       RDDL  +N  I+  +   +  N
Sbjct: 57  SNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
           CP+AFI +++NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
           DV+  +VG H    +L     T+  +           +D E+  +  R  N   E+V   
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLG 364
           A   S  ++ A A     ES L+ L       + V + S L E        F  + V LG
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLG 282
Query: 365 RNGVESLISSDLQGLTEYEQKALEAL 390
            NGVE +I  +LQ  +E + K  EA+
Sbjct: 283 ANGVEQVI--ELQLNSEEKAKFDEAI 306

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 147/321 (45%), Gaps = 50/321 (15%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA 156
           VL  +G IG  +A LI    L   +    V N+ +G A D SH N    V+ ++  +   
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVVMFDVVKNMPQGKALDTSHSN----VMAYSNCKVTG 62
Query: 157 SA----LKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
           S     LKG +VV++ AG  + PG       RDDL  +N  I+  +   + + CP+AFI 
Sbjct: 63  SNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFII 122
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPK-KLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
           +++NPV+  V +  E     GV  PK K+ G+   LD  R   +++QK N+   DV+  +
Sbjct: 123 VVTNPVDVMVQLLFE---HSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALI 177
Query: 266 VGGHAGITIL----------PLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
           VG H    +L          P L + + +   TDEEV  +  R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIP-LQEFINNKKITDEEVEGIFDRTVNTALEIVNLLA---S 233
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRV------KLGRNGVE 369
             ++ A A     ES L+ +       + V V S L E  +  S +       +G  GVE
Sbjct: 234 PYVAPAAAIIEMAESYLKDI-------KKVLVCSTLLEGQYGHSNIFGGTPLVIGGTGVE 286
Query: 370 SLISSDLQGLTEYEQKALEAL 390
            +I  +LQ   E + K  EA+
Sbjct: 287 QVI--ELQLNAEEKTKFDEAV 305

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 139/322 (43%), Gaps = 35/322 (10%)
Query: 88  LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
           + P+A     VL  +G IG  +A LI    L   + L+D++     G A D SH N  + 
Sbjct: 1   MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
                        L G +VV++ AG  + PG       R DL  +N  I+  +   +  N
Sbjct: 57  SNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
           CP+AFI +++NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
           DV+  +VG H    +L     T+  +           +D E+  +  R  N   E+V   
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELPFFASR-VKLGRNGV 368
           A   S  ++ A A     ES L+ L     V  C   +E        F    V LG NGV
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGV 286
Query: 369 ESLISSDLQGLTEYEQKALEAL 390
           E +I  +LQ  +E + K  EA+
Sbjct: 287 EQVI--ELQLNSEEKAKFDEAI 306

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 35/311 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
           K+AV+G+ G IG  +A ++    L   + L+D+     +G A D++H      + S+V+ 
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVI- 62
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             G ++ A  + G +VV+I A +P +P   R +L   NA I+ ++ E V   CP+AF+  
Sbjct: 63  --GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           I+NP++  V   +   K  G+   K       LD  R  TF+AQ   +   DV   V+GG
Sbjct: 120 ITNPLDVMV---SHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176
Query: 269 HAGITILPLLSKT----MPSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
           H G  ++P  S      +P  SF      T E++ ++    + A  EV +     G+A  
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD-NLKTGTAYF 234
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISSDL 376
           + A AA +  E+ L+       V  C    SN   +   +      +G+NGVE ++  D 
Sbjct: 235 APAAAAVKMAEAYLKDKKA---VVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILELD- 290
Query: 377 QGLTEYEQKAL 387
             LT  EQK L
Sbjct: 291 --LTPLEQKLL 299

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 31/320 (9%)
Query: 88  LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
           + P+A     VL  +G IG  +A LI    L   + L+D++     G A D SH N  + 
Sbjct: 1   MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
                        L G +VV++ AG  + PG       RDDL  +N  I+  +   +  N
Sbjct: 57  SNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
           CP+AFI +++NPV+  V    ++L Q       K+ G+   LD  R   +++QK N+   
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
           DV+  +VG H    +L     T+  +           +D E+  +  R  N   E+V   
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
           A    A  +     A      L+ +     + E  +  S++    F  + V LG NGVE 
Sbjct: 233 AAPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 371 LISSDLQGLTEYEQKALEAL 390
           +I  +LQ  +E + K  EA+
Sbjct: 289 VI--ELQLNSEEKAKFDEAI 306

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 35/311 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
           K+AV+G+ G IG  +A ++    L   + L+D+     +G A D++H      + S+V+ 
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVI- 62
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             G  + A  + G +VV+I A +P +P   R +L   NA I+ ++ E V   CP+AF+  
Sbjct: 63  --GTNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           I+NP++  V   +   K  G+   K       LD  R  TF+AQ   +   DV   V+GG
Sbjct: 120 ITNPLDVMV---SHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176
Query: 269 HAGITILPLLSKT----MPSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
           H G  ++P  S      +P  SF      T E++ ++    + A  EV +     G+A  
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD-NLKTGTAYF 234
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISSDL 376
           + A AA +  E+ L+       V  C    SN   +   +      +G+NGVE ++  D 
Sbjct: 235 APAAAAVKMAEAYLKDKKA---VVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILELD- 290
Query: 377 QGLTEYEQKAL 387
             LT  EQK L
Sbjct: 291 --LTPLEQKLL 299

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 32/257 (12%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           KVA++GA G +G   A  + +    + L L DV   K  G A D++H       L F G 
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             L     S +K  +V+V+ AG  RKPG TR DL   N  I K + + +        I +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +SNPV+    I   + K  G+   K +   T LD +R    +++K  + + +V   ++G 
Sbjct: 122 VSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGE 178
Query: 269 HAGITILPLLSKTM------------PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
           H G + LPL S T             P  +FT+E+   +   ++ AG  +++ K   G+ 
Sbjct: 179 H-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GAT 234
Query: 317 TLSMAYAAARFVESSLR 333
              +A +    VE+ L+
Sbjct: 235 YYGIAVSINTIVETLLK 251

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 25/238 (10%)
Query: 92  ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDV----MNVKGVAADLSHCNT 142
           ++ KVAV GAAG IG  L  LI    L+       L L D+      + GV A+L  C  
Sbjct: 23  SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAF 82
Query: 143 P--SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD- 199
           P   +V+    P     A  GV + ++    PRK GM R DL  +NA I K   EA+A  
Sbjct: 83  PLLDKVVVTADPR---VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAV 139
Query: 200 NCPDAFIHIISNPVNSTVPIAAEVLKQ-KGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL 258
              D  + ++ NP N+   I   +LK  +G  +P+ +  +T LD  RA + +A+K  + +
Sbjct: 140 AASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPV 196
Query: 259 IDVDVPVVGGHAGITILP-----LLSKTMPSVSFTDEEVGDLTVR-IQNAGTEVVEAK 310
             V   ++ G+   T +P     ++  T    +  D+ + D  V+ ++  G E+++ +
Sbjct: 197 SQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR 254

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
           +L   G +G   A  + +  +   + + D+     KG A DLS+       L FT P+++
Sbjct: 13  ILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSPKKI 66
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            SA     K  ++VVI AG P+KPG TR DL N N  I+K++V+ + D+  +    + +N
Sbjct: 67  YSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PV+    +     K  G    + +   T+LD  R    +A+  N+    V   ++G H G
Sbjct: 127 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-G 182
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
            T  P+ S             K  P +   ++++  +   +++A  E+++ K   G+   
Sbjct: 183 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GATFY 237
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
            +A A AR  ++ L   D +  +   V+++    L ++ +  +   + RNG+++++    
Sbjct: 238 GIATALARISKAILN--DENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-- 292
Query: 377 QGLTEYEQKALEALKPELK 395
             LT++E+++++    +LK
Sbjct: 293 -PLTDHEEESMQKSASQLK 310

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 38/316 (12%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
           K+A++G+ G IG  +  L  +  L   + L+DV+    +G A D S   + +        
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 153 EELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
                 + G +VV+I AG+ + PG      +R+DL   NA I++ + + V   CP AF+ 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFG--VTTLDVVRANTFVAQKKNLKLIDVDVPV 265
           +++NP++  V    E     G+  PK +       LD  R   F+A +  +   D+   V
Sbjct: 128 VVTNPLDCMVKCFHEA---SGL--PKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 266 VGGHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
           +G H G  +LPL          L + +     T+ ++ ++  R + AG E+V    G GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYEC-VFV--ESNLTELPFFASRVKLGRNGVESLI 372
           A  + A +A    ++ L+    +  V  C V+   E  L ++ F      +G  G+E +I
Sbjct: 241 AYYAPALSAITMAQAFLK---DEKRVLPCSVYCQGEYGLHDM-FIGLPAVIGGGGIEQVI 296
Query: 373 SSDLQGLTEYEQKALE 388
             +   LT  EQ+   
Sbjct: 297 ELE---LTHEEQECFR 309

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 38/316 (12%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
           K+A++G+ G IG  +  L  +  L   + L+DV+    +G A D S   + +        
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 153 EELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
                 + G +VV+I AG+ + PG      +R+DL   NA I++ + + V   CP AF+ 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFG--VTTLDVVRANTFVAQKKNLKLIDVDVPV 265
           +++NP++  V    E     G+  PK +       LD  R   F+A +  +   D+   V
Sbjct: 128 VVTNPLDCMVKCFHEA---SGL--PKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 266 VGGHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
           +G H G  +LPL          L + +     T+ ++ ++  R + AG E+V    G GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYEC-VFV--ESNLTELPFFASRVKLGRNGVESLI 372
           A  + A +A    ++ L+    +  V  C V+   E  L ++ F      +G  G+E +I
Sbjct: 241 AYYAPALSAITMAQAFLK---DEKRVLPCSVYCQGEYGLHDM-FIGLPAVIGGGGIEQVI 296
Query: 373 SSDLQGLTEYEQKALE 388
             +   LT  EQ+   
Sbjct: 297 ELE---LTHEEQECFR 309

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
           +L   G +G   A  + +  +   + + D+     KG A DLS+       L FT P+++
Sbjct: 12  ILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSPKKI 65
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            SA     K  ++VVI AG P++PG TR DL N N  I+K++V+ + D+  +    + +N
Sbjct: 66  YSAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAAN 125
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PV+    +     K  G    + +   T+LD  R    +A+  N+    V   ++G H G
Sbjct: 126 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-G 181
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
            T  P+ S             K  P +   ++++  +   +++A  E+++ K   G+   
Sbjct: 182 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GATFY 236
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
            +A A AR  ++ L   D +  +   V+++    + +L +  +   + RNG+++++    
Sbjct: 237 GIATALARISKAILN--DENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-- 291
Query: 377 QGLTEYEQKALEALKPELK 395
             LT++E+++++    +LK
Sbjct: 292 -PLTDHEEESMQKSASQLK 309

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 96  VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQV-LDFTGPE 153
           + +LGA G +G   A+++ M      L +       +G A DL+H      V +  +G  
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
                ++G ++V++ AG+ RKPGMTR+ L   NAN +  L E +     DA + I +NPV
Sbjct: 61  SYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119
Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           ++       V+ +K  +  +++ G +  LD  R   +++QK  +    V+  V+G H G 
Sbjct: 120 DAM----TYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQ 174
Query: 273 TILPLLSKTMPSVS----------FTDEEVGDLTVRIQNAGTEVVEAKA 311
            + P+     P +S           + EE+ ++     NAG ++ E + 
Sbjct: 175 KMFPV-----PRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRG 218

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 42/319 (13%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
           +L   G +G   A  + +  +   + + D+     KG A DL         L FT P+++
Sbjct: 13  ILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDA------LPFTSPKKI 66
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            SA     K  ++VVI AG P+KPG TR DL N N  I+K++V+ + D+  +    + +N
Sbjct: 67  YSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
           PV+    +     K  G    + +   T+LD  R    +A+  N+    V   ++G H G
Sbjct: 127 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-G 182
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
            T  P+ S             K  P +   ++++  +   ++N   E+++ K   G+   
Sbjct: 183 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRNKAYEIIKLK---GATFY 237
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
            +A A AR  ++ L   D +  +   V+++    L ++ +  +   + RNG+++++    
Sbjct: 238 GIATALARISKAILN--DENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-- 292
Query: 377 QGLTEYEQKALEALKPELK 395
             LT++E+++++    +LK
Sbjct: 293 -PLTDHEEESMQKSASQLK 310

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
           G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      SNPV+    + 
Sbjct: 70  GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
              L + G    +++ G    LD  R    ++++ +  + +V+  ++G H G   +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           K     T P  S  ++E  +GDL    Q +  +V+E K   G+     A   A  VE+ L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 237
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
                 G+V    V +E     E   F   V+LG NGVE ++  DL    +YEQ  +   
Sbjct: 238 HDT---GEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 291
Query: 391 KPELKASIEK 400
             +L    +K
Sbjct: 292 AEKLSDQYDK 301

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
           G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      SNPV+    + 
Sbjct: 71  GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
              L + G    +++ G    LD  R    ++++ +  + +V+  ++G H G   +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           K     T P  S  ++E  +GDL    Q +  +V+E K   G+     A   A  VE+ L
Sbjct: 186 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 238
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
                 G+V    V +E     E   F   V+LG NGVE ++  DL    +YEQ  +   
Sbjct: 239 HDT---GEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 292
Query: 391 KPELKASIEK 400
             +L    +K
Sbjct: 293 AEKLSDQYDK 302

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91  QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
           Q   KVA++G+ G IG  +  L  +  L   + LYDV+    +G A DLSH  +     +
Sbjct: 7   QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 64
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
                    +AL G + V++ AG+ + PG      +R+DL   N+ I++ + + +   CP
Sbjct: 65  SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
             FI +++NP++  V +  E     GV           LD  R   +VA   ++   DV 
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 263 VPVVGGHAGITILPLL 278
             V+G H G  ++PL+
Sbjct: 182 ATVIGTH-GDCMVPLV 196

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
           G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      SNPV+    + 
Sbjct: 71  GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
              L + G    +++ G    LD  R    ++++ +  + +V+  ++G H G   +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 280 KTMPSVSFTDEEV-GD----LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
           K   SV  TD E  GD    L   +Q +  +V+E K   G+     A   A  VE+ L  
Sbjct: 186 KV--SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHD 240
Query: 335 LDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
               G+V    V +E     E   F   V LG NGVE ++  DL    +YEQ  +     
Sbjct: 241 T---GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLD---DYEQDLMADAAE 294
Query: 393 ELKASIEK 400
           +L    +K
Sbjct: 295 KLSDQYDK 302

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91  QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
           Q   KVA++G+ G IG  +  L  +  L   + LYDV+    +G A DLSH  +     +
Sbjct: 5   QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 62
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
                    +AL G + V++ AG+ + PG      +R+DL   N+ I++ + + +   CP
Sbjct: 63  SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 122
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
             FI +++NP++  V +  E     GV           LD  R   +VA   ++   DV 
Sbjct: 123 KTFIIVVTNPLDCMVKVMCEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 263 VPVVGGHAGITILPLL 278
             V+G H G  ++PL+
Sbjct: 180 ATVIGTH-GDCMVPLV 194

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
           G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      SNPV+    + 
Sbjct: 70  GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
              L + G    +++ G    LD  R    ++++ +  + +V+  ++G H G   +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 KTMPSVSFTDEEV-GD----LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
           K   SV  TD E  GD    L   +Q +  +V+E K   G+     A   A  VE+ L  
Sbjct: 185 KV--SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHD 239
Query: 335 LDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
               G+V    V +E     E   F   V LG NGVE ++  DL    +YEQ  +     
Sbjct: 240 T---GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLD---DYEQDLMADAAE 293
Query: 393 ELKASIEK 400
           +L    +K
Sbjct: 294 KLSDQYDK 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
           G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      SNPV+    + 
Sbjct: 70  GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
              L + G    +++ G    LD  R    ++++ +  + +V+  ++G H G   +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           K     T P  S  ++E  +GDL    Q +  +V+E K   G+     A   A  VE+ L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 237
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
                 G V    V +E     E   F   V+LG NGVE ++  DL    +YEQ  +   
Sbjct: 238 HDT---GRVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 291
Query: 391 KPELKASIEK 400
             +L    +K
Sbjct: 292 AEKLSDQYDK 301

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91  QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
           Q   KVA++G+ G IG  +  L  +  L   + LYDV+    +G A DLSH  +     +
Sbjct: 7   QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 64
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
                    +AL G + V++ AG+ + PG      +R+DL   N+ I++ + + +   CP
Sbjct: 65  SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
             FI +++NP++  V +  E     GV           LD  R   +VA   ++   DV 
Sbjct: 125 KTFIIVVTNPLDCMVKVMXEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 263 VPVVGGHAGITILPLL 278
             V+G H G  ++PL+
Sbjct: 182 ATVIGTH-GDCMVPLV 196

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 28/248 (11%)
Query: 98  VLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGPEEL 155
           VL   G +G   A  +    +     + DV+    KG A DL           FT P+++
Sbjct: 9   VLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA------FTAPKKI 62
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
            S      K  ++VVI AG P+KPG +R DL N N NI+ ++V+ V D+  D    + +N
Sbjct: 63  YSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH-- 269
           PV+    +     K  G    + +   T+LD  R    + ++ N+    VD  ++G H  
Sbjct: 123 PVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD 179
Query: 270 ---AGITILPLLSKTMPSVS----FTDEEVGDLTVRIQNAGTEVVEAKA----GAGSATL 318
              A  +   + ++ +  V+     +D+++  L   ++N   +++  K     G G+A +
Sbjct: 180 SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALM 239
Query: 319 SMAYAAAR 326
            ++ A  R
Sbjct: 240 RISKAILR 247

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCN--TPSQVLDFT 150
           KV ++G  G +G   A  +    +V  L + D+    V+G   DL H    +P+ V    
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G     S     ++VVI AG  +KPG TR DL + N  I K++V  V  +  D    + +
Sbjct: 67  GE---YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPV+    +A    K  G+   + +   T LD  R    +++  ++    VD  ++G H 
Sbjct: 124 NPVDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH- 179
Query: 271 GITILPLLSKT----MPSVSFTDE------EVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
           G T LP+ S       P  +  ++      ++  + V+ ++A  ++++AK   G+    +
Sbjct: 180 GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGV 236
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLG------RNGVESLI 372
           A   AR  E+  R  D        V   S L E  +    V +G      RNG+ +++
Sbjct: 237 AMGLARITEAIFRNED-------AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVV 287

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCN--TPSQVLDFT 150
           KV ++G  G +G   A  +    +V  L + D+    V+G   DL H    +P+ V    
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G     S     ++VVI AG  +KPG TR DL + N  I K++V  V  +  D    + +
Sbjct: 67  GE---YSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPV+    +A    K  G+   + +   T LD  R    +++  ++    VD  ++G H 
Sbjct: 124 NPVDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH- 179
Query: 271 GITILPLLSKT----MPSVSFTDE------EVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
           G T LP+ S       P  +  ++      ++  + V+ ++A  ++++AK   G+    +
Sbjct: 180 GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGV 236
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLG------RNGVESLI 372
           A   AR  E+  R  D        V   S L E  +    V +G      RNG+ +++
Sbjct: 237 AMGLARITEAIFRNED-------AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVV 287

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNT--PSQVLDFT 150
           K+AV+GA G +G  LA       +   + L D+    V+    D+ H ++  P+  +D +
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
              E+    +  ++VVI AG  +KPG +R +L     NI+K ++  +    P+A   +I+
Sbjct: 68  DDPEIC---RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+    IA  V ++       ++FG  T LD  R    +AQ+  + + +V   + G H
Sbjct: 125 NPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH 180
Query: 270 AGITILPLL-SKTMPSVSFTD------------EEVGDLTVRIQNAGTEVVEAKAGAGSA 316
            G + +PL  S T+  V  +D            ++  ++   ++NA  +++  K   G+ 
Sbjct: 181 -GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---GAT 236
Query: 317 TLSMAYAAARFVESSLR 333
             ++  +    +E+ L 
Sbjct: 237 NYAIGMSGVDIIEAVLH 253

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 101 AAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELAS 157
            AG +G   A    ++  V  + L D+      G A DL+H      +     G  +  S
Sbjct: 7   GAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-S 65
Query: 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
            LKG  ++V+ AG+ RKPGMTR DL + NA I+K + + + +N P++ I +++NP++
Sbjct: 66  LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 26/261 (9%)
Query: 89  QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
           +P++  K+ V+G  G +G   A+ I M  L   + L DVM   +KG   DL H     +T
Sbjct: 17  EPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHT 75
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
              V   +G +   SA  G  +VVI AG  ++ G +R +L   N NI K ++  +  + P
Sbjct: 76  AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 130
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
           D  I ++SNPV+    +A    K  G+   + +     LD  R    + ++  +      
Sbjct: 131 DCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCH 187
Query: 263 VPVVGGH--------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
             V+G H        +G+ +  +    +   +   ++   L   + ++  EV++ K   G
Sbjct: 188 GWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---G 244
Query: 315 SATLSMAYAAARFVESSLRAL 335
             + ++  + A   E+ ++ L
Sbjct: 245 YTSWAIGLSVADLAETIMKNL 265

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 26/261 (9%)
Query: 89  QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
           +P++  K+ V+G  G +G   A+ I M  L   + L DVM   +KG   DL H     +T
Sbjct: 16  EPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHT 74
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
              V   +G +   SA  G  +VVI AG  ++ G +R +L   N NI K ++  +  + P
Sbjct: 75  AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 129
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
           D  I ++SNPV+    +A    K  G+   + +     LD  R    + ++  +      
Sbjct: 130 DCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCH 186
Query: 263 VPVVGGH--------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
             V+G H        +G+ +  +    +   +   ++   L   + ++  EV++ K   G
Sbjct: 187 GWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---G 243
Query: 315 SATLSMAYAAARFVESSLRAL 335
             + ++  + A   E+ ++ L
Sbjct: 244 YTSWAIGLSVADLAETIMKNL 264

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 105/251 (41%), Gaps = 35/251 (13%)
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  ELA A     VV++ AG  +KPG +R DL   NA+I + LV  +    PDA + + S
Sbjct: 61  GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPV+    +A ++   + V     +   T LD  R    +AQ   +        V+G H 
Sbjct: 117 NPVDLLTDLATQLAPGQPV-----IGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHG 171
Query: 271 GITILPLLSKT---MPSVSF-------TDEEV-GDLTVRIQNAGTEVVEAKAGAGSATLS 319
              +L   S     MP   F        +E+V   +    +NA   ++E K    +    
Sbjct: 172 DSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKR---ATYYG 228
Query: 320 MAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS--RVKLGRNGVESLISSDLQ 377
           +  A AR  E+ LR      D    + V +   E     S  RV +GR GV S +   L 
Sbjct: 229 IGAALARITEAVLR------DRRAVLTVSAPTPEYGVSLSLPRV-VGRQGVLSTLHPKLT 281
Query: 378 GLTEYEQKALE 388
           G    EQ+ LE
Sbjct: 282 G---DEQQKLE 289

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 143/350 (40%), Gaps = 41/350 (11%)
Query: 67  SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
           +AL+          E  PQ         K+ V+G  G +G   A+ I M  L   L L D
Sbjct: 1   AALKDQLIHNLLKEEHVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           VM   +KG   DL H      TP  V   +G +   +A     +V+I AG  ++ G +R 
Sbjct: 52  VMEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYSVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           +L   N NI K ++  V    P   + ++SNPV+    +A ++    G    + +     
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
           LD  R    + ++  +  +     ++G H        +G+ +  +  KT+     TD   
Sbjct: 164 LDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           E+   +  ++ ++  EV++ K   G  T ++  + A   ES ++ L     +   +    
Sbjct: 224 EQWKQVHKQVVDSAYEVIKLK---GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
            + E  F +    LG+NG+  ++   L    E   K     L  ++ EL+
Sbjct: 281 GIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQ 330

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 91  QASFKVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVMN----VKGVAADLSHCN 141
           +A  +VAV GAAG IG  L   I    ++       L L ++      ++GV  +L  C 
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
            P  +      ++   A K  +  ++    PRK GM R DL  +N  I      A+A+  
Sbjct: 62  FPL-LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             D  + ++ NP N+   IA    K     +P+    +T LD  RA   +A+K    +  
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
           +    V G+   T+ P L        P++   D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 91  QASFKVAVLGAAGGIGQPL-------ALLIKMSPLV-SALHLYDVMN-VKGVAADLSHCN 141
           +A  +VAV GAAG IG  L        +L K  P++   L +   M  ++GV  +L  C 
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
            P  +      ++   A K  +  ++    PRK GM R DL  +N  I      A+A+  
Sbjct: 62  FPL-LAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             D  + ++ NP N+   IA    K     +P+    +T LD  RA   +A+K    +  
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
           +    V G+   T+ P L        P++   D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 67  SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
           + L+          EQ PQ         K+ V+G  G +G   A+ I M  L   L L D
Sbjct: 1   ATLKDQLIYNLLKEEQTPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           V+   +KG   DL H      TP  V   +G +   +A     +V+I AG  ++ G +R 
Sbjct: 52  VIEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYNVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           +L   N NI K ++  V    P+  + I+SNPV+    +A ++    G    + +     
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
           LD  R    + ++  +  +     V+G H        +G+ +  +  KT+     TD   
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           E+  ++  ++  +  EV++ K   G  + ++  + A   ES ++ L     V   +    
Sbjct: 224 EQWKEVHKQVVESAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
            + +  F +    LG+NG+  L+   L    E   K     L  ++ EL+
Sbjct: 281 GIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ 330

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 67  SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
           + L+          EQ PQ         K+ V+G  G +G   A+ I M  L   L L D
Sbjct: 1   ATLKDQLIYNLLKEEQTPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
           V+   +KG   DL H      TP  V   +G +   +A     +V+I AG  ++ G +R 
Sbjct: 52  VIEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYNVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           +L   N NI K ++  V    P+  + I+SNPV+    +A ++    G    + +     
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
           LD  R    + ++  +  +     V+G H        +G+ +  +  KT+     TD   
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           E+  ++  ++  +  EV++ K   G  + ++  + A   ES ++ L     V   +    
Sbjct: 224 EQWKEVHKQVVESAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
            + +  F +    LG+NG+  L+   L    E   K     L  ++ EL+
Sbjct: 281 GIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ 330

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 67  SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
           +AL+          EQ PQ         K+ V+G  G +G   A+ I M  L   L L D
Sbjct: 2   AALKDQLIVNLLKEEQVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 52
Query: 127 VM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVN----VVVIPAGVPRKPGMTRD 180
           V+   +KG   DL H +     L    P+ ++S    V     +V+I AG  ++ G +R 
Sbjct: 53  VIEDKLKGEMMDLQHGS-----LFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRL 107
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           +L   N NI K ++  V    P   + I+SNPV+    +A ++    G    + +     
Sbjct: 108 NLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 164
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
           LD  R    + ++  +  +     V+G H        +G+ +  +  K++     TD   
Sbjct: 165 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADK 224
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           E+  D+  ++ ++  EV++ K   G  + ++  + A   ES ++ L     +   +    
Sbjct: 225 EQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLY 281
Query: 350 NLTELPFFASRVKLGRNGVESLISSDL 376
            + E  F +    LG+NG+  ++   L
Sbjct: 282 GIKEDVFLSVPCILGQNGISDVVKVTL 308

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 91  QASFKVAVLGAAGGIGQPL-------ALLIKMSPLVSAL--HLYDVMNVKGVAADLSHCN 141
           +A  +VAV GAAG IG  L        +L K  P++  L         ++GV  +L  C 
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
            P  +      ++   A K  +  ++    PRK GM R DL  +N  I      A+A+  
Sbjct: 62  FPL-LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             D  + ++ NP N+   IA    K     +P+    +T LD  RA   +A+K    +  
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
           +    V G+   T+ P L        P++   D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 67  SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
           +AL+          EQ PQ         K+ V+G  G +G   A+ I M  L   L L D
Sbjct: 1   AALKDQLIVNLLKEEQVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVN----VVVIPAGVPRKPGMTRD 180
           V+   +KG   DL H +     L    P+ ++S    V     +V+I AG  ++ G +R 
Sbjct: 52  VIEDKLKGEMMDLQHGS-----LFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
           +L   N NI K ++  V    P   + I+SNPV+    +A ++    G    + +     
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
           LD  R    + ++  +  +     V+G H        +G+ +  +  K++     TD   
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           E+  D+  ++ ++  EV++ K   G  + ++  + A   ES ++ L     +   +    
Sbjct: 224 EQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDL 376
            + E  F +    LG+NG+  ++   L
Sbjct: 281 GIKEDVFLSVPCILGQNGISDVVKVTL 307

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 91  QASFKVAVLGAAGGIGQPL-------ALLIKMSPLV-SALHLYDVMN-VKGVAADLSHCN 141
           +A  +VAV GAAG IG  L        +L K  P++   L +   M  ++GV  +L  C 
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
            P  +      ++   A K  +  ++    PRK GM R DL  +N  I      A+A+  
Sbjct: 62  FPL-LAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             D  + ++ NP N+   IA    K     +P+    +T LD  RA   +A+K    +  
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 V-DVPVVGGHAGITILPLLSKTM---PSVSFTDEE 291
           +  + V G H+ I    L    +   P++   D E
Sbjct: 178 IRRMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 111/254 (43%), Gaps = 26/254 (10%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
           KVA++GA G +G   A  +    +   L + DV   K  G   DL+H     P  V    
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  E     K  ++V I AG  +KPG TR +L   N  I K +V  V  +  D    + +
Sbjct: 66  GTYE---DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR-----ANTFVAQKKNL--KLI---- 259
           NPV+    +     K  G+   + +   TTLD  R     +  F A  +N+   +I    
Sbjct: 123 NPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHG 179
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
           D ++P V  HA +  +P+      + ++  EE+  +   ++NA   ++E K   G+    
Sbjct: 180 DTELP-VWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYG 235
Query: 320 MAYAAARFVESSLR 333
           +A + AR  ++ L 
Sbjct: 236 VAMSLARITKAILH 249

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 111/254 (43%), Gaps = 26/254 (10%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
           KVA++GA G +G   A  +    +   L + DV   K  G   DL+H     P  V    
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  E     K  ++V I AG  +KPG TR +L   N  I K +V  V  +  D    + +
Sbjct: 66  GTYE---DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR-----ANTFVAQKKNL--KLI---- 259
           NPV+    +     K  G+   + +   TTLD  R     +  F A  +N+   +I    
Sbjct: 123 NPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHG 179
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
           D ++P V  HA +  +P+      + ++  EE+  +   ++NA   ++E K   G+    
Sbjct: 180 DTELP-VWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYG 235
Query: 320 MAYAAARFVESSLR 333
           +A + AR  ++ L 
Sbjct: 236 VAMSLARITKAILH 249

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 29/258 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQVLD 148
           K+ V+G  G +G   A+ I    L   L L DV+   +KG   DL H      TP  V D
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
                +  S      +VV+ AGV ++ G +R +L   N N+ K ++  +    PD  I +
Sbjct: 81  -----KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +SNPV+    +     K  G+   + +     LD  R    +A+K  +        ++G 
Sbjct: 136 VSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 269 HAGITILPLLSKTMPSVSFTD-----------EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           H   ++       +  VS  +           E   ++   +  +  EV++ K   G   
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTN 249
Query: 318 LSMAYAAARFVESSLRAL 335
            ++  + A  +ES L+ L
Sbjct: 250 WAIGLSVADLIESMLKNL 267

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 29/258 (11%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQVLD 148
           K+ V+G  G +G   A+ I    L   L L DV+   +KG   DL H      TP  V D
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
                +  S      +VV+ AGV ++ G +R +L   N N+ K ++  +    PD  I +
Sbjct: 81  -----KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +SNPV+    +     K  G+   + +     LD  R    +A+K  +        ++G 
Sbjct: 136 VSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 269 HAGITILPLLSKTMPSVSFTD-----------EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           H   ++       +  VS  +           E   ++   +  +  EV++ K   G   
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTN 249
Query: 318 LSMAYAAARFVESSLRAL 335
            ++  + A  +ES L+ L
Sbjct: 250 WAIGLSVADLIESMLKNL 267

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
           L+G   VV+ AGV ++PG TR  L + NA +   +V  V +  P+A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
           +A    +  G+  P ++ G  T LD  R    +A+   +    V   V+G H    +L  
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
            S     +P + F +        E+   +   ++ A   ++E K   G+    +    AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
            V + L
Sbjct: 238 LVRAIL 243

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
           L+G   VV+ AGV ++PG TR  L + NA +   +V  V +  P+A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
           +A    +  G+  P ++ G  T LD  R    +A+   +    V   V+G H    +L  
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
            S     +P + F +        E+   +   ++ A   ++E K   G+    +    AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
            V + L
Sbjct: 238 LVRAIL 243

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
           L+G   VV+ AGV ++PG TR  L + NA +   +V  V +  P+A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
           +A    +  G+  P ++ G  T LD  R    +A+   +    V   V+G H    +L  
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
            S     +P + F +        E+   +   ++ A   ++E K   G+    +    AR
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
            V + L
Sbjct: 238 LVRAIL 243

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 130/322 (40%), Gaps = 33/322 (10%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYD--VMNVKGVAADLSH----CNTPSQVLD 148
           K+ V+G  G +G   A+ I +  L   L L D     ++G A DL H     +TP  V  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF- 78
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             G +   SA     +V+I AG     G TR DL   N  I+K +V  V  N PD  I +
Sbjct: 79  --GKDYNVSA--NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIV 134
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           ++NPV+    +   V K  G    + +     LD  R    + +K  +        V+G 
Sbjct: 135 VTNPVDILTYV---VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGE 191
Query: 269 H--------AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           H        +G+ +  +  K++     TD   +   ++  ++   G EV++ K   G  +
Sbjct: 192 HGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTS 248
Query: 318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL- 376
            ++  +      S L+ L     V   V     + E  F +    LG +G+   +  ++ 
Sbjct: 249 WAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMT 308
Query: 377 ---QGLTEYEQKALEALKPELK 395
              +GL +     L  ++  L+
Sbjct: 309 AEEEGLLKKSADTLWNMQKNLE 330

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 29/299 (9%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNTPSQVLD 148
           K+ V+G  G +G   A+ I M  L   + L DVM   +KG   DL H      TP  V  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIV-- 78
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            +G +   +A     +VVI AG  ++ G +R +L   N NI K ++  +    P+  + +
Sbjct: 79  -SGKDYNVTA--NSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +SNPV+    +A ++    G    + +     LD  R    + ++  +  +     ++G 
Sbjct: 136 VSNPVDILTYVAWKI---SGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGE 192
Query: 269 H--------AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           H        +G+ +  +  K +     TD   E    +   + ++  EV++ K   G  +
Sbjct: 193 HGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---GYTS 249
Query: 318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL 376
            ++  + A   ES ++ L     +   +     + E  F +    LG+NG+  ++   L
Sbjct: 250 WAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKVTL 308

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
           L+G   VV+ AGV ++PG TR  L + NA +   +V  V +  P+A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
           +A  +    G+  P ++ G  T LD  R    +A+   +    V   V+G H    +L  
Sbjct: 125 VAYAL---SGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
            S     +P + F +        E+   +   ++ A   ++E K   G+    +    AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
            V + L
Sbjct: 238 LVRAIL 243

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
           +V V+GA G +G      +    +   + L D    K  G A D +H     P  V  + 
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  +     +  ++VVI AG  +KPG TR DL + N  I +++VE+V  +       + +
Sbjct: 67  GDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPV+    +     K  G+   + +   T LD  R    + +  ++   +V   ++G H 
Sbjct: 124 NPVD---ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH- 179
Query: 271 GITILPLLSKTMPSV--------SFTDEEVGDLT---VRIQNAGTEVVEAKAGAGSATLS 319
           G T LP+ S+    V        S  +E   DL    V +++A  +++E K   G+    
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYG 236
Query: 320 MAYAAARF-------------VESSLRALDGDGDVY 342
           +A   AR              V + L  L G+ DVY
Sbjct: 237 IAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY 272

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 24/296 (8%)
Query: 110 ALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI 167
           A+ I +  L   L + DVM   +KG   DL H +   +     G ++  S      VVV+
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKT-KIVGDKDY-SVTANSKVVVV 93
Query: 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQK 227
            AG  ++ G +R +L   N NI K ++  +    P+  + ++SNPV+    +A    K  
Sbjct: 94  TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WKLS 150
Query: 228 GVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSK-TMPSVS 286
           G    + +   T LD  R    + +K +L        +VG H G + +P+ S   +  VS
Sbjct: 151 GFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVNVAGVS 209
Query: 287 FT-----------DEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRAL 335
                         E    +   + +   EV++ K   G  + ++  + A  VES ++ +
Sbjct: 210 LQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVESIIKNM 266
Query: 336 DGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYE-QKALEAL 390
                V   V     + +  F +    LG +G+  +I   L+   E + QK+ E L
Sbjct: 267 HKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQLQKSAETL 322

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
           +V V+GA G +G      +    +   + L D    K  G A D +H     P  V  + 
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  +     +  ++VVI AG  +KPG TR DL + N  I +++VE+V  +       + +
Sbjct: 67  GDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPV+    +     K  G+   + +   T LD  R    + +  ++   +V   ++G H 
Sbjct: 124 NPVD---ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH- 179
Query: 271 GITILPLLSKTMPSV--------SFTDEEVGDLT---VRIQNAGTEVVEAKAGAGSATLS 319
           G T LP+ S+    V        S  +E   DL    V +++A  +++E K   G+    
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYG 236
Query: 320 MAYAAARF-------------VESSLRALDGDGDVY 342
           +A   AR              V + L  L G+ DVY
Sbjct: 237 IAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY 272

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ V+G  G +G   A+ I    L   L L DV+   +KG   DL H +   Q       
Sbjct: 23  KITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAN 81
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++  S      +VV+ AGV ++ G +R +L   N N+ K ++  +    P+  I ++SNP
Sbjct: 82  KDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNP 140
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--- 269
           V+    +A    K  G+   + +     LD  R    + +K  +        ++G H   
Sbjct: 141 VDILTYVA---WKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDS 197
Query: 270 -----AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
                +G+ +  ++ + +     TD   E   ++   +  +  EV++ K   G    ++ 
Sbjct: 198 SVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTNWAIG 254
Query: 322 YAAARFVESSLRAL 335
            + A  +ES L+ L
Sbjct: 255 LSVADLIESMLKNL 268

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 20/278 (7%)
Query: 113 IKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170
           I +  L   L L DVM   +KG A DL H +   +       ++  S      VVV+ AG
Sbjct: 39  ILLKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDY-SVTANSKVVVVTAG 97
Query: 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVY 230
             ++ G +R +L   N NI K ++  +    P+  + ++SNPV+    +A    K  G+ 
Sbjct: 98  ARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSGLP 154
Query: 231 DPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTM 282
             + +   T LD  R    + +K  +   +    V+G H        +G+ +  +  + +
Sbjct: 155 RNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQGL 214
Query: 283 PSVSFTDEEVGDLTV---RIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDG 339
                TD++  D       + ++  EV++ K   G  + ++  +AA   +S L+ L    
Sbjct: 215 NPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSILKNLRKCH 271
Query: 340 DVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQ 377
            V   V     + E  F +    LG +G+  ++   L+
Sbjct: 272 PVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLK 309

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 172 PRKPGMTRDDLFNINANIVKTLVEAV-ADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVY 230
           PR PGM R DL +IN  I     +A+ A   P+  + ++ NP N+   I    LK     
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 231 DPKKLFGVTTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGITILPLLSKTMPSVSFTD 289
            PK    +T LD  RA   +A K  +    V +V + G H+   +   L+  +  +  T 
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVT- 244
Query: 290 EEVGDLTVRIQNAGTEVVEAKAG 312
            EV      +++  T +V+ + G
Sbjct: 245 -EVIRDRKWLEDEFTNMVQTRGG 266

>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 89  QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
           +P++  K+ V+G    +G   A+ + M  L   + L DVM   +KG   DL H     +T
Sbjct: 17  EPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHT 75
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
              V   +G +   SA  G  +VVI AG  ++ G +R +L   N NI K ++  +  + P
Sbjct: 76  AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 130
Query: 203 DAF 205
           D  
Sbjct: 131 DCL 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-176
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-173
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-169
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	4e-54
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	2e-43
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	2e-41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-41
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-40
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-39
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	4e-39
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	5e-39
3tl2_A	315	Malate dehydrogenase; center for structural genomi	7e-39
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	9e-39
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	2e-38
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	2e-38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	3e-38
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	3e-38
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	4e-38
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	4e-38
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	4e-38
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-37
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-37
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	2e-37
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	3e-37
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	3e-37
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	5e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	5e-36
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	5e-36
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	7e-36
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-35
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-35
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	2e-34
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	5e-33
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	1e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	4e-06
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	3e-05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	4e-05
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	7e-05
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	9e-05
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	2e-04
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	3e-04
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	4e-04
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	5e-04
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	5e-04
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	5e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  492 bits (1269), Expect = e-176
 Identities = 207/319 (64%), Positives = 245/319 (76%), Gaps = 2/319 (0%)

Query: 91  QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFT 150
              FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F 
Sbjct: 6   APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFL 65

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G ++L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A  CP A +++IS
Sbjct: 66  GQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           NPVNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+   L   DVDVPVVGGHA
Sbjct: 126 NPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 185

Query: 271 GITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVES 330
           G+TILPLLS+  P  SFT EE+  LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++
Sbjct: 186 GVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 245

Query: 331 SLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
            LR L GD  V EC FV S +TELPFFAS+V+LGRNG+E +    L  L EYE+  LE  
Sbjct: 246 CLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVY--SLGPLNEYERIGLEKA 303

Query: 391 KPELKASIEKGVAFAQKQA 409
           K EL  SIEKGV+F +   
Sbjct: 304 KKELAGSIEKGVSFIRSHH 322

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  485 bits (1251), Expect = e-173
 Identities = 188/312 (60%), Positives = 232/312 (74%), Gaps = 2/312 (0%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
           L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL  A A +CPDA I IISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 215 STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
           ST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FVA+ K L    V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 275 LPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
           +PL+S+  P V F  +++  LT RIQ AGTEVV+AKAGAGSATLSMAYA ARFV S + A
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 335 LDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394
           ++G   V EC FV+S  T+ P+F++ + LG+ G+E  +   +  ++ +E+K +    PEL
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL--GIGKISPFEEKMIAEAIPEL 299

Query: 395 KASIEKGVAFAQ 406
           KASI+KG  F +
Sbjct: 300 KASIKKGEEFVK 311

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  475 bits (1225), Expect = e-169
 Identities = 185/315 (58%), Positives = 223/315 (70%), Gaps = 6/315 (1%)

Query: 95  KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGP 152
           KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA  CP A I II+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
           VN+TV IAAEVLK+ GVYD  KLFGVTTLD++R+NTFVA+ K  +  +V+VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
           TILPLLS  +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM  AAARF  S +
Sbjct: 181 TILPLLS-QVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
           RAL G+  V EC +VE +     FF+  + LG+NGVE      +  L+ +EQ ALE +  
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERK--SIGTLSAFEQNALEGMLD 297

Query: 393 ELKASIEKGVAFAQK 407
            LK  I  G  F  K
Sbjct: 298 TLKKDIALGEEFVNK 312

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  182 bits (463), Expect = 4e-54
 Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 29/320 (9%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ ++GAAG IG  +A    M  L   L LYD     ++GVA ++ HC      L+ T  
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEG--LNLTFT 67

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDA-FIHIISN 211
            ++  AL     +V   G PRK GMTR+DL   NA I   L + +   CPD   + II N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD-VPVVGGHA 270
           P + T  +            P ++  +  LD  R  + +A+   +K   V      GGH 
Sbjct: 128 PADITGLVTLIYSG----LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 271 GITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
           G  +    S            + +   T+E+  +L  R+   G  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240

Query: 321 AYAAARFVESSLRALDGDGDVYECVFVES-NLTELPFFASRVKLGRNGVESLISSDLQGL 379
           +Y +   + +++             +V       +   A    + ++GV+    + L   
Sbjct: 241 SYVSIEMIRAAMG--GEAFRWPAGCYVNVPGFEHI-MMAMETTITKDGVKHSDINQL--G 295

Query: 380 TEYEQKALEALKPELKASIE 399
            E E+ AL+     L    +
Sbjct: 296 NEAERAALKESYSHLAKLRD 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  153 bits (388), Expect = 2e-43
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 56/331 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV----AADLSHCNTPSQVLDFT 150
           KV+V+GAAG +G      I +  +   +   D+ + +      AAD +H       + + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 151 GPEELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
               +         G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
              SNPV+          +       +++ G    LD  R    ++++ +  + +V+  +
Sbjct: 116 LTTSNPVDLLNRHL---YEAGD-RSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 266 VGGHAGITILPLLSKTM---PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
           +G H G   +P+ SK         F+ +E   L   +Q +  +V+E K   G+     A 
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPAR 227

Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
             A  VE+ L            L+G+    D    V         P     V LG NGVE
Sbjct: 228 GVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGV---------P-----VSLGSNGVE 273

Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
            ++  D   L +YEQ  +     +L    +K
Sbjct: 274 EIVEWD---LDDYEQDLMADAAEKLSDQYDK 301

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  152 bits (387), Expect = 2e-43
 Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 50/332 (15%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHC----NTPSQV 146
           KV ++GA+G +G   ALL+   P +  L L    +    ++G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
             +   +E    +   +VV+I +GVPRK GM+R DL   NA IV    + +A+ C     
Sbjct: 62  --YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
            +I+NPV+    +  + L     ++  ++FG+ T LD +R    +A+   + + +V   +
Sbjct: 120 -VITNPVDV---MTYKALVDSK-FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174

Query: 266 VGGHAGITILPLLSKTMPS-------VSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
           +G H G +++PLLS T            F +  + ++   ++  G +++  K   G +  
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEF 230

Query: 319 SMAYAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGV 368
             A A    V   +            +DG+ D    V +      +P     VK+GR+G+
Sbjct: 231 GPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCI-----GVP-----VKIGRDGI 280

Query: 369 ESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           E ++S +   L + E  A       +K   E+
Sbjct: 281 EEVVSIE---LDKDEIIAFRKSAEIIKKYCEE 309

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  148 bits (375), Expect = 2e-41
 Identities = 85/331 (25%), Positives = 150/331 (45%), Gaps = 54/331 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           KV V+GA G +G  +A  +    +   + + D+ +   +G A D+      S +  F   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRES---SPIHGFDTR 57

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            TG  +     +  +V +I AG+PR PGM+RDDL   N  IV  + E   +  PD+ I +
Sbjct: 58  VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NP++    +     +  G +   ++ G+   LD  R  +F+A++ ++ + DV   ++G
Sbjct: 117 VANPLDV---MTYVAYEASG-FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 268 GHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
           GH G T++PL   T    +P      D  + ++  R + AG E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
           AAA   E+ L+            DG+    D++           +P     VKLG  GVE
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDGEYGLDDLF---------IGVP-----VKLGAGGVE 275

Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
            +I  D   L   E+  L+     + ++++ 
Sbjct: 276 EVIEVD---LDADEKAQLKTSAGHVHSNLDD 303

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  146 bits (370), Expect = 7e-41
 Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 56/337 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ V+GA G +G   A  +    L   L L DV+    +G A D+        V  F   
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57

Query: 153 EELA---SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
              +   +     ++V+I AG+PRKPGMTR+DL   NA IVK + + +  +  +  I ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           SNP++    +A     + G    +++ G+   LD  R  +F+A +  + + D++  V+GG
Sbjct: 118 SNPLDIMTHVA---WVRSG-LPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 269 HAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
           H G  ++P++  T    +P       E +  L  R +N G E+VE     GSA  + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231

Query: 324 AARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVES 370
               VES +            L+G       +           +P     VKLGRNGVE 
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTF---------VGVP-----VKLGRNGVEQ 277

Query: 371 LISSDLQGLTEYEQKAL----EALKPELKASIEKGVA 403
           +   +   L + +   L    + +  E    +E  + 
Sbjct: 278 IYEIN---LDQADLDLLQKSAKIVD-ENCKMLESTIG 310

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  144 bits (367), Expect = 3e-40
 Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 59/336 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLD 148
           K++++GA G IG  +ALL+    L   ++++D++    +G A DL+HC     +P+++  
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73

Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
               E L    +  +VV+I AGVPRKP MTR DL  +NA IV ++ E V   CP+AF+  
Sbjct: 74  ENNYEYL----QNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           I+NP+++   +     ++ G     K+ G+   LD  R    +++   +K  DV   VVG
Sbjct: 130 ITNPLDA---MVYYFKEKSG-IPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185

Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           GH G  ++PL S            +     T  ++ ++  +    G E+VE     GSA 
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAF 243

Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
            + A +A    ++ L+           L G     +++           +P     V +G
Sbjct: 244 YAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNLF---------VGVP-----VVIG 289

Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +NG+E ++  +   L++ E+         ++  ++ 
Sbjct: 290 KNGIEDVVIVN---LSDDEKSLFSKSVESIQNLVQD 322

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  143 bits (362), Expect = 1e-39
 Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 54/331 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           K++++GA G +G   A  +    L   + L D++    +G A DL      S +  F   
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEA---SPIEGFDVR 58

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            TG     +     +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +
Sbjct: 59  VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NP+++   +A    +  G +  +++ G    LD  R  TF+A +  + + DV   ++G
Sbjct: 118 VNNPLDAMTYLA---AEVSG-FPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173

Query: 268 GHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
           GH G  ++PL   +    +P   F   + +  +  R +  G E+V      GSA  + A 
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAA 231

Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
           A A+ VE+ L+           L G     D+Y           +P     V LG  GVE
Sbjct: 232 ATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY---------FGVP-----VILGAGGVE 277

Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
            ++      L E E   L A    ++A+++ 
Sbjct: 278 KILELP---LNEEEMALLNASAKAVRATLDT 305

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  142 bits (360), Expect = 2e-39
 Identities = 79/330 (23%), Positives = 143/330 (43%), Gaps = 55/330 (16%)

Query: 96  VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLDF 149
           + +LGA G +G   A+++ M      L L        +G A DL+H         ++   
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS 59

Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
              E++    +G ++V++ AG+ RKPGMTR+ L   NAN +  L E +     DA + I 
Sbjct: 60  NSYEDM----RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
           +NPV++   +   + K+ G +  +++ G    LD  R   +++QK  +    V+  V+G 
Sbjct: 116 TNPVDA---MTYVMYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 269 HAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
           H G  + P+   +    +P     + EE+ ++     NAG ++ E +    S+    A  
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR--GYSSNYGPAAG 228

Query: 324 AARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVES 370
               VE+  R           L G+    D+           E+P       +G++G+E 
Sbjct: 229 LVLTVEAIKRDSKRIYPYSLYLQGEYGYNDIV---------AEVP-----AVIGKSGIER 274

Query: 371 LISSDLQGLTEYEQKALEALKPELKASIEK 400
           +I      LTE E++  +     +K  +E 
Sbjct: 275 IIELP---LTEDEKRKFDEAVQAVKKLVET 301

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  141 bits (359), Expect = 4e-39
 Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 59/336 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           K+AV+G+ G IG  +A ++    L + + L+D+     +G A D++H      +      
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHS---MVMFGSTSK 60

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             G ++  + + G +VV+I A +P +P   R +L   NA I+ ++ E V   CP+AF+  
Sbjct: 61  VIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           I+NP++    + +   K  G     K+ G+   LD  R  TF+AQ   +   DV   V+G
Sbjct: 120 ITNPLDV---MVSHFQKVSG-LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175

Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           GH G  ++P  S            +     T E++ ++    + A  EV +     G+A 
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAY 233

Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
            + A AA +  E+ L+                    +Y           +P       +G
Sbjct: 234 FAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIY---------MGVP-----TIIG 279

Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +NGVE ++  D   LT  EQK L     E+    + 
Sbjct: 280 KNGVEDILELD---LTPLEQKLLGESINEVNTISKV 312

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  141 bits (358), Expect = 5e-39
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 62/339 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KV ++G  G +G   A  +    +     + DV+    KG A DL           FT P
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA------QAFTAP 59

Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           +++ S      K  ++VVI AG P+KPG +R DL N N NI+ ++V+ V D+  D    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
            +NPV+    I      +   +  +++ G  T+LD  R    + ++ N+    VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
            H G +     S                  +D+++  L   ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
             +  A  R  ++ LR           +DG     D+Y            P       +G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIY---------IGTP-----AIIG 277

Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
             G++ +I S    L+  E K ++     LK  +  G+A
Sbjct: 278 GTGLKQIIESP---LSADELKKMQDSAATLKKVLNDGLA 313

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  141 bits (357), Expect = 7e-39
 Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 54/332 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAA----DLSHCNTPSQVLDFT 150
           KV+V+GA G  G   A L+    L   + L D+  ++        D+      S V  F 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELAD-VVLVDIPQLENPTKGKALDMLEA---SPVQGFD 64

Query: 151 GPEELA---SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
                    +     +VVVI AG+ RKPGM+RDDL   N+ I+K++   +A + P+A I 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
           +++NPV++   +   V K+ G +  +++ G    LD  R  TF+AQ+ NL + D+   V+
Sbjct: 125 VLTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 267 GGHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
           GGH G  ++PL+  +    +P  +    E +  +  R +  G E+V    G GSA  + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238

Query: 322 YAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGV 368
            +     E+ L+           L+G+    D+Y  V         P     V LG NG+
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDLYLGV---------P-----VILGGNGI 284

Query: 369 ESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           E +I  +   L   E++AL+     ++  ++ 
Sbjct: 285 EKIIELE---LLADEKEALDRSVESVRNVMKV 313

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  140 bits (356), Expect = 9e-39
 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 59/336 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           K+A++G+ G IG  LA L  +  L   + L+D+     +G   D++     S V  F   
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAES---SPVDGFDAK 63

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            TG  +  +A++G +VV++ AGVPRKPGM+RDDL  IN  +++ +   +    P+AF+  
Sbjct: 64  FTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           I+NP+++   +   + K  G     K+ G+   LD  R   F++++ N+ + DV V V+G
Sbjct: 123 ITNPLDA---MVWALQKFSG-LPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178

Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           GH G +++PL   +          +     + +++  +  R ++ G E+V      GSA 
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF 236

Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
            + A +A +  ES L+           L G     D+Y           +P       +G
Sbjct: 237 YAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMY---------VGVP-----TVIG 282

Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
            NGVE +I  D   L + E+   +     +    E 
Sbjct: 283 ANGVERIIEID---LDKDEKAQFDKSVASVAGLCEA 315

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  140 bits (355), Expect = 2e-38
 Identities = 77/340 (22%), Positives = 127/340 (37%), Gaps = 62/340 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
           KVA++GA G +G   A  +    +   L + DV      G   DL+H     P  V    
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G        K  ++V I AG  +KPG TR +L   N  I K +V  V  +  D    + +
Sbjct: 66  GT---YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+    I      +      +++ G  TTLD  R    +++       +V   ++G H
Sbjct: 123 NPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178

Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
                         G+ +  L+ K      +  EE+  +   ++NA   ++E K   G+ 
Sbjct: 179 GDTELPVWSHANVGGVPVSELVEKNDA---YKQEELDQIVDDVKNAAYHIIEKK---GAT 232

Query: 317 TLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKL 363
              +A + AR  ++ L            LDG     DVY           +P       +
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVY---------IGVP-----AVV 278

Query: 364 GRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
            R G+  +   +   L E E++        LK  ++   A
Sbjct: 279 NRGGIAGITELN---LNEKEKEQFLHSAGVLKNILKPHFA 315

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  140 bits (355), Expect = 2e-38
 Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 63/341 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           KVA++G+ G IG  +  L  +  L   + LYDV+    +G A DLSH    + V+D    
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHV---TSVVDTNVS 65

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPD 203
                   +AL G + V++ AG+ + PG      +R+DL   N+ I++ + + +   CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
            FI +++NP++    +   + +  G      + G+   LD  R   +VA   ++   DV 
Sbjct: 126 TFIIVVTNPLDC---MVKVMCEASG-VPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 263 VPVVGGHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAG 312
             V+G H G  ++PL+             +     T++++ ++    + +G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 313 AGSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFAS 359
            GSA  + A +A     S L             +G+    D++           LP    
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDMF---------IGLP---- 286

Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
              +G  G+E +I  +   L E E+K  +    ++ A  + 
Sbjct: 287 -AVIGGAGIERVIELE---LNEEEKKQFQKSVDDVMALNKA 323

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  139 bits (353), Expect = 3e-38
 Identities = 70/338 (20%), Positives = 127/338 (37%), Gaps = 62/338 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
           +V V+GA G +G      +    +   + L D       G A D +H     P  V  + 
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G        +  ++VVI AG  +KPG TR DL + N  I +++VE+V  +       + +
Sbjct: 67  GD---YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+    I      +      +++ G  T LD  R    + +  ++   +V   ++G H
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH 179

Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
                          + I  L+           +++  + V +++A  +++E K   G+ 
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKG---EEAQKDLERIFVNVRDAAYQIIEKK---GAT 233

Query: 317 TLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKL 363
              +A   AR   + L            LDG     DVY           +P       +
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY---------IGVP-----AVI 279

Query: 364 GRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKG 401
            RNG+  +I  +   L + E+         LK+ + + 
Sbjct: 280 NRNGIREVIEIE---LNDDEKNRFHHSAATLKSVLARA 314

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  139 bits (352), Expect = 3e-38
 Identities = 74/339 (21%), Positives = 124/339 (36%), Gaps = 43/339 (12%)

Query: 95  KVAVLGAAGGIGQPLALLI------KMSPLVSALHLYDVMNV----KGVAADLSHCNTP- 143
           +V V GAAG I   L   I           +  L L D+  +     GV  +L  C  P 
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII-LVLLDITPMMGVLDGVLMELQDCALPL 63

Query: 144 -SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
              V+     E    A K ++V ++   +PR+ GM R DL   N  I K    A+     
Sbjct: 64  LKDVIATDKEEI---AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 203 -DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDV 261
               + ++ NP N+    A+   K       +    +T LD  RA   +A K  +   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 262 DVPVVGGHAGITILPLLSKTM----------PSVSFTDEEV-GDLTVRIQNAGTEVVEAK 310
              ++ G+   T  P ++                   D  + G+    +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELP---FFASRVKLGRN 366
               SA +S A A    V         +G+     +  + N   +P    ++  V +   
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFGTP-EGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDK 294

Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405
             +  I   L  + ++ ++ ++    EL    EK  AF 
Sbjct: 295 TWK--IVEGLP-INDFSREKMDLTAKELAE--EKETAFE 328

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  139 bits (352), Expect = 4e-38
 Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 67/342 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KV ++G  G +G   A  + +  +   + + D+     KG A DLS+       L FT P
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSP 63

Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           +++ SA     K  ++VVI AG P+KPG TR DL N N  I+K++V+ + D+  +    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
            +NPV+    I      +   +   ++ G  T+LD  R    +A+  N+    V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
            H              G+TI   +          ++++  +   +++A  E+++ K   G
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPE---IKEDKLVKMFEDVRDAAYEIIKLK---G 233

Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
           +    +A A AR  ++ L            +DG     D+Y            P      
Sbjct: 234 ATFYGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIY---------IGTP-----A 279

Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
            + RNG+++++      LT++E+++++    +LK  +    A
Sbjct: 280 VINRNGIQNILEIP---LTDHEEESMQKSASQLKKVLTDAFA 318

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  139 bits (352), Expect = 4e-38
 Identities = 68/340 (20%), Positives = 130/340 (38%), Gaps = 66/340 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+AV+GA G +G  LA       +   + L D+    V+    D+ H         F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG------SSFYPT 61

Query: 153 EELASA-----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
             +  +      +  ++VVI AG  +KPG +R +L     NI+K ++  +    P+A   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
           +I+NPV+    IA  V ++       ++FG  T LD  R    +AQ+  + + +V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 267 GGH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGA 313
           G H              G+ +               ++  ++   ++NA  +++  K   
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWT-PLPGHDPLDADKREEIHQEVKNAAYKIINGK--- 233

Query: 314 GSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASR 360
           G+   ++  +    +E+ L            L       D+            +P     
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDIC---------MSVP----- 279

Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
             L R GV + I++    +++ E  AL+     LK +  +
Sbjct: 280 TLLNRQGVNNTINTP---VSDKELAALKRSAETLKETAAQ 316

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  138 bits (351), Expect = 4e-38
 Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 57/334 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
           KV ++G  G +G   A  +    +V  L + D+    V+G   DL H    +P+ V    
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G     S     ++VVI AG  +KPG TR DL + N  I K++V  V  +  D    + +
Sbjct: 67  GE---YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+    I A    +      +++ G  T LD  R    +++  ++    VD  ++G H
Sbjct: 124 NPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH 179

Query: 270 AGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
            G T LP+ S            +        ++  + V+ ++A  ++++AK   G+    
Sbjct: 180 -GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYG 235

Query: 320 MAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRN 366
           +A   AR  E+  R           L+G+    DVY           +P       + RN
Sbjct: 236 VAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVY---------IGVP-----AVINRN 281

Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           G+ +++      L + EQ         LK  + +
Sbjct: 282 GIRNVVEIP---LNDEEQSKFAHSAKTLKDIMAE 312

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  138 bits (349), Expect = 1e-37
 Identities = 91/351 (25%), Positives = 143/351 (40%), Gaps = 67/351 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ ++G  G +G   A  + M      + L DV     +G A DL H         FT  
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG------TPFTRR 54

Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             +     + LKG +VV++ AGVP+KPG TR  L   NA ++K +   V+   PD+ + +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NPV+         LK+ G  DP+K+FG  T LD  R  T +AQ        V V V+G
Sbjct: 115 VTNPVDVLTYFF---LKESG-MDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
            H              GI +  +            + + +   + + A  E++E K   G
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQK---CDSKILENFAEKTKRAAYEIIERK---G 224

Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
           +   ++A A A  VES              L+      D+            +P     V
Sbjct: 225 ATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLC---------ISVP-----V 270

Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
            LG++GVE ++  +   L E E +A       LK +I +  A   K    +
Sbjct: 271 TLGKHGVERILELN---LNEEELEAFRKSASILKNAINEITAEENKHQNTS 318

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  137 bits (347), Expect = 2e-37
 Identities = 70/339 (20%), Positives = 121/339 (35%), Gaps = 66/339 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KV ++G+ G +G   A  + +  +   + L D+     +  A D+ H         F  P
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA------TPFAHP 54

Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             +       L+G   VV+ AGV ++PG TR  L + NA +   +V  V +  P+A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
            +NPV+    +  +V        P ++ G  T LD  R    +A+   +    V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
            H              G+ +L          + + E+   +   ++ A   ++E K   G
Sbjct: 171 EHGDSEVLVWSSAQVGGVPLLEFAEAR--GRALSPEDRARIDEGVRRAAYRIIEGK---G 225

Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
           +    +    AR V + L                    +V            LP      
Sbjct: 226 ATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVS---------LSLP-----R 271

Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
            LG  GV   +      L+  E+ AL      LK +   
Sbjct: 272 ILGAGGVAGTVYPS---LSPEERAALRRSAEILKEAAFA 307

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  137 bits (347), Expect = 2e-37
 Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 64/338 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KVA++GA G +G   A  + +    + L L DV      G A D++H       L F G 
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61

Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             L     S +K  +V+V+ AG  RKPG TR DL   N  I K + + +        I +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           +SNPV+    I   ++++       K+ G  T LD +R    +++K  + + +V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 268 GHAGITILPLLSKT------------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
            H G + LPL S T             P  +FT+E+   +   ++ AG  +++ K   G+
Sbjct: 178 EH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA 233

Query: 316 ATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVK 362
               +A +    VE+ L+           ++G     DV            LP       
Sbjct: 234 TYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVA---------ISLP-----SI 279

Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +   GV+ ++  +   LT  E++AL     ++K  + +
Sbjct: 280 VNSEGVQEVLQFN---LTPEEEEALRFSAEQVKKVLNE 314

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  136 bits (346), Expect = 3e-37
 Identities = 85/345 (24%), Positives = 139/345 (40%), Gaps = 71/345 (20%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
           K+ ++G+ G IG  +A LI    L   + L+D++     G A D SH    + +      
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHT---NVMAYSNCK 60

Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPD 203
            +G       L G +VV++ AG  + PG +     RDDL  +N  I+  +   +  NCP+
Sbjct: 61  VSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119

Query: 204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
           AFI +++NPV+    +   + +  G     K+ G+   LD  R   +++QK N+   DV+
Sbjct: 120 AFIIVVTNPVDV---MVQLLHQHSG-VPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175

Query: 263 VPVVGGHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAG 312
             +VG H G  ++ L              + +   +D E+  +  R  N   E+V     
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH-- 232

Query: 313 AGSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFAS 359
             S  ++ A A     ES L+           L+G     D++            P    
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDIF---------GGTP---- 278

Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKAL----EALKPELKASIEK 400
            V LG NGVE +I      L   E+          K  +KA    
Sbjct: 279 -VVLGANGVEQVIELQ---LNSEEKAKFDEAIAETK-RMKALAHH 318

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  138 bits (349), Expect = 3e-37
 Identities = 70/326 (21%), Positives = 121/326 (37%), Gaps = 36/326 (11%)

Query: 95  KVAVLGAAGGIGQPLALLI------KMSPLVSALHLYDVM----NVKGVAADLSHCNTP- 143
            +AV GAAG I   L   +           ++ L L         ++GVA +L     P 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 144 -SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
             +V     P E     + V+  ++    PR PGM R  L +IN  I     +A+     
Sbjct: 93  LREVSIGIDPYE---VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 203 DAF-IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDV 261
               + ++ NP N+   I    LK       K    +T LD  RA   +A K  +    V
Sbjct: 150 KNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 262 DVPVVGGHAGITILPLLSKT-------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
               + G+   T +P               +  T     + T+ +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 315 SATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELP---FFASRVKLGRNGVES 370
           SA  S A + A  ++S +     +GD +   V+   N   +     F+   +   +G   
Sbjct: 266 SA-ASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323

Query: 371 LISSDLQGLTEYEQKALEALKPELKA 396
           L  +D+    ++  + ++  + EL A
Sbjct: 324 LA-TDVS-NDDFLWERIKKSEAELLA 347

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  136 bits (344), Expect = 5e-37
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 62/338 (18%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLD 148
           K+ ++GA G IG  LA L  +  L   + L+D+      G A DL           +V  
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64

Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
               ++L    +  +VV++ AGVPRKPGM+RDDL  IN  +++T+ E +  NCP+AF+  
Sbjct: 65  TNDYKDL----ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           I+NP++    +   + K  G     K+ G+   LD  R  TF+A + N+ +  V   V+G
Sbjct: 121 ITNPLDI---MVNMLQKFSG-VPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176

Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
           GH G T++PL   +          +       E +  +  R ++ G E+V      GSA 
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY 234

Query: 318 LSMAYAAARFVESSLR----------ALDG-----DGDVYECVFVESNLTELPFFASRVK 362
            + A A  +  ES L+           +       D D++           +P      +
Sbjct: 235 YAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLF---------VGVP-----TE 280

Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +  NGV  +   +++ +++ E++ L+     +K   + 
Sbjct: 281 ISANGVRPI---EVE-ISDKEREQLQVSINAIKDLNKA 314

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  133 bits (338), Expect = 5e-36
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 54/334 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC--NTPSQVLDFT 150
           K+ V+G  G +G   A+ I M  L   L L DV+   +KG   DL H      +  +  +
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
                 S      +V+I AG  ++ G +R +L   N NI K ++  V    P   + I+S
Sbjct: 80  KD---YSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
           NPV+    I   V  +   +   ++ G    LD  R    + ++  +  +     V+G H
Sbjct: 137 NPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH 192

Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
                        AG+++  L  +         E+  D+  ++ ++  EV++ K   G  
Sbjct: 193 GDSSVPVWSGVNVAGVSLKSLNPQL--GTDADKEQWKDVHKQVVDSAYEVIKLK---GYT 247

Query: 317 TLSMAYAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRN 366
           + ++  + A   ES ++           + G   + E VF+      +P       LG+N
Sbjct: 248 SWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFL-----SVP-----CILGQN 297

Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           G+  ++      LT  E+  L+     L    ++
Sbjct: 298 GISDVVKVT---LTPDEEARLKKSADTLWGIQKE 328

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  132 bits (335), Expect = 5e-36
 Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 56/326 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+  +GA G +G   A    ++  V  + L D+      G A DL+H    +  +D   P
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHA---AAGIDKY-P 56

Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           + +  A    LKG  ++V+ AG+ RKPGMTR DL + NA I+K + + + +N P++ I +
Sbjct: 57  KIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
           ++NP++    I     K+ G     ++FG+   LD  R    +              ++G
Sbjct: 117 VTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRLKERLYNA--GARNIRRAWIIG 170

Query: 268 GHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
            H G ++    S         + +   +   ++    EV++ K   G+     A A  R 
Sbjct: 171 EH-GDSMFVAKSLA--DFD-GEVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRM 223

Query: 328 VESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVESLISS 374
           V++ +            L G+    +V   V         P      KLG+NG E     
Sbjct: 224 VKAVVEDTGEIIPTSMILQGEYGIENVAVGV---------P-----AKLGKNGAEVA--- 266

Query: 375 DLQGLTEYEQKALEALKPELKASIEK 400
           D++ L++ E + L      L+  +E+
Sbjct: 267 DIK-LSDEEIEKLRNSAKILRERLEE 291

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  133 bits (336), Expect = 7e-36
 Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 31/325 (9%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVM----NVKGVAADLSHCNTP-- 143
           +VAV GAAG IG  L   I    ++       L L ++      ++GV  +L  C  P  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 144 SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP- 202
           + +     P+    A K  +  ++    PRK GM R DL  +N  I      A+A+    
Sbjct: 66  AGLEATDDPKV---AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
           D  + ++ NP N+   IA    K     +P+    +T LD  RA   +A+K    +  + 
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 263 VPVVGGHAGITILPLLSKT----MPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSA 316
              V G+   T+ P L        P++   D E         +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISS 374
             S A AA   +         +GD             +P     S     ++G   ++  
Sbjct: 239 -ASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVV-E 295

Query: 375 DLQGLTEYEQKALEALKPELKASIE 399
            L+ + E+ +K +E    EL   +E
Sbjct: 296 GLE-INEFARKRMEITAQELLDEME 319

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  131 bits (333), Expect = 2e-35
 Identities = 78/336 (23%), Positives = 126/336 (37%), Gaps = 66/336 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           KV V+G  G +G   A  + +    S L L D      +  A D++H          +  
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
             +     S L    VV++ AG  +KPG +R DL   NA+I + LV  +    PDA + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPK-KLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
            SNPV+    +A ++        P   + G  T LD  R    +AQ   +        V+
Sbjct: 115 TSNPVDLLTDLATQLA-------PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 267 GGH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGA 313
           G H             AG+ +   +     ++ + ++    +    +NA   ++E K   
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQ--NLPWNEQVRAKIDEGTRNAAASIIEGK--- 222

Query: 314 GSATLSMAYAAARFVESSLR---------ALDGDGDVYECVFVESNLTELPFFASRVKLG 364
            +    +  A AR  E+ LR         A   +  V            LP       +G
Sbjct: 223 RATYYGIGAALARITEAVLRDRRAVLTVSAPTPEYGVS---------LSLP-----RVVG 268

Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           R GV S +      LT  EQ+ LE     L+   ++
Sbjct: 269 RQGVLSTLHPK---LTGDEQQKLEQSAGVLRGFKQQ 301

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  131 bits (332), Expect = 2e-35
 Identities = 65/323 (20%), Positives = 109/323 (33%), Gaps = 64/323 (19%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-NVKGVAADLSHCNTPSQVL--DFTG 151
           K+ V+G  G +G    L I    +   L L D+    KG   DL   N P+  +  D   
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-- 72

Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
                SA     VV+           +  D+   N ++ + LV A+      + + + S 
Sbjct: 73  -----SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126

Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
           P    V I   V  +   +   ++ G+   LD  R    +      +    +V V+G   
Sbjct: 127 P----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ- 181

Query: 271 GITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVES 330
           G   +   S     VS T +       ++ N   E++  K   G  + S+  + A  V+S
Sbjct: 182 GEDKVLTWSGQEEVVSHTSQV------QLSNRAMELLRVK---GQRSWSVGLSVADMVDS 232

Query: 331 SLR----------ALDG----DGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL 376
            +              G    + +V+           LP       LG NGV  +I +  
Sbjct: 233 IVNNKKKVHSVSALAKGYYDINSEVF---------LSLP-----CILGTNGVSEVIKTT- 277

Query: 377 QGLTEYEQKALEALKPELKASIE 399
             L E            L++S  
Sbjct: 278 --LKEDTVTEK------LQSSAS 292

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  129 bits (326), Expect = 2e-34
 Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 29/252 (11%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPL-----VSALHLYDVMN------VKGVAADLSHCNTP 143
           +VAV GAAG I   L   I    +        L L ++ N      ++GV  ++  C  P
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP 66

Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
             + +     P     A K  +V ++    PR PGM R DL   NA I     +A+    
Sbjct: 67  LLAGMTAHADPMT---AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVA 123

Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
             +  + ++ NP N+   IA   +K       K    +  LD  RA + +A K    +  
Sbjct: 124 SRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180

Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEEV---GDLTVRIQNAGTEVVEAKAGA 313
           ++   V G+   T+                  +++          +   G  +++A+ G 
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-GV 239

Query: 314 GSATLSMAYAAA 325
            SA  S A AA 
Sbjct: 240 SSA-ASAANAAI 250

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  125 bits (317), Expect = 5e-33
 Identities = 63/318 (19%), Positives = 110/318 (34%), Gaps = 47/318 (14%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ V+G    +G   A+ + M  L   + L DVM   +KG   DL H         F   
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHG------SLFLHT 75

Query: 153 EELASA-----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
            ++ S        G  +VVI AG  ++ G +R +L   N NI K ++  +  + PD    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
           +                K  G     ++ G    LD  R    + ++  +    V   V+
Sbjct: 136 LHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 267 GGHAGITILPLLSKTMPS-----VSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
           G H G ++  + S    +     V  +  EV  L      A   VV       +      
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250

Query: 322 YAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESL 371
            + A   ++ ++           +     + + VF+      LP       L  NG+   
Sbjct: 251 CSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFL-----SLP-----CVLN-NGISHC 299

Query: 372 ISSDLQGLTEYEQKALEA 389
               ++ L   E++ L+ 
Sbjct: 300 NIVKMK-LKPDEEQQLQK 316

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  123 bits (312), Expect = 1e-32
 Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 54/331 (16%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC--NTPSQVLDFT 150
           K+ ++G  G +G  +A  +    +       D     VK    D      N  +      
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 151 GPEELASALKGVNVVVIPAGVPR----KPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
                 +AL   +VV+   G  +     P   R       +++V+++   + ++     +
Sbjct: 62  ND---WAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVL 118

Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
            +ISNPV+    +   + +    +   K+ G  T LD  R    V +  +L    V    
Sbjct: 119 VVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYN 174

Query: 266 VGGHAGITILPLLSKT----MPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
           +G H G +     S       P V+  D    ++  +    +  G  V+  K   G  + 
Sbjct: 175 LGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSY 230

Query: 319 SMAYAAARFVESSLR---------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVE 369
            +A +A R  ++ +              D  +Y            P       +GR+GV 
Sbjct: 231 GVATSAIRIAKAVMADAHAELVVSNRRDDMGMY---------LSYP-----AIIGRDGVL 276

Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
           +  + D   LT  EQ+ L   +  ++   ++
Sbjct: 277 AETTLD---LTTDEQEKLLQSRDYIQQRFDE 304

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 51/378 (13%), Positives = 87/378 (23%), Gaps = 149/378 (39%)

Query: 140 CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMT--RDDLFNI--NANIV----- 190
              PS  +      E    L   N V     V R       R  L  +    N++     
Sbjct: 102 QRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 191 ---KT-LV-EAVAD-------------------NCPDAFI-------HIISNPVNS---- 215
              KT +  +                       N P+  +       + I     S    
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 216 --TVPIAAEVLKQK------------------GVYDPK--KLFG------VTTLDVVRAN 247
              + +    ++ +                   V + K    F       +TT      +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 248 TFVAQKKNLKLIDVDVPVVGGHAGIT---ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGT 304
              A           + +      +T   +  LL K      + D    DL         
Sbjct: 280 FLSAATT------THISLDHHSMTLTPDEVKSLLLK------YLDCRPQDLP-------- 319

Query: 305 EVVEAKAGAGSATLSMAYAAAR-------------------FVESSLRALDGDGDVYEC- 344
              E         LS+   + R                    +ESSL  L+   +  +  
Sbjct: 320 --REVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMF 375

Query: 345 ----VFVES-NLTE------------------LPFFASRVKLGRNGVESLIS-SDLQGLT 380
               VF  S ++                    +        + +   ES IS   +    
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--L 433

Query: 381 EYEQKALEALKPELKASI 398
           E + K     +  L  SI
Sbjct: 434 ELKVKLEN--EYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 15/137 (10%)

Query: 282 MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGD- 340
           MP    + EE+      I  +   V        +          +FVE  LR    +   
Sbjct: 41  MPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKF 93

Query: 341 VYECVFVESNLTELP---FFASRVKLGRNGVESLISSDLQGLTEYEQ--KALEALKPELK 395
           +   +  E     +    +   R +L  N  +     ++  L  Y +  +AL  L+P   
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 396 ASIEKGVAFAQKQAVAA 412
             I+ GV  + K  VA 
Sbjct: 153 VLID-GVLGSGKTWVAL 168

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 95  KVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNTPSQVLD 148
            VA ++G  G IG  LA +     L  A        V GVA     A            D
Sbjct: 2   SVALIVGVTGIIGNSLAEI-----LPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCD 56

Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
            + P++  + L  +  V     V      T  +    N+ + + +++AV  NCP
Sbjct: 57  ISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCP 110

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 34/151 (22%)

Query: 93  SFKVAVLGAAGGIGQPLAL--LIKMSPL--VSALHLYDV-----MNVKGVAADLS-HCNT 142
           SF + + G  G    P  +  L+       +  L LYD        + G           
Sbjct: 28  SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86

Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI------------- 189
             +    T PEE   A   V+ V+    V +      D+   +   +             
Sbjct: 87  DIEFAATTDPEE---AFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAY 143

Query: 190 -------VKTLVEAVADNCPDAFIHIISNPV 213
                  V  +++ +    PDA++   SNP 
Sbjct: 144 GMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 13/113 (11%), Positives = 26/113 (23%), Gaps = 18/113 (15%)

Query: 76  KAQSSEQRPQYALQPQASF---KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG 132
            +                     V +LGA G I + +         ++ L     +    
Sbjct: 3   SSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHV---------INQLADKQTIKQTL 53

Query: 133 V------AADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTR 179
                         N+   + D      L  A++G ++V              
Sbjct: 54  FARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQAN 106

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-----DF 149
           K+ ++GA+G +G  L         ++         V  V          ++ L     D 
Sbjct: 6   KIVLIGASGFVGSALLNE-----ALNRGF-----EVTAVVRHPEKIKIENEHLKVKKADV 55

Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN 200
           +  +E+    KG + V+        PG    D+++    +  T+++ V   
Sbjct: 56  SSLDEVCEVCKGADAVISAFN----PGWNNPDIYDETIKVYLTIIDGVKKA 102

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 36/153 (23%)

Query: 92  ASFKVAVLGAAGGIGQPLAL---LIKMSPLVSALHLYDV-----MNVKGVAADLSHCNTP 143
              K+A +G  G  G   +L   L     +   + LYD+        + +       N  
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSG--NGR 60

Query: 144 SQVLDFTGPEELASALKGVNVVVIPAGV------------PRKPGMTRDDLFNINA---- 187
            +    +  ++   AL   ++V+I                P + G+ +     +      
Sbjct: 61  WRYEAVSTLKK---ALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGII 117

Query: 188 ------NIVKTLVEAVADNCPDAFIHIISNPVN 214
                  I   +  A+ D  P++++   +NP++
Sbjct: 118 RGLRAVPIFAEIARAIRDYAPESWVINYTNPMS 150

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 95  KVAVLGAAGGIGQPLAL-LIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           K+ + G  G IG  +    +K+          +      +    S      +  +    E
Sbjct: 13  KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKG-ELDEHE 71

Query: 154 ELASALKGVNVVVIPAGVP 172
           +L   +K V+VV+     P
Sbjct: 72  KLVELMKKVDVVISALAFP 90

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 23/120 (19%)

Query: 95  KVAVLGAAGGIGQPLA-LLIKMSPLVSAL-----HLYDVMNVKGVAADLSHCNTPSQVLD 148
           K+ ++G+ G +G+ L   L      + A       +    NVK V  D+           
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVD---------- 51

Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
              PEE+A  L G++ ++  +G   K       L  ++      L++A        FI +
Sbjct: 52  -WTPEEMAKQLHGMDAIINVSGSGGK------SLLKVDLYGAVKLMQAAEKAEVKRFILL 104

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 95  KVAVLGAAGGIGQPL--ALLIKMSP---LVSALHLYDVMNVKGVAADLSHCNTPSQVLDF 149
           K+ + G  G IG+ +  A L    P       L      +   +  +           + 
Sbjct: 6   KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65

Query: 150 TGPEELASALKGVNVVVIPAGVP 172
              E++ S LK V++V+     P
Sbjct: 66  EEHEKMVSVLKQVDIVISALPFP 88

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 34/151 (22%)

Query: 94  FKVAVLGA----AGGIGQPLALLIKMSPLVSALHLYDVM-------NVKGVAADLSHCNT 142
            K+A +G        + + L       P V  L L D+         V  +A  +     
Sbjct: 8   LKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKAG 66

Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGV------------PRKPGMTRDDLFNI----- 185
               ++     +   AL G + V     V            P K G+   +         
Sbjct: 67  VP--IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFK 124

Query: 186 NANIVKTLVEAVAD---NCPDAFIHIISNPV 213
               +  +++ + D    CPDA++   +NP 
Sbjct: 125 GLRTIPVILDIIRDMEELCPDAWLINFTNPA 155

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 95  KVAVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           +V V+GA G + + L   L        A+    V N +          +   ++     E
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVAM----VRNEEQGPELRERGASD--IVVANLEE 76

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           + + A   ++ VV  AG     G   D    I+       ++         FI +
Sbjct: 77  DFSHAFASIDAVVFAAGSGPHTG--ADKTILIDLWGAIKTIQEAEKRGIKRFIMV 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.96
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.95
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.71
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.59
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.56
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.5
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.4
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.37
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.19
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.19
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.17
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.16
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.08
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.55
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.54
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.51
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.49
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.41
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.39
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.38
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.37
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.31
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.29
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.26
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.26
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.24
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.21
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.21
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.2
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.19
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.15
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.14
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.13
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.13
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.11
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.1
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.09
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.08
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.08
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.07
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.06
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.06
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.04
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.03
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.02
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.01
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.01
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.0
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.99
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.99
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.99
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.99
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.98
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.96
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.96
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.95
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.94
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.94
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.93
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.93
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.91
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	97.9
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.9
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.88
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.87
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.87
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.86
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.86
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.86
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.86
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.85
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.84
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.84
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.84
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.84
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.83
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.8
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.79
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	97.78
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.78
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.77
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	97.75
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.75
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.74
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.74
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.73
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	97.72
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.72
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.7
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.7
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.69
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.69
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.68
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.68
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.68
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.68
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.67
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.67
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.66
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.65
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	97.65
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.65
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.64
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.63
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.63
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	97.62
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.62
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.61
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.6
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.6
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.59
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.58
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.58
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.57
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.56
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.56
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.55
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.55
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.54
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.54
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.52
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	97.52
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.51
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.5
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.49
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.48
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	97.46
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.46
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.45
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.45
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.45
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.44
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.44
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.43
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.42
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.42
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.39
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.36
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.36
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.35
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.35
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.34
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.33
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.33
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.31
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.3
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.3
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.3
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.29
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.28
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.26
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.26
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.24
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.24
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.23
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.23
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.22
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.22
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.2
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.2
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.18
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.18
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.17
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.17
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.13
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.11
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.11
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.11
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.1
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.1
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.1
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.09
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.08
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.07
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.06
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.06
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.05
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.04
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.03
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.03
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.03
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.02
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.08
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.02
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.02
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.01
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.0
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.99
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.99
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.98
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.98
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.97
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.96
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.96
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.95
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.94
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.93
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.93
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.92
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.91
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.91
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.91
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.9
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.9
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.9
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.87
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.87
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.86
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.86
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.85
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.85
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.83
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.83
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.83
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.82
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.82
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.82
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.81
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.81
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.81
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.81
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.8
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.8
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.79
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.79
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.78
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.77
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.77
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.77
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.77
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.75
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.75
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.75
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.75
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.75
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.75
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.75
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.74
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.74
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.73
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.72
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.72
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.72
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.71
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.71
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.69
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.69
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.68
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.68
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.68
1spx_A	278	Short-chain reductase family member (5L265); paral	96.67
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.67
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.66
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.66
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.65
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	96.65
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.64
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.64
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.63
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.63
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.63
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.62
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.62
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.61
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.61
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.61
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.61
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.6
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.6
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.59
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.59
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.59
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.59
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.58
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.57
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.57
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.57
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.57
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.57
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.56
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.56
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.55
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.55
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.55
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.55
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.53
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.52
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.52
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.52
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.52
4f6l_B	508	AUSA reductase domain protein; thioester reductase	96.51
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.51
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.51
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.51
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.51
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.51
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.5
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.5
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.5
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.49
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.49
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.49
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.48
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.48
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.48
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.47
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.47
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.46
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.46
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.45
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.44
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.44
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.44
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.44
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.44
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.43
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.43
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.43
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.43
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.42
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.42
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.42
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.42
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.41
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.41
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.41
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.41
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.4
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.4
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.38
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.38
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.37
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.37
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.37
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.37
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.37
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.36
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.36
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.35
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.35
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.35
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.35
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.34
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.34
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.33
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.33
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.32
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.32
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.31
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.31
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.31
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.29
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.29
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.28
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.28
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.28
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.27
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.27
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.25
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.25
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.25
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.23
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.23
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.21
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.21
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.2
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.18
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.18
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.17
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.17
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.17
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.16
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.15
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.14
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.13
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.13
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.12
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.12
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.12
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.11
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.1
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.09
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.09
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.08
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.08
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.07
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.05
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.02
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.01
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.0
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.98
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.97
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.97
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.97
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.96
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.96
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.92
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.92
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.9
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.9
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	95.9
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.88
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.88
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	95.88
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.87
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	95.87
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.87
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.86
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.84
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.83
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.83
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.83
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.82
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.8
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.8
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.8
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.79
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.76
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.76
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.74
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.73
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.73
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	95.72
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.7
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.67
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.67
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.62
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.62
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	95.62
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.6
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.6
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.56
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.54
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.54
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.54
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.52
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.52
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.51
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.51
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.5
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.5
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.45
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.45
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.41
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.41

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=3.2e-66  Score=512.12  Aligned_cols=309  Identities=59%  Similarity=0.856  Sum_probs=274.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||+|.||+++++.|+.+ ++.+||+|+|+++ ..|+++||.|...+..+..+.++++|+ +++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~-~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHH-HHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHH-HhCCCCEEEEeCCC
Confidence            79999996699999999999987 8888999999997 779999999975433343333345675 89999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCC-CCCCeEeccccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVY-DPKKLFGVTTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~-~~~kviGlt~Lds~R~~~~l  250 (412)
                      ||+|||+|+|++..|+++++++++.|+++||+++++++|||+|++++++.++. +.+|+ |++||||+|.||++|++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~-k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVL-KKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHH-HHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHH-HHcCCCCcceEEEEechhHHHHHHHH
Confidence            99999999999999999999999999999999999999999997666655544 44566 99999999999999999999


Q ss_pred             HHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHH
Q 015172          251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVES  330 (412)
Q Consensus       251 a~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~a  330 (412)
                      |+++|+++++|+++|||||+|+++||+||++ +-..+++++|+++.++++++|++|+++|.|.|+++||+|+|+++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~a  237 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHH
Confidence            9999999999999999999778999999998 434478889999999999999999999877789999999999999999


Q ss_pred             HHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015172          331 SLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK  407 (412)
Q Consensus       331 il~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~  407 (412)
                      |+..+++++.++||+|++++...++|||+||++|++|++++++  +++|+++|+++|++|+++|+++++++++|+++
T Consensus       238 i~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~--~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          238 LVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS--IGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9766666778999998876534567999999999999999999  34999999999999999999999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.2e-63  Score=494.37  Aligned_cols=313  Identities=60%  Similarity=0.940  Sum_probs=289.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+||||+|+||+++++.|+..+++++|+|+|+++.++.++||.|...+..+..+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999997799999999999999988899999999878889999997655444443345789888999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHH
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQK  253 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~  253 (412)
                      ++|++|+|++.+|+++++++++.|++++|+++++++|||+|.+++|+++++++.+++|++||||+|+||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988988899999999999999999999999999999999


Q ss_pred             cCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHh
Q 015172          254 KNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR  333 (412)
Q Consensus       254 l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~  333 (412)
                      +|++|++|+++|+|+|+|++++|+||++.|..++++++|+++.+++++++++|++.|.|+|+++|++|+++++++++|++
T Consensus       161 l~v~~~~v~~~v~G~H~G~~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~  240 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVD  240 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCCcEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHc
Confidence            99999999999999995589999999999877788999999999999999999998867789999999999999999999


Q ss_pred             ccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172          334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ  408 (412)
Q Consensus       334 ~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~  408 (412)
                      |++|++.+++|++++++|+++.|||+||+||++|++++++  +.+|+++|+++|++|+++|++.++++++|++++
T Consensus       241 ~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~--l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~~~  313 (314)
T 1mld_A          241 AMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLG--IGKISPFEEKMIAEAIPELKASIKKGEEFVKNM  313 (314)
T ss_dssp             HHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECC--CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9877668999988888787788999999999999999988  239999999999999999999999999998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=5e-63  Score=492.64  Aligned_cols=296  Identities=24%  Similarity=0.345  Sum_probs=263.6

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      +.+.+||+|||| |.||+++|+.++.++++++|+|+|+++  ++++++||.|+........+..++||+ +++|||+||+
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi   93 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVII   93 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEE
Confidence            455789999998 999999999999999999999999987  689999999985211123344567897 7999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA  246 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~  246 (412)
                      ++|.||+|||+|+|++.+|++|+++++++|+++||+++++++|||+|    ++++++++.+++||+||||+ |.||++|+
T Consensus        94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd----i~t~~~~k~sg~p~~rviG~gt~LD~~R~  169 (331)
T 4aj2_A           94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARF  169 (331)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHHhCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    67888899989999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC--------CCChHHHHHHHHHHhhccchhhhcccCCC
Q 015172          247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV--------SFTDEEVGDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~--------~~~~~~~~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      ++++|+++|+++++|+++|||||| +++||+||+++.    ..        .+++++|++|.++++++|++|+++|   |
T Consensus       170 ~~~la~~lgv~~~~V~~~ViGeHG-~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g  245 (331)
T 4aj2_A          170 RYLMGERLGVHPLSCHGWVLGEHG-DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G  245 (331)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSS-TTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHhCCCHHHCEEeEEecCC-CceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---C
Confidence            999999999999999999999996 699999999852    21        2456789999999999999999999   7


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      +|+|++|+++++++++|++|   +++++|++ |++++|  ++++|||+||++|++|++++++   ++|+++|+++|++|+
T Consensus       246 ~t~~a~a~a~a~~~~ail~d---~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~---l~L~~~E~~~l~~s~  319 (331)
T 4aj2_A          246 YTSWAIGLSVADLAESIMKN---LRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK---VTLTPDEEARLKKSA  319 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEEC---CCCCHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEcc---CCCCHHHHHHHHHHH
Confidence            89999999999999999998   46789987 455444  5678999999999999999999   789999999999999


Q ss_pred             HHHHHHHHHHH
Q 015172          392 PELKASIEKGV  402 (412)
Q Consensus       392 ~~L~~~i~~~~  402 (412)
                      ++|++ +.+++
T Consensus       320 ~~l~~-~~~~~  329 (331)
T 4aj2_A          320 DTLWG-IQKEL  329 (331)
T ss_dssp             HHHHH-HHTTC
T ss_pred             HHHHH-HHhhc
Confidence            99997 44433

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=5.1e-63  Score=485.05  Aligned_cols=285  Identities=24%  Similarity=0.386  Sum_probs=253.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||| |.||+++|+.|+.+++++||+|+|+++  ++|+++||.|+.... ....+.+++||+ +++|||+||++||
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~-~~~~aDvVvitAG   78 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS-LLKGSEIIVVTAG   78 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGG-GGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHH-HhCCCCEEEEecC
Confidence            79999998 999999999999999999999999998  789999999975321 122345667896 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .||+|||+|+||+..|++|+++++++|.++||+++++++|||+|    ++++++++.+|+|++|+||+ |.||++||+++
T Consensus        79 ~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd----~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~  154 (294)
T 2x0j_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKER  154 (294)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSSCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcch----hhHHhhHHHcCCChhhEEEeeeEEeHHHHHHH
Confidence            99999999999999999999999999999999999999999999    56777889999999999999 89999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVE  329 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~  329 (412)
                      |++.+++++.  +++|+|+|| +++||+||++.+..   ..+++++.++++++|+||+++|   |+|+|++|++++++++
T Consensus       155 l~~~~~~~~~--~~~V~G~HG-dt~vp~~S~~~v~g---~~~~~~i~~~~~~~g~eIi~~k---Gst~~a~a~a~~~~~~  225 (294)
T 2x0j_A          155 LYNAGARNIR--RAWIIGEHG-DSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMVK  225 (294)
T ss_dssp             HHHTTCEEEC--CCCEEBCSS-TTCEECGGGCCEES---CCCHHHHHHHHHTHHHHHHHHH---SSCCHHHHHHHHHHHH
T ss_pred             HhhcccCCcc--eeEEEecCC-CcEEEeeeccCCCC---chhHHHHHHHHhhhheEEEecC---cccchhHHHHHHHHHH
Confidence            9999887653  689999996 79999999987533   2357888999999999999998   8999999999999999


Q ss_pred             HHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          330 SSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       330 ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      +|+++   +++++||+. ++++| .+++|||+||+||++|++ +++   ++||++|+++|++|++.||+.+++
T Consensus       226 ail~d---~~~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~---l~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          226 AVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VAD---IKLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECC---CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcC---CCcEEEEEEEEecCCCCccEEEEEEEEEeCCEEE-EeC---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99998   578999975 55555 245799999999999985 888   789999999999999999998875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=6.6e-62  Score=481.68  Aligned_cols=299  Identities=27%  Similarity=0.482  Sum_probs=259.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||| |.||+++|+.++..+++++|+|+|+++  ++++++||.|....  ... .+.++++|+ +++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~-~v~~~~~~~-a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDT-RVTGTNDYG-PTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCC-EEEEESSSG-GGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCc-EEEECCCHH-HhCCCCEEEECC
Confidence            79999998 999999999999999999999999988  68899999997532  122 233446675 899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~~  248 (412)
                      |.||+|||+|+|++..|+++++++++.|+++||+++++++|||+|    ++++++++.+|+||+||||+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHH----HHHHHHHHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchh----HHHHHHHHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999    556667788889999999995 999999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHH
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA  323 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a  323 (412)
                      ++|+++|+++++|+++|||||| +++||+||+++    |..+ +++++++++.++++++|++|+++| |. +|+|++|++
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg-~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHG-DTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSG-GGEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCC-CcEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            9999999999999999999997 69999999986    4444 467778999999999999999998 32 899999999


Q ss_pred             HHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015172          324 AARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKG  401 (412)
Q Consensus       324 ~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~  401 (412)
                      +++|+++|+.+   +++++||+ +++++| .+++|||+||++|++|++++++   ++|+++|+++|++|+++|++.+++.
T Consensus       231 ~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~---l~L~~~E~~~l~~s~~~l~~~~~~~  304 (314)
T 3nep_X          231 AAEMTEAILKD---NKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIE---VDLDADEKAQLKTSAGHVHSNLDDL  304 (314)
T ss_dssp             HHHHHHHHHHT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CCeEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecC---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998   56899987 556555 2467999999999999999998   6899999999999999999999998


Q ss_pred             HHHHhhh
Q 015172          402 VAFAQKQ  408 (412)
Q Consensus       402 ~~~~~~~  408 (412)
                      .+++++.
T Consensus       305 ~~~l~~~  311 (314)
T 3nep_X          305 QRLRDEG  311 (314)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhcc
Confidence            7777653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=4.3e-62  Score=485.03  Aligned_cols=292  Identities=24%  Similarity=0.392  Sum_probs=243.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ..+||+|||| |.||+++|+.++..+++++|+|+|+++  ++++++||.|.... ..+. ++ +++|+ +++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~-i~-~~~~~-a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKK-IY-SAEYS-DAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCE-EE-ECCGG-GGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcE-EE-ECcHH-HhcCCCEEEEC
Confidence            3579999998 999999999999999999999999987  68899999997521 1222 22 35675 89999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.||+|||+|+|++..|+++++++++.|+++||+++++++|||+|    ++++++++.+++||+||||+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvd----i~t~~~~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchH----HHHHHHHHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCCC-------ChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVSF-------TDEEVGDLTVRIQNAGTEVVEAKAGAGSA  316 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~~-------~~~~~~~l~~~v~~~g~eii~~K~g~gst  316 (412)
                      +++|+++|+++++|+++|||||| +++||+||++++    ..++       ++++++++.++++++|++|+++|   |+|
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHG-dt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCC-CeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcC---CCc
Confidence            99999999999999999999996 799999999863    2221       46678999999999999999998   899


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECV-FVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      +|++|+++++++++|+.+   +++++||+ |++++|. +++|||+||++|++|++++++   ++|+++|+++|++|+++|
T Consensus       236 ~~a~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~---l~L~~~E~~~l~~sa~~L  309 (326)
T 3vku_A          236 FYGIATALARISKAILND---ENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILE---IPLTDHEEESMQKSASQL  309 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcC---CCceEEEEeeccCccCCCceEEEEEEEEcCCceEEEec---CCCCHHHHHHHHHHHHHH
Confidence            999999999999999998   56899986 5666552 367999999999999999999   689999999999999999


Q ss_pred             HHHHHHH
Q 015172          395 KASIEKG  401 (412)
Q Consensus       395 ~~~i~~~  401 (412)
                      ++.+++.
T Consensus       310 ~~~~~~~  316 (326)
T 3vku_A          310 KKVLTDA  316 (326)
T ss_dssp             HCC----
T ss_pred             HHHHHHH
Confidence            9988875

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=3.2e-60  Score=472.07  Aligned_cols=315  Identities=66%  Similarity=1.021  Sum_probs=283.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ++|||+|+||+|+||+++++.|+..+++.+|+|+|+++..+.++||.|...+..+..+.+++|++++++|||+||+++|.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            35899999966999999999999999777999999987677888898865443344444567888899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA  251 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la  251 (412)
                      |+++|++|.|++..|+++++++++++++++|+++++++|||+|+++|++++++++.+++|++||||+|.||+.|++++||
T Consensus        87 ~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~la  166 (326)
T 1smk_A           87 PRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVA  166 (326)
T ss_dssp             CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHH
Q 015172          252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS  331 (412)
Q Consensus       252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ai  331 (412)
                      +++|++|++|+++|+|+|+|++++|+||++.+..++++++|+++.+++++++++|++.|.|+|+++|++|+++++++++|
T Consensus       167 ~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~ai  246 (326)
T 1smk_A          167 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC  246 (326)
T ss_dssp             HHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999966899999999887666888899999999999999999987666899999999999999999


Q ss_pred             HhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172          332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ  408 (412)
Q Consensus       332 l~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~  408 (412)
                      +..+.+++.+++|++++++++++.||++||+||++|++++++  +++|+++|+++|++|+++|++.++++.+|++.+
T Consensus       247 ~~~~~~~~~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~--~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~~~~  321 (326)
T 1smk_A          247 LRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKKELAGSIEKGVSFIRSH  321 (326)
T ss_dssp             HHHHHTCSCEEEEEEEECCSSSSSEEEEEEEEETTEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHhCCCCeEEEEEeeccccCCceEEEEEEEEeCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333323678999997666677778999999999999999988  468999999999999999999999999998865

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=5.5e-61  Score=476.58  Aligned_cols=297  Identities=29%  Similarity=0.471  Sum_probs=264.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++||+|||+ |.||+++++.++..++. +|+|+|+++  +++.++||.|....  ... .+.+++|++ +++|||+||++
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~-~v~~t~d~~-a~~~aDvVIi~   80 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDF-KVRGTNDYK-DLENSDVVIVT   80 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCC-CEEEESCGG-GGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCc-EEEEcCCHH-HHCCCCEEEEc
Confidence            479999998 99999999999999987 999999997  57889999997421  112 233456785 89999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~  247 (412)
                      +|.|++|||+|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++||+||||+| .||++|++
T Consensus        81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~R~~  156 (321)
T 3p7m_A           81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFR  156 (321)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEEECHHHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHhcCCCHHHEEeeccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999    668888999999999999996 89999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      ++||+++|+++++|+++|+|+|| +++||+||+++    |..+      +++++++++.++++++|++|+++| |+|+|+
T Consensus       157 ~~la~~l~v~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gsa~  234 (321)
T 3p7m_A          157 TFLADELNVSVQQVQAYVMGGHG-DTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY  234 (321)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSG-GGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHhCcCHHHceEeeecCcC-CceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCChH
Confidence            99999999999999999999995 79999999986    3222      367789999999999999999976 568999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeeecC-C-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFVES-N-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      ||+|+++++++++|++|   +++++||+++.+ + |  ++++|||+||++|++|++++ +   ++|+++|+++|++|+++
T Consensus       235 ~~~a~a~~~~~~ail~~---~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~---l~L~~~E~~~l~~s~~~  307 (321)
T 3p7m_A          235 YAPAAAGIQMAESFLKD---KKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-E---VEISDKEREQLQVSINA  307 (321)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-C---CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC---CCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-C---CCCCHHHHHHHHHHHHH
Confidence            99999999999999998   568999985543 3 3  55779999999999999999 8   68999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 015172          394 LKASIEKGVAFAQ  406 (412)
Q Consensus       394 L~~~i~~~~~~~~  406 (412)
                      |++.++...+++.
T Consensus       308 l~~~~~~~~~~l~  320 (321)
T 3p7m_A          308 IKDLNKAAAEILA  320 (321)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998766654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2e-61  Score=480.44  Aligned_cols=291  Identities=23%  Similarity=0.321  Sum_probs=260.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      ..+||+|||+ |.||+++|+.++..|++++|+|+|+++  ++++++||.|....  ..+..+  +++|+ +++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~~~-a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGTYE-DCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EECGG-GGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCcHH-HhCCCCEEEE
Confidence            4689999998 999999999999999989999999987  68899999997311  223322  45675 8999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA  246 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~  246 (412)
                      ++|.|++|||+|+|++..|+++++++++.++++||+++++++|||+|    ++++++++.+++||+||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHH----HHHHHHHHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    67888889899999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCCC-------ChHHHHHHHHHHhhccchhhhcccCCCc
Q 015172          247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVSF-------TDEEVGDLTVRIQNAGTEVVEAKAGAGS  315 (412)
Q Consensus       247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~~-------~~~~~~~l~~~v~~~g~eii~~K~g~gs  315 (412)
                      +++||+++|+++++|+++|||||| +++||+||++++    ..++       +++++++|.++++++|++|+++|   |+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG-~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHG-DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCC-CceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC---CC
Confidence            999999999999999999999995 799999999863    2222       56678999999999999999998   89


Q ss_pred             hhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          316 ATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       316 t~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      |+|++|+|+++++++|+.+   +++++||+ |++++| .+++|||+||+||++|++++++   ++|+++|+++|++|+++
T Consensus       232 t~~a~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~---l~L~~~E~~~l~~s~~~  305 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHN---ENSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITE---LNLNEKEKEQFLHSAGV  305 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEECCEEEEESGGGCEEEEEECCEEEETTEEEEECC---CCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcC---CCcEEEEEEeeccccCCCceEEEEEEEEcCCceEEEec---CCCCHHHHHHHHHHHHH
Confidence            9999999999999999998   56899986 566655 2367999999999999999999   68999999999999999


Q ss_pred             HHHHHHH
Q 015172          394 LKASIEK  400 (412)
Q Consensus       394 L~~~i~~  400 (412)
                      |++.+++
T Consensus       306 l~~~~~~  312 (326)
T 3pqe_A          306 LKNILKP  312 (326)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9998865

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=1.2e-60  Score=468.78  Aligned_cols=284  Identities=25%  Similarity=0.389  Sum_probs=256.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||| |.||.++|+.|+..+++++|+|+|+++  ++++++|+.|..  .+... .+.+++|+ ++++|||+||+++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~-~i~~t~d~-~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYP-KIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCC-EEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCC-EEEEeCCH-HHhCCCCEEEECC
Confidence            79999999 999999999999999999999999998  677889999865  22222 34455675 5899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.||+|||+|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+|+||+||||+ |.||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~  153 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcch----HHHHHHHHhcCCCHHHEeecccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999    67888899999999999999 8999999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHH
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFV  328 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii  328 (412)
                      +|| ++|++|++ +++|||||| +++||+||++++.. .+  +++++.++++++|+||+++|   |+|+||+|+++++++
T Consensus       154 ~la-~l~v~~~~-~~~V~G~Hg-~t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~~~  224 (294)
T 1oju_A          154 RLY-NAGARNIR-RAWIIGEHG-DSMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHH-HTTCBSCC-CCCEEBCSS-TTCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHHHH
T ss_pred             HHH-HhCCCccC-ceEEEecCC-CceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHH
Confidence            999 99999999 999999995 79999999987532 22  68999999999999999998   899999999999999


Q ss_pred             HHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          329 ESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       329 ~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      ++|+++   +++++||+ |++++| .+++|||+||++|++|++ +++   ++|+++|+++|++|+++|++.+++
T Consensus       225 ~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~---l~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          225 KAVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VAD---IKLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECC---CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcC---CCeEEEEEecccccCCCCceEEEEEEEEeCCEEE-Eec---CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999998   56899998 666655 236799999999999999 988   689999999999999999998865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=7.4e-61  Score=474.47  Aligned_cols=293  Identities=29%  Similarity=0.470  Sum_probs=259.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC--c--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--N--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~--~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      .+||+|||+ |.||+++|+.++..|+ ++|+|+|++  +  .++.++||.|.... .....+.+++||+ +++|||+||+
T Consensus         8 ~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~-a~~~aDvVIi   84 (315)
T 3tl2_A            8 RKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYA-DTADSDVVVI   84 (315)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGG-GGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHH-HhCCCCEEEE
Confidence            469999998 9999999999999998 999999999  4  57888999987410 1112344567886 8999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA  246 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~  246 (412)
                      ++|.||+|||+|+|++.+|+++++++++++.++||+++++++|||+|    ++++++++.+|+|++||||+ |.||+.|+
T Consensus        85 aag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd----~~t~~~~k~sg~p~~rviG~gt~LD~~R~  160 (315)
T 3tl2_A           85 TAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARF  160 (315)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHH----HHHHHHHHhcCCChHHEEeeccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999    55666778888999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHH
Q 015172          247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA  321 (412)
Q Consensus       247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A  321 (412)
                      +++||+++|+++++|+++|||||| +++||+||+++    |..+ ++++++++|.++++++|++|++++ |+|+|+|++|
T Consensus       161 ~~~la~~lgv~~~~v~~~viG~Hg-~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~~a~a  238 (315)
T 3tl2_A          161 RTFIAQELNLSVKDITGFVLGGHG-DDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAYYAPA  238 (315)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBCSG-GGCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHH
T ss_pred             HHHHHHHhCcCHHHceeeEecCCC-CcceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHH
Confidence            999999999999999999999996 69999999986    4445 577788999999999999999942 2389999999


Q ss_pred             HHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172          322 YAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE  399 (412)
Q Consensus       322 ~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~  399 (412)
                      +++++++++|+++   +++++||+ |++++| .+++|||+||++|++|++++++   ++|+++|+++|++|+++|++.++
T Consensus       239 ~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~---l~L~~~E~~~l~~s~~~l~~~~~  312 (315)
T 3tl2_A          239 ASLVEMTEAILKD---QRRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIE---LELLADEKEALDRSVESVRNVMK  312 (315)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC---CCcEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998   56899997 566655 2467999999999999999999   68999999999999999998875


Q ss_pred             H
Q 015172          400 K  400 (412)
Q Consensus       400 ~  400 (412)
                      +
T Consensus       313 ~  313 (315)
T 3tl2_A          313 V  313 (315)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1e-60  Score=478.15  Aligned_cols=297  Identities=26%  Similarity=0.403  Sum_probs=253.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++||+||||+|+||+++|+.++..|+++||+|+|+++  ++++++||.|..++. . .+..++|++++++|||+||+++
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~-~-~i~~t~d~~~al~dADvVvita   84 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEG-L-NLTFTSDIKEALTDAKYIVSSG   84 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTT-C-CCEEESCHHHHHTTEEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCC-C-ceEEcCCHHHHhCCCCEEEEcc
Confidence            35799999977999999999999999989999999987  688999999986432 1 2334568877899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeE-EEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAF-IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~ai-viv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~  248 (412)
                      |.||+|||+|+|++.+|+++++++++.++++||+++ ++++|||+|    ++++++++.+|+||+||+|+|.||++|+++
T Consensus        85 G~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd----~~t~i~~k~sg~p~~rv~g~t~LDs~R~~~  160 (343)
T 3fi9_A           85 GAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQS  160 (343)
T ss_dssp             C-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHH----HHHHHHHHHHTCCGGGEEEECCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchH----HHHHHHHHHcCCCcceEEEecCcHHHHHHH
Confidence            999999999999999999999999999999999996 899999999    556667787789999999999999999999


Q ss_pred             HHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          249 FVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       249 ~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +||+++|++|++|+ ++|||||| +++||+||+++    |..+      +++++|++|.++++++|++|+++| | ++++
T Consensus       161 ~la~~l~v~~~~v~~~~ViGeHg-ds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-~ss~  237 (343)
T 3fi9_A          161 ELAKHFGIKQSLVTNTRTYGGHG-EQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-RSSF  237 (343)
T ss_dssp             HHHHHHTSCGGGEECCCEEESSG-GGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-SCCC
T ss_pred             HHHHHhCcCHHHcccceEEEcCC-CceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-CCcH
Confidence            99999999999997 89999997 69999999985    5433      467889999999999999999999 2 3556


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCCCCCCceeeeEEEcCCceEEeecCCCCC-CCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECV-FVESNLTELPFFASRVKLGRNGVESLISSDLQG-LTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~-Lse~E~~~L~~sa~~L~  395 (412)
                      +++|+++++++++|++|   ++.++|++ |+++++.+++|||+||+||++||+.+ +  +.+ |+++|+++|++|++.|+
T Consensus       238 ~s~A~a~~~~~~ail~d---~~~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~--~~~ll~~~E~~~l~~Sa~~l~  311 (343)
T 3fi9_A          238 QSPSYVSIEMIRAAMGG---EAFRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-D--INQLGNEAERAALKESYSHLA  311 (343)
T ss_dssp             HHHHHHHHHHHHHHTTS---SCCCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-C--GGGSSCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhC---CCceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-e--cCCCCCHHHHHHHHHHHHHHH
Confidence            79999999999999998   45688875 66655556789999999999999976 4  123 89999999999999999


Q ss_pred             HHHHHHHH
Q 015172          396 ASIEKGVA  403 (412)
Q Consensus       396 ~~i~~~~~  403 (412)
                      +.++....
T Consensus       312 ~~~~~~~~  319 (343)
T 3fi9_A          312 KLRDEVIA  319 (343)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987665

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=2.1e-60  Score=472.85  Aligned_cols=295  Identities=28%  Similarity=0.469  Sum_probs=256.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++||+|||| |.||.++++.++..++. +|+|+|+++  +++.++||.|....  ... .+.+++|| ++++|||+||++
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~-~v~~t~d~-~a~~~aDiVIia   82 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDA-KFTGANDY-AAIEGADVVIVT   82 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCC-CEEEESSG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCC-EEEEeCCH-HHHCCCCEEEEc
Confidence            479999998 99999999999999986 999999997  67888999987421  111 23445788 589999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~  247 (412)
                      +|.|++|||+|.|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++||+||||+| .||++|++
T Consensus        83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd----~~t~~~~k~sg~p~~rviG~~~~LD~~R~~  158 (324)
T 3gvi_A           83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFR  158 (324)
T ss_dssp             CSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcH----HHHHHHHHhcCCCHHHEEeecCccHHHHHH
Confidence            9999999999999999999999999999999999999999999999    567777888899999999996 79999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      ++||+++|+++++|+++|+|+|| +++||+||+++    |..+      +++++++++.++++++|+||+++| |+|+|+
T Consensus       159 ~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gkgsa~  236 (324)
T 3gvi_A          159 YFLSEEFNVSVEDVTVFVLGGHG-DSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF  236 (324)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCC
T ss_pred             HHHHHHhCcCHHHCeEEEEcCCC-CceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CCCcHH
Confidence            99999999999999999999996 79999999986    3322      367789999999999999999976 568999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECV-FVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      ||+|+++++++++|++|   +++++||+ +++++|. +++|||+||++|++|++++++   ++|+++|+++|++|+++|+
T Consensus       237 ~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~---l~L~~~E~~~l~~s~~~l~  310 (324)
T 3gvi_A          237 YAPAASAIQMAESYLKD---KKRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIE---IDLDKDEKAQFDKSVASVA  310 (324)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC---CCcEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998   46899998 4555552 357999999999999999999   6899999999999999999


Q ss_pred             HHHHHHHH
Q 015172          396 ASIEKGVA  403 (412)
Q Consensus       396 ~~i~~~~~  403 (412)
                      +.+++...
T Consensus       311 ~~~~~~~~  318 (324)
T 3gvi_A          311 GLCEACIG  318 (324)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99987553

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.1e-60  Score=474.68  Aligned_cols=283  Identities=20%  Similarity=0.264  Sum_probs=256.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++.+||+|||| |.||+++|+.++..|++++|+|+|+++  ++++++||.|.........+.+++||+ +++|||+||++
T Consensus        19 ~~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-~~~daDiVIit   96 (330)
T 3ldh_A           19 RSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-VSAGSKLVVIT   96 (330)
T ss_dssp             CCCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-SCSSCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-HhCCCCEEEEe
Confidence            35789999998 999999999999999999999999987  688999999974222233455678997 59999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.||+|||+|+|++.+|+++++++++++++++|+++++++|||+|    ++++++++.+|+||+||||+ |.||++|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvd----i~t~~~~k~sg~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccH----HHHHHHHHHhCCCHHHeecccCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    56777888889999999999 789999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHH-HHHHHHHhhccchhhhcccCCCchhhhHHH----
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEV-GDLTVRIQNAGTEVVEAKAGAGSATLSMAY----  322 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~-~~l~~~v~~~g~eii~~K~g~gst~~s~A~----  322 (412)
                      +++|+++|+++++|+++|||||| +++||+||+          +| +++.++++++|+||+++|   |+|+|++|+    
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~Hg-~t~vp~~S~----------~~~~~~~~~v~~~g~eii~~k---g~t~~a~a~~~~~  238 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQHG-DSVPSVWSG----------MWDAKLHKDVVDSAYEVIKLK---GYTSWAIGLVVSN  238 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSSS-TTCCEEEEE----------EEETTEEHHHHHCCCTTSTTC---HHHHHHHHHTTHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCCC-Cceeeechh----------hHHHHHHHHHHHHHHHHHHcc---CCcceeeeeeccC
Confidence            99999999999999999999996 799999998          34 788999999999999998   899999999    


Q ss_pred             -------------HHHHHHHHHHhccCCCCCeEEeee-ecCCC--CCCCceeeeEEEcCCceEE--eecCCCCCCCHHHH
Q 015172          323 -------------AAARFVESSLRALDGDGDVYECVF-VESNL--TELPFFASRVKLGRNGVES--LISSDLQGLTEYEQ  384 (412)
Q Consensus       323 -------------a~~~ii~ail~~~~g~~~v~~~s~-v~~~i--~~~~~~s~Pv~igk~Gv~~--v~~~~l~~Lse~E~  384 (412)
                                   ++++++++|+.+   +++++|||. ++++|  ++++|||+||++| +|+++  +++   ++|+++|+
T Consensus       239 ~~~~~~~~~~~~~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~---~~L~~~E~  311 (330)
T 3ldh_A          239 PVDVLTYVAWKGCSVADLAQTIMKD---LCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVK---MKLKPDEE  311 (330)
T ss_dssp             HHTTSSSCSCTHHHHHHHHHHHHHT---CCEEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCC---CCCCHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHcC---CCceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceec---CCCCHHHH
Confidence                         999999999998   568999984 55554  4577999999999 99999  999   78999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          385 KALEALKPELKASIEK  400 (412)
Q Consensus       385 ~~L~~sa~~L~~~i~~  400 (412)
                      ++|++|+++|++.++.
T Consensus       312 ~~l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          312 QQLQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=8.1e-58  Score=460.44  Aligned_cols=305  Identities=20%  Similarity=0.248  Sum_probs=255.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCe---EEEEecC--c----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSA---LHLYDVM--N----VKGVAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~e---v~L~Di~--~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      .++||+|+||+|.||+++++.++.++++++   |+|+|++  .    ++|+++||.|+.++..-.....+.+|+ +++||
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~-~~~da  109 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDV  109 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHH-HhCCC
Confidence            458999999779999999999999999887   7776654  3    589999999998654222122345675 89999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhh-CCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN-CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TT  240 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~  240 (412)
                      |+||+++|.||+|||+|+|++..|++|++++++.|.++ +|+++++++|||+|    ++++++++.++.+|+|+||. |.
T Consensus       110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD----~~t~ia~k~sg~~~~rvig~gT~  185 (375)
T 7mdh_A          110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPAKNFHALTR  185 (375)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchh----HHHHHHHHHcCCCCccEEEeeeh
Confidence            99999999999999999999999999999999999998 69999999999999    56777788777777788998 89


Q ss_pred             cchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCC----CCCCC-ChHHH--HHHHHHHhhccchhhhcccC
Q 015172          241 LDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTM----PSVSF-TDEEV--GDLTVRIQNAGTEVVEAKAG  312 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~~--~~l~~~v~~~g~eii~~K~g  312 (412)
                      ||++||+++||+++|++|++|+. +|||||| +++||+||+++    |..++ .+++|  +++.++++++|++|+++|  
T Consensus       186 LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHg-dt~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k--  262 (375)
T 7mdh_A          186 LDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW--  262 (375)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHhCcChhhcccceEEecCC-CceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc--
Confidence            99999999999999999999995 8999997 79999999986    65554 34455  689999999999999998  


Q ss_pred             CCchhhhHHHHHHHHHHHHH---hccCCCCCeEEeee-ecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          313 AGSATLSMAYAAARFVESSL---RALDGDGDVYECVF-VES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       313 ~gst~~s~A~a~~~ii~ail---~~~~g~~~v~~~s~-v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                       |.+++  |+++++++++|+   ++.+ +++++|||. +++ .|  ++++|||+||++|++|++++++  .++|+++|++
T Consensus       263 -G~ts~--a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~--~l~L~~~E~~  336 (375)
T 7mdh_A          263 -GRSSA--ASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELAT--DVSNDDFLWE  336 (375)
T ss_dssp             -SSCCH--HHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECC--CCCCCHHHHH
T ss_pred             -CCCch--HHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecC--CCCCCHHHHH
Confidence             55555  455666666665   3222 467999985 555 34  4678999999999999999995  2789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Q 015172          386 ALEALKPELKASIEKGVAFAQKQAV  410 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~~~~~~~~~~  410 (412)
                      +|++|+++|+++.+.+..+++.+..
T Consensus       337 ~l~~Sa~~L~~e~~~~~~~~~~~~~  361 (375)
T 7mdh_A          337 RIKKSEAELLAEKKCVAHLTGEGNA  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999998888876543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=3.1e-58  Score=454.49  Aligned_cols=294  Identities=25%  Similarity=0.414  Sum_probs=262.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ||+|||| |.||+++++.++..++ +||+|+|+++  +++.++|+.|....  ... .+++|+||+ +++|||+||+++|
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-~i~~t~d~~-a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDI-RISGSNSYE-DMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCC-CEEEESCGG-GGTTCSEEEECCS
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCe-EEEECCCHH-HhCCCCEEEEeCC
Confidence            7999998 9999999999999998 8999999997  67888999986311  112 244557884 8999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++|||+|+|++.+|++++++++++++++||++++|++|||+|    ++++++++.+++||+||||+ |+||+.|++++
T Consensus        77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~R~~~~  152 (308)
T 2d4a_B           77 IGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYY  152 (308)
T ss_dssp             CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCChhhEEEecccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    66888889899999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-CChHHHHHHHHHHhhccchhhhcccCCC-chhhhHHHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAG-SATLSMAYA  323 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~g-st~~s~A~a  323 (412)
                      +|+++|+++++|+++|+|+|| ++++|+||++..    ..+ +++++++++.+++++++++|++.|   | +++|++|.+
T Consensus       153 la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~s~~~~~a~a  228 (308)
T 2d4a_B          153 ISQKLGVSFKSVNAIVLGMHG-QKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR---GYSSNYGPAAG  228 (308)
T ss_dssp             HHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH---SSCCCHHHHHH
T ss_pred             HHHHhCcChhHeEEEEEeccC-CceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCC---CCccHHHHHHH
Confidence            999999999999999999996 799999999863    333 477789999999999999999988   7 999999999


Q ss_pred             HHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015172          324 AARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKG  401 (412)
Q Consensus       324 ~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~  401 (412)
                      +++++++|++|   ++.+++|+.. ++.| .++.|||+||++|++|++++++   ++|+++|+++|++|+++|++.+++.
T Consensus       229 ~~~~~~ai~~~---~~~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          229 LVLTVEAIKRD---SKRIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIE---LPLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhC---CCcEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecC---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998   4679998754 4444 1467999999999999999999   6899999999999999999999876


Q ss_pred             HHHHh
Q 015172          402 VAFAQ  406 (412)
Q Consensus       402 ~~~~~  406 (412)
                      ...++
T Consensus       303 ~~~l~  307 (308)
T 2d4a_B          303 PPQLR  307 (308)
T ss_dssp             CHHHH
T ss_pred             HHHhc
Confidence            55554

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1e-57  Score=452.61  Aligned_cols=296  Identities=24%  Similarity=0.368  Sum_probs=254.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+|||| |+||+++++.++..++++||+|+|+++  +++.++||.|.... ..+. ++. ++++ +++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-v~~-~~~~-a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK-IYS-GEYS-DCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE-EEE-CCGG-GGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeE-EEE-CCHH-HhCCCCEEEECC
Confidence            379999998 999999999999999999999999987  67889999997511 1222 222 4564 899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++|||+|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++|++||||+ |.||+.|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999    67888999999999999999 9999999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC------CCChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL  318 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~  318 (412)
                      ++|+++|+++++|+++|+|+|| ++++|+||++..    ..      .+++++++++.+++++++++|+++|   |+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHG-DSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSS-SSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccC-CceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC---CcchH
Confidence            9999999999999999999996 799999999763    21      2566778999999999999999988   89999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          319 SMAYAAARFVESSLRALDGDGDVYECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      ++|.++++++++|++|   ++.+++++.. ++.|  + +.|||+||+||++|++++++   ++|+++|+++|++|+++|+
T Consensus       233 ~~a~a~~~~~~ai~~~---~~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~l~  305 (318)
T 1ez4_A          233 GIGTALMRISKAILRD---ENAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQIIE---SPLSADELKKMQDSAATLK  305 (318)
T ss_dssp             HHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---CCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEcC---CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998   4678898754 4444  4 67999999999999999999   6899999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 015172          396 ASIEKGVAFAQK  407 (412)
Q Consensus       396 ~~i~~~~~~~~~  407 (412)
                      +.+++..++++.
T Consensus       306 ~~~~~~~~~~~~  317 (318)
T 1ez4_A          306 KVLNDGLAELEN  317 (318)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhc
Confidence            999998877653

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.3e-57  Score=454.35  Aligned_cols=304  Identities=22%  Similarity=0.345  Sum_probs=261.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCe-----EEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-----v~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +++||+|+||+|+||+++++.|+..+++++     |+|+|+++    ++|+++||.|+.++. +..+..+++..++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            358999999779999999999999999988     99999974    589999999986554 34444445544589999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCe-EEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDA-FIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TT  240 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~a-iviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~  240 (412)
                      |+||+++|.||+|||+|+|++..|+++++++++.+.+++|++ +++++|||+|    ++++++++.++.+|.++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd----~~t~~~~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchH----HHHHHHHHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999987 6999999999    56777788776566666776 99


Q ss_pred             cchHHHHHHHHHHcCCCCCCeeee-EEcccCCcccccccccCCCC-C-------C-CChHHH--HHHHHHHhhccchhhh
Q 015172          241 LDVVRANTFVAQKKNLKLIDVDVP-VVGGHAGITILPLLSKTMPS-V-------S-FTDEEV--GDLTVRIQNAGTEVVE  308 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~~~-ViG~hgg~~~vp~~S~~~p~-~-------~-~~~~~~--~~l~~~v~~~g~eii~  308 (412)
                      ||++|++++||+++|++|++|+++ |||||| +++||+||++++. .       + +.+++|  +++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHg-ds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHS-STQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCC-CCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 599997 5999999998631 1       1 223444  6899999999999999


Q ss_pred             cccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHH
Q 015172          309 AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQ  384 (412)
Q Consensus       309 ~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~  384 (412)
                      +|+  +++.|++|.++.+++++|+.+.+ +++++|||++ ++ +|  ++++|||+||++ ++|++++++  .++|+++|+
T Consensus       236 ~k~--~ssa~~~a~~~~~~~~~il~~~~-~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~--~l~L~~~E~  309 (333)
T 5mdh_A          236 ARK--LSSAMSAAKAICDHVRDIWFGTP-EGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVE--GLPINDFSR  309 (333)
T ss_dssp             HHS--SCCCHHHHHHHHHHHHHHHHCCC-TTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECC--CCCCCHHHH
T ss_pred             ccC--chHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcC--CCCCCHHHH
Confidence            872  57899999999999999999853 2469999865 44 44  467899999999 999999986  268999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 015172          385 KALEALKPELKASIEKGVAFAQK  407 (412)
Q Consensus       385 ~~L~~sa~~L~~~i~~~~~~~~~  407 (412)
                      ++|++|+++|+++++++++++++
T Consensus       310 ~~l~~sa~~L~~~~~~~~~~l~~  332 (333)
T 5mdh_A          310 EKMDLTAKELAEEKETAFEFLSS  332 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.9e-57  Score=452.15  Aligned_cols=297  Identities=24%  Similarity=0.379  Sum_probs=256.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +.+||+|||| |+||+++++.++..++++||+|+|+++  +++.++||.|.... ..+. ++. ++++ +++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~-i~~-~~~~-a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKK-IYS-AEYS-DAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCE-EEE-CCGG-GGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeE-EEE-CCHH-HhCCCCEEEEc
Confidence            4589999998 999999999999999999999999987  67889999997511 1222 222 4564 89999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.|++|||+|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++|++||||+ |.||+.|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC-------CCChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV-------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA  316 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~-------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst  316 (412)
                      +++|+++|+++++|+++|+|+|| ++++|+||++..    ..       .+++++++++.+++++++++|+++|   |++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k---G~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSS-TTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCChhheEEEEecccC-CceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcC---CCc
Confidence            99999999999999999999996 799999999763    21       2566678999999999999999988   899


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      +|++|+++++++++|++|   ++.+++++. +++.|  + +.|||+||+||++|++++++   ++|+++|+++|++|+++
T Consensus       236 ~~~~a~aa~~~~~ai~~~---~~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~  308 (326)
T 2zqz_A          236 FYGIATALARISKAILND---ENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILE---IPLTDHEEESMQKSASQ  308 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC---CCcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEec---CCCCHHHHHHHHHHHHH
Confidence            999999999999999998   467888874 44444  4 67999999999999999999   68999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 015172          394 LKASIEKGVAFAQK  407 (412)
Q Consensus       394 L~~~i~~~~~~~~~  407 (412)
                      |++.+++..++++.
T Consensus       309 l~~~~~~~~~~~~~  322 (326)
T 2zqz_A          309 LKKVLTDAFAKNDI  322 (326)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999988777663

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=4.7e-57  Score=446.42  Aligned_cols=290  Identities=23%  Similarity=0.325  Sum_probs=258.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||| |+||+++++.++..++++||+|+|+++  +++.++||.|.... ..+. ++. ++++ +++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~-v~~-~~~~-a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVW-VWA-GSYG-DLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCE-EEE-CCGG-GGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeE-EEE-CCHH-HhCCCCEEEECCC
Confidence            69999998 999999999999999999999999997  67889999997521 1222 222 4665 8999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++||++|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++|++||||+ |+||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    66888888889999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC--------CChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS--------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~--------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +|+++|+++++|+++|+|+|| ++++|+||++..    ..+        +++++++++.+++++++++|++.|   |+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHG-DSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH---SCCC
T ss_pred             HHHHhCcCHHHeEEEEecccC-CccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc---CCcH
Confidence            999999999999999999996 799999998752    212        466778999999999999999988   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      |++|+++++++++|++|   ++.+++++.. ++.|. ++.|||+||+||++|++++++   ++|+++|+++|++|+++|+
T Consensus       229 ~~~a~a~~~~~~ai~~~---~~~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~l~  302 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTD---EKGVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVY---PSLSPEERAALRRSAEILK  302 (310)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC---CCCEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcC---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998   4678898754 44341 457999999999999999999   6899999999999999999


Q ss_pred             HHHHHH
Q 015172          396 ASIEKG  401 (412)
Q Consensus       396 ~~i~~~  401 (412)
                      +.+++.
T Consensus       303 ~~~~~~  308 (310)
T 2xxj_A          303 EAAFAL  308 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998763

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=3.9e-57  Score=445.64  Aligned_cols=287  Identities=20%  Similarity=0.275  Sum_probs=245.0

Q ss_pred             CCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        88 ~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      .++++++||+|||| |.||.++++.++..+++++|+|+|+++ ..+.++|+.|...+ .+   ..++|| ++++|||+||
T Consensus         9 ~~~~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i---~~t~d~-~~l~~aD~Vi   82 (303)
T 2i6t_A            9 HENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NV---EISKDL-SASAHSKVVI   82 (303)
T ss_dssp             -----CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TE---EEESCG-GGGTTCSEEE
T ss_pred             ccCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-Ce---EEeCCH-HHHCCCCEEE
Confidence            34556789999998 999999999999999999999999987 67788899986443 23   335788 5899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHH
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVR  245 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R  245 (412)
                      +++|.| +|||+|+|++.+|++++++++++++++||++|++++|||+|    ++++++++.+++||+||||+ |+||+.|
T Consensus        83 ~aag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~----~~t~~~~~~~~~p~~rviG~gt~Ld~~R  157 (303)
T 2i6t_A           83 FTVNSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE----IMTYVTWKLSTFPANRVIGIGCNLDSQR  157 (303)
T ss_dssp             ECCCC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             EcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH----HHHHHHHHhcCCCHHHeeCCCCCchHHH
Confidence            999996 89999999999999999999999999999999999999999    78999999999999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHH
Q 015172          246 ANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA  325 (412)
Q Consensus       246 ~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~  325 (412)
                      +++++|+++|+++++|+++|+|+|| ++++|+||+..+   +   ..+++.+++++++++|++.|   |+++|++|++++
T Consensus       158 ~~~~la~~lgv~~~~v~~~v~G~Hg-~s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~~k---Gst~~~~a~a~~  227 (303)
T 2i6t_A          158 LQYIITNVLKAQTSGKEVWVIGEQG-EDKVLTWSGQEE---V---VSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVA  227 (303)
T ss_dssp             HHHHHHHTSCCTTGGGGEEEEBSCS-SSCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSSSC---CCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHeEEEEecCCC-CCcccccccccc---c---cHHHHHHHHHHHHHHHHHcc---CchHHhHHHHHH
Confidence            9999999999999999999999996 789999999532   2   22567888899999999977   899999999999


Q ss_pred             HHHHHHHhccCCCCCeEEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          326 RFVESSLRALDGDGDVYECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       326 ~ii~ail~~~~g~~~v~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      +++++|++|.   +.+++++.. ++.|  +++.||++||+||++|++++++  +++|+++|+++|++|++.|++.+++
T Consensus       228 ~i~~ai~~~~---~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~--~~~l~~~e~~~l~~s~~~l~~~~~~  300 (303)
T 2i6t_A          228 DMVDSIVNNK---KKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIK--TTLKEDTVTEKLQSSASSIHSLQQQ  300 (303)
T ss_dssp             HHHHHHHTTC---CEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC--BCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC---CcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999984   678898754 4444  5678999999999999999998  3479999999999999999998865

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=5.8e-57  Score=450.98  Aligned_cols=296  Identities=27%  Similarity=0.365  Sum_probs=238.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      ..||+|+||+|.+|+++++.|++.++++     +|+|+|+++    ++|.++||.|+.++.....+.+ +|++++++|||
T Consensus        24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-~~~~~a~~~ad  102 (345)
T 4h7p_A           24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-ADPRVAFDGVA  102 (345)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-SCHHHHTTTCS
T ss_pred             CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-CChHHHhCCCC
Confidence            4699999988999999999999988776     999999986    4788999999987764544444 45556899999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-ccc
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTL  241 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~L  241 (412)
                      +||+++|.||||||+|+||+..|++|++++++.|.++| |+++++++|||+|++++++   +++.+|+++.|+||. |.|
T Consensus       103 vVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g~~~~r~i~~~t~L  179 (345)
T 4h7p_A          103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQGKLNPRHVTAMTRL  179 (345)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTTCSCGGGEEECCHH
T ss_pred             EEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccCCCCcceeeeccch
Confidence            99999999999999999999999999999999999998 8999999999999655442   234667776666665 999


Q ss_pred             chHHHHHHHHHHcCCCCCCeeee-EEcccCCcccccccccCC----CCCC-CChHHH-HHHHHHHhhccchhhhcccCCC
Q 015172          242 DVVRANTFVAQKKNLKLIDVDVP-VVGGHAGITILPLLSKTM----PSVS-FTDEEV-GDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       242 ds~R~~~~la~~l~v~~~~V~~~-ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~-~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      |++|++++||+++|++|++|+.+ |||+|| +++||+||+++    |..+ ++++.+ +++.++++++|+||++.| | +
T Consensus       180 Ds~R~~~~la~~~~v~~~~V~~~~V~G~HG-~t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k-g-~  256 (345)
T 4h7p_A          180 DHNRALSLLARKAGVPVSQVRNVIIWGNHS-STQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR-G-L  256 (345)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEECCEEEBCSS-TTCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH-S-S
T ss_pred             hHHHHHHHHHHHHCcChhheecceeecCCC-CeEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC-C-C
Confidence            99999999999999999999865 567775 79999999986    4333 333333 579999999999999998 3 5


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec---CC--CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECVFVE---SN--LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEA  389 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~---~~--i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~  389 (412)
                      +++|++|+++++++++|+++.+  ...+.++++.   ++  ++++.|||+||+++ +|++++++  .++|+|+|+++|++
T Consensus       257 ss~~s~a~a~~~~~~~~l~~~~--~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~--~l~l~~~e~~~l~~  331 (345)
T 4h7p_A          257 SSAMSAAKAAVDHVHDWIHGTP--EGVYVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVS--GKLNGDLGKQRLAS  331 (345)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCC--TTCCEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECC--SCC-----CGGGHH
T ss_pred             cchhhHHHHHHHHHHHHhcCCC--CceEEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeC--CCCCCHHHHHHHHH
Confidence            7999999999999999999964  2233333332   33  36778999999997 68888887  37899999999999


Q ss_pred             HHHHHHHHHHH
Q 015172          390 LKPELKASIEK  400 (412)
Q Consensus       390 sa~~L~~~i~~  400 (412)
                      |+++|+++.+.
T Consensus       332 s~~~L~~E~~~  342 (345)
T 4h7p_A          332 TIAELQEERAQ  342 (345)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3e-56  Score=442.10  Aligned_cols=291  Identities=25%  Similarity=0.368  Sum_probs=249.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|||| |+||.++++.++..++++||+|+|+++  +++.+.||.|.... ..+ .++. ++++ +++|||+||+++
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~-~i~~-~~~~-a~~~aDvVii~~   82 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQM-SLYA-GDYS-DVKDCDVIVVTA   82 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCE-EEC---CGG-GGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCe-EEEE-CCHH-HhCCCCEEEEcC
Confidence            579999998 999999999999999999999999997  67889999997521 223 2333 4665 799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++||++|+|++.+|++++++++++|++++|+++++++|||++    ++++++++.+++|++||||+ |.||+.|+++
T Consensus        83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~~  158 (318)
T 1y6j_A           83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRY  158 (318)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHHH
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHcCCCHHHEeccCCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999    66888888889999999999 9999999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC--------ChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF--------TDEEVGDLTVRIQNAGTEVVEAKAGAGSA  316 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~--------~~~~~~~l~~~v~~~g~eii~~K~g~gst  316 (412)
                      ++|+++|+++++|+++|+|+|| ++++|+||++.    |..++        ++++++++.+++++++++|++.|   |++
T Consensus       159 ~la~~lgv~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t  234 (318)
T 1y6j_A          159 LLSEKLGVDVKNVHGYIIGEHG-DSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GAT  234 (318)
T ss_dssp             HHHTTTTCCTTTEECCEEBCSS-SSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHT---SCC
T ss_pred             HHHHHhCCCHHHeEEEEecccC-CcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCC---Ccc
Confidence            9999999999999999999996 79999999975    44343        34446899999999999999988   899


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      +|++|+++++++++|++|   ++.+++++.. ++.| .++.|||+||+||++|++++++   ++|+++|+++|++|+++|
T Consensus       235 ~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~l  308 (318)
T 1y6j_A          235 YYGIAVSINTIVETLLKN---QNTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQ---FNLTPEEEEALRFSAEQV  308 (318)
T ss_dssp             CHHHHHHHHHHHHHHHHT---CCCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCC---CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEec---CCCCHHHHHHHHHHHHHH
Confidence            999999999999999998   4678888754 4434 1567999999999999999999   689999999999999999


Q ss_pred             HHHHHHH
Q 015172          395 KASIEKG  401 (412)
Q Consensus       395 ~~~i~~~  401 (412)
                      ++.+++.
T Consensus       309 ~~~~~~~  315 (318)
T 1y6j_A          309 KKVLNEV  315 (318)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.4e-56  Score=442.76  Aligned_cols=292  Identities=27%  Similarity=0.446  Sum_probs=250.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|||| |.||.++++.++..|+++ |+|+|+++  +++.+.||.|.... .....++.++|+ ++++|||+||+++
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcC
Confidence            369999998 999999999999999765 99999987  67778899886311 001124455788 5899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++||++|+|++.+|++++++++++++++||+++++++|||+|    ++++++++.+++||+||||+ |+||+.|+++
T Consensus        79 g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~----~~t~~~~~~~~~~~~rviG~gt~LD~~r~~~  154 (309)
T 1ur5_A           79 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRT  154 (309)
T ss_dssp             CC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchH----HHHHHHHHHcCCCHHHEEECCcchHHHHHHH
Confidence            999999999999999999999999999999999999999999999    56888888889999999999 9999999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhh--cccCCCchhhhHH
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVE--AKAGAGSATLSMA  321 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~--~K~g~gst~~s~A  321 (412)
                      ++|+++|+++++|+++|+|+|| ++++|+||++.    |..+ +++++++++.+++++++++|++  .|   |+++|++|
T Consensus       155 ~la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~~~k---gs~~~~~a  230 (309)
T 1ur5_A          155 FIAMEAGVSVEDVQAMLMGGHG-DEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT---GSAYYAPA  230 (309)
T ss_dssp             HHHHHHTCCGGGEEECCEECSG-GGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHHSS---CCCCHHHH
T ss_pred             HHHHHhCCChhheeEEEecCcC-CceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhhccC---CCcHHHHH
Confidence            9999999999999999999996 79999999975    4444 4788899999999999999999  55   79999999


Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172          322 YAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE  399 (412)
Q Consensus       322 ~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~  399 (412)
                      .++++++++|++|   ++.+++|+. .++.| .++.|||+||+||++|++++++   ++|+++|+++|++|+++|++.++
T Consensus       231 ~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~~~  304 (309)
T 1ur5_A          231 AATAQMVEAVLKD---KKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILE---LPLNEEEMALLNASAKAVRATLD  304 (309)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CCcEEEEEEEecCccCCcceEEEEEEEEeCCceEEecC---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998   467999875 44444 1467999999999999999999   69999999999999999999987


Q ss_pred             HH
Q 015172          400 KG  401 (412)
Q Consensus       400 ~~  401 (412)
                      +.
T Consensus       305 ~~  306 (309)
T 1ur5_A          305 TL  306 (309)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2e-55  Score=433.39  Aligned_cols=288  Identities=28%  Similarity=0.413  Sum_probs=257.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec--Cc--hhhhhhhhcccCC-CCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MN--VKGVAADLSHCNT-PSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di--~~--~~g~~~dL~~~~~-~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      |||+|+||+|++|+++++.|+..++.+|++|+|+  ++  +++.+.||.|... ...+. ++. ++++ +++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~-v~~-~~~~-a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTR-VRQ-GGYE-DTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCE-EEE-CCGG-GGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcE-EEe-CCHH-HhCCCCEEEEc
Confidence            6999999669999999999999998889999999  76  4677789988642 11222 222 3564 89999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.|++||++|+|++..|+++++++++++++++|+++++++|||+|    ++++++++.+++|++||||+ |+||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~----~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC-ChHHHHHHHHHHhhccchhhhcccCCCchhhhHHH
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY  322 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~  322 (412)
                      +++|+++|+++++|+++|+|+|| ++++|+||++.    |  ++ ++++|+++.+++++++++|++.|   |+++|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~p--~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~~~~a~  227 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHG-DAQVPVFSKVSVDGTD--PEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPAR  227 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTBC--CCCCHHHHHHHHHHHHHHHHHHHTTT---SSCCHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCC-CccccCCcccccCCcC--ccCCHHHHHHHHHHHHHHhHHHHhcC---CChHHHHHH
Confidence            99999999999999999999996 79999999975    5  54 78889999999999999999987   899999999


Q ss_pred             HHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          323 AAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       323 a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      ++++++++|++|   ++.+++++.. +++| .++.|||+||+||++|++++++   ++|+++|+++|++|+++|++.+++
T Consensus       228 a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~~~~  301 (303)
T 1o6z_A          228 GVAHMVEAILHD---TGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVE---WDLDDYEQDLMADAAEKLSDQYDK  301 (303)
T ss_dssp             HHHHHHHHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCCEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecC---CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998   4678998754 4444 1457999999999999999999   699999999999999999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=7.1e-56  Score=439.21  Aligned_cols=290  Identities=25%  Similarity=0.366  Sum_probs=256.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++||+|||| |.+|.++++.++.++++++|+|+|+++  +++.+.|+.|....  ..+. ++. +++ ++++|||+||++
T Consensus         6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~-v~~-~~~-~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVR-VKA-GEY-SDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCE-EEE-CCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeE-EEe-CCH-HHhCCCCEEEEC
Confidence            479999998 999999999999999889999999987  67778898886311  1222 332 455 489999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      +|.|++||++|+|++.+|++++++++++|+++||+++++++|||+|    ++++++++.+++|++||||+ |.||+.|++
T Consensus        82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~lD~~r~~  157 (317)
T 3d0o_A           82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFR  157 (317)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHhCCCHHHEEecCccccHHHHH
Confidence            9999999999999999999999999999999999999999999999    67888999999999999999 999999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +++|+++|+++++|+++|+|+|| ++++|+||++..    ..      .+++++++++.+++++++++|+++|   |+++
T Consensus       158 ~~la~~l~v~~~~v~~~v~G~HG-~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~  233 (317)
T 3d0o_A          158 LLLSEAFDVAPRSVDAQIIGEHG-DTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY  233 (317)
T ss_dssp             HHHHHHHTSCGGGCBCCEEBCSS-TTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHH---SCCC
T ss_pred             HHHHHHhCcChhhEEEEEEecCC-CCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCC---CCch
Confidence            99999999999999999999996 799999999763    21      1455568999999999999999988   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL  394 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L  394 (412)
                      |++|.++++++++|++|   ++.+++++.. ++.|  + +.|||+||+||++|++++++   ++|+++|+++|++|+++|
T Consensus       234 ~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l  306 (317)
T 3d0o_A          234 YGVAMGLARITEAIFRN---EDAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVVE---IPLNDEEQSKFAHSAKTL  306 (317)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEec---CCCCHHHHHHHHHHHHHH
Confidence            99999999999999998   4678998754 4444  4 67999999999999999999   689999999999999999


Q ss_pred             HHHHHHH
Q 015172          395 KASIEKG  401 (412)
Q Consensus       395 ~~~i~~~  401 (412)
                      ++.+++.
T Consensus       307 ~~~~~~~  313 (317)
T 3d0o_A          307 KDIMAEA  313 (317)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9998764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.3e-55  Score=437.12  Aligned_cols=292  Identities=22%  Similarity=0.337  Sum_probs=257.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCCCcEEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      +++||+|||| |.||+++++.++..+++++|+|+|+++  .++.++|+.|.....  ... ++ +++++ +++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~-i~-~~~~~-al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVD-IW-HGDYD-DCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCE-EE-ECCGG-GTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeE-EE-cCcHH-HhCCCCEEEE
Confidence            3579999998 999999999999999889999999997  567788998864211  232 22 24564 8999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA  246 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~  246 (412)
                      ++|.|++||++|+|++.+|.++++++++++++++|+++++++|||+|    ++++++++.+++||+||||+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~----~~~~~~~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchH----HHHHHHHHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999    66888888889999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-------CChHHHHHHHHHHhhccchhhhcccCCCc
Q 015172          247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-------FTDEEVGDLTVRIQNAGTEVVEAKAGAGS  315 (412)
Q Consensus       247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-------~~~~~~~~l~~~v~~~g~eii~~K~g~gs  315 (412)
                      ++++|+++|+++++|+++|+|+|| ++++|+||++.    |..+       +++++++++.+++++++++|++.|   |+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHG-DTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccC-CceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhcc---CC
Confidence            999999999999999999999996 79999999875    4433       345567899999999999999988   89


Q ss_pred             hhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          316 ATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       316 t~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      ++|++|.++++++++|++|   ++.+++++. +++.| .++.|||+||+||++|++++++   ++|+++|+++|++|+++
T Consensus       233 ~~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~  306 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHN---ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIE---IELNDDEKNRFHHSAAT  306 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhC---CCcEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEcc---CCCCHHHHHHHHHHHHH
Confidence            9999999999999999998   467888875 45545 1467999999999999999999   68999999999999999


Q ss_pred             HHHHHHHH
Q 015172          394 LKASIEKG  401 (412)
Q Consensus       394 L~~~i~~~  401 (412)
                      |++.+++.
T Consensus       307 l~~~~~~~  314 (316)
T 1ldn_A          307 LKSVLARA  314 (316)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            99998763

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=7.6e-55  Score=432.76  Aligned_cols=292  Identities=29%  Similarity=0.426  Sum_probs=256.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|||| |.||.++++.++..|+++ |+|+|+++  +++.+.++.+.... .....++.++|+ ++++|||+||+++
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            579999998 999999999999999865 99999987  56777788775211 001134456788 5899999999999


Q ss_pred             CCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccch
Q 015172          170 GVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDV  243 (412)
Q Consensus       170 g~p~k~g~~-----r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds  243 (412)
                      |.|+++|++     |.|++.+|++++++++++|+++||++++|++|||++    ++++++++.+++||+||||+ |.||+
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~----~~t~~~~~~~g~~~~rviG~gt~ld~  156 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDT  156 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECCHHHHH
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChH----HHHHHHHHhcCCChHHEEeccCcccH
Confidence            999999999     999999999999999999999999999999999999    56888888888999999999 68999


Q ss_pred             HHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC------CCChHHHHHHHHHHhhccchhhhcccCC
Q 015172          244 VRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV------SFTDEEVGDLTVRIQNAGTEVVEAKAGA  313 (412)
Q Consensus       244 ~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~  313 (412)
                      +|++++||+++|+++++|+++|+|+|| ++++|+||++..    ..      .+++++++++.+++++++++|++.|   
T Consensus       157 ~R~~~~la~~lgv~~~~v~~~v~G~HG-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---  232 (322)
T 1t2d_A          157 SRLKYYISQKLNVCPRDVNAHIVGAHG-NKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH---  232 (322)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHT---
T ss_pred             HHHHHHHHHHhCCCHHHeEEEEEcCCC-CcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcc---
Confidence            999999999999999999999999996 799999998752    21      1466778999999999999999987   


Q ss_pred             CchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          314 GSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       314 gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      |+++|++|.++++++++|++|   ++.+++|+.. ++.|. ++.||++||+||++|++++++   ++|+++|+++|++|+
T Consensus       233 gs~~~~~a~a~~~~~~ai~~~---~~~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~  306 (322)
T 1t2d_A          233 ASPYVAPAAAIIEMAESYLKD---LKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE---LQLNSEEKAKFDEAI  306 (322)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhC---CCCEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCC---CCCCHHHHHHHHHHH
Confidence            799999999999999999998   4689998754 44453 467999999999999999999   789999999999999


Q ss_pred             HHHHHHHHHH
Q 015172          392 PELKASIEKG  401 (412)
Q Consensus       392 ~~L~~~i~~~  401 (412)
                      ++|++.++.+
T Consensus       307 ~~L~~~~~~~  316 (322)
T 1t2d_A          307 AETKRMKALA  316 (322)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=2.5e-54  Score=427.21  Aligned_cols=292  Identities=26%  Similarity=0.425  Sum_probs=252.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec--Cc--hhhhhhhhcccCCC--CceeeecCCCc-HHhhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MN--VKGVAADLSHCNTP--SQVLDFTGPEE-LASALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di--~~--~~g~~~dL~~~~~~--~~v~~i~~t~d-~~~al~~aDiVI  166 (412)
                      |||+|+||+|++|+++++.|+.+++.++++|+|+  ++  ..+.++|+.|....  ..+ .++.++| +.++++|||+||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~-~i~~~~d~l~~al~gaD~Vi   79 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDA-NIYVESDENLRIIDESDVVI   79 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCC-EEEEEETTCGGGGTTCSEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCe-EEEeCCcchHHHhCCCCEEE
Confidence            6999999999999999999999998889999999  65  56778899886411  112 2333333 445899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHH
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVR  245 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R  245 (412)
                      +++|.|+++|++|.|++..|+++++++++.+++++ +++++++|||+|    ++++++++.+++||+||||+ |.||+.|
T Consensus        80 ~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~r  154 (313)
T 1hye_A           80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLR  154 (313)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHH----HHHHHHHHHHCCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHH----HHHHHHHHhhCcChhcEEEeCccHHHHH
Confidence            99999999999999999999999999999999999 999999999999    66888888899999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC---ChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172          246 ANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF---TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL  318 (412)
Q Consensus       246 ~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~---~~~~~~~l~~~v~~~g~eii~~K~g~gst~~  318 (412)
                      +++++|+++|+++++|+++|+|+|| ++++|+||++.    |..++   ++++++++.+++++++++|+++|   |+++|
T Consensus       155 ~~~~la~~lgv~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---gs~~~  230 (313)
T 1hye_A          155 FKVAIAKFFGVHIDEVRTRIIGEHG-DSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEF  230 (313)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------C
T ss_pred             HHHHHHHHhCcCHHHeEEEEeeccC-CcccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecCC---CCcHH
Confidence            9999999999999999999999996 79999999976    44443   56678999999999999999987   79999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC--CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          319 SMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT--ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~--~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      ++|+++++++++|++|   ++.+++++.. ++.|+  ++.|||+||+||++|++++++   ++|+++|+++|++|+++|+
T Consensus       231 ~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~  304 (313)
T 1hye_A          231 GPAAAILNVVRCIVNN---EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVS---IELDKDEIIAFRKSAEIIK  304 (313)
T ss_dssp             CHHHHHHHHHHHHHTT---CCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC---CCeEEEEEEeecceecCccceEEEEEEEEeCCeeEEecC---CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998   4678888754 55452  367999999999999999999   6899999999999999999


Q ss_pred             HHHHHH
Q 015172          396 ASIEKG  401 (412)
Q Consensus       396 ~~i~~~  401 (412)
                      +.+++.
T Consensus       305 ~~~~~~  310 (313)
T 1hye_A          305 KYCEEV  310 (313)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.6e-54  Score=431.37  Aligned_cols=294  Identities=29%  Similarity=0.479  Sum_probs=255.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +||+|||| |.||.++|+.++..|++ +|+|+|+++  +++.+.++.|.... .....++.++|+ +++++||+||+++|
T Consensus        15 ~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           15 KKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            69999998 99999999999999986 499999997  56666777765311 011234556788 58999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++||++|.|++.+|++++++++++++++||+++++++|||++    ++++++++.+|+||+||||+ |.||++|++++
T Consensus        92 ~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~t~~~~~~~~~~~~rviG~~t~Ld~~R~~~~  167 (328)
T 2hjr_A           92 VPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCN  167 (328)
T ss_dssp             CCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHHHHHH
T ss_pred             CCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHhcCCChhhEEEeCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    56888888889999999999 58999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchhhh
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS  319 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s  319 (412)
                      +|+++|+++++|+++|+|+|| ++++|+||++.    |..+      +++++++++.++++++|++|++.. ++|+++|+
T Consensus       168 la~~lgv~~~~v~~~v~G~Hg-~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs~~~~  245 (328)
T 2hjr_A          168 LSRALGVKPSDVSAIVVGGHG-DEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFYA  245 (328)
T ss_dssp             HHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCCHH
T ss_pred             HHHHhCCCHHHeeEEEecCCC-CceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCchHHH
Confidence            999999999999999999997 79999999975    3222      466778999999999999999941 22899999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          320 MAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       320 ~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      +|.++++++++|++|   ++.+++++.. ++.|. ++.||++||++|++|++++++   ++|+++|+++|++|+++|++.
T Consensus       246 ~a~a~~~i~~ai~~~---~~~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~---~~L~~~e~~~l~~s~~~l~~~  319 (328)
T 2hjr_A          246 PAASAVAMAQAYLKD---SKSVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVI---VNLSDDEKSLFSKSVESIQNL  319 (328)
T ss_dssp             HHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CCcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecC---CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999998   4689998754 44442 467999999999999999998   689999999999999999999


Q ss_pred             HHHHH
Q 015172          398 IEKGV  402 (412)
Q Consensus       398 i~~~~  402 (412)
                      ++++.
T Consensus       320 ~~~~~  324 (328)
T 2hjr_A          320 VQDLK  324 (328)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=8.4e-54  Score=426.73  Aligned_cols=295  Identities=26%  Similarity=0.439  Sum_probs=257.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      +++|||+|||| |.||.++|+.|+..|++ +|+|+|+++  +++.+.++.|.... .....+..|+|+++++++||+||+
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~   84 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV   84 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence            34589999998 99999999999999875 499999997  55556777664211 011234456899878999999999


Q ss_pred             cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-ccc
Q 015172          168 PAGVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTL  241 (412)
Q Consensus       168 aag~p~k~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~L  241 (412)
                      ++|.|+++|+     +|.|++.+|++++++++++|+++||+++++++|||++    ++++++++.+++||+||||+ |.|
T Consensus        85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~----~~t~~~~~~~~~~~~rviG~gt~L  160 (331)
T 1pzg_A           85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACML  160 (331)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHH
T ss_pred             ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchH----HHHHHHHHhcCCChhcEEeccchH
Confidence            9999999999     9999999999999999999999999999999999999    56888888889999999999 689


Q ss_pred             chHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhh--c
Q 015172          242 DVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVE--A  309 (412)
Q Consensus       242 ds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~--~  309 (412)
                      |++|++++||+++|+++++|+++|+|+|| +++||+||+++    |..+      +++++++++.++++++|++|++  +
T Consensus       161 D~~R~~~~la~~lgv~~~~v~~~v~G~Hg-~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~~  239 (331)
T 1pzg_A          161 DSGRFRRYVADALSVSPRDVQATVIGTHG-DCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFLG  239 (331)
T ss_dssp             HHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHceEEEecCCC-CCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhhc
Confidence            99999999999999999999999999996 79999999975    3222      4667788999999999999999  5


Q ss_pred             ccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          310 KAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       310 K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                      |   |+++|++|.++++++++|++|   ++.+++|+.. ++.|. ++.||++||++|++|++++++   ++|+++|+++|
T Consensus       240 k---gst~~~~a~a~~~ii~ai~~~---~~~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~---~~L~~~e~~~l  310 (331)
T 1pzg_A          240 Q---GSAYYAPAASAVAMATSFLND---EKRVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIE---LELNEEEKKQF  310 (331)
T ss_dssp             S---SCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHH
T ss_pred             C---CCccchHHHHHHHHHHHHHhC---CCcEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecC---CCCCHHHHHHH
Confidence            5   799999999999999999998   4689998755 44341 467999999999999999998   68999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKG  401 (412)
Q Consensus       388 ~~sa~~L~~~i~~~  401 (412)
                      ++|+++|++.+++.
T Consensus       311 ~~s~~~l~~~~~~~  324 (331)
T 1pzg_A          311 QKSVDDVMALNKAV  324 (331)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=2.1e-53  Score=419.02  Aligned_cols=285  Identities=26%  Similarity=0.337  Sum_probs=226.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||| |.||.++++.++..|++++|+|+|+++  .++.+.|+.|.... ... .++. ++++ ++++||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~-~i~~-~~~~-a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGT-RVWH-GGHS-ELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCC-EEEE-ECGG-GGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCe-EEEE-CCHH-HhCCCCEEEEcCC
Confidence            69999998 999999999999999989999999997  56778888876521 112 2222 4675 8999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++||++|+|++.+|+++++++++++++++|+++++++|||++    ++++++++.+  ||+||||+ |+||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~----~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHH----HHHHHHHHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchH----HHHHHHHHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    5577777774  99999999 99999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC--------CChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS--------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~--------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +|+++|+++++|+++|+|+|| ++++|+||++..    ..+        +++++++++.+++++++++|+++|   |+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~k---g~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHG-DSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGK---RATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSS-TTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCC-CceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhcc---CCcH
Confidence            999999999999999999996 799999999863    212        466678999999999999999987   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      |++|.++++++++|++|   ++++++++....+| + .|||+||+||++|++++++   ++|+++|+++|++|+++|++.
T Consensus       227 ~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~gy-g-~~~~~P~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~  298 (304)
T 2v6b_A          227 YGIGAALARITEAVLRD---RRAVLTVSAPTPEY-G-VSLSLPRVVGRQGVLSTLH---PKLTGDEQQKLEQSAGVLRGF  298 (304)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCEEEEEEEEETTT-T-EEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhC---CCcEEEEEEEECCc-C-cEEEEEEEEeCCeeEEEcC---CCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998   56789987554336 4 8999999999999999999   689999999999999999998


Q ss_pred             HHH
Q 015172          398 IEK  400 (412)
Q Consensus       398 i~~  400 (412)
                      +++
T Consensus       299 ~~~  301 (304)
T 2v6b_A          299 KQQ  301 (304)
T ss_dssp             ---
T ss_pred             HHH
Confidence            875

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=2e-52  Score=412.90  Aligned_cols=293  Identities=29%  Similarity=0.467  Sum_probs=254.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||| |.||.++|+.++..++..+|+|+|+++  .++...|+.|.... .....+..++|++ ++++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~-~l~~aDvViiav~   78 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSDIVIITAG   78 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHH-HHCCCCEEEEeCC
Confidence            69999998 999999999999876556999999987  45666666664210 0011244567887 4999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF  249 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~  249 (412)
                      .|++||++|.|++.+|+++++++++.+++++|+++++++|||++    ++++++++.+++||+||||+ |+||+.|++++
T Consensus        79 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~----~~~~~~~~~~~~~~~rviG~gt~ld~~r~~~~  154 (310)
T 1guz_A           79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSF  154 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEECHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchH----HHHHHHHHhcCCChHHEEECCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    45777888889999999999 99999999999


Q ss_pred             HHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-CChHHHHHHHHHHhhccchhhh--cccCCCchhhhHHH
Q 015172          250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-FTDEEVGDLTVRIQNAGTEVVE--AKAGAGSATLSMAY  322 (412)
Q Consensus       250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-~~~~~~~~l~~~v~~~g~eii~--~K~g~gst~~s~A~  322 (412)
                      +|+++|+++++|+++|+|+|| ++++|+||++..    ..+ +++++++++.+++++++++|++  .|   |+++|++|+
T Consensus       155 la~~l~v~~~~v~~~v~G~Hg-~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~~k---gs~~~~~a~  230 (310)
T 1guz_A          155 IAMELGVSMQDINACVLGGHG-DAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ---GSAFYAPAS  230 (310)
T ss_dssp             HHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHHSS---SCCCHHHHH
T ss_pred             HHHHhCCCHHHeEEEEEcccC-CcEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhhcCC---CCcHHHHHH
Confidence            999999999999999999996 799999999863    333 4777899999999999999999  55   899999999


Q ss_pred             HHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172          323 AAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK  400 (412)
Q Consensus       323 a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~  400 (412)
                      ++++++++|++|   ++.+++|+.. ++.| .++.|||+||++|++|++++++   ++|+++|+++|++|+++|++.+++
T Consensus       231 a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~~~~  304 (310)
T 1guz_A          231 SVVEMVESIVLD---RKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYE---INLDQADLDLLQKSAKIVDENCKM  304 (310)
T ss_dssp             HHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC---CCcEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcC---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998   4679998754 4444 1467999999999999999999   689999999999999999999876


Q ss_pred             HH
Q 015172          401 GV  402 (412)
Q Consensus       401 ~~  402 (412)
                      ..
T Consensus       305 ~~  306 (310)
T 1guz_A          305 LE  306 (310)
T ss_dssp             C-
T ss_pred             Hh
Confidence            43

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.2e-51  Score=410.61  Aligned_cols=301  Identities=22%  Similarity=0.304  Sum_probs=258.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCC-----CeEEEEecC----c--hhhhhhhhcccCCCCceeeecCCCcHHhhcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLV-----SALHLYDVM----N--VKGVAADLSHCNTPSQVLDFTGPEELASALK  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~-----~ev~L~Di~----~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~  160 (412)
                      ++|||+|+||+|++|+++++.|+..+++     .+|+|+|++    +  ..+.++||.|...+. ...+..++|+.++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            3589999998899999999999998876     399999998    5  567889999964443 345555678778999


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV  238 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl  238 (412)
                      |||+||+++|.|+++|++|.|++..|++++++++++++++| |+++|+++|||+|    ++++++++.+ |+|++||+|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~----~~t~~~~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN----TNAYIAMKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH----HHHHHHHHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999998 9999999999999    5677778776 8999999999


Q ss_pred             cccchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCCCCC----C-CChHH--HHHHHHHHhhccchhhhcc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTMPSV----S-FTDEE--VGDLTVRIQNAGTEVVEAK  310 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~p~~----~-~~~~~--~~~l~~~v~~~g~eii~~K  310 (412)
                      |.||+.|+++++|+++|+++++|+. +|+|+|| ++++|+||++.+..    + +++++  .+++.+++++++++|+++|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg-~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS-PTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS-TTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC-CcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999995 6899997 79999999986432    2 23334  4789999999999999998


Q ss_pred             cCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC---CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN---LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       311 ~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~---i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                       | .+++++.|+++++++++|+++.  ++++++|+....+   ++++.|||+||+| ++|++++++ + ++|+++|+++|
T Consensus       238 -g-~~~~~~~a~a~~~~~~ai~~~~--~~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~-~-~~l~~~e~~~l  310 (329)
T 1b8p_A          238 -G-VSSAASAANAAIDHIHDWVLGT--AGKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQ-G-LSIDAFSQERI  310 (329)
T ss_dssp             -S-SCCHHHHHHHHHHHHHHHHHCC--TTCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECC-C-CCCCHHHHHHH
T ss_pred             -C-CChHHHHHHHHHHHHHHHhcCC--CCcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecC-C-CCCCHHHHHHH
Confidence             3 2344556779999999999985  3568999865443   3577899999999 999999986 2 58999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKGVAFA  405 (412)
Q Consensus       388 ~~sa~~L~~~i~~~~~~~  405 (412)
                      ++|+++|++.++.+.+++
T Consensus       311 ~~s~~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          311 NVTLNELLEEQNGVQHLL  328 (329)
T ss_dssp             HHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999877654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.5e-50  Score=398.41  Aligned_cols=292  Identities=29%  Similarity=0.445  Sum_probs=252.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||+ |.||.+++..++..|+.++|+|+|+++  ..+...++.+.........+.. +|++ ++++||+||++++.
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~~-~~~~aDvViiav~~   77 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDYA-DLKGSDVVIVAAGV   77 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCGG-GGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCHH-HhCCCCEEEEccCC
Confidence            69999998 999999999999988888999999986  4455555554321000112222 3664 79999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~l  250 (412)
                      |++||++|.|++.+|++++++++++|++++|+++++++|||++    ++++++++.+++||+||||+ |.||+.|+++++
T Consensus        78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~l  153 (319)
T 1a5z_A           78 PQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLI  153 (319)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHH----HHHHHHHHHhCCChhhEEeeCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    55778888778999999999 789999999999


Q ss_pred             HHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-------CChHHHHHHHHHHhhccchhhhcccCCCchhhh
Q 015172          251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS  319 (412)
Q Consensus       251 a~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s  319 (412)
                      |+++|+++++|+++|+|+|| ++++|+||+++.    ..+       +++++++++.++++++++++++.|   |+++|+
T Consensus       154 a~~lgv~~~~v~~~v~G~hg-~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~~~  229 (319)
T 1a5z_A          154 AQHCGFSPRSVHVYVIGEHG-DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHYA  229 (319)
T ss_dssp             HHHHTCCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH---SCCCHH
T ss_pred             HHHhCcCHHHceEEEEeCCC-CCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC---CchHHH
Confidence            99999999999999999995 799999999752    111       466678999999999999999988   899999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCeEEeeeec-CCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          320 MAYAAARFVESSLRALDGDGDVYECVFVE-SNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       320 ~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      +|.++++++++|++|   ++.+++++... +.| .++.||++||+||++|++++++   ++|+++|+++|++|+++|++.
T Consensus       230 ~a~a~~~~~~ai~~~---~~~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~---~~L~~~e~~~l~~s~~~l~~~  303 (319)
T 1a5z_A          230 IALAVADIVESIFFD---EKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILE---LNLNEEELEAFRKSASILKNA  303 (319)
T ss_dssp             HHHHHHHHHHHHHTT---CCEEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC---CCCEEEEEEEecCccCccceEEEEEEEEeCCceEEEec---CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999998   46789987654 434 1567999999999999999999   689999999999999999999


Q ss_pred             HHHHH
Q 015172          398 IEKGV  402 (412)
Q Consensus       398 i~~~~  402 (412)
                      ++++.
T Consensus       304 ~~~~~  308 (319)
T 1a5z_A          304 INEIT  308 (319)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.1e-49  Score=390.65  Aligned_cols=291  Identities=19%  Similarity=0.244  Sum_probs=248.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ||||+|||+ |.||.+++..|+..|+..+|+|+|+++  ..+.+.++.|..  .+..+...  ++|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            479999998 999999999999988656999999987  455555665442  11112221  2577 589999999999


Q ss_pred             CCCCCC----CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccch
Q 015172          169 AGVPRK----PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDV  243 (412)
Q Consensus       169 ag~p~k----~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds  243 (412)
                      ++.|++    ||++|+|++.+|+++++++++.+++++|+++++++|||++    ++++++++.+++|++||+|+ |+||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH----HHHHHHHHhcCCCHHHEeecCccchH
Confidence            999999    9999999999999999999999999999999999999999    56888888888999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC---CChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172          244 VRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS---FTDEEVGDLTVRIQNAGTEVVEAKAGAGSA  316 (412)
Q Consensus       244 ~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~---~~~~~~~~l~~~v~~~g~eii~~K~g~gst  316 (412)
                      .|+++++++++++++++|+++++|+|| ++++|+||++.    |..+   +++++|+++.+++++++++|++.|   |++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHG-NSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTT-TTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCC-CcEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCc
Confidence            999999999999999999999999995 79999999875    3333   356679999999999999999998   789


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172          317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA  396 (412)
Q Consensus       317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~  396 (412)
                      +|++|.++++++++|++|   ++.+++|+....+  ++.|+++||++|++|++++++   ++|+++|+++|++|+++|++
T Consensus       229 ~~~~a~a~~~~~~ai~~~---~~~~~~~~~~~~g--~~~~~~vP~~i~~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~  300 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMAD---AHAELVVSNRRDD--MGMYLSYPAIIGRDGVLAETT---LDLTTDEQEKLLQSRDYIQQ  300 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEECTT--TCSEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcC---CCcEEEEEEEECC--CCeEEEEEEEEeCCceEEEeC---CCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998   4678998766555  567999999999999999998   68999999999999999999


Q ss_pred             HHHHHHH
Q 015172          397 SIEKGVA  403 (412)
Q Consensus       397 ~i~~~~~  403 (412)
                      .+++..+
T Consensus       301 ~~~~~~~  307 (309)
T 1hyh_A          301 RFDEIVD  307 (309)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9987654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=4.1e-48  Score=382.82  Aligned_cols=294  Identities=28%  Similarity=0.445  Sum_probs=250.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|||| |.||.++|..++..|+. +|+|+|+++  ..+...|+.+.... .....+..++|+ +++++||+||+++
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~av   80 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITA   80 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            479999998 99999999999999874 699999987  44445566554210 001123345788 5899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT  248 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~  248 (412)
                      |.|++||++|+|++.+|+++++++++++++++|+++++++|||++    ++++++++.+++||+||+|+ |.+|+.|+++
T Consensus        81 g~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~  156 (317)
T 2ewd_A           81 SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRT  156 (317)
T ss_dssp             CCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHhhCCCHHHEEeccCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    55667777778999999999 6899999999


Q ss_pred             HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC------CCChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172          249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL  318 (412)
Q Consensus       249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~  318 (412)
                      ++++++|+++++|+++|+|+|| ++++|+|+.++    |..      .++.++++++.++++.+++++++.. |.|+++|
T Consensus       157 ~la~~lg~~~~~v~~~v~g~Hg-~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~~~~  234 (317)
T 2ewd_A          157 FIAQHFGVNASDVSANVIGGHG-DGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYF  234 (317)
T ss_dssp             HHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSCCCH
T ss_pred             HHHHHhCcChhhceEEEEecCC-CceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCchHH
Confidence            9999999999999999999996 79999999984    211      1467788999998999999999952 3379999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCCeEEeeeec-CCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172          319 SMAYAAARFVESSLRALDGDGDVYECVFVE-SNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA  396 (412)
Q Consensus       319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~  396 (412)
                      ++|.++++++++|++|   ++.+++++.+. +.|. ++.||++||++|++|++++++   ++|+++|+++|++|++.|++
T Consensus       235 ~~a~a~~~~~~ai~~~---~~~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~  308 (317)
T 2ewd_A          235 APAAAAVKMAEAYLKD---KKAVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILE---LDLTPLEQKLLGESINEVNT  308 (317)
T ss_dssp             HHHHHHHHHHHHHHTT---CCEEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC---CCeEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecC---CCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999988   46789987654 4342 567999999999999999998   68999999999999999999


Q ss_pred             HHHHH
Q 015172          397 SIEKG  401 (412)
Q Consensus       397 ~i~~~  401 (412)
                      .+++.
T Consensus       309 ~~~~~  313 (317)
T 2ewd_A          309 ISKVL  313 (317)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99764

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=3e-43  Score=349.12  Aligned_cols=299  Identities=25%  Similarity=0.391  Sum_probs=250.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC-----CeEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV-----SALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~-----~ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +|||.|+||+|++|++++..|+.+|+.     .+|+++|+++    ..+.+.|+.|...+. +.++..+.++.++++++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhCCCC
Confidence            479999998899999999999998865     3999999974    456677888764433 244544466667899999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEecccc
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGVTTL  241 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGlt~L  241 (412)
                      +||++||.+++++++|.|++..|+.+.+++++.+++++ |+++++++|||++.+    +.+.++.+ +++|.++.|.|.|
T Consensus        83 ~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~----~~~~~~~~~~~~p~~~yg~tkl  158 (327)
T 1y7t_A           83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN----ALIAYKNAPGLNPRNFTAMTRL  158 (327)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH----HHHHHHTCTTSCGGGEEECCHH
T ss_pred             EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh----HHHHHHHcCCCChhheeccchH
Confidence            99999999999999999999999999999999999998 999999999999843    44455655 6899999999999


Q ss_pred             chHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCC----CCCCCChHH--HHHHHHHHhhccchhhhcccCCC
Q 015172          242 DVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTM----PSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       242 ds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~----p~~~~~~~~--~~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      |+.|+.+++++++|+++..++. +|+|+|+ ++++|.|++..    |..++.+++  ++++.++++++|++|+++| | +
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-~  235 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHS-STMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-A  235 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-S
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCC-CeEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-C
Confidence            9999999999999999999994 7899997 68999999874    433442223  4899999999999999998 3 3


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC---CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECVFVESN---LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~---i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      ++++++|+++++++++|++|++ ++++++|+....+   ++++.|||+||+| ++|++++++  .++|+++|+++|++|+
T Consensus       236 ~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~--~~~l~~~e~~~l~~s~  311 (327)
T 1y7t_A          236 SSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVE--GLEINEFARKRMEITA  311 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECC--CCCCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecC--CCCCCHHHHHHHHHHH
Confidence            4455688999999999999862 2468898865433   3577899999999 999999987  3689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 015172          392 PELKASIEKGVA  403 (412)
Q Consensus       392 ~~L~~~i~~~~~  403 (412)
                      ++|++.++.+.+
T Consensus       312 ~~l~~~~~~~~~  323 (327)
T 1y7t_A          312 QELLDEMEQVKA  323 (327)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=4.9e-41  Score=330.70  Aligned_cols=292  Identities=24%  Similarity=0.408  Sum_probs=246.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++|||+|||| |.||..+++.|+..|++++|+|+|+++  ..+.+.++.+.... ... .+..+++++ ++++||+||++
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~aD~Vii~   82 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV-SIDGSDDPE-ICRDADMVVIT   82 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTC-EEEEESCGG-GGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCe-EEEeCCCHH-HhCCCCEEEEC
Confidence            4589999998 999999999999999888999999986  34445666554310 111 222334665 79999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN  247 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~  247 (412)
                      ++.|++||++|.|++.+|+++++++++.+++++|++++++++||++    +.++++++.+++|+++|||. |.+|+.|++
T Consensus        83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~----~~~~~~~~~~~~~~~~vig~~~~l~~~r~~  158 (319)
T 1lld_A           83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLR  158 (319)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH----HHHHHHHHhcCCCHHHEeeccccHhHHHHH
Confidence            9999999999999999999999999999999999999999999999    55666777667999999999 899999999


Q ss_pred             HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC--------Ch-HHHHHHHHHHhhccchhhhcccCCC
Q 015172          248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF--------TD-EEVGDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~--------~~-~~~~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      ..+++++++++.+++.+++|+|+ ++++|+|+++.    |...+        .+ +.++++.+++++.+++|++.|   |
T Consensus       159 ~~~a~~~~v~~~~v~~~~~G~~g-~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~---G  234 (319)
T 1lld_A          159 FLIAQQTGVNVKNVHAYIAGEHG-DSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---G  234 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSS-TTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSC---C
T ss_pred             HHHHHHhCCCHHHeEEEEEeCCC-CceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCC---C
Confidence            99999999999999999999996 68999999864    22222        23 347889999999999999987   7


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      ++.++++.+..+|+++|+++   .+.+++++. +++.+ ..+.++++||.++++|++++++   ++|+++|+++|++|++
T Consensus       235 ~~~~~~a~~~~sm~~di~~~---~~~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~---~~l~~~e~~~l~~s~~  308 (319)
T 1lld_A          235 ATNYAIGMSGVDIIEAVLHD---TNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTIN---TPVSDKELAALKRSAE  308 (319)
T ss_dssp             SCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSC---CCCCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHcC---CCcEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcC---CCCCHHHHHHHHHHHH
Confidence            88899999999999999987   467888864 44444 3457999999999999999999   7899999999999999


Q ss_pred             HHHHHHHH
Q 015172          393 ELKASIEK  400 (412)
Q Consensus       393 ~L~~~i~~  400 (412)
                      .|++.+++
T Consensus       309 ~l~~~~~~  316 (319)
T 1lld_A          309 TLKETAAQ  316 (319)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998864

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=3.4e-41  Score=345.12  Aligned_cols=288  Identities=15%  Similarity=0.150  Sum_probs=229.8

Q ss_pred             CceEEEEcCCCCc-HHHHHHHHHh--CCC-CCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGI-GQPLALLIKM--SPL-VSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~v-G~~iA~~l~~--~gl-~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ++||+|||| |++ +..++..|+.  .++ ++||+|+|+++  ++. +.++.+...... ..+.+++|++++++|||+||
T Consensus         2 ~~KI~IIGa-G~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~-~~v~~t~d~~~al~~AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDR-FKVLISDTFEGAVVDAKYVI   78 (417)
T ss_dssp             CCEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTS-SEEEECSSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCC-eEEEEeCCHHHHhCCCCEEE
Confidence            589999998 886 2222334565  677 88999999997  222 445544221111 34556789877999999999


Q ss_pred             EcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHH
Q 015172          167 IPAGVPRKPGMTRDDL--------------------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQ  226 (412)
Q Consensus       167 iaag~p~k~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~  226 (412)
                      +++|++++||++|+++                    ..+|++++++++++|+++| |||+|++|||++    ++|+++++
T Consensus        79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~k  153 (417)
T 1up7_A           79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVRN  153 (417)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHHH
T ss_pred             EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHHH
Confidence            9999999999998532                    4899999999999999999 999999999999    78999999


Q ss_pred             hCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-----------ccCCcccccccccC----------CCCC
Q 015172          227 KGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-----------GHAGITILPLLSKT----------MPSV  285 (412)
Q Consensus       227 ~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-----------~hgg~~~vp~~S~~----------~p~~  285 (412)
                      .+  |++||||+|+.. .|+++++|+.+|+++++|+++|+|           +|| ++++|.|+..          .|..
T Consensus       154 ~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG-~d~~p~~~~~~~~~~~~~~~~~~~  229 (417)
T 1up7_A          154 YL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKG-EDVTEKVFENLKLKLSNIPDEDFP  229 (417)
T ss_dssp             TT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETT-EECHHHHHHHHTTC---CCTTSCC
T ss_pred             hC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCC-cEehhhHHHHHHHhhCCCcCCchH
Confidence            84  777999997643 499999999999999999999999           885 7999999985          2321


Q ss_pred             -CC-----------------ChHHHHHH---------HHHHhhccchhh----------hcccCCCchhhhHHHHHHHHH
Q 015172          286 -SF-----------------TDEEVGDL---------TVRIQNAGTEVV----------EAKAGAGSATLSMAYAAARFV  328 (412)
Q Consensus       286 -~~-----------------~~~~~~~l---------~~~v~~~g~eii----------~~K~g~gst~~s~A~a~~~ii  328 (412)
                       ++                 +++.++++         .+++++.+++++          +.|   |++.  ++.++++++
T Consensus       230 ~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~k---g~t~--~~~~a~~ii  304 (417)
T 1up7_A          230 TWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKR---GGSM--YSTAAAHLI  304 (417)
T ss_dssp             HHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGS---TTTT--HHHHHHHHH
T ss_pred             HHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhc---CCcH--HHHHHHHHH
Confidence             00                 22333444         477778788988          334   5564  478999999


Q ss_pred             HHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015172          329 ESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA  403 (412)
Q Consensus       329 ~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~  403 (412)
                      ++|++|   ++.+++|+..+.+ |   |++.|+++||+||++|++++..   .+|+++|+++++.++...+..++.+++
T Consensus       305 ~AI~~d---~~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~---~~L~~~e~~~l~~~~~~e~l~veA~~~  377 (417)
T 1up7_A          305 RDLETD---EGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ---GKGDHFALSFIHAVKMYERLTIEAYLK  377 (417)
T ss_dssp             HHHHSS---SCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC---CCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcC---CCeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeec---CCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999   5789999877654 4   4678999999999999999998   789999999999999999988877765

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=5.1e-40  Score=339.40  Aligned_cols=293  Identities=15%  Similarity=0.197  Sum_probs=228.9

Q ss_pred             CceEEEEcCCCCc-HHHHHHHHHh--CCC-CCeEEEEecCc--hhhh-----hhhhc-ccCCCCceeeecCCCcHHhhcC
Q 015172           93 SFKVAVLGAAGGI-GQPLALLIKM--SPL-VSALHLYDVMN--VKGV-----AADLS-HCNTPSQVLDFTGPEELASALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~v-G~~iA~~l~~--~gl-~~ev~L~Di~~--~~g~-----~~dL~-~~~~~~~v~~i~~t~d~~~al~  160 (412)
                      .+||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+..     ..++. +...+.   .+..|+|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~---~i~~t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPI---EIHLTLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCC---EEEEESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCc---EEEEeCCHHHHhC
Confidence            379999998 988 7777777776  566 78999999987  3211     12222 222222   3445689877999


Q ss_pred             CCcEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHH
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDL--------------------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA  220 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~  220 (412)
                      |||+||+++|++++||++|+|+                    +.+|++++++++++|+++|||||+|++|||+|    ++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----iv  158 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  158 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            9999999999999999999855                    78999999999999999999999999999999    78


Q ss_pred             HHHHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-----------ccCCcccccccccCC-------
Q 015172          221 AEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-----------GHAGITILPLLSKTM-------  282 (412)
Q Consensus       221 t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-----------~hgg~~~vp~~S~~~-------  282 (412)
                      |+++++.+  |++||||+|++. .|+++++|+.+|+++++|+++|+|           +|| ++++|.|+...       
T Consensus       159 T~a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G-~d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          159 TEAVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDG-VEVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             HHHHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETT-EECHHHHHHHHSCC----
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCC-cCchHhHHHHHhhhcccc
Confidence            99999985  778999998754 599999999999999999999999           775 89999998631       


Q ss_pred             ---------CCC------------CC------ChHH-------------HHHHHHHHhhccchhh-----hcccCC--Cc
Q 015172          283 ---------PSV------------SF------TDEE-------------VGDLTVRIQNAGTEVV-----EAKAGA--GS  315 (412)
Q Consensus       283 ---------p~~------------~~------~~~~-------------~~~l~~~v~~~g~eii-----~~K~g~--gs  315 (412)
                               |..            ++      +++.             +.++.+++++.+++++     +.|.-.  +.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                     211            00      1221             2255677888899999     555100  13


Q ss_pred             hhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          316 ATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       316 t~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                      +.+++|.++++|+++|++|   ++.+++|+..+.+ |   +++.|+++||+||++|+++++.   .+|+++|+++++.++
T Consensus       315 ~~~~~~~~a~~ii~AI~~d---~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~---~~L~~~e~~l~~~~~  388 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYND---KRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV---GDLPVAVRGLVQQIK  388 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHT---CCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC---BCCCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcC---CCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeec---CCCCHHHHHHHHHHH
Confidence            3446678999999999999   5789999877654 4   4778999999999999999998   789999999999988


Q ss_pred             HHHHHHHHHHHH
Q 015172          392 PELKASIEKGVA  403 (412)
Q Consensus       392 ~~L~~~i~~~~~  403 (412)
                      ..-+-.++.+++
T Consensus       389 ~~e~l~veAa~~  400 (450)
T 1s6y_A          389 SFERVAAEAAVT  400 (450)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            776655555544

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.1e-38  Score=330.87  Aligned_cols=290  Identities=16%  Similarity=0.236  Sum_probs=220.1

Q ss_pred             ceEEEEcCCCCc-HHHHHHHHHhC--CC-CCeEEEEecCc--hhhhhhhhccc-----CCCCceeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGI-GQPLALLIKMS--PL-VSALHLYDVMN--VKGVAADLSHC-----NTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~v-G~~iA~~l~~~--gl-~~ev~L~Di~~--~~g~~~dL~~~-----~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +||+|||| |++ |..++..|+.+  ++ .+||+|+|+++  +++ ..|+.+.     ..+.   .+..++|++++++||
T Consensus        29 ~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~---~I~~t~D~~eal~~A  103 (472)
T 1u8x_X           29 FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDI---EFAATTDPEEAFTDV  103 (472)
T ss_dssp             EEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTS---EEEEESCHHHHHSSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCC---EEEEECCHHHHHcCC
Confidence            69999998 998 55577778877  77 78999999997  233 2344332     1222   344568997799999


Q ss_pred             cEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHH
Q 015172          163 NVVVIPAGVPRKPGMTRDDL--------------------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAE  222 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~  222 (412)
                      |+||+++|+++++|++|+|+                    +.+|++++++++++|+++|||||+|++|||+|    ++|+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----i~T~  179 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAE  179 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHH
Confidence            99999999999999998665                    78999999999999999999999999999999    7899


Q ss_pred             HHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCC-CCeeeeEEc-----------c-cCCcccccccccCC------C
Q 015172          223 VLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL-IDVDVPVVG-----------G-HAGITILPLLSKTM------P  283 (412)
Q Consensus       223 i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~-~~V~~~ViG-----------~-hgg~~~vp~~S~~~------p  283 (412)
                      ++++.+  |++||||+|++. .|+++++|+.+|+++ ++|+++|+|           + || ++++|.|+...      |
T Consensus       180 ~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG-~d~~p~~~~~~~~~g~~~  255 (472)
T 1u8x_X          180 ATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEG-NDLMPKLKEHVSQYGYIP  255 (472)
T ss_dssp             HHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTC-CBCHHHHHHHHHHHSSCC
T ss_pred             HHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCC-CEehHhHHHHHHhcCCCc
Confidence            999984  788999998754 499999999999998 999999999           7 75 79999998731      2


Q ss_pred             CC-------CCChHH--------------------H----HHHHHH----------Hhh----ccchhhh-c--ccCCCc
Q 015172          284 SV-------SFTDEE--------------------V----GDLTVR----------IQN----AGTEVVE-A--KAGAGS  315 (412)
Q Consensus       284 ~~-------~~~~~~--------------------~----~~l~~~----------v~~----~g~eii~-~--K~g~gs  315 (412)
                      ..       .+..+-                    |    +++.++          +++    ..+++++ .  |....+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~  335 (472)
T 1u8x_X          256 KTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSEN  335 (472)
T ss_dssp             CC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCS
T ss_pred             cccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCccc
Confidence            00       011000                    1    222222          222    2233333 3  410013


Q ss_pred             hhh---hHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHH
Q 015172          316 ATL---SMAYAAARFVESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALE  388 (412)
Q Consensus       316 t~~---s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~  388 (412)
                      +.+   +++.++++|+++|++|   ++.+++|+..+.+ |   +++.|+++||+||++|+++++.   .+|+++|+++++
T Consensus       336 ~~~~~~~~~~~a~~ii~AI~~d---~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~---~~Lp~~~~~l~~  409 (472)
T 1u8x_X          336 SEIKIDDHASYIVDLARAIAYN---TGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV---GTIPQFQKGLME  409 (472)
T ss_dssp             CSSCCCTTTHHHHHHHHHHHHT---CCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC---BCCCHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhcC---CCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeec---CCCCHHHHHHHH
Confidence            444   9999999999999999   5789999877654 3   4778999999999999999998   789999999998


Q ss_pred             HHHHHHHHHHHHHH
Q 015172          389 ALKPELKASIEKGV  402 (412)
Q Consensus       389 ~sa~~L~~~i~~~~  402 (412)
                      .-+..-+-.++.++
T Consensus       410 ~~~~~e~l~veAa~  423 (472)
T 1u8x_X          410 QQVSVEKLTVEAWA  423 (472)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            86655444444443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.97  E-value=2.7e-29  Score=258.75  Aligned_cols=284  Identities=18%  Similarity=0.277  Sum_probs=201.7

Q ss_pred             CceEEEEcCCCCcH--HHHHHHHHhCC-CCCeEEEEecCchh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIG--QPLALLIKMSP-LVSALHLYDVMNVK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG--~~iA~~l~~~g-l~~ev~L~Di~~~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      .+||+|||| |+||  .+++..++... +.++|+|+|+++..    ....+....   . ...++.|+|+++|++|||+|
T Consensus         5 ~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~-~~~I~~TtD~~eAl~dADfV   79 (450)
T 3fef_A            5 QIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---G-RWRYEAVSTLKKALSAADIV   79 (450)
T ss_dssp             CEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---S-CEEEEEESSHHHHHTTCSEE
T ss_pred             CCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---c-CCeEEEECCHHHHhcCCCEE
Confidence            479999998 9985  67777777643 44699999999721    112222111   1 23466789999999999999


Q ss_pred             EEcCC------------CCCCCCCchh--hHHH--------hhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172          166 VIPAG------------VPRKPGMTRD--DLFN--------INANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV  223 (412)
Q Consensus       166 Iiaag------------~p~k~g~~r~--dl~~--------~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i  223 (412)
                      |++++            .|+|+|+.|.  |+..        +|++++++++++|+++||+||+|++|||+|    ++|++
T Consensus        80 I~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t~~  155 (450)
T 3fef_A           80 IISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCTRV  155 (450)
T ss_dssp             EECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHH
T ss_pred             EeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHH
Confidence            99985            5899999877  6554        999999999999999999999999999999    78999


Q ss_pred             HHHhCCCCCCCeEeccccchHHHHHHHHHHc----C---CCCCCeeeeEEcccC----------Cccccccccc------
Q 015172          224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKK----N---LKLIDVDVPVVGGHA----------GITILPLLSK------  280 (412)
Q Consensus       224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l----~---v~~~~V~~~ViG~hg----------g~~~vp~~S~------  280 (412)
                      +++.  +|+.||||+|+.. .++++.+|+.|    |   +++++|+..++|-||          |.+.+|.+..      
T Consensus       156 ~~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~  232 (450)
T 3fef_A          156 LYKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYG  232 (450)
T ss_dssp             HHHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHHHT
T ss_pred             HHHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHhhc
Confidence            9887  7899999999876 78999999999    5   779999999999655          4455552100      


Q ss_pred             ------------------C-------------CCCC------C-C---------------ChHHH--HHH---HHHHhhc
Q 015172          281 ------------------T-------------MPSV------S-F---------------TDEEV--GDL---TVRIQNA  302 (412)
Q Consensus       281 ------------------~-------------~p~~------~-~---------------~~~~~--~~l---~~~v~~~  302 (412)
                                        .             .|..      + +               +...|  +++   .+++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  312 (450)
T 3fef_A          233 ESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERL  312 (450)
T ss_dssp             TTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence                              0             0100      0 0               00001  001   1111100


Q ss_pred             --cchhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCC
Q 015172          303 --GTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDL  376 (412)
Q Consensus       303 --g~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l  376 (412)
                        +.+-++.+   ++     +.++++++++|++|   ++.+++++..+.+ |   +++.|+++||++|++|++++..   
T Consensus       313 ~~~~~~~~~~---~~-----~e~~~~ii~aI~~d---~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~---  378 (450)
T 3fef_A          313 IVQQRGVAEK---AS-----GEEGVNIIAALLGL---GELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS---  378 (450)
T ss_dssp             HHTTCCCCCS---CC-----SCCHHHHHHHHTTS---CCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC---
T ss_pred             hcCCcCcCcC---cc-----HHHHHHHHHHHHcC---CCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc---
Confidence              00011111   11     23478999999998   4679999877654 4   5677999999999999999987   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015172          377 QGLTEYEQKALEALKPELKASIEKGV  402 (412)
Q Consensus       377 ~~Lse~E~~~L~~sa~~L~~~i~~~~  402 (412)
                      .+|+++++.+++.-+..-+-.++.++
T Consensus       379 g~Lp~~~~~l~~~~~~~e~l~veAa~  404 (450)
T 3fef_A          379 GALPKGVEMLAARHISNQEAVADAGL  404 (450)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999988776555444444443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.96  E-value=3.6e-29  Score=259.67  Aligned_cols=292  Identities=18%  Similarity=0.203  Sum_probs=198.6

Q ss_pred             CceEEEEcCCCCcHHHH--HHHHHhC-CC-CCeEEEEecCc--hhhhhhhhcccC---CCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPL--ALLIKMS-PL-VSALHLYDVMN--VKGVAADLSHCN---TPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~i--A~~l~~~-gl-~~ev~L~Di~~--~~g~~~dL~~~~---~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      ++||+|||| |.||.+.  +..|+.. ++ ..+|+|+|+++  +.+ +.++.+..   ... ...+..++|++++++|||
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~-~~~I~~ttD~~eal~dAD   79 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGA-DLKFEKTMNLDDVIIDAD   79 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTC-CCEEEEESCHHHHHTTCS
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCC-CcEEEEECCHHHHhCCCC
Confidence            479999998 9987665  5577643 44 56999999997  222 22222211   111 123456789977999999


Q ss_pred             EEEEcCCC------------CCCCCCch--hh------------HHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcH
Q 015172          164 VVVIPAGV------------PRKPGMTR--DD------------LFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTV  217 (412)
Q Consensus       164 iVIiaag~------------p~k~g~~r--~d------------l~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~  217 (412)
                      +||+++|+            |+|+|+.|  .|            ++.+|++++++++++|+++||+||+|++|||++   
T Consensus        80 ~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd---  156 (480)
T 1obb_A           80 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF---  156 (480)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH---
T ss_pred             EEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH---
Confidence            99999987            56777766  55            378999999999999999999999999999999   


Q ss_pred             HHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC----------Ccccccc----------
Q 015172          218 PIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPL----------  277 (412)
Q Consensus       218 pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~----------  277 (412)
                       ++|+++++   +|+.||||+|+++. ++++++ +.+|+++++|+++|+|.||          |.+.+|.          
T Consensus       157 -i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~  230 (480)
T 1obb_A          157 -EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEEKSK  230 (480)
T ss_dssp             -HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHHTGG
T ss_pred             -HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHccCc
Confidence             78998888   68999999976443 478999 9999999999999999776          3333331          


Q ss_pred             -------ccc--C------------CCCC------CCC-------------------hH-----H----HHHHHHHHhhc
Q 015172          278 -------LSK--T------------MPSV------SFT-------------------DE-----E----VGDLTVRIQNA  302 (412)
Q Consensus       278 -------~S~--~------------~p~~------~~~-------------------~~-----~----~~~l~~~v~~~  302 (412)
                             |+.  .            .|..      ++.                   .+     +    +.+....+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~  310 (480)
T 1obb_A          231 DWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKV  310 (480)
T ss_dssp             GCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHHHH
Confidence                   221  0            1220      111                   10     1    11222222222


Q ss_pred             cchhhhcccCC--------Cchhhh----------------HHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCC
Q 015172          303 GTEVVEAKAGA--------GSATLS----------------MAYAAARFVESSLRALDGDGDVYECVFVESN----LTEL  354 (412)
Q Consensus       303 g~eii~~K~g~--------gst~~s----------------~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~  354 (412)
                      -+++.+.+.-.        +.++|+                .+-.+++++++|++|   .+.++.+.+.+.+    ++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~lp~d  387 (480)
T 1obb_A          311 AKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLND---NKARFVVNIPNKGIIHGIDDD  387 (480)
T ss_dssp             HHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHC---CCEEEEEEEECTTSSTTSCTT
T ss_pred             HHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhC---CCeEEEEEeeCCceeCCCCCC
Confidence            22233221000        122221                113578999999998   4567777777665    4677


Q ss_pred             CceeeeEEEcCCceEEeecCCCCC-CCHHHHHH-HHHHHHHHHHHHHHHH
Q 015172          355 PFFASRVKLGRNGVESLISSDLQG-LTEYEQKA-LEALKPELKASIEKGV  402 (412)
Q Consensus       355 ~~~s~Pv~igk~Gv~~v~~~~l~~-Lse~E~~~-L~~sa~~L~~~i~~~~  402 (412)
                      .++.+||+++++|+..+.-   .+ |++..+.+ ++.-+..-+-.++.++
T Consensus       388 ~vVEvp~~v~~~G~~p~~~---g~~lP~~~~~l~~~~~~~~e~l~veA~~  434 (480)
T 1obb_A          388 VVVEVPALVDKNGIHPEKI---EPPLPDRVVKYYLRPRIMRMEMALEAFL  434 (480)
T ss_dssp             SEEEEEEEEETTEEEECCC---SSCCCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEcCCCCEeecc---CCCCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999876   67 99998888 7665544443444333

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.95  E-value=3.3e-27  Score=245.48  Aligned_cols=166  Identities=20%  Similarity=0.209  Sum_probs=128.9

Q ss_pred             ceEEEEcCCCCcHHHHHH--HHHhC----CCCCeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLAL--LIKMS----PLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~--~l~~~----gl~~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      |||+|||| |++|.+...  .++..    +..++|+|+|+++  +++...++.+..  ..... .+.+|+|+++||+|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~-~i~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPV-KVVKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCC-EEEEESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCe-EEEEeCCHHHHhCCCC
Confidence            79999998 999877432  34433    2346999999997  444444544432  11122 3456789999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCchhhHH---------------HhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          164 VVVIPAGV-------------------PRKPGMTRDDLF---------------NINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       164 iVIiaag~-------------------p~k~g~~r~dl~---------------~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      +||+++|.                   |+|+|++|.++.               .+|++++.+++++|+++|||||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999975                   458888877653               35899999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC
Q 015172          210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA  270 (412)
Q Consensus       210 TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg  270 (412)
                      |||++    ++|+.+++.+   ..|+||+|+-...  ...+++.||+++++|+..+.|.||
T Consensus       159 tNP~~----i~t~a~~~~~---~~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH  210 (477)
T 3u95_A          159 ANPVF----EITQAVRRWT---GANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNH  210 (477)
T ss_dssp             SSCHH----HHHHHHHHHH---CCCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETT
T ss_pred             cChHH----HHHHHHHHhC---CCCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCC
Confidence            99999    7788888864   4689999974433  345778899999999999999998

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.71  E-value=2.9e-17  Score=178.56  Aligned_cols=154  Identities=17%  Similarity=0.226  Sum_probs=120.0

Q ss_pred             ChhHHHHHHhhhhhhhhhhccCC-----CCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hh
Q 015172           62 NKESCSALRSTFARKAQSSEQRP-----QYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VK  131 (412)
Q Consensus        62 ~~~~~~~~~~~f~~~~~~~~~~~-----~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~  131 (412)
                      ..|++++|++.||.+++.+|...     +....+++.+||+|||| |.||++||+.++..|+  +|+|+|+++     .+
T Consensus       280 ~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~  356 (742)
T 3zwc_A          280 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAK  356 (742)
T ss_dssp             TSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHH
Confidence            46788999999999888776543     12345577889999998 9999999999999999  999999986     11


Q ss_pred             hhhhhhcc--------cCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-C
Q 015172          132 GVAADLSH--------CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-P  202 (412)
Q Consensus       132 g~~~dL~~--------~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p  202 (412)
                      .......+        .........++.+++++ ++++||+||++              +.||+++++++.+++++++ |
T Consensus       357 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aDlVIEA--------------V~E~l~iK~~vf~~le~~~~~  421 (742)
T 3zwc_A          357 KIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTVDLVVEA--------------VFEDMNLKKKVFAELSALCKP  421 (742)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSCSEEEEC--------------CCSCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhCCEEEEe--------------ccccHHHHHHHHHHHhhcCCC
Confidence            11111111        11112233455677886 79999999999              6999999999999999999 7


Q ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       203 ~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      ++|+  +||+|.  +|| ++++...  -+|+||+|++.
T Consensus       422 ~aIl--ASNTSs--l~i-~~ia~~~--~~p~r~ig~HF  452 (742)
T 3zwc_A          422 GAFL--CTNTSA--LNV-DDIASST--DRPQLVIGTHF  452 (742)
T ss_dssp             TCEE--EECCSS--SCH-HHHHTTS--SCGGGEEEEEC
T ss_pred             CceE--EecCCc--CCh-HHHHhhc--CCccccccccc
Confidence            9999  999999  566 8887665  67999999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.59  E-value=9.1e-16  Score=151.65  Aligned_cols=124  Identities=15%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhh----hhcccC--C---C--CceeeecCCCcHH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAA----DLSHCN--T---P--SQVLDFTGPEELA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~----dL~~~~--~---~--~~v~~i~~t~d~~  156 (412)
                      ..||+|||| |.||+++|..++..|+  +|+|+|+++ .    .....    .+....  .   .  ..+..++.++|++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~   82 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLA   82 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchH
Confidence            468999998 9999999999999999  999999986 1    11111    121111  1   1  1234566778998


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                      +++++||+||++              +.||+++++++.+++++++ |++|+  +||+|.  +++ ++++...  -+|+||
T Consensus        83 ~a~~~ad~ViEa--------------v~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSs--l~i-s~ia~~~--~~p~r~  141 (319)
T 3ado_A           83 EAVEGVVHIQEC--------------VPENLDLKRKIFAQLDSIVDDRVVL--SSSSSC--LLP-SKLFTGL--AHVKQC  141 (319)
T ss_dssp             HHTTTEEEEEEC--------------CCSCHHHHHHHHHHHHTTCCSSSEE--EECCSS--CCH-HHHHTTC--TTGGGE
T ss_pred             hHhccCcEEeec--------------cccHHHHHHHHHHHHHHHhhhccee--ehhhhh--ccc-hhhhhhc--cCCCcE
Confidence            899999999999              6899999999999999999 79999  999999  555 8887666  579999


Q ss_pred             Eeccc
Q 015172          236 FGVTT  240 (412)
Q Consensus       236 iGlt~  240 (412)
                      +|++.
T Consensus       142 ig~Hf  146 (319)
T 3ado_A          142 IVAHP  146 (319)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.56  E-value=1.9e-14  Score=149.07  Aligned_cols=151  Identities=17%  Similarity=0.247  Sum_probs=108.1

Q ss_pred             hhHHHHHHhhhhhhhhhhccCC-----CCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--h---h
Q 015172           63 KESCSALRSTFARKAQSSEQRP-----QYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--K---G  132 (412)
Q Consensus        63 ~~~~~~~~~~f~~~~~~~~~~~-----~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~---g  132 (412)
                      .|+|++||++||..++.||...     +....+.+++||+|||+ |.||.++|..++..|+  +|+++|+++.  .   .
T Consensus         2 ~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~   78 (463)
T 1zcj_A            2 SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKK   78 (463)
T ss_dssp             CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHH
Confidence            3789999999999999887432     12334566789999998 9999999999999998  9999999861  1   1


Q ss_pred             hhhhh----------cccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-
Q 015172          133 VAADL----------SHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-  201 (412)
Q Consensus       133 ~~~dL----------~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-  201 (412)
                      ...+.          ...........+  ++|++ ++++||+||+++              .++..+++++.+++.+++ 
T Consensus        79 ~i~~~l~~~~~~g~~~~~~~~~~~~~i--~~~~~-~~~~aDlVIeaV--------------pe~~~~k~~v~~~l~~~~~  141 (463)
T 1zcj_A           79 IITFTLEKEASRAHQNGQASAKPKLRF--SSSTK-ELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCK  141 (463)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCEEE--ESCGG-GGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHhhh--cCCHH-HHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCC
Confidence            11111          000011112233  46774 799999999994              567889999999999988 


Q ss_pred             CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          202 PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       202 p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      |+++|  ++|+++.  ++ ++++...  -+|++++|++.
T Consensus       142 ~~~ii--~snTs~~--~~-~~la~~~--~~~~~~ig~hf  173 (463)
T 1zcj_A          142 PGAFL--CTNTSAL--NV-DDIASST--DRPQLVIGTHF  173 (463)
T ss_dssp             TTCEE--EECCSSS--CH-HHHHTTS--SCGGGEEEEEE
T ss_pred             CCeEE--EeCCCCc--CH-HHHHHHh--cCCcceEEeec
Confidence            68877  6799883  34 5555433  35788888753

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.50  E-value=5.7e-14  Score=152.79  Aligned_cols=156  Identities=15%  Similarity=0.262  Sum_probs=115.0

Q ss_pred             CChhHHHHHHhhhhhhhhhhccCCCC--CCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---h--hh
Q 015172           61 LNKESCSALRSTFARKAQSSEQRPQY--ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---K--GV  133 (412)
Q Consensus        61 ~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~--g~  133 (412)
                      ...+.++++++.|+.+++.+|..++.  ...+.+++||+|||+ |.||.++|..++..|+  +|+++|+++.   .  ..
T Consensus       278 ~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~  354 (725)
T 2wtb_A          278 VKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGR  354 (725)
T ss_dssp             TTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHH
T ss_pred             hcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHH
Confidence            34578889999999999988876532  345677889999998 9999999999999999  9999999861   1  11


Q ss_pred             hhhhcc----cC--CC----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-C
Q 015172          134 AADLSH----CN--TP----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-P  202 (412)
Q Consensus       134 ~~dL~~----~~--~~----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p  202 (412)
                      ..+..+    ..  ..    .....++.++|++ ++++||+||++              +.+|..+++++..++.+++ |
T Consensus       355 i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~~aDlVIea--------------Vpe~~~vk~~v~~~l~~~~~~  419 (725)
T 2wtb_A          355 VKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFRDVDMVIEA--------------VIENISLKQQIFADLEKYCPQ  419 (725)
T ss_dssp             HHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGTTCSEEEEC--------------CCSCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHCCCCEEEEc--------------CcCCHHHHHHHHHHHHhhCCC
Confidence            111111    11  00    0122344567884 89999999999              5788999999999999999 6


Q ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecccc
Q 015172          203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTL  241 (412)
Q Consensus       203 ~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~L  241 (412)
                      ++++  +||+++  +|+ ++++...  .+|++++|++.+
T Consensus       420 ~~Il--asntSt--l~i-~~la~~~--~~p~~~iG~hf~  451 (725)
T 2wtb_A          420 HCIL--ASNTST--IDL-NKIGERT--KSQDRIVGAHFF  451 (725)
T ss_dssp             TCEE--EECCSS--SCH-HHHTTTC--SCTTTEEEEEEC
T ss_pred             CcEE--EeCCCC--CCH-HHHHHHh--cCCCCEEEecCC
Confidence            8876  899987  455 6655444  457889988643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.40  E-value=9.6e-14  Score=150.84  Aligned_cols=154  Identities=18%  Similarity=0.203  Sum_probs=113.5

Q ss_pred             CChhHHHHHHhhhhhhhhhhccCC-CCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhh
Q 015172           61 LNKESCSALRSTFARKAQSSEQRP-QYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVA  134 (412)
Q Consensus        61 ~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~  134 (412)
                      ...|.++++++.|+++++.+|..+ +. ..+.+.+||+|||+ |.||.++|..++..|+  +|+++|+++.     ....
T Consensus       282 ~~s~~~~~~~~aF~~kr~~~~~~~~~~-~~~~~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i  357 (715)
T 1wdk_A          282 AKTSASNCLIGLFLNDQELKKKAKVYD-KIAKDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEA  357 (715)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHhhhhhhccccCCC-CccccCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHH
Confidence            345778899999999999888764 32 35667889999998 9999999999999999  9999999861     1111


Q ss_pred             hhhc----ccCC-C-----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CC
Q 015172          135 ADLS----HCNT-P-----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PD  203 (412)
Q Consensus       135 ~dL~----~~~~-~-----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~  203 (412)
                      .+..    .... .     .....++.++|+ +++++||+||++              +.++..+++++..++.+++ |+
T Consensus       358 ~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIea--------------V~e~~~vk~~v~~~l~~~~~~~  422 (715)
T 1wdk_A          358 AKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEA--------------VVENPKVKQAVLAEVENHVRED  422 (715)
T ss_dssp             HHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEEC--------------CCSCHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCCCCEEEEc--------------CCCCHHHHHHHHHHHHhhCCCC
Confidence            1111    1110 0     012234456788 589999999999              5778899999999999998 68


Q ss_pred             eEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       204 aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      +++  +||+++  +|+ ++++...  .+|++++|++.
T Consensus       423 ~Il--asntSt--l~i-~~la~~~--~~~~~~ig~hf  452 (715)
T 1wdk_A          423 AIL--ASNTST--ISI-SLLAKAL--KRPENFVGMHF  452 (715)
T ss_dssp             CEE--EECCSS--SCH-HHHGGGC--SCGGGEEEEEC
T ss_pred             eEE--EeCCCC--CCH-HHHHHHh--cCccceEEEEc
Confidence            877  899987  455 6665544  45678888754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.37  E-value=6.8e-13  Score=136.98  Aligned_cols=127  Identities=14%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhh----hhcccC-CC-----CceeeecCCCcHH
Q 015172           89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAA----DLSHCN-TP-----SQVLDFTGPEELA  156 (412)
Q Consensus        89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~----dL~~~~-~~-----~~v~~i~~t~d~~  156 (412)
                      ++.+++||+|||+ |.||.++|..++..|+  +|+++|+++.++  ...    .+.... ..     ..+..++.++|++
T Consensus        50 ~~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           50 EAYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred             CcccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence            3466789999998 9999999999999999  999999987321  111    111111 10     1123344567886


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                       ++++||+||++              +.+|..+++++.+++++++ |++||  +||++.  +|+ ++++...  -+|+++
T Consensus       127 -al~~aDlVIeA--------------Vpe~~~vk~~v~~~l~~~~~~~aIl--asnTSs--l~i-~~ia~~~--~~p~r~  184 (460)
T 3k6j_A          127 -KLSNCDLIVES--------------VIEDMKLKKELFANLENICKSTCIF--GTNTSS--LDL-NEISSVL--RDPSNL  184 (460)
T ss_dssp             -GCTTCSEEEEC--------------CCSCHHHHHHHHHHHHTTSCTTCEE--EECCSS--SCH-HHHHTTS--SSGGGE
T ss_pred             -HHccCCEEEEc--------------CCCCHHHHHHHHHHHHhhCCCCCEE--EecCCC--hhH-HHHHHhc--cCCcce
Confidence             79999999999              5778999999999999999 78888  899998  555 6766555  457889


Q ss_pred             Eeccc
Q 015172          236 FGVTT  240 (412)
Q Consensus       236 iGlt~  240 (412)
                      +|+..
T Consensus       185 iG~Hf  189 (460)
T 3k6j_A          185 VGIHF  189 (460)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.19  E-value=1.9e-11  Score=118.08  Aligned_cols=125  Identities=14%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhh---cc-------cCCCC----ceeeecCCCcHH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADL---SH-------CNTPS----QVLDFTGPEELA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL---~~-------~~~~~----~v~~i~~t~d~~  156 (412)
                      ++||+|||+ |.||.++|..++..|+  +|+++|+++.  ......+   .+       .....    ....+..++|++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA   80 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence            469999998 9999999999999998  9999999871  1111111   00       00010    011233457888


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172          157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL  235 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv  235 (412)
                      +++++||+||++              +.++.++++++.+++.+++ |++++  ++|++..  ++ ++++...  .+++++
T Consensus        81 ~~~~~aDlVi~a--------------v~~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~--~~-~~la~~~--~~~~~~  139 (283)
T 4e12_A           81 QAVKDADLVIEA--------------VPESLDLKRDIYTKLGELAPAKTIF--ATNSSTL--LP-SDLVGYT--GRGDKF  139 (283)
T ss_dssp             HHTTTCSEEEEC--------------CCSCHHHHHHHHHHHHHHSCTTCEE--EECCSSS--CH-HHHHHHH--SCGGGE
T ss_pred             HHhccCCEEEEe--------------ccCcHHHHHHHHHHHHhhCCCCcEE--EECCCCC--CH-HHHHhhc--CCCcce
Confidence            789999999999              4667889999999999988 78877  7888773  34 6666655  357889


Q ss_pred             Eecccc
Q 015172          236 FGVTTL  241 (412)
Q Consensus       236 iGlt~L  241 (412)
                      +|++..
T Consensus       140 ig~h~~  145 (283)
T 4e12_A          140 LALHFA  145 (283)
T ss_dssp             EEEEEC
T ss_pred             EEEccC
Confidence            998754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.19  E-value=1.8e-11  Score=119.63  Aligned_cols=120  Identities=21%  Similarity=0.275  Sum_probs=90.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      -+||+|||+ |.||.++|..++ .|+  +|++||+++. ...+.+..   ....+..++.++|++ ++++||+||++   
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l---~~~~~~~i~~~~~~~-~~~~aDlViea---   80 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQI---PEELLSKIEFTTTLE-KVKDCDIVMEA---   80 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHS---CGGGGGGEEEESSCT-TGGGCSEEEEC---
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHH---HHHHhCCeEEeCCHH-HHcCCCEEEEc---
Confidence            579999998 999999999999 999  9999999872 11111111   111122344456776 48999999999   


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLD  242 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Ld  242 (412)
                                 +.++..+++.+..+++.. |++++  +||+++  +++ ++++...  -.|++++|++.++
T Consensus        81 -----------vpe~~~vk~~l~~~l~~~-~~~Il--asntSt--i~~-~~~a~~~--~~~~r~~G~Hf~~  132 (293)
T 1zej_A           81 -----------VFEDLNTKVEVLREVERL-TNAPL--CSNTSV--ISV-DDIAERL--DSPSRFLGVHWMN  132 (293)
T ss_dssp             -----------CCSCHHHHHHHHHHHHTT-CCSCE--EECCSS--SCH-HHHHTTS--SCGGGEEEEEECS
T ss_pred             -----------CcCCHHHHHHHHHHHhcC-CCCEE--EEECCC--cCH-HHHHHHh--hcccceEeEEecC
Confidence                       678899999999999998 99988  899988  344 5554444  4578999998765

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.16  E-value=2.8e-11  Score=125.85  Aligned_cols=124  Identities=18%  Similarity=0.314  Sum_probs=90.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhcccCC-C---------CceeeecCCCcHHh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHCNT-P---------SQVLDFTGPEELAS  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~~~-~---------~~v~~i~~t~d~~~  157 (412)
                      .+||+|||+ |.||.++|..++..|+  +|+++|+++.     .....+..+... .         ..+..++.++|++ 
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-   80 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-
Confidence            469999998 9999999999999998  9999999871     111111111110 0         0122344567886 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++++||+||++              +.+|..+++++..++++++ |++++  +||+++  +++ ++++...  -+|++++
T Consensus        81 ~~~~aDlVIeA--------------Vpe~~~vk~~v~~~l~~~~~~~~Il--asntSt--i~i-~~ia~~~--~~p~~~i  139 (483)
T 3mog_A           81 ALAAADLVIEA--------------ASERLEVKKALFAQLAEVCPPQTLL--TTNTSS--ISI-TAIAAEI--KNPERVA  139 (483)
T ss_dssp             GGGGCSEEEEC--------------CCCCHHHHHHHHHHHHHHSCTTCEE--EECCSS--SCH-HHHTTTS--SSGGGEE
T ss_pred             HhcCCCEEEEc--------------CCCcHHHHHHHHHHHHHhhccCcEE--EecCCC--CCH-HHHHHHc--cCccceE
Confidence            79999999999              5778899999999999998 78887  899988  445 5555544  3578888


Q ss_pred             ecccc
Q 015172          237 GVTTL  241 (412)
Q Consensus       237 Glt~L  241 (412)
                      |++..
T Consensus       140 g~hf~  144 (483)
T 3mog_A          140 GLHFF  144 (483)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            87543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.08  E-value=8.3e-11  Score=114.39  Aligned_cols=126  Identities=14%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hh---hhhh----hcccC-CCC----------ceeeecC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KG---VAAD----LSHCN-TPS----------QVLDFTG  151 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g---~~~d----L~~~~-~~~----------~v~~i~~  151 (412)
                      +++||+|||+ |.||.++|..++..|+  +|+++|+++.  ..   ...+    +.... ...          ....+..
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            4679999998 9999999999999998  9999999862  11   0111    11111 000          0112334


Q ss_pred             CCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCC
Q 015172          152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVY  230 (412)
Q Consensus       152 t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~  230 (412)
                      ++|+++++++||+||++              +.++..+++++.+++.+++ |+++|  +||++.  +++ +++....  .
T Consensus        91 ~~~~~~~~~~aD~Vi~a--------------vp~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~--i~~-~~l~~~~--~  149 (302)
T 1f0y_A           91 STDAASVVHSTDLVVEA--------------IVENLKVKNELFKRLDKFAAEHTIF--ASNTSS--LQI-TSIANAT--T  149 (302)
T ss_dssp             ESCHHHHTTSCSEEEEC--------------CCSCHHHHHHHHHHHTTTSCTTCEE--EECCSS--SCH-HHHHTTS--S
T ss_pred             ecCHHHhhcCCCEEEEc--------------CcCcHHHHHHHHHHHHhhCCCCeEE--EECCCC--CCH-HHHHHhc--C
Confidence            57887789999999999              4566788889999999888 68876  788877  334 5554433  3


Q ss_pred             CCCCeEecccc
Q 015172          231 DPKKLFGVTTL  241 (412)
Q Consensus       231 ~~~kviGlt~L  241 (412)
                      +|++++|+..+
T Consensus       150 ~~~~~~g~h~~  160 (302)
T 1f0y_A          150 RQDRFAGLHFF  160 (302)
T ss_dssp             CGGGEEEEEEC
T ss_pred             CcccEEEEecC
Confidence            46788888643

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.55  E-value=1.4e-07  Score=97.07  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccCCCC---c------eeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCNTPS---Q------VLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~~~~---~------v~~i~~t~d~~~al~~a  162 (412)
                      |||+|||+ |.||..+|..++..|.  +|+++|+++.+.  ..........+.   .      ...+..++|+++++++|
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            79999998 9999999999999998  999999987221  111111000000   0      01233467898889999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      |+||++.+.|.+++.      ..|+..++++++.+.++. ++.+|+..|
T Consensus        80 DvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             SEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            999999988865443      345677778888888877 566665554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.54  E-value=2.2e-07  Score=96.37  Aligned_cols=115  Identities=15%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCch--hhhhhhhcccCCCC-----c----------eeeecCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV--KGVAADLSHCNTPS-----Q----------VLDFTGPEE  154 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~--~g~~~dL~~~~~~~-----~----------v~~i~~t~d  154 (412)
                      +|||+|||+ |.||.++|..++.. |+. +|+++|+++.  .+.+..|.....+.     .          ...+..|+|
T Consensus        18 ~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           18 IKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            689999998 99999999999999 864 8999999874  22333343321110     0          112445677


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCC
Q 015172          155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVN  214 (412)
Q Consensus       155 ~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~  214 (412)
                      . +++++||+||++.+.|.+++.++    ..++..+....+.|.++. |+.+|+.. |-|..
T Consensus        96 ~-ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pg  152 (478)
T 3g79_A           96 F-SRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPG  152 (478)
T ss_dssp             G-GGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTT
T ss_pred             H-HHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChH
Confidence            5 58999999999998887554321    134566677777787777 66666554 33444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.51  E-value=2.2e-07  Score=96.40  Aligned_cols=118  Identities=17%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCC----CC---ce-----eeecCCCcHHh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNT----PS---QV-----LDFTGPEELAS  157 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~----~~---~v-----~~i~~t~d~~~  157 (412)
                      .+|||+|||+ |.||..+|..|+..  |.  +|+++|+++.+..  .+.....    +.   .+     ..+..++|+++
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~--~V~~~D~~~~~v~--~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~   82 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHI--TVTVVDMNTAKIA--EWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPK   82 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHH--HHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHH
Confidence            4689999998 99999999999988  56  9999999863211  1111110    00   00     01334578877


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCCC
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVNS  215 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~~  215 (412)
                      ++++||+||++.+.|.+.+.++.+ -..++..+.++++.|.++. |+.+|+.. |+|.+.
T Consensus        83 ~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt  141 (481)
T 2o3j_A           83 AIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKA  141 (481)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCH
Confidence            899999999999988765444333 1334566777888888877 56666553 677774

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.49  E-value=3.6e-07  Score=93.47  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC----CCC---c------eeeecCCCcHHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN----TPS---Q------VLDFTGPEELASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~----~~~---~------v~~i~~t~d~~~al~  160 (412)
                      |||+|||+ |.||..+|..++..|.  +|+++|+++.+..  .+....    .+.   .      ...+..++|++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKID--LINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            69999998 9999999999999998  9999999862211  111110    000   0      011334678887899


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-C---CeEEEEE-cCCCCC
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-P---DAFIHII-SNPVNS  215 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p---~aiviv~-TNPv~~  215 (412)
                      +||+||++.+.|..... .     .|+..++++++.+.++. +   +.+|+.. |+|.+.
T Consensus        76 ~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           76 DSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             TCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             cCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            99999999987764332 1     23445556666666655 5   6777655 677763

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.49  E-value=2.3e-07  Score=96.23  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC----CCC---ce------eeecCCCcHHhh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN----TPS---QV------LDFTGPEELASA  158 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~----~~~---~v------~~i~~t~d~~~a  158 (412)
                      ..|||+|||+ |.||..+|..|+..|.  +|+++|+++.+-.  .+....    .+.   .+      ..+..++|++++
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~v~--~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAKID--ILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            4699999998 9999999999999998  9999999862211  111111    010   01      123456788778


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +++||+||++.+.|.+.+.      .-|+..++++++.|.++. |+.+|+..|
T Consensus        82 ~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             hhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            9999999999988865433      234577778888888877 677775544

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.41  E-value=1e-06  Score=88.02  Aligned_cols=117  Identities=18%  Similarity=0.241  Sum_probs=78.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccC-CC-Cce-eeecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCN-TP-SQV-LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~-~~-~~v-~~i~~t~d~~~al~~aDiVI  166 (412)
                      .+|||+|||+ |.||..+|..|+..|.  +|.++|+++..  .....-.... .+ ..+ ..+..++|+++++++||+||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVi  104 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDIL  104 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEE
Confidence            3579999998 9999999999999998  99999998621  1111100000 01 001 12334578888899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHh
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQK  227 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~  227 (412)
                      ++.  |              ...++++++++..+. |+.+++.++|..+.-+..+++++.+.
T Consensus       105 laV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~  150 (356)
T 3k96_A          105 IVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATE  150 (356)
T ss_dssp             ECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHH
T ss_pred             ECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHH
Confidence            994  2              236788888998888 68888888886552111234555554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.39  E-value=4.3e-07  Score=93.02  Aligned_cols=112  Identities=21%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C----ceeeecCCCcHHhhcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S----QVLDFTGPEELASALK  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~----~v~~i~~t~d~~~al~  160 (412)
                      .+|||+|||+ |.||.++|..++. |.  +|+++|+++.+..  .+.....+       .    ....+..++|++++++
T Consensus        35 ~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~--~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           35 EFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVD--MLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHH--HHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhh--HHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4689999998 9999999999887 87  9999999872211  11111000       0    0112445688888999


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN  214 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~  214 (412)
                      +||+||++...|..+....     -|+..++++++.|.+..|+.+|+.- |.|..
T Consensus       109 ~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVG  158 (432)
T ss_dssp             TCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTT
T ss_pred             CCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChH
Confidence            9999999976554332222     2344555566666664477777654 45555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.38  E-value=6.1e-07  Score=90.92  Aligned_cols=110  Identities=21%  Similarity=0.314  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------Cc----eeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------SQ----VLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~~----v~~i~~t~d~~~al~~a  162 (412)
                      |||+|||+ |.||..+|..|+. |.  +|+++|+++.+..  .+.....+       ..    ...+..++++++++++|
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKVD--KINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHHH--HHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHC
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHHH--HHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCC
Confidence            69999998 9999999999998 87  9999999862211  11111110       00    00123356777789999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE-EcCCCC
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI-ISNPVN  214 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv-~TNPv~  214 (412)
                      |+||++...|.+++..+.|     +..+.++++.+.+..|+.+|+. .|||.+
T Consensus        75 Dvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g  122 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIG  122 (402)
T ss_dssp             SEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTT
T ss_pred             CEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCcc
Confidence            9999998777533333333     2455556666665347887766 699998

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.37  E-value=1.2e-06  Score=90.01  Aligned_cols=108  Identities=20%  Similarity=0.200  Sum_probs=76.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC----CCCc---------eeeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN----TPSQ---------VLDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~----~~~~---------v~~i~~t~d~~~al  159 (412)
                      ..+|+|||+ |+||..+|..|+..|+  +|++||+++.+-.  .|....    .+..         -..+..|+|+++++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence            468999998 9999999999999999  9999999973211  122111    0100         01234568998899


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ++||+||++.+.|.+++..     .-|+..++++++.|.++. ++.+|+..|
T Consensus        83 ~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             hcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            9999999999888654211     234567777788888777 677776654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.31  E-value=2e-06  Score=82.83  Aligned_cols=114  Identities=11%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ++||+|||+ |.||..++..++..|+ ..+|.++|+++...  .++.+. ..  +.   .+++..+++++||+||++.  
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~--~~l~~~-~g--i~---~~~~~~~~~~~aDvVilav--   71 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKL--DFFKEK-CG--VH---TTQDNRQGALNADVVVLAV--   71 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHH--HHHHHT-TC--CE---EESCHHHHHSSCSEEEECS--
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHH--HHHHHH-cC--CE---EeCChHHHHhcCCeEEEEe--
Confidence            479999998 9999999999999885 35899999986321  112211 11  22   1345667899999999995  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhh-C-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADN-C-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      |              ...++++++++..+ . ++.+++..++...    + ..+....+  ++.+++++
T Consensus        72 ~--------------p~~~~~vl~~l~~~~l~~~~iiiS~~agi~----~-~~l~~~l~--~~~~vvr~  119 (280)
T 3tri_A           72 K--------------PHQIKMVCEELKDILSETKILVISLAVGVT----T-PLIEKWLG--KASRIVRA  119 (280)
T ss_dssp             C--------------GGGHHHHHHHHHHHHHTTTCEEEECCTTCC----H-HHHHHHHT--CCSSEEEE
T ss_pred             C--------------HHHHHHHHHHHHhhccCCCeEEEEecCCCC----H-HHHHHHcC--CCCeEEEE
Confidence            1              12345666677766 4 6767754455554    3 44433332  24577776

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.29  E-value=1.6e-06  Score=81.68  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hh----------hhhhcccCCCCceeeecCCCcHHhhc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GV----------AADLSHCNTPSQVLDFTGPEELASAL  159 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~----------~~dL~~~~~~~~v~~i~~t~d~~~al  159 (412)
                      ..+||+|||+ |.||..+|..|+..|.  +|+++|+++..  ..          ..++... ... .    ...+.++++
T Consensus        18 ~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~----~~~~~~e~~   88 (245)
T 3dtt_A           18 QGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-HPH-V----HLAAFADVA   88 (245)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGG-STT-C----EEEEHHHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-cCc-e----eccCHHHHH
Confidence            4589999998 9999999999999998  99999998632  10          1122111 111 1    124566788


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      ++||+||++...+            .-.+.+.++.   ....++.+|+.++||.
T Consensus        89 ~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           89 AGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             hcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCC
Confidence            9999999995211            1122333331   2223788999999976

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.26  E-value=2.5e-06  Score=78.52  Aligned_cols=78  Identities=17%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ...+||+|||+ |.||..++..++..|.  +|.++|+++.                           ++++||+||++..
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~   66 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP   66 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC
Confidence            34689999998 9999999999999998  9999998632                           4689999999952


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                      ...++++++++.++.++.+++..+|+.+
T Consensus        67 ----------------~~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 ----------------YPALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             ----------------HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             ----------------cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                            1233455556655445888888899654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.26  E-value=4.3e-06  Score=80.31  Aligned_cols=122  Identities=16%  Similarity=0.292  Sum_probs=73.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhh-hcccCCCCc-eeeecCCC--cHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAAD-LSHCNTPSQ-VLDFTGPE--ELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~d-L~~~~~~~~-v~~i~~t~--d~~~al~~aDiVI  166 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|.++|+++..  ..... +.....+.. ...+..++  +..++++++|+||
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEE
Confidence            579999998 9999999999999998  99999997621  11110 000000000 00111111  2222345999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE-eccc
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTT  240 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi-Glt~  240 (412)
                      ++..              .  ....++.+.+.++. |+.+|+..+|..+    . .+.+.+.  +++.+++ |.+.
T Consensus        80 ~~v~--------------~--~~~~~v~~~l~~~l~~~~~iv~~~~g~~----~-~~~l~~~--~~~~~vi~g~~~  132 (316)
T 2ew2_A           80 ALTK--------------A--QQLDAMFKAIQPMITEKTYVLCLLNGLG----H-EDVLEKY--VPKENILVGITM  132 (316)
T ss_dssp             ECSC--------------H--HHHHHHHHHHGGGCCTTCEEEECCSSSC----T-HHHHTTT--SCGGGEEEEEEC
T ss_pred             EEec--------------c--ccHHHHHHHHHHhcCCCCEEEEecCCCC----c-HHHHHHH--cCCccEEEEEee
Confidence            9942              1  23466777888777 7888877788766    2 2333333  5566777 5443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.24  E-value=1.7e-06  Score=84.86  Aligned_cols=118  Identities=12%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +|||+|||+ |.||..++..|+..|+.  .+|.++|+++.......+....    +. +  +++..+++++||+||++..
T Consensus        22 ~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~-~--~~~~~e~~~~aDvVilav~   93 (322)
T 2izz_A           22 SMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VK-L--TPHNKETVQHSDVLFLAVK   93 (322)
T ss_dssp             CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CE-E--ESCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CE-E--eCChHHHhccCCEEEEEeC
Confidence            478999998 99999999999998831  2899999975311122232211    21 1  2456667899999999952


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                       |               ..+.++++.+.... |+.+|+..+|...  ..-+.+.+...  ++..+|++.
T Consensus        94 -~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~~--~~~~~vv~~  142 (322)
T 2izz_A           94 -P---------------HIIPFILDEIGADIEDRHIVVSCAAGVT--ISSIEKKLSAF--RPAPRVIRC  142 (322)
T ss_dssp             -G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCC--HHHHHHHHHTT--SSCCEEEEE
T ss_pred             -H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhhc--CCCCeEEEE
Confidence             1               23455666777666 6888877788776  21223333322  345567765

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.21  E-value=2.3e-06  Score=88.33  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=75.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCC----CC---ce-----eeecCCCcHHhh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNT----PS---QV-----LDFTGPEELASA  158 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~----~~---~v-----~~i~~t~d~~~a  158 (412)
                      +|||+|||+ |.||..+|..++..  |.  +|+++|+++.+..  .+.....    +.   .+     ..+..++|++++
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~--~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~   79 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRIN--AWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDA   79 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHH--HHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            579999998 99999999999988  66  9999999863211  1111100    00   00     123345778778


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCC
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVN  214 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~  214 (412)
                      +++||+||++.+.|........+ -..|+..+.+..+.+.++. |+.+|+.. |+|..
T Consensus        80 ~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g  136 (467)
T 2q3e_A           80 IKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVR  136 (467)
T ss_dssp             HHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTT
T ss_pred             HhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCch
Confidence            99999999998877543221000 0234566777788887776 66766554 56666

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.20  E-value=1.6e-06  Score=80.30  Aligned_cols=91  Identities=21%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEE-EecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHL-YDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L-~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +|||+|||+ |.||..++..++..|.  +|.+ +|+++..  ....++   .  ...  .  +++. ++++++|+||++.
T Consensus        23 mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~---g--~~~--~--~~~~-~~~~~aDvVilav   89 (220)
T 4huj_A           23 MTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRF---G--ASV--K--AVEL-KDALQADVVILAV   89 (220)
T ss_dssp             SCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHH---T--TTE--E--ECCH-HHHTTSSEEEEES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHh---C--CCc--c--cChH-HHHhcCCEEEEeC
Confidence            679999998 9999999999999998  8998 9987622  222211   1  111  1  1344 4689999999995


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      .                ...+.++++++.. .++.+++-++||.
T Consensus        90 p----------------~~~~~~v~~~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           90 P----------------YDSIADIVTQVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             C----------------GGGHHHHHTTCSC-CTTCEEEECCCCB
T ss_pred             C----------------hHHHHHHHHHhhc-cCCCEEEEcCCCC
Confidence            2                1234455566655 5677888889987

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.19  E-value=7.4e-06  Score=84.07  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C------ceeeecCCCcHHhh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S------QVLDFTGPEELASA  158 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~------~v~~i~~t~d~~~a  158 (412)
                      .|.+|+|||. |+||..+|..++..|+  +|+.+|+++.+-  ..|.....+       .      .-..+..|+|++++
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV--~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~a   94 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIV--ERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEA   94 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHH
Confidence            4679999998 9999999999999999  999999997221  111111100       0      00123346788889


Q ss_pred             cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE-EcCCCCC
Q 015172          159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI-ISNPVNS  215 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv-~TNPv~~  215 (412)
                      +++||++|+++++|.+++.. .|+ ..-....+.+++.++...+..+|++ -|=|...
T Consensus        95 i~~ad~~~I~VpTP~~~d~~-~Dl-~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGt  150 (444)
T 3vtf_A           95 VAATDATFIAVGTPPAPDGS-ADL-RYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGT  150 (444)
T ss_dssp             HHTSSEEEECCCCCBCTTSS-BCC-HHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTT
T ss_pred             HhcCCceEEEecCCCCCCCC-CCc-HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCch
Confidence            99999999999999766542 121 1112344555555554444444433 2556654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.19  E-value=6.3e-06  Score=80.59  Aligned_cols=118  Identities=16%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhh-hcccCCCCce-eeecCCCcHHhhcCCCcEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAAD-LSHCNTPSQV-LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~d-L~~~~~~~~v-~~i~~t~d~~~al~~aDiVI  166 (412)
                      ..++||+|||+ |.||..+|..|+..|.  +|.++ .++.  .....+ +......... ..+..+++.+ .++++|+||
T Consensus        17 ~~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLVL   91 (318)
T ss_dssp             ---CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEEE
T ss_pred             ccCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEEE
Confidence            44689999998 9999999999999998  99999 6652  111110 1100000001 1122345665 579999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      ++....                -++++++.+..+. |+.+|+..+|..+    . .+.+.+.  ++ +++++
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~----~-~~~l~~~--~~-~~vl~  139 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVE----N-ADTLRSL--LE-QEVAA  139 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSS----H-HHHHHHH--CC-SEEEE
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCC----c-HHHHHHH--cC-CcEEE
Confidence            994211                2366777887776 7889988999998    2 2344555  55 77775

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.15  E-value=2.7e-06  Score=80.08  Aligned_cols=90  Identities=17%  Similarity=0.282  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +|||+|||+ |.||..++..++..|..  .+|.++|.++..          ..  +.   .+++++++++++|+||++..
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~----------~g--~~---~~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN----------TT--LN---YMSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS----------SS--SE---ECSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc----------Cc--eE---EeCCHHHHHhcCCEEEEEeC
Confidence            479999998 99999999999888831  289999987532          01  11   13466677899999999953


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                       +               ..++++++++..+.++.+++..+|..+
T Consensus        68 -~---------------~~~~~v~~~l~~~l~~~~vv~~~~gi~   95 (262)
T 2rcy_A           68 -P---------------DIAGSVLNNIKPYLSSKLLISICGGLN   95 (262)
T ss_dssp             -T---------------TTHHHHHHHSGGGCTTCEEEECCSSCC
T ss_pred             -H---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence             1               124556667777678888877788877

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.14  E-value=3.8e-06  Score=81.81  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..+|||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  ++.+..    .   ..++++++++++||+||++..
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~---~~~~~~~~~~~~aDvvi~~vp   86 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----A---SVCESPAEVIKKCKYTIAMLS   86 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----C---EECSSHHHHHHHCSEEEECCS
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----C---eEcCCHHHHHHhCCEEEEEcC
Confidence            45789999998 9999999999999998  9999999863211  122211    1   124567788999999999953


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~T  210 (412)
                      .+               ..++++.   +.+.+.. ++.+|+..|
T Consensus        87 ~~---------------~~~~~v~~~~~~l~~~l~~g~~vv~~s  115 (310)
T 3doj_A           87 DP---------------CAALSVVFDKGGVLEQICEGKGYIDMS  115 (310)
T ss_dssp             SH---------------HHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             CH---------------HHHHHHHhCchhhhhccCCCCEEEECC
Confidence            22               2234555   5555555 677776554

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.13  E-value=2.5e-06  Score=85.13  Aligned_cols=103  Identities=8%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-------CCCeEEEEecCch-h--hhhhhhccc----CC-CC-ce-eeecCCCcH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-------LVSALHLYDVMNV-K--GVAADLSHC----NT-PS-QV-LDFTGPEEL  155 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-------l~~ev~L~Di~~~-~--g~~~dL~~~----~~-~~-~v-~~i~~t~d~  155 (412)
                      +|||+|||+ |.||..+|..|+..|       .  +|.++|.++. .  .....+...    .. +. .+ ..+..++|+
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~   97 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDL   97 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESST
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCH
Confidence            479999998 999999999999887       6  8999998753 0  012222211    00 00 00 112234677


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh----hC-CCeEEEEEcCCCC
Q 015172          156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD----NC-PDAFIHIISNPVN  214 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~----~~-p~aiviv~TNPv~  214 (412)
                      ++++++||+||++.              .  ...++++++.+..    +. |+.+++..+|..+
T Consensus        98 ~ea~~~aDvVilav--------------~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           98 ASVINDADLLIFIV--------------P--CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             HHHHTTCSEEEECC--------------C--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             HHHHcCCCEEEEcC--------------C--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            77889999999994              2  1457778888877    66 6888887787654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.13  E-value=8e-06  Score=80.03  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHh-hcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELAS-ALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~-al~~aDiVIiaag  170 (412)
                      .+||+|||+ |.||..+|..+...|+..+|+++|.++. ...+.+   ...   ....  ++++++ ++++||+||++..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~---~G~---~~~~--~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD---LGI---IDEG--TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH---TTS---CSEE--ESCTTGGGGGCCSEEEECSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH---CCC---cchh--cCCHHHHhhccCCEEEEeCC
Confidence            479999998 9999999999999997668999999862 112211   111   1111  346666 7899999999952


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .                ..+.++++++.++. |+++|+.++
T Consensus       104 ~----------------~~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 V----------------RTFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             G----------------GGHHHHHHHHHHHSCTTCEEEECC
T ss_pred             H----------------HHHHHHHHHHhhccCCCcEEEECC
Confidence            1                11345556666666 788875443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.11  E-value=3e-06  Score=83.44  Aligned_cols=103  Identities=12%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-------CCCeEEEEecCch-----hhhhhhhccc--CC-CC-ce-eeecCCCcH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-------LVSALHLYDVMNV-----KGVAADLSHC--NT-PS-QV-LDFTGPEEL  155 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-------l~~ev~L~Di~~~-----~g~~~dL~~~--~~-~~-~v-~~i~~t~d~  155 (412)
                      +|||+|||+ |.||..+|..|+..|       .  +|.++|+++.     ......-.+.  .. +. .+ ..+..++|+
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            379999998 999999999999887       6  9999999763     2221111110  00 00 00 112234677


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      ++++++||+||++..              .  ..+.++++++..+. |+++++..+|..+
T Consensus        85 ~~~~~~aD~Vilav~--------------~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAEDADILIFVVP--------------H--QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHTTCSEEEECCC--------------G--GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHcCCCEEEEeCC--------------H--HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            778999999999942              1  23566777787776 6888888787544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.11  E-value=4.3e-06  Score=80.24  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||+ |.||..++..++..|+  +|+++|+++.+..  ++.+..    .   ..++++++++++||+||++...+ 
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~---~~~~~~~~~~~~aDvvi~~vp~~-   68 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----A---ERAATPCEVVESCPVTFAMLADP-   68 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----C---EECSSHHHHHHHCSEEEECCSSH-
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----C---eecCCHHHHHhcCCEEEEEcCCH-
Confidence            79999998 9999999999999998  9999999863211  122211    1   12467788889999999994211 


Q ss_pred             CCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEc
Q 015172          174 KPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIIS  210 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~T  210 (412)
                                    ..++++.   +.+.+.. |+.+++..+
T Consensus        69 --------------~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           69 --------------AAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             --------------HHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             --------------HHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence                          2334455   5565565 677775554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.10  E-value=4.3e-06  Score=82.28  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC----CC-Cc-eeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN----TP-SQ-VLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~----~~-~~-v~~i~~t~d~~~al~~aDiVI  166 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|.++|.++..   ..+....    .+ .. ...+..+++++ .+.++|+||
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~Vi   75 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGATL---QALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVVI   75 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHHHH---HHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChHHH---HHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEEE
Confidence            479999998 9999999999999998  99999985311   1111111    00 00 01122346776 479999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ++..                ...+.++++.+..+. |+++|+.+.|..
T Consensus        76 lavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           76 VAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             ECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            9942                123557777887776 789998889994

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.09  E-value=8.4e-06  Score=79.37  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=74.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhh-hh--cccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAA-DL--SHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~-dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|.++|.++...... .+  ........+..+..+++.+ .+.++|+||++.
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilav   77 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGL   77 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEec
Confidence            379999998 9999999999999998  999999975211100 00  0000001111122235665 579999999994


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      -..                -..++++.+..+. |+.+|+.+.|-.+    . .+.+.+.  ++.++|++-
T Consensus        78 k~~----------------~~~~~l~~l~~~l~~~~~iv~l~nGi~----~-~~~l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           78 KTF----------------ANSRYEELIRPLVEEGTQILTLQNGLG----N-EEALATL--FGAERIIGG  124 (312)
T ss_dssp             CGG----------------GGGGHHHHHGGGCCTTCEEEECCSSSS----H-HHHHHHH--TCGGGEEEE
T ss_pred             CCC----------------CcHHHHHHHHhhcCCCCEEEEecCCCC----c-HHHHHHH--CCCCcEEEE
Confidence            211                1234566677666 7888888899887    2 2334455  666787754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.08  E-value=4e-06  Score=78.81  Aligned_cols=97  Identities=11%  Similarity=0.199  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +|||+|||+ |.||..++..+...|+.  .+|+++|+++.+..  ++... ..  +.   .+.+.+++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~--~~~~~-~g--~~---~~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTANLK--NASEK-YG--LT---TTTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHH--HHHHH-HC--CE---ECSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHH--HHHHH-hC--CE---EeCChHHHHHhCCEEEEEe-
Confidence            479999998 99999999999998853  48999999862211  12110 00  11   2356677889999999995 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                       |              ...++++.+++.++. |+.+++..++...
T Consensus        72 -~--------------~~~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 -K--------------PDLYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -C--------------TTTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -C--------------HHHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1              123456667777766 6777754455554

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.08  E-value=5e-06  Score=78.65  Aligned_cols=95  Identities=12%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCe-EEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSA-LHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-v~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .|||+|||+ |.||..++..+...|+  + |.++|+++....  ++... ..  +.   .++++++.++++|+||++.  
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~~--~~~~~-~g--~~---~~~~~~~~~~~~Dvvi~av--   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEESAR--ELAQK-VE--AE---YTTDLAEVNPYAKLYIVSL--   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHHHH--HHHHH-TT--CE---EESCGGGSCSCCSEEEECC--
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHH--HHHHH-cC--Cc---eeCCHHHHhcCCCEEEEec--
Confidence            479999998 9999999999998887  6 899999862211  11111 01  11   1346767789999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                  ..+  ...++++.+.+.. ++.+++..++-..
T Consensus        77 ------------~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~  106 (266)
T 3d1l_A           77 ------------KDS--AFAELLQGIVEGKREEALMVHTAGSIP  106 (266)
T ss_dssp             ------------CHH--HHHHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred             ------------CHH--HHHHHHHHHHhhcCCCcEEEECCCCCc
Confidence                        222  2366777787777 7888866665443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.07  E-value=2.6e-05  Score=71.83  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC-CCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT-PSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~-~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.|||.|+||+|++|..++..|+..|.  +|++++++.....  ++.+... .....+++  .++.+++.++|+||.++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERGASDIVVANLE--EDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTTCSEEEECCTT--SCCGGGGTTCSEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCCCceEEEcccH--HHHHHHHcCCCEEEECCC
Confidence            358999999999999999999999998  9999999863211  1111111 11111222  455678999999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....  .+....+..|+.-...+++.+.+....-+|
T Consensus        94 ~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  127 (236)
T 3e8x_A           94 SGPH--TGADKTILIDLWGAIKTIQEAEKRGIKRFI  127 (236)
T ss_dssp             CCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCC--CCccccchhhHHHHHHHHHHHHHcCCCEEE
Confidence            6532  344556677888888888888877644444

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.06  E-value=1e-05  Score=78.20  Aligned_cols=90  Identities=22%  Similarity=0.339  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  .+.+..    .   ..+++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~---~~~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----A---TLADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----C---EECSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----C---EEcCCHHHHHh-CCEEEEECCCh
Confidence            368999998 9999999999999998  9999999863211  122211    1   22467888888 99999995321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                                     ..++++++.+.+.. |+.+|+..|
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeC
Confidence                           23455557777766 677765544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.06  E-value=8.8e-06  Score=79.64  Aligned_cols=66  Identities=23%  Similarity=0.327  Sum_probs=50.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+|||+|||+ |.||..+|..++..|.  +|+++|+++.+.  .++....    +.   .++++++++++||+||++.
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~l~~~g----~~---~~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPARA--ASLAALG----AT---IHEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTT----CE---EESSHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHHH--HHHHHCC----CE---eeCCHHHHHhcCCEEEEEC
Confidence            3589999998 9999999999999998  999999986321  1222221    11   2357788899999999995

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.04  E-value=5.1e-06  Score=79.75  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |+||+|||+ |.||..++..++..|+  +|+++|+++.+..  ++.+..    .   ..++++++++++||+||++...+
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~---~~~~~~~~~~~~advvi~~v~~~   68 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----A---RQASSPAEVCAACDITIAMLADP   68 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----C---EECSCHHHHHHHCSEEEECCSSH
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----C---eecCCHHHHHHcCCEEEEEcCCH
Confidence            579999998 9999999999999998  9999999863211  122211    1   12457778889999999995211


Q ss_pred             CCCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEc
Q 015172          173 RKPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIIS  210 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~T  210 (412)
                                     ..++++.   +.+.+.. |+.+++..|
T Consensus        69 ---------------~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           69 ---------------AAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             ---------------HHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             ---------------HHHHHHHcCchhhhhcccCCCEEEECC
Confidence                           2344555   5565555 677765544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.03  E-value=7.6e-06  Score=79.95  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=76.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhh---hcccCCC-CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAAD---LSHCNTP-SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~d---L~~~~~~-~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|.++|.++.......   +.....+ ..+..+..+++.+++.+++|+||++
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            379999998 9999999999999998  9999999762111110   1110111 1111122235666544599999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-ccc
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTL  241 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~L  241 (412)
                      .-...                ..++++.+..+. |+.+|+.+.|-.+..     +.+.+.  ++.++|++- +..
T Consensus        79 vK~~~----------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~-----~~l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           79 IKVVE----------------GADRVGLLRDAVAPDTGIVLISNGIDIE-----PEVAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             CCCCT----------------TCCHHHHHTTSCCTTCEEEEECSSSSCS-----HHHHHH--STTSCEEEEEEEE
T ss_pred             cCCCC----------------hHHHHHHHHhhcCCCCEEEEeCCCCChH-----HHHHHH--CCCCcEEEEEEEe
Confidence            53221                123445566655 788888889988732     333444  566777754 554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.02  E-value=1.8e-05  Score=76.99  Aligned_cols=110  Identities=19%  Similarity=0.286  Sum_probs=75.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+.|||.|+||+|++|..++..|+..|.  +|+.+|.+...        ........+++...++.++++++|+||.+|+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~--------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG--------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS--------SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC--------CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            4568999999999999999999999998  99999987522        0011111122222345567899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..........+.+..|+.....+++.+.+....-+|.+-|
T Consensus        87 ~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           87 FMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             CCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            6543333346677889999999999988765444544434

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.01  E-value=2.7e-05  Score=74.11  Aligned_cols=97  Identities=13%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC-CCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK-GVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-~aDiVIiaag~  171 (412)
                      |+||+|||+ |.||..++..+...|...+|+++|.++....  .+.....   ....  ++++++.++ +||+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~---~~~~--~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGI---IDEG--TTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTS---CSEE--ESCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCC---cccc--cCCHHHHhcCCCCEEEEcCCH
Confidence            469999998 9999999999998886448999999862211  1111111   0011  245666788 99999999421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                                      ....+++.++..+. |+++|+.++|..
T Consensus        73 ----------------~~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 ----------------RTFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ----------------HHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ----------------HHHHHHHHHHHhhCCCCcEEEECCCCc
Confidence                            12335555665555 788887777654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.01  E-value=2e-05  Score=76.25  Aligned_cols=111  Identities=21%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .+|||.|+||+|++|..++..|+..|.  +|+++|.+....  .++.+........+++...++.++++++|+||.+++.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            357999999999999999999999997  999999875211  1122211111011222223455678999999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ......+..+.+..|+.....+++.+.+....-+|
T Consensus        88 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  122 (342)
T 2x4g_A           88 YPSRPRRWQEEVASALGQTNPFYAACLQARVPRIL  122 (342)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHTCSCEE
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            43222334556778999899999988877533333

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.00  E-value=4.4e-06  Score=82.90  Aligned_cols=101  Identities=13%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCC-CC-ce-eeecCCCcHHhhcCCCcEEEEcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT-PS-QV-LDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~-~~-~v-~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ||+|||+ |.||..+|..|+..|.  +|.++|.++..  ........... +. .+ ..+..+++++++++++|+||++.
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            9999998 9999999999998887  99999997621  11111100000 00 00 01223457777889999999994


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHH----HHhhC-C-CeEEEEEcCCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEA----VADNC-P-DAFIHIISNPVN  214 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~----i~~~~-p-~aiviv~TNPv~  214 (412)
                      .                ...+.+++..    +..+. | +.+|+..+|..+
T Consensus        94 ~----------------~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           94 P----------------TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             C----------------HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             C----------------hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            2                1234555555    65554 6 788877888765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.99  E-value=7.6e-06  Score=79.29  Aligned_cols=93  Identities=19%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||+ |.||..+|..|+..|+  +|+++|+++.+.  ..+.....    ..+  ++++++++++||+||++...+
T Consensus         7 ~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g~----~~~--~~~~~e~~~~aDvvi~~vp~~   75 (303)
T 3g0o_A            7 DFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQAC--ANLLAEGA----CGA--AASAREFAGVVDALVILVVNA   75 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTC----SEE--ESSSTTTTTTCSEEEECCSSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHcCC----ccc--cCCHHHHHhcCCEEEEECCCH
Confidence            479999998 9999999999999998  999999986321  11222111    111  245667889999999995321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEcC
Q 015172          173 RKPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIISN  211 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~TN  211 (412)
                                     ..++++.   +.+.+.. |+.+|+..|+
T Consensus        76 ---------------~~~~~v~~~~~~l~~~l~~g~ivv~~st  103 (303)
T 3g0o_A           76 ---------------AQVRQVLFGEDGVAHLMKPGSAVMVSST  103 (303)
T ss_dssp             ---------------HHHHHHHC--CCCGGGSCTTCEEEECSC
T ss_pred             ---------------HHHHHHHhChhhHHhhCCCCCEEEecCC
Confidence                           2234444   5555555 6777766553

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.99  E-value=1.5e-05  Score=76.19  Aligned_cols=96  Identities=17%  Similarity=0.125  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||+ |.||..++..+...|...+|.++|+++....  .+.....   ...  .+++++++++++|+||++..  
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~---~~~--~~~~~~~~~~~aDvVilavp--   75 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSRD--IALERGI---VDE--ATADFKVFAALADVIILAVP--   75 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHHH--HHHHTTS---CSE--EESCTTTTGGGCSEEEECSC--
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH--HHHHcCC---ccc--ccCCHHHhhcCCCEEEEcCC--
Confidence            479999998 9999999999988743238999999862211  1111111   001  12456667899999999942  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhh-C-CCeEEEEEcCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADN-C-PDAFIHIISNP  212 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~-p~aiviv~TNP  212 (412)
                                    .....++++++.++ . |+.+|+.++|.
T Consensus        76 --------------~~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 --------------IKKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             --------------HHHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             --------------HHHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                          12236677777776 5 67777655543

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.99  E-value=1.1e-05  Score=78.46  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec--CchhhhhhhhcccCC----CCceeeecCCC--cHHhhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCNT----PSQVLDFTGPE--ELASALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di--~~~~g~~~dL~~~~~----~~~v~~i~~t~--d~~~al~~aDiV  165 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|.  ++...  ..+.....    ...+..+..++  +++++++++|+|
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEIL--KSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHH--HHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHHH--HHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence            68999998 9999999999999898  9999999  65211  11211110    00001112234  676778999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      |++...+                .+.++++.+.. . |+.+|+..+|..
T Consensus        76 i~~v~~~----------------~~~~v~~~i~~-l~~~~~vv~~~ng~  107 (335)
T 1txg_A           76 LLGVSTD----------------GVLPVMSRILP-YLKDQYIVLISKGL  107 (335)
T ss_dssp             EECSCGG----------------GHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred             EEcCChH----------------HHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence            9995311                23445556666 5 688887788876

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.99  E-value=1.1e-05  Score=80.62  Aligned_cols=92  Identities=13%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCC---cEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGV---NVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a---DiVIiaa  169 (412)
                      +|||+|||. |.||..+|..|+..|.  +|++||+++.+.  .++....       +..++++++.++++   |+||++.
T Consensus        22 ~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~~~--~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVNAV--QALEREG-------IAGARSIEEFCAKLVKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeC
Confidence            479999998 9999999999999998  999999986321  1222211       12345677777888   9999994


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNP  212 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNP  212 (412)
                      .              ..  .+.+++..+.+.. |+.+||..+|.
T Consensus        90 p--------------~~--~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           90 P--------------AA--VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             C--------------GG--GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             C--------------HH--HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            2              12  3455566777776 78888766653

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.98  E-value=1.7e-05  Score=76.03  Aligned_cols=91  Identities=21%  Similarity=0.275  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||++|.||..++..|...|+  +|+++|+++....  ++.+..    +.   .+ +..+++++||+||++..  
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~--~~~~~g----~~---~~-~~~~~~~~aDvVi~av~--   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRD--RLQGMG----IP---LT-DGDGWIDEADVVVLALP--   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHH--HHHHTT----CC---CC-CSSGGGGTCSEEEECSC--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhcC----CC---cC-CHHHHhcCCCEEEEcCC--
Confidence            47999999669999999999999998  9999999762211  121111    11   11 34457899999999942  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                                  .+  .+.++.+++..+. |+.+|+..++
T Consensus        77 ------------~~--~~~~v~~~l~~~l~~~~ivv~~s~  102 (286)
T 3c24_A           77 ------------DN--IIEKVAEDIVPRVRPGTIVLILDA  102 (286)
T ss_dssp             ------------HH--HHHHHHHHHGGGSCTTCEEEESCS
T ss_pred             ------------ch--HHHHHHHHHHHhCCCCCEEEECCC
Confidence                        12  2567778887776 6887744343

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=9.4e-06  Score=74.07  Aligned_cols=105  Identities=15%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||.|+||+|++|..++..|+..|.  +|+++|.+.....  ++. ........+++...++.++++++|+||.++|..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            57999999999999999999999997  9999999752211  110 000000012222234567889999999998764


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ..    ..+.+..|+.....+++.+.+....-+|
T Consensus        79 ~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           79 WN----NPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             ---------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CC----ChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            21    1224566888888999998876644444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.96  E-value=3.5e-05  Score=73.92  Aligned_cols=106  Identities=24%  Similarity=0.233  Sum_probs=74.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||.|+||+|++|+.++..|+..|.  +|+.+|.+.....   +.  .......++. ..++.++++++|+||.+++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~--~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---IN--DYEYRVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC----------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CC--ceEEEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            47999999999999999999999998  9999998742111   11  1111112333 355677899999999999865


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      ...  +..+.+..|+...+.+++.+.+....-+|.+
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~  107 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNISNIVYA  107 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            433  4445567889999999999988765544433

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.95  E-value=1.2e-05  Score=76.43  Aligned_cols=98  Identities=17%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC-CCce-eeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT-PSQV-LDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~-~~~v-~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|.++...  .++..... .... ..+. .++. ++++++|+||++...
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~d~vi~~v~~   73 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPY--CSVNLVETDGSIFNESLT-ANDP-DFLATSDLLLVTLKA   73 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSE--EEEEEECTTSCEEEEEEE-ESCH-HHHHTCSEEEECSCG
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCccce--eeEEEEcCCCceeeeeee-ecCc-cccCCCCEEEEEecH
Confidence            68999998 9999999999999998  999999976211  11221110 0101 1122 2344 478999999999532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      +                .+.++++.+..+. |+.+|+..+|..+
T Consensus        74 ~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~  101 (291)
T 1ks9_A           74 W----------------QVSDAVKSLASTLPVTTPILLIHNGMG  101 (291)
T ss_dssp             G----------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             H----------------hHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence            1                1355666777666 6888877888876

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.94  E-value=3e-05  Score=70.38  Aligned_cols=104  Identities=21%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|++++++.....  ++..........+++...+  +++.++|+||.++|...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKAA--DRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccccc--cccCCCceEEecccccccH--hhcccCCEEEECCccCC
Confidence            6899999999999999999999998  9999999762211  1211111111112221122  47899999999998763


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+..     ...|+...+.+++.+.+..  ..++++|
T Consensus        75 ~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           75 GSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             TSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             Ccch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            2222     3457888888888887765  4444444

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.94  E-value=4.7e-05  Score=68.69  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|++++++.....  ++. ........+++...+  +++.++|+||.++|.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~-~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTH-KDINILQKDIFDLTL--SDLSDQNVVVDAYGISP   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHC-SSSEEEECCGGGCCH--HHHTTCSEEEECCCSST
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hcc-CCCeEEeccccChhh--hhhcCCCEEEECCcCCc
Confidence            6899999999999999999999998  9999999863211  111 111110112221122  47899999999998753


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..       ...|....+.+++.+.+... ..++++|
T Consensus        74 ~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~S  102 (221)
T 3ew7_A           74 DE-------AEKHVTSLDHLISVLNGTVS-PRLLVVG  102 (221)
T ss_dssp             TT-------TTSHHHHHHHHHHHHCSCCS-SEEEEEC
T ss_pred             cc-------cchHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence            21       23477888888888877532 3344444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.93  E-value=3.3e-05  Score=70.40  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=65.3

Q ss_pred             Cce-EEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchhhhhhhh--cccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFK-VAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVKGVAADL--SHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~K-V~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~g~~~dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ||| |.|+||+|++|..++..|+ ..|.  +|++++.+... ...++  ..........+++-..+++++++++|+||.+
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            556 9999999999999999999 8898  99999987530 11222  1111101111222223456678999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|.+             |+. .+.+++.+++....-+|.+.|
T Consensus        81 ag~~-------------n~~-~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           81 AMES-------------GSD-MASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             CCCC-------------HHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCC-------------Chh-HHHHHHHHHhcCCCeEEEEee
Confidence            8753             334 777788877655444443433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.93  E-value=2.4e-05  Score=75.72  Aligned_cols=77  Identities=16%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             CceEEEEc-CCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLG-AAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIG-AaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ++||+||| + |.||..++..+...|+  +|.++|.++.                      .+..+++++||+||++...
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCH
Confidence            46899999 7 9999999999999998  9999998642                      1345678999999999521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +                .+.++++++..+. |+++|+.++
T Consensus        76 ~----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           76 N----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             G----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             H----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence            1                2556667777666 677765543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.91  E-value=1.3e-05  Score=78.60  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC---C-C-CceeeecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN---T-P-SQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~---~-~-~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ..+||+|||+ |.||..++..|+..|.  +|.++|.++.+..  .+....   . + ..+ .+..++++++ ++++|+||
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~~--~l~~~g~~~~~~~~~~-~~~~~~~~~~-~~~aDvVi   85 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIVD--LINVSHTSPYVEESKI-TVRATNDLEE-IKKEDILV   85 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHHSCBTTBTTCCC-CSEEESCGGG-CCTTEEEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHhCCcccCCCCee-eEEEeCCHHH-hcCCCEEE
Confidence            3589999998 9999999999999998  9999999752211  121111   0 0 001 1222456776 89999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      ++...                ..++++++.+..  ++.++|.++|..+
T Consensus        86 l~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           86 IAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             ECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            99421                224444544544  7888888898765

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=97.90  E-value=9.1e-05  Score=70.66  Aligned_cols=165  Identities=19%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|+.+|.+.....  ++.+........++.... +.+++++ |+||.+|+.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~   74 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPE   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCC
Confidence            6899999999999999999999998  9999998652111  111111100011222112 4456677 99999998653


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC---CcHHHHHHHHHHhCCCCCCCeEeccccchHHHHH
Q 015172          174 KP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN---STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANT  248 (412)
Q Consensus       174 k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~---~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~  248 (412)
                      ..  ..+....+..|+.....+++.+.+....-+|.+-|.-+-   ...|+ .    .....+|....|.+-+...++-.
T Consensus        75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~-~----e~~~~~p~~~Y~~sK~~~e~~~~  149 (312)
T 3ko8_A           75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPT-P----EEEPYKPISVYGAAKAAGEVMCA  149 (312)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSB-C----TTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCC-C----CCCCCCCCChHHHHHHHHHHHHH
Confidence            21  223455667899999999999887764444433331100   00000 0    00112233333332222233444


Q ss_pred             HHHHHcCCCCCCee-eeEEccc
Q 015172          249 FVAQKKNLKLIDVD-VPVVGGH  269 (412)
Q Consensus       249 ~la~~l~v~~~~V~-~~ViG~h  269 (412)
                      .+++.++++..-++ ..++|..
T Consensus       150 ~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          150 TYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHhCCCEEEEeeccccCcC
Confidence            45566677766666 3677764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.90  E-value=5.3e-05  Score=71.90  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||+ |.||..++..+...|.  +|+++|.++....  .+.......   ..  ++++++. +++|+||++..   
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g~~~---~~--~~~~~~~-~~~D~vi~av~---   66 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCE--KAVERQLVD---EA--GQDLSLL-QTAKIIFLCTP---   66 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTTSCS---EE--ESCGGGG-TTCSEEEECSC---
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhCCCCc---cc--cCCHHHh-CCCCEEEEECC---
Confidence            68999998 9999999999999998  9999999862211  121111110   11  2466666 99999999942   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                                   ...+.++++++..+. |+.+|+.++|
T Consensus        67 -------------~~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             -------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence                         124566777777766 6887766544

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.89  E-value=1.8e-05  Score=75.63  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||+ |.||..++..+...|.  +|+++| ++....  .+....    +   ...+++++.++++|+||++...+
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~---~~~~~~~~~~~~~D~vi~~vp~~   69 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----A---VNVETARQVTEFADIIFIMVPDT   69 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----C---BCCSSHHHHHHTCSEEEECCSSH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----C---cccCCHHHHHhcCCEEEEECCCH
Confidence            579999998 9999999999999998  999999 752111  111111    1   12356777889999999995322


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHH---HHHhhC-CCeEEEEEcCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVE---AVADNC-PDAFIHIISNP  212 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~---~i~~~~-p~aiviv~TNP  212 (412)
                                     ..++++..   .+.+.. |+.+|+..+|.
T Consensus        70 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~s~~   98 (295)
T 1yb4_A           70 ---------------PQVEDVLFGEHGCAKTSLQGKTIVDMSSI   98 (295)
T ss_dssp             ---------------HHHHHHHHSTTSSTTSCCTTEEEEECSCC
T ss_pred             ---------------HHHHHHHhCchhHhhcCCCCCEEEECCCC
Confidence                           12344444   555555 67777766665

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.88  E-value=2e-05  Score=75.56  Aligned_cols=92  Identities=15%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||+ |.||..++..+...|.  +|.++|+++....  .+....    +.   .+.++++.++++|+||++...+ 
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~v~~~-   72 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAIA--DVIAAG----AE---TASTAKAIAEQCDVIITMLPNS-   72 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTT----CE---ECSSHHHHHHHCSEEEECCSSH-
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHCC----Ce---ecCCHHHHHhCCCEEEEECCCH-
Confidence            69999998 9999999999999998  9999999862211  122111    11   2356777889999999995322 


Q ss_pred             CCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEcCC
Q 015172          174 KPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIISNP  212 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~TNP  212 (412)
                                    ..++++.   +.+.+.. |+.+|+..+|-
T Consensus        73 --------------~~~~~~~~~~~~l~~~l~~~~~vv~~s~~  101 (299)
T 1vpd_A           73 --------------PHVKEVALGENGIIEGAKPGTVLIDMSSI  101 (299)
T ss_dssp             --------------HHHHHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred             --------------HHHHHHHhCcchHhhcCCCCCEEEECCCC
Confidence                          1223333   3454555 78888766654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.87  E-value=2.1e-05  Score=71.57  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||+|.||..++..|+..|.  +|+++|.++..  ....++........+   . .++++++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASI---T-GMKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCE---E-EEEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCC---C-hhhHHHHHhcCCEEEEeCCh
Confidence            6899999449999999999999998  99999997521  111111100000112   1 24566788999999999531


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                      ...+++.+++.+..++.+++..+|+.+
T Consensus        75 ----------------~~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ----------------EHAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ----------------HHHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ----------------hhHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                            113344555554446888888888654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.87  E-value=2.3e-05  Score=73.78  Aligned_cols=91  Identities=12%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||+|||+ |.||..++..++..| .  +|.++|+++....  .+... ..  +. .  +.++++.+ ++|+||++..  
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~~~--~~~~~-~g--~~-~--~~~~~~~~-~~D~vi~~v~--   66 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKRE--RLEKE-LG--VE-T--SATLPELH-SDDVLILAVK--   66 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHHH--HHHHH-TC--CE-E--ESSCCCCC-TTSEEEECSC--
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHHHH--HHHHh-cC--CE-E--eCCHHHHh-cCCEEEEEeC--
Confidence            68999998 999999999999888 6  9999999862211  12111 01  11 1  23455577 9999999942  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                    ...++++.+.+..  ++.+|+..+|..+
T Consensus        67 --------------~~~~~~v~~~l~~--~~~ivv~~~~g~~   92 (263)
T 1yqg_A           67 --------------PQDMEAACKNIRT--NGALVLSVAAGLS   92 (263)
T ss_dssp             --------------HHHHHHHHTTCCC--TTCEEEECCTTCC
T ss_pred             --------------chhHHHHHHHhcc--CCCEEEEecCCCC
Confidence                          1234555555544  3777766667766

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.86  E-value=3.1e-05  Score=77.82  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=62.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEe---cCchhhhhhh-hcccC------CC-C---c-eeeec-CCCcH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYD---VMNVKGVAAD-LSHCN------TP-S---Q-VLDFT-GPEEL  155 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~D---i~~~~g~~~d-L~~~~------~~-~---~-v~~i~-~t~d~  155 (412)
                      +|||+|||+ |.||..+|..|+. .|.  +|.++|   .++..  ... +....      .. .   . ...+. .++|+
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAER--WTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHH--HHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHH--HHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            479999998 9999999999988 487  999999   54311  111 11100      00 1   0 01111 35678


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEE
Q 015172          156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHI  208 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv  208 (412)
                      +++++++|+||++...+                .++++++++..+. |+.+|+.
T Consensus        77 ~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           77 EIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            77899999999995322                1356778888777 6777643

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.86  E-value=3.2e-05  Score=73.58  Aligned_cols=92  Identities=14%  Similarity=0.071  Sum_probs=60.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||||+|||+ |.||..++..+.. |.  +|+++|+++.+..  .+....    ....   + +++.++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            478999998 9999999999998 87  8999999862211  111111    1111   1 445788999999995322


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                                     ..++++.+.+.+.. |+.+|+..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           12344556666655 688887777754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.86  E-value=1.4e-05  Score=72.78  Aligned_cols=101  Identities=20%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecC-CCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTG-PEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~-t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|++.....  ++  ........+++. ..++.++++++|+||.++|..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            6899999999999999999999997  9999999862111  11  000000112222 234667889999999999876


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ...      .+..|+.....+++.+++....-+|
T Consensus        75 ~~~------~~~~n~~~~~~l~~a~~~~~~~~iv  102 (219)
T 3dqp_A           75 GKS------LLKVDLYGAVKLMQAAEKAEVKRFI  102 (219)
T ss_dssp             TSS------CCCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             CCC------cEeEeHHHHHHHHHHHHHhCCCEEE
Confidence            421      2455666677778877765533333

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.86  E-value=2e-05  Score=76.78  Aligned_cols=114  Identities=15%  Similarity=0.047  Sum_probs=74.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-------CCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-------NTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-------~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +|||.|+||+|++|..++..|+..|.  +|+.+|...  ......++...       .......++....++.++++++|
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            47999999999999999999999998  999999865  11111222211       10000112222234567789999


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          164 VVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       164 iVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      +||.+|+....+.  .+..+.+..|+.....+++.+.+....-+|.+
T Consensus       103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~  149 (351)
T 3ruf_A          103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYA  149 (351)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            9999998642111  22345567888889999999887764444433

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.85  E-value=5.1e-05  Score=74.44  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHh--CCCCCeEEEEecCchh-----------hhhhhhcccCCCCceeeecCCCcHHhh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKM--SPLVSALHLYDVMNVK-----------GVAADLSHCNTPSQVLDFTGPEELASA  158 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~--~gl~~ev~L~Di~~~~-----------g~~~dL~~~~~~~~v~~i~~t~d~~~a  158 (412)
                      .+|+|.|+||+|++|..++..|+.  .|.  +|+++|.+...           .....+..........+++...+++++
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   86 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL   86 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence            357999999999999999999999  888  99999985420           001111111100011122222334444


Q ss_pred             -cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          159 -LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       159 -l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                       ..++|+||.+||.......+..+.+..|+.....+++.+.+....
T Consensus        87 ~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~  132 (362)
T 3sxp_A           87 EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK  132 (362)
T ss_dssp             TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE
T ss_pred             hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence             689999999998654333455667888999999999999876544

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.84  E-value=3.1e-05  Score=74.31  Aligned_cols=94  Identities=19%  Similarity=0.331  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||+ |.||..++..+...|+  +|+++|.++...  ..+.+..    +.   ..+++++.++++|+||++...+
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~---~~~~~~~~~~~~D~vi~~vp~~   71 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEANV--AAVVAQG----AQ---ACENNQKVAAASDIIFTSLPNA   71 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHHH--HHHHTTT----CE---ECSSHHHHHHHCSEEEECCSSH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----Ce---ecCCHHHHHhCCCEEEEECCCH
Confidence            479999998 9999999999999998  999999976221  1122211    11   1356777889999999994221


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHH---HHHhhC-CCeEEEEEcCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVE---AVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~---~i~~~~-p~aiviv~TNPv  213 (412)
                                     ..++++..   .+.+.. |+.+|+..+|-.
T Consensus        72 ---------------~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           72 ---------------GIVETVMNGPGGVLSACKAGTVIVDMSSVS  101 (301)
T ss_dssp             ---------------HHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred             ---------------HHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence                           12233332   444444 678886666544

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.84  E-value=3.9e-05  Score=74.49  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++||+|||. |.||..+|..|+..|+  +|++||+++....  ++....    ..   ..+++++++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~---~~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGKAA--ALVAAG----AH---LCESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHT----CE---ECSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCC----Ce---ecCCHHHHHhcCCEEEEEe
Confidence            3579999998 9999999999999998  9999999863211  122211    11   2356778899999999995

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.84  E-value=0.00011  Score=70.67  Aligned_cols=116  Identities=15%  Similarity=0.010  Sum_probs=74.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcc---cCCCCc-eeeecCCCcHHhhcCCCcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSH---CNTPSQ-VLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~---~~~~~~-v~~i~~t~d~~~al~~aDiV  165 (412)
                      +.++|.|+||+|++|..++..|+..|.  +|++.|.+....  ....+.+   ...... ..+++...++.++++++|+|
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            347899999999999999999999998  999999875211  1111110   000000 01222233455667899999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |.+|+.... +.+..+.+..|+.....+++.+.+......||++|
T Consensus        88 ih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S  131 (342)
T 1y1p_A           88 AHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             EEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            999986532 23455667889988889998887533223444444

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.84  E-value=3.4e-05  Score=75.50  Aligned_cols=90  Identities=16%  Similarity=0.108  Sum_probs=60.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCch-----hhhhhhhcccCCCCceeeecCCC-cHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNV-----KGVAADLSHCNTPSQVLDFTGPE-ELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~-----~g~~~dL~~~~~~~~v~~i~~t~-d~~~al~~aDiV  165 (412)
                      +|||+|||+ |.||..+|..|+..| .  +|+++|+++.     ......+....    .     .+ ++++++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~-----~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V-----EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C-----EEESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C-----CCCCHHHHHhcCCEE
Confidence            479999998 999999999999999 7  9999999851     11222222211    1     23 556789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      |++...+.         .   .+    .++.+.+.. |+.+|+..|
T Consensus        92 i~avp~~~---------~---~~----~~~~i~~~l~~~~ivv~~s  121 (317)
T 4ezb_A           92 LSLVVGAA---------T---KA----VAASAAPHLSDEAVFIDLN  121 (317)
T ss_dssp             EECCCGGG---------H---HH----HHHHHGGGCCTTCEEEECC
T ss_pred             EEecCCHH---------H---HH----HHHHHHhhcCCCCEEEECC
Confidence            99953221         1   11    235566665 677775554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.83  E-value=2.1e-05  Score=79.50  Aligned_cols=105  Identities=15%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCC------CCeEEEEecCch---hhhhhhhc--ccC---CC-Cce-eeecCCC
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPL------VSALHLYDVMNV---KGVAADLS--HCN---TP-SQV-LDFTGPE  153 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl------~~ev~L~Di~~~---~g~~~dL~--~~~---~~-~~v-~~i~~t~  153 (412)
                      +.++.||+|||| |..|..+|..|+.++.      ..+|.||-.++.   +..+..+.  |..   .| ..+ ..+..++
T Consensus        31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~  109 (391)
T 4fgw_A           31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANP  109 (391)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEES
T ss_pred             cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeC
Confidence            345679999998 9999999999997642      126999987641   11222222  221   11 111 1344578


Q ss_pred             cHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       154 d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      |+++++++||+||++.  |              ...++++++++..+. ++.++|.++-
T Consensus       110 dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~K  152 (391)
T 4fgw_A          110 DLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCLK  152 (391)
T ss_dssp             CHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECCC
T ss_pred             CHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEecc
Confidence            9999999999999984  3              355677888888777 6777766653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.80  E-value=4.9e-05  Score=78.75  Aligned_cols=99  Identities=11%  Similarity=0.098  Sum_probs=66.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiVIiaa  169 (412)
                      .+||+|||+ |.||..+|..|+..|.  +|.++|+++.+..  ++......   ..+..++++++.+++   +|+||++.
T Consensus        15 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~~~--~l~~~~~~---~gi~~~~s~~e~v~~l~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREKTE--EVIAENPG---KKLVPYYTVKEFVESLETPRRILLMV   86 (480)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHH--HHHHHSTT---SCEEECSSHHHHHHTBCSSCEEEECS
T ss_pred             CCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHhhCCC---CCeEEeCCHHHHHhCCCCCCEEEEEC
Confidence            468999998 9999999999999998  9999999862211  12111000   112234677766666   99999995


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      ..+               ..++++++.+..+. |+.+||..+|...
T Consensus        87 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           87 KAG---------------AGTDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             CSS---------------SHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CCH---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            321               12345556677666 6888888888653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.79  E-value=8e-05  Score=76.19  Aligned_cols=109  Identities=15%  Similarity=0.179  Sum_probs=70.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC---Cce----------eeecCCCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP---SQV----------LDFTGPEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~---~~v----------~~i~~t~d~~~al  159 (412)
                      ..|.+|||. |+||..+|..|+..|+  +|+.||+++.+-  ..|.....+   ..+          ..+..|+|    +
T Consensus        11 ~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~kv--~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~   81 (431)
T 3ojo_A           11 GSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQTI--DKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----P   81 (431)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----C
T ss_pred             CCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----h
Confidence            469999998 9999999999999999  999999997321  122221110   000          11233444    4


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc-CCCC
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS-NPVN  214 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T-NPv~  214 (412)
                      ++||+||++.+.|...+...    .-++..+....+.|.++. |+.+|+.-| -|..
T Consensus        82 ~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           82 EASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             CCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             hhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence            68999999999886543100    123566677778888877 677665543 3444

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=97.78  E-value=4.1e-05  Score=74.00  Aligned_cols=116  Identities=19%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccC-CCCceeeecCCCcHHhhcCC--CcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCN-TPSQVLDFTGPEELASALKG--VNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~-~~~~v~~i~~t~d~~~al~~--aDiVI  166 (412)
                      ||||.|+||+|++|..++..|+..|.  +|+++|.+.   ......++.... ......+++...++++++++  +|+||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCF   78 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence            57899999999999999999999998  999999742   111122232211 10001122222334556777  99999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+||.....  ..+..+.+..|+.....+++.+.+....+.||.+|
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999864311  01234556788888999999998877554444444

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.78  E-value=0.00011  Score=72.67  Aligned_cols=114  Identities=18%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..+|||.|+||+|++|..++..|+..|.  +|+++|.+.....  .+..........+++...++.++++++|+||.+++
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            3578999999999999999999999997  9999998752111  01111110001122222345567899999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          171 VPRKP---GMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       171 ~p~k~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      .....   ..+..+.+..|+.....+++.+.+....-+|.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~  143 (379)
T 2c5a_A          103 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA  143 (379)
T ss_dssp             CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            64321   233455677888888999998887654444433

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.77  E-value=8.4e-05  Score=77.11  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc---CCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL---KGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al---~~aDiVIia  168 (412)
                      .+|||+|||. |.||.++|..|+..|+  +|+++|+++.+.  .++....... . .+.++.++++.+   +++|+||++
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~g~~g-~-~i~~~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKG-T-KVVGAQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTT-S-SCEECSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhcccCC-C-ceeccCCHHHHHhhccCCCEEEEe
Confidence            3579999998 9999999999999998  999999987321  1222211100 0 122234565544   469999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ...+               +.++++++.+..+. |+.+||..+|..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           76 VKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             SCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            5322               23445567777776 788887777654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=97.75  E-value=0.00013  Score=70.46  Aligned_cols=116  Identities=14%  Similarity=0.077  Sum_probs=70.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh----hhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK----GVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~----g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      ++||.|+||+|++|++++..|+..|.  +|+..+.+...    ....++... .......+++...++.++++++|+||.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            57899999999999999999999998  89887765411    111122111 100001123333456678899999999


Q ss_pred             cCCCCCCCCCch-hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPGMTR-DDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g~~r-~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|+.......+. .+.+..|+.-...+++.+.+...-..||++|
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            987532111111 2356778888889998887764222344443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.75  E-value=5.4e-05  Score=74.14  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhh----hcccCCCCceeee-cCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAAD----LSHCNTPSQVLDF-TGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~d----L~~~~~~~~v~~i-~~t~d~~~al~~aDiV  165 (412)
                      +|||+|||+ |.||..+|..|+..|.  +|.++|.++.  ......    +....... ...+ ..+++++++++++|+|
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~v   79 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-TAHPDLLTSDIGLAVKDADVI   79 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCE-EECCSEEESCHHHHHTTCSEE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEecccccc-ccccceecCCHHHHHhcCCEE
Confidence            379999998 9999999999999998  9999999752  111111    00110110 0111 1246787778999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII  209 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~  209 (412)
                      |++...+                ...++++.+..+. ++.+|+..
T Consensus        80 i~~v~~~----------------~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           80 LIVVPAI----------------HHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEeCCch----------------HHHHHHHHHHHhCCCCCEEEEc
Confidence            9995322                0145667777766 67766555

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.0001  Score=76.63  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiVIiaa  169 (412)
                      ..||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  ++.....+.  ..+..+.++++.+++   +|+||++.
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~~--~gi~~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKVD--HFLANEAKG--KSIIGATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHHH--HHHHTTTTT--SSEECCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHcccccC--CCeEEeCCHHHHHhcCCCCCEEEEEc
Confidence            468999998 9999999999999998  9999999863211  222100000  112345677766665   99999995


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ..+               ..++++++.+..+. |+.+||..+|..
T Consensus        83 p~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           83 KAG---------------APVDALINQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             CSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             CCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            322               23455667777776 678887777754

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.74  E-value=4.3e-05  Score=73.76  Aligned_cols=120  Identities=16%  Similarity=0.001  Sum_probs=72.0

Q ss_pred             CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcc-cCCCCceeeecCCCcHHhhcCC--C
Q 015172           89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSH-CNTPSQVLDFTGPEELASALKG--V  162 (412)
Q Consensus        89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~-~~~~~~v~~i~~t~d~~~al~~--a  162 (412)
                      ++.+++||.|+||+|++|..++..|+..|.  +|+++|.+...   ....++.. ........+++...++.+.+++  .
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCC
Confidence            346689999999999999999999999997  99999987521   11111210 0000000122111234445664  5


Q ss_pred             cEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+||.+||.....  ..+..+.+..|+.....+++.+.+......||.+|
T Consensus        88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999999865321  12345567788888888999888775323444443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.73  E-value=0.0001  Score=76.22  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc---CCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL---KGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al---~~aDiVIiaag  170 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|++..+..  ++.....+.  ..+..++++++.+   +++|+||++..
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~g--~gi~~~~~~~e~v~~l~~aDvVilaVp   75 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKG--TKVLGAHSLEEMVSKLKKPRRIILLVK   75 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTT--SSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHhccccC--CCeEEeCCHHHHHhhccCCCEEEEeCC
Confidence            78999998 9999999999999998  8999999862211  121100000  0122345676654   59999999953


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                      .+               ..++++++.+..+. |+.+||..+|...
T Consensus        76 ~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           76 AG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             TT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             Ch---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            22               12344555666666 6778877777653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.73  E-value=1.9e-05  Score=72.83  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..+|||+|||+ |.||..++..+...|.  +|+++|.+....  .++.+..    +. .  + +++++++++|+||++..
T Consensus        26 ~~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~~--~~~~~~g----~~-~--~-~~~~~~~~~DvVi~av~   92 (215)
T 2vns_A           26 DEAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKRT--ARLFPSA----AQ-V--T-FQEEAVSSPEVIFVAVF   92 (215)
T ss_dssp             ---CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHHH--HHHSBTT----SE-E--E-EHHHHTTSCSEEEECSC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHcC----Cc-e--e-cHHHHHhCCCEEEECCC
Confidence            34689999997 9999999999999998  899999975221  1222211    21 1  1 56678999999999964


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      ..    . ..+           +.+ +....++.+++.++|...
T Consensus        93 ~~----~-~~~-----------v~~-l~~~~~~~~vv~~s~g~~  119 (215)
T 2vns_A           93 RE----H-YSS-----------LCS-LSDQLAGKILVDVSNPTE  119 (215)
T ss_dssp             GG----G-SGG-----------GGG-GHHHHTTCEEEECCCCCH
T ss_pred             hH----H-HHH-----------HHH-HHHhcCCCEEEEeCCCcc
Confidence            11    1 111           111 222337889988888875

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=97.72  E-value=0.00016  Score=69.15  Aligned_cols=108  Identities=18%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |+||.|+||+|++|..++..|+..|.  .+++.+.+.....   ...........+++. .++.++++++|+||.+|+.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~---~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~   74 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEE---FVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANP   74 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGG---GSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChh---hcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCC
Confidence            56899999999999999999998883  4444333321111   011100000112232 45567889999999999865


Q ss_pred             CC--CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RK--PGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ..  ...+..+.+..|+.....+++.+.+....-+|
T Consensus        75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv  110 (313)
T 3ehe_A           75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIV  110 (313)
T ss_dssp             CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            32  12344566778999999999998877644444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.72  E-value=2.6e-05  Score=75.09  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC-----C-CCCeEEEEecCchhhhhhhhcc-cC----C-CCc--eeeecCCCcHHh
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS-----P-LVSALHLYDVMNVKGVAADLSH-CN----T-PSQ--VLDFTGPEELAS  157 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~-----g-l~~ev~L~Di~~~~g~~~dL~~-~~----~-~~~--v~~i~~t~d~~~  157 (412)
                      .+|||+|||+ |.||..+|..|+..     | .  +|.++|. ..  ....+.+ ..    . ...  ...+..+++.+ 
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~--~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-   79 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-GA--HLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-   79 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HH--HHHHHHHHTSEEEECSSCEEEECCSEEESCHH-
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-HH--HHHHHHhcCCeEEEeCCCCeEEecceEecCcc-
Confidence            3489999998 99999999999988     8 7  9999998 41  1112221 11    0 000  00011124444 


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      .++++|+||++...+.                ..++++.+..+. |+.+|+..+|..+    . .+.+.+.  ++..+++
T Consensus        80 ~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~----~-~~~l~~~--l~~~~v~  136 (317)
T 2qyt_A           80 EVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGAD----I-AERMRTY--LPDTVVW  136 (317)
T ss_dssp             HHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSS----H-HHHHTTT--SCTTTBC
T ss_pred             ccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCC----c-HHHHHHH--CCCCcEE
Confidence            6799999999953321                244556666655 6788877788876    2 3444444  5555554


Q ss_pred             -eccccc
Q 015172          237 -GVTTLD  242 (412)
Q Consensus       237 -Glt~Ld  242 (412)
                       |++..+
T Consensus       137 ~g~~~~~  143 (317)
T 2qyt_A          137 KGCVYIS  143 (317)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence             445544

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.72  E-value=4.3e-05  Score=74.48  Aligned_cols=93  Identities=11%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+|||+|||+ |.||..+|..|+..|. .+|+++|++. .. ....+....    ..   .++++++++++||+||++..
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~-~~~~~~~~g----~~---~~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAES-WRPRAEELG----VS---CKASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHH-HHHHHHHTT----CE---ECSCHHHHHHHCSEEEECSC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHH-HHHHHHHCC----CE---EeCCHHHHHhcCCEEEEecC
Confidence            3689999998 9999999999998885 5899999962 11 111122211    11   23567778999999999964


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .+.         .   .    ++++.+.+.. |+.+|+..|
T Consensus        93 ~~~---------~---~----~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           93 AQA---------A---L----EVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             TTT---------H---H----HHHHHHGGGCCTTCEEEECC
T ss_pred             chh---------H---H----HHHHhhHhhcCCCCEEEEcC
Confidence            321         1   1    1345666666 677775443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.70  E-value=4.5e-05  Score=62.00  Aligned_cols=74  Identities=28%  Similarity=0.382  Sum_probs=49.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++||.|+|+ |.+|..++..|...| .  +|+++|.++.+...  +.+........++....++.+.++++|+||.+++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALAV--LNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP   78 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHHH--HHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHH--HHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence            3579999999 999999999999998 5  89999998632111  1111111111112222345567899999999974

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.70  E-value=5.8e-05  Score=73.20  Aligned_cols=114  Identities=18%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCch---hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNV---KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      ||+|.|+||+|++|..++..|+..  |.  +|+++|.+..   .....++.+........+++...++.++++++|+||.
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVH   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEE
Confidence            579999999999999999999987  66  9999998641   1111122111100001122222345567899999999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||.....  ..+..+.+..|+.....+++.+.+...  .||.+|
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            99865311  012344567788888888888887643  444443

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.69  E-value=0.00011  Score=75.83  Aligned_cols=97  Identities=10%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiVIiaag  170 (412)
                      +||+|||+ |.||..+|..++..|.  +|.++|++..+..  ++.......   .+..++++++.+++   +|+||++..
T Consensus         6 ~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp   77 (474)
T 2iz1_A            6 ANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSKTE--EVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQ   77 (474)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHH--HHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCC
T ss_pred             CcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEcc
Confidence            68999998 9999999999999998  8999999762211  111110001   12234567766555   999999953


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      .+               ..+.++++++.... |+.+||..+|..
T Consensus        78 ~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           78 AG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             TT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             Cc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            21               22345556677666 677887777764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.69  E-value=0.0001  Score=65.58  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|.+.....  ++.+........+++...++.++++++|+||.++|...
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~   79 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN   79 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhcc--cccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCC
Confidence            6899999999999999999999997  9999998752111  11111110001122222345567899999999998653


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....     ...|......+++.+.+....-++
T Consensus        80 ~~~~-----~~~n~~~~~~~~~~~~~~~~~~~v  107 (206)
T 1hdo_A           80 DLSP-----TTVMSEGARNIVAAMKAHGVDKVV  107 (206)
T ss_dssp             CCSC-----CCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCc-----cchHHHHHHHHHHHHHHhCCCeEE
Confidence            2111     135677777888888776543333

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.68  E-value=5.6e-05  Score=73.22  Aligned_cols=94  Identities=14%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||+|||+ |.||..++..++..|.  +|.++|.++....  .+....    .. .  +.+++++++++|+||++...+
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~-~--~~~~~~~~~~~DvVi~av~~~   97 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----AR-L--GRTPAEVVSTCDITFACVSDP   97 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CE-E--CSCHHHHHHHCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CE-E--cCCHHHHHhcCCEEEEeCCCH
Confidence            479999998 9999999999999998  8999999863211  122211    11 1  345667789999999995321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHH---hh-CCCeEEEEEcCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVA---DN-CPDAFIHIISNPV  213 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~---~~-~p~aiviv~TNPv  213 (412)
                                     ..++++...+.   +. .|+.+|+..+|..
T Consensus        98 ---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A           98 ---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             ---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred             ---------------HHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence                           22344444332   33 3788887788743

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.68  E-value=9.5e-05  Score=71.46  Aligned_cols=116  Identities=14%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcc---cCCCCceeeecCCCcHHhhcC--CCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH---CNTPSQVLDFTGPEELASALK--GVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~---~~~~~~v~~i~~t~d~~~al~--~aDiV  165 (412)
                      .|+|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++..   ........+++...+++++++  ++|+|
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            47899999999999999999999998  999999865  1111112211   111100112222234445555  89999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |.+||.....  .....+.+..|+.....+++.+.+....-+|.+-|
T Consensus        83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            9999865311  11234557789998999999888765544554433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.68  E-value=0.0001  Score=76.29  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIia  168 (412)
                      |||+|||+ |.||..+|..|+..|.  +|.++|++..+  ....+..  ..+.. ..+..++++++.++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g--~~~~~-~~i~~~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANA--SAPFA-GNLKAFETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTT--TSTTG-GGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcC--CCCCC-CCeEEECCHHHHHhcccCCCEEEEe
Confidence            78999998 9999999999999998  89999997621  1111111  00000 11223466766555   59999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ...+               ..++++++.+..+. |+.+||..+|..
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           76 VQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             CCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             cCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            5322               12344556666666 678887777765

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.68  E-value=0.00016  Score=75.03  Aligned_cols=104  Identities=20%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +|||.|+||+|++|..++..|+..|.  +|+.++.+......   ...       ++  .....++++++|+||.+|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~---v~~-------d~--~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGK---RFW-------DP--LNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTC---EEC-------CT--TSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccc---eee-------cc--cchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999998  99999987522100   000       11  112235789999999999865


Q ss_pred             CCC---CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          173 RKP---GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       173 ~k~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...   .....+++..|+.....+++.+.+...-..||.+|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            321   22345566779998999999855444222343343

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.67  E-value=9.6e-05  Score=73.34  Aligned_cols=89  Identities=20%  Similarity=0.252  Sum_probs=60.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcC----CCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALK----GVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~----~aDiVIi  167 (412)
                      .+||+|||+ |.||..+|..|...|.  +|+++|.++. ...+.++   .    +.   .+++++++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G----~~---~~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---G----FD---VSADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---T----CC---EESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---C----Ce---eeCCHHHHHHhcccCCCEEEE
Confidence            478999998 9999999999999997  9999999862 2222211   1    11   1245555554    5799999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +..                ...+.++.+++..+.|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            942                234455566666666788775543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.67  E-value=0.00027  Score=62.79  Aligned_cols=139  Identities=15%  Similarity=0.077  Sum_probs=77.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh--cCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA--LKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a--l~~aDiVIiaa  169 (412)
                      .+||.|+|+ |.||..++..|... |.  +|+++|.++.+..  .+..........+.+....+.++  +.++|+||++.
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~--~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAAQ--QHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHHH--HHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHHH--HHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            468999998 99999999999988 98  9999999863211  12221111101111100113333  78999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHH
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTF  249 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~  249 (412)
                      +.+           ..|.    .++..+++..|+..++..+|..+     ..+.+.+.+   .+.++.-...-..++-..
T Consensus       114 ~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~-----~~~~l~~~G---~~~vi~p~~~~a~~l~~~  170 (183)
T 3c85_A          114 PHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPD-----QLEGLLESG---VDAAFNIYSEAGSGFARH  170 (183)
T ss_dssp             SSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHH-----HHHHHHHHT---CSEEEEHHHHHHHHHHHH
T ss_pred             CCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHcC---CCEEEchHHHHHHHHHHH
Confidence            311           2233    33445566677776665554332     234455542   344554433223344445


Q ss_pred             HHHHcCCCCC
Q 015172          250 VAQKKNLKLI  259 (412)
Q Consensus       250 la~~l~v~~~  259 (412)
                      +-+.++.+..
T Consensus       171 ~~~~~~~~~~  180 (183)
T 3c85_A          171 VCKQLEPQFT  180 (183)
T ss_dssp             HHHHHCCCCC
T ss_pred             HHHhcCCccc
Confidence            5555555443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.66  E-value=6.5e-05  Score=70.82  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      +++|.|+||+|++|..++..|+..|.  +|++.|+++....     .........+++...++.+.++++|+||..||..
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~   75 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA-----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS   75 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC-----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc-----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc
Confidence            45799999999999999999999997  9999999862211     0000000112222234556788999999999874


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .  .....+.+..|+.-...+++.+.+....-+|.+-|
T Consensus        76 ~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  111 (267)
T 3rft_A           76 V--EKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS  111 (267)
T ss_dssp             S--CCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             C--cCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            2  22345567789988899999988765444444433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.65  E-value=0.00011  Score=71.40  Aligned_cols=120  Identities=11%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhh-hcccCCCC-ceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAAD-LSHCNTPS-QVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~d-L~~~~~~~-~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +|||+|||+ |.||..++..|+ .|.  +|.++|.++.  .....+ +.-..... ....+.  .+ .+...++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~--~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCS--AD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCE--EE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHHHHHhCCceEecCCCeeccccc--cc-ccccCCCCEEEEE
Confidence            479999998 999999999999 887  9999999752  111110 10000000 011111  11 1357899999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccch
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDV  243 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds  243 (412)
                      .-.                .-+.++++.+....++. |+.+.|-.+    . .+.+.+.  +|.++|++- +....
T Consensus        75 vK~----------------~~~~~~l~~l~~~~~~~-ivs~~nGi~----~-~e~l~~~--~~~~~vl~g~~~~~a  126 (307)
T 3ego_A           75 VKQ----------------HQLQSVFSSLERIGKTN-ILFLQNGMG----H-IHDLKDW--HVGHSIYVGIVEHGA  126 (307)
T ss_dssp             CCG----------------GGHHHHHHHTTSSCCCE-EEECCSSSH----H-HHHHHTC--CCSCEEEEEEECCEE
T ss_pred             eCH----------------HHHHHHHHHhhcCCCCe-EEEecCCcc----H-HHHHHHh--CCCCcEEEEEEeece
Confidence            421                11345556666555677 777788887    2 3455555  678888754 55443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=97.65  E-value=0.0003  Score=68.69  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC-----CCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK-----GVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-----~aDiVI  166 (412)
                      .|+|.|+||+|++|..++..|+..| .  +|+++|.+........+....   ...++.....+++.++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLN---IADYMDKEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSC---CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCce---EeeecCcHHHHHHHHhhcccCCCCEEE
Confidence            4789999999999999999999998 6  899999865221111221111   1112221223444455     599999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      .+||.......+..+.+..|+.....+++.+.+...
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~  156 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI  156 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999875433344556678899999999998887655

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.65  E-value=0.00021  Score=67.54  Aligned_cols=103  Identities=20%  Similarity=0.189  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||.|+||+|++|..++..|... |.  +|++++.+....  .++..........++....++.++++++|+||.+++..
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            68999999999999999998887 77  899999876321  11222111111112222245667899999999998754


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      ..        ...|+...+.+++.+.+....-+|.+
T Consensus        77 ~~--------~~~~~~~~~~l~~aa~~~gv~~iv~~  104 (289)
T 3e48_A           77 HP--------SFKRIPEVENLVYAAKQSGVAHIIFI  104 (289)
T ss_dssp             CS--------HHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cc--------chhhHHHHHHHHHHHHHcCCCEEEEE
Confidence            21        24467777888888887664444433

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.64  E-value=0.00028  Score=68.19  Aligned_cols=116  Identities=16%  Similarity=0.045  Sum_probs=72.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccC-----CCCceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCN-----TPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~-----~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      +++|.|+||+|++|++++..|+..|.  +|+..+.+.. .....++.+..     ......+++...++.++++++|+||
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            46899999999999999999999998  8988877642 11111111100     0000112333345667889999999


Q ss_pred             EcCCCCCCCCCch-hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRKPGMTR-DDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k~g~~r-~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+|+.......+. .+.+..|+.-...+++.+.+...-..||++|
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            9987542111222 2467789888899999888765223444443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.63  E-value=5.5e-05  Score=71.12  Aligned_cols=66  Identities=12%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +|||+|||+ |.||..++..+...|.  +|.++|.++....  ++.+. ..  +.   .++++++.++++|+||++.
T Consensus         3 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~-~g--~~---~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            3 AMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSK--EIAEQ-LA--LP---YAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHH--HHHHH-HT--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHH-cC--CE---eeCCHHHHHhcCCEEEEEe
Confidence            589999998 9999999999988886  9999999862211  11111 00  11   2356777889999999995

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.63  E-value=0.00011  Score=67.47  Aligned_cols=110  Identities=23%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      ++|.|+||+|++|..++..|+..|...+|+++|.+......  +..........+++...+++++++++|+||.++|...
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~~   96 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE--EAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTR   96 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS--GGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc--cccCCceEEecCcCCHHHHHHHhcCCCEEEECCCccc
Confidence            68999999999999999999998865689999987521100  0000110001123223456667889999999998642


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      . +....+.+..|+.....+++.+.+....-+|
T Consensus        97 ~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv  128 (242)
T 2bka_A           97 G-KAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  128 (242)
T ss_dssp             H-HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             c-cCCcccceeeeHHHHHHHHHHHHHCCCCEEE
Confidence            1 1123345667777788888887765544444

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=97.62  E-value=0.00019  Score=69.18  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~aDiVIia  168 (412)
                      .|||.|+||+|++|..++..|+..|...+|+..|..........+.+......+.    +++...++++++.++|+||.+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            3789999999999999999998876212899999864111111111110011121    222122344566899999999


Q ss_pred             CCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ||.....  ..+..+.+..|+.....+++.+.+......||.+|
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS  126 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9864311  11234567788988899999988875334454444

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.62  E-value=0.00031  Score=64.37  Aligned_cols=110  Identities=16%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+++|.|+||+|++|..++..|+..  |.  +|++++.+....  .++ .........+++-..++++.++++|+||.++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~~--~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a   77 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQGK--EKI-GGEADVFIGDITDADSINPAFQGIDALVILT   77 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHHH--HHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCch--hhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence            3578999999999999999999998  66  999999875221  112 1111111112222235666789999999999


Q ss_pred             CCCCC------------CCCc---hhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRK------------PGMT---RDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k------------~g~~---r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      |....            +...   -.+.+..|+.....+++.+.+....-+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv  129 (253)
T 1xq6_A           78 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  129 (253)
T ss_dssp             CCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             cccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEE
Confidence            86431            1110   0124567888888888888876544344

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.61  E-value=0.00014  Score=61.07  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh-cCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA-LKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a-l~~aDiVIiaag~  171 (412)
                      ++||.|+|+ |.+|..++..|...|.  +|+++|.++...  ..+..........+.+....+.++ +.++|+||++.+.
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEKV--NAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHHH--HTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence            457999998 9999999999999997  899999975221  112111110000011101122222 6789999999764


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +          ...|..    +...+++..|+-++...+|+..
T Consensus        81 ~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           81 N----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             C----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             c----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            3          123332    3334445567655544455543

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.60  E-value=0.00016  Score=70.11  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcCC--CcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALKG--VNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~--aDiV  165 (412)
                      .+|||.|+||+|++|..++..|+..|..-+|+..|..........+........+.    ++....++.+++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            35899999999999999999999988322888888764211112222211111122    22222334556666  9999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          166 VIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       166 Iiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      |.+|+.....  ..+..+.+..|+.....+++.+.+....-+|.+
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~  147 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQV  147 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEE
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999865321  123455678888888999999888754434433

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.60  E-value=0.00014  Score=69.57  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||+ |.||..++..++..|.  +|+++|+++....  .+....    +.   .++++++.++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~---~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDACK--EFQDAG----EQ---VVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHTTT----CE---ECSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999998  8999999863211  122211    11   2356777789999999994

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.59  E-value=0.00019  Score=69.53  Aligned_cols=110  Identities=16%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hh-hhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KG-VAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIi  167 (412)
                      ..|+|.|+||+|++|..++..|+..|.  +|+++|.+.. .. ...++.  .......+++-..++.++++  ++|+||.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~l~--~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKREVLPPVA--GLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCGGGSCSCT--TEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccchhhhhccC--CceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            357999999999999999999999997  9999998641 11 111110  00000112221223455677  9999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +||..........+ +..|+.....+++.+.+....-+|
T Consensus        95 ~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV  132 (330)
T 2pzm_A           95 SAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVKRLL  132 (330)
T ss_dssp             CCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCSEEE
T ss_pred             CCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCCEEE
Confidence            99865432122223 677888888888888876533344

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.58  E-value=8.8e-05  Score=71.48  Aligned_cols=116  Identities=16%  Similarity=0.009  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcCC--CcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALKG--VNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~--aDiVI  166 (412)
                      .|+|.|+||+|++|..++..|+..|.  +|+++|.+........+.+......+.    +++...++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            36899999999999999999999998  999999875211111111110000111    22111234445554  59999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+||.....  ..+..+.+..|+.....+++.+.+......||.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999865311  12344556778888888888888765324444443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.58  E-value=0.00033  Score=58.53  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .|||.|+|+ |.+|..++..|...|.  +|+++|.++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            379999998 9999999999999997  999999976

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.57  E-value=0.00012  Score=70.52  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag  170 (412)
                      ||||.|+||+|++|..++..|+..|.  +|+++|.+..... ..+.. .......++....++.++++  ++|+||.+|+
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~   76 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-GAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA   76 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-TSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-CcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence            57999999999999999999999997  9999998642110 11211 10000112211123445566  8999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .....  ..+..+.+..|+.....+++.+.+....-+|
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  114 (330)
T 2c20_A           77 DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI  114 (330)
T ss_dssp             CCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEE
Confidence            65311  1123455677888888898888775433333

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.56  E-value=8.3e-05  Score=66.86  Aligned_cols=106  Identities=11%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .|||.|+||+|++|..++..|+..|...+|+++|.+...      .+........+++...++.+++  +|+||.++|..
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            468999999999999999999999865589999987532      0100000001111112233333  89999999865


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .....+..+....|+.....+++.+.+....-++
T Consensus        77 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  110 (215)
T 2a35_A           77 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  110 (215)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             cccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEE
Confidence            4322345566778888888899888876544333

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.56  E-value=0.00038  Score=66.20  Aligned_cols=99  Identities=18%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|+.++..|..+|+  +|+.+..++..+.            +..  ...+. ++++++|.||..++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~~------------~~~--~~~~~-~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPGR------------ITW--DELAA-SGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTE------------EEH--HHHHH-HCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcCe------------eec--chhhH-hhccCCCEEEEeccCcc
Confidence            8999999999999999999999999  9999877542111            110  01122 47899999999987542


Q ss_pred             CC-----CC-chhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE
Q 015172          174 KP-----GM-TRDDLFNINANIVKTLVEAVADNC-PDAFIHII  209 (412)
Q Consensus       174 k~-----g~-~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~  209 (412)
                      ..     .. ...+....|+...+.+.+.+++.. +..+++.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            11     11 223455677888888888877665 44444443

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.55  E-value=0.00018  Score=69.81  Aligned_cols=112  Identities=19%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHHhhcCC--CcEEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELASALKG--VNVVVI  167 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIi  167 (412)
                      -.+|||.|+||+|++|..++..|+..|.  +|+++|.+.... ...+.+. .......+++-..++.+++++  +|+||.
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEE
Confidence            3468999999999999999999999997  999999864210 0111110 000000122111234456677  999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +||..........+ +..|+.....+++.+.+....-+|
T Consensus        96 ~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV  133 (333)
T 2q1w_A           96 TAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVGRFV  133 (333)
T ss_dssp             CCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCCEEE
Confidence            99865432112222 677888888888888775433344

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.55  E-value=0.00056  Score=57.92  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+|+ |.+|..++..|...|.  +|+++|.++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            568999998 9999999999999998  999999986

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.54  E-value=0.00017  Score=70.31  Aligned_cols=112  Identities=17%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcc-------cCCCCceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSH-------CNTPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~-------~~~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +|||.|+||+|++|..++..|+..|.  +|+++|.+..  .....++..       ........++....++.++++++|
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  104 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD  104 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence            57999999999999999999999998  9999998641  111111110       110000112221234556788999


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          164 VVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       164 iVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +||.+||....+.  .+..+.+..|+.....+++.+.+....-+|
T Consensus       105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  149 (352)
T 1sb8_A          105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFT  149 (352)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            9999998643110  123445677888888888888876444344

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.54  E-value=5.1e-05  Score=74.54  Aligned_cols=113  Identities=18%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhcc-cCCCCceeeec-CCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFT-GPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~-~t~d~~~al~~aDiVIia  168 (412)
                      .+|||.|+||+|++|+.++..|+.. |.  +|+.+|.+....  .++.. ........+++ ...++.++++++|+||.+
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~   98 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPL   98 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEc
Confidence            4679999999999999999999987 87  999999875211  11111 11001011222 123345577899999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+......  .+..+.+..|+.....+++.+.+..  ..||.+|
T Consensus        99 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~S  140 (372)
T 3slg_A           99 VAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPS  140 (372)
T ss_dssp             BCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEEC
T ss_pred             CccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeC
Confidence            88653211  1234456677777788888888776  3444444

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.52  E-value=0.0002  Score=69.63  Aligned_cols=94  Identities=18%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |+||++||- |.||.++|..|+..|+  +|+.||++..+  +.++....  .  .   ...+++++.++||+||.+.   
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~~--~~~l~~~G--a--~---~a~s~~e~~~~~dvv~~~l---   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAG--A--S---AARSARDAVQGADVVISML---   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTT--C--E---ECSSHHHHHTTCSEEEECC---
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHHH--HHHHHHcC--C--E---EcCCHHHHHhcCCceeecC---
Confidence            679999998 9999999999999999  99999998632  22333322  1  1   1246778899999999983   


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHH---HHhhC-CCeEEEEEcCCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEA---VADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~---i~~~~-p~aiviv~TNPv~  214 (412)
                                  -|-+.++++...   +.+.. |+.++|..| +++
T Consensus        68 ------------~~~~~v~~V~~~~~g~~~~~~~g~iiId~s-T~~  100 (300)
T 3obb_A           68 ------------PASQHVEGLYLDDDGLLAHIAPGTLVLECS-TIA  100 (300)
T ss_dssp             ------------SCHHHHHHHHHSSSSSTTSCCC-CEEEECS-CCC
T ss_pred             ------------CchHHHHHHHhchhhhhhcCCCCCEEEECC-CCC
Confidence                        234566666654   33333 566665544 344

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=97.52  E-value=0.00057  Score=64.80  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC-----CcEEEEc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG-----VNVVVIP  168 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~-----aDiVIia  168 (412)
                      ||.|+||+|++|..++..|+..| .  +|+++|.........++.....   ..++.....+++.+++     +|+||.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNI---ADYMDKEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCC---SEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCccee---ccccccHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999998 6  8999998652111111211111   1122222234445654     9999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      ++.......+..+.+..|+.....+++.+.+...
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  109 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI  109 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9865433344556678899989999998887655

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.51  E-value=0.00014  Score=71.86  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|||+ |.||..+|..+...|.  +|+++|.+..  ...+.+   ..    +. .  + ++++++++||+||++..
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~---~G----~~-~--~-~~~e~~~~aDvVilavp   81 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEA---HG----LK-V--A-DVKTAVAAADVVMILTP   81 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHH---TT----CE-E--E-CHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHH---CC----CE-E--c-cHHHHHhcCCEEEEeCC
Confidence            478999998 9999999999999997  8999998752  222211   11    11 1  2 56678899999999942


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHH-HHHhhC-CCeEEEE
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVE-AVADNC-PDAFIHI  208 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~-~i~~~~-p~aiviv  208 (412)
                                      .....++++ ++..+. |+++|+.
T Consensus        82 ----------------~~~~~~v~~~~i~~~l~~~~ivi~  105 (338)
T 1np3_A           82 ----------------DEFQGRLYKEEIEPNLKKGATLAF  105 (338)
T ss_dssp             ----------------HHHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             ----------------cHHHHHHHHHHHHhhCCCCCEEEE
Confidence                            122256666 777776 6777753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.50  E-value=0.00013  Score=68.59  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=45.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||+ |.||..++..|+..|+  +|+++|.........++....    +.     +++++.++++|+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            68999998 9999999999999998  999998731111122222211    11     34556789999999995

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.49  E-value=0.00039  Score=70.65  Aligned_cols=141  Identities=18%  Similarity=0.132  Sum_probs=80.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh-hcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS-ALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~-al~~aDiVIiaag~  171 (412)
                      .++|.|+|. |.+|..++..|...|+  +|+++|.++..  +..+..........+.+-..-+.+ .+.+||+||++.+ 
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~-   77 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID-   77 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS-
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC-
Confidence            468999998 9999999999999998  99999998722  111222222111111110111222 3789999999943 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~l  250 (412)
                                    |-..-..++..+++..|+..+++-+ |+..      .+.+.+.+   -+.||--+..-+.++-..+
T Consensus        78 --------------~~~~n~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~G---ad~Vi~~~~~~a~~la~~~  134 (413)
T 3l9w_A           78 --------------DPQTNLQLTEMVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKTGRLA  134 (413)
T ss_dssp             --------------SHHHHHHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHTT---CSSCEETTHHHHHHHHHHH
T ss_pred             --------------ChHHHHHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEECccHHHHHHHHHHH
Confidence                          1233344566667778986554444 4443      33344442   3455544333334444444


Q ss_pred             HHHcCCCCCCee
Q 015172          251 AQKKNLKLIDVD  262 (412)
Q Consensus       251 a~~l~v~~~~V~  262 (412)
                      -..+|+++..++
T Consensus       135 L~~lg~~~~~~~  146 (413)
T 3l9w_A          135 LESLGLGPYEAR  146 (413)
T ss_dssp             HHHTTCCHHHHH
T ss_pred             HHHcCCCHHHHH
Confidence            455666665543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.48  E-value=0.00022  Score=69.95  Aligned_cols=113  Identities=17%  Similarity=0.219  Sum_probs=73.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|.|+||+|++|..++..|+.. |. .+|+++|.++..  ....++..........+++...++.++++++|+||.+|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~A   99 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAA   99 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECC
Confidence            478999999999999999999987 73 389999997622  11222221111000112222234556789999999999


Q ss_pred             CCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      |....+.  .+..+.+..|+.....+++.+.+....-+|
T Consensus       100 a~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V  138 (344)
T 2gn4_A          100 ALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVI  138 (344)
T ss_dssp             CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            8764221  123456778888888999888876544444

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=97.46  E-value=0.00024  Score=68.53  Aligned_cols=111  Identities=20%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC---C---CCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS---P---LVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~---g---l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~aD  163 (412)
                      |||.|+||+|++|..++..|+..   |   .  +|+++|.+...+....+........+.    +++-..++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            68999999999999999999986   6   5  999999854111111111110011111    2221234556778999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          164 VVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       164 iVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +||.+||.....  ..+..+.+..|+.....+++.+.+....-+|
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v  123 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV  123 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            999998864311  0123345678888888899888876543343

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.46  E-value=0.00021  Score=68.39  Aligned_cols=111  Identities=18%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC--CcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG--VNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~--aDiVIiaa  169 (412)
                      +.++|.|+||+|++|..++..|+..|.  +|+++|.+... .  .+   .......+++...++.+++++  +|+||.+|
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~--~l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   82 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-K--LP---NVEMISLDIMDSQRVKKVISDIKPDYIFHLA   82 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-C--CT---TEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-c--cc---eeeEEECCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            468999999999999999999999998  99999987532 1  11   100000122111234445655  89999999


Q ss_pred             CCCCC--CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          170 GVPRK--PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       170 g~p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |....  ...+..+.+..|+.....+++.+.+......||.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           83 AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             SCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             cccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            86531  112345567788888899999886653334444443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.45  E-value=0.00017  Score=70.00  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .||++||- |.||.++|..|+..|+  +|+.||+++.+.  .++....    ..   ...++++++++||+||.+.
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G----~~---~~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASKA--EPLTKLG----AT---VVENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CE---ECSSGGGGCCTTCEEEECC
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcC----Ce---EeCCHHHHHhcCCceeeec
Confidence            48999998 9999999999999999  999999986321  2232221    11   1245677899999999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.45  E-value=0.00047  Score=59.74  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhc-ccCCCCceeeecC-CCc---HHhh-cCCCcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLS-HCNTPSQVLDFTG-PEE---LASA-LKGVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~-~~~~~~~v~~i~~-t~d---~~~a-l~~aDiV  165 (412)
                      ..++|.|+|+ |.+|..++..|...|.  +|+++|.++...  ..+. ....    ..+.+ .++   +.++ ++++|+|
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~g~----~~~~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEFSG----FTVVGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTCCS----EEEESCTTSHHHHHTTTGGGCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcCCC----cEEEecCCCHHHHHHcCcccCCEE
Confidence            3579999998 9999999999999998  999999986321  1122 1111    11111 112   2222 6789999


Q ss_pred             EEcCC
Q 015172          166 VIPAG  170 (412)
Q Consensus       166 Iiaag  170 (412)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99964

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.45  E-value=9.3e-05  Score=63.45  Aligned_cols=92  Identities=14%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|||+ |.||..++..+...|.  +|+++|++..+  ..+.++.     ...   ....++.+.++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~---~~~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEY---VLINDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEE---EECSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----Cce---EeecCHHHHhcCCCEEEEeCC
Confidence            469999998 9999999998888886  69999998632  2222221     111   123567778899999999976


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .+. +-..                  .+...|+.+++.+++|.+
T Consensus        90 ~~~-~~~~------------------~~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           90 SKT-PIVE------------------ERSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             CSS-CSBC------------------GGGCCTTCEEEECCSSCS
T ss_pred             CCC-cEee------------------HHHcCCCCEEEEccCCcc
Confidence            552 1110                  011235888888899987

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.44  E-value=0.00019  Score=70.87  Aligned_cols=103  Identities=19%  Similarity=0.076  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~aDiVI  166 (412)
                      ++|||.|+||+|++|..++..|+..| .  +|+++|.+..... ..+..   ...+.    +++...++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            35799999999999999999999998 7  9999998652111 11110   01111    2211224556788999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .+|+.....  ..+..+.+..|+.....+++.+.+.
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~  140 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF  140 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTC
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            998864311  0123455677888888888888775

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.44  E-value=0.00014  Score=68.84  Aligned_cols=100  Identities=23%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIi  167 (412)
                      +...+||.|+||+|++|..++..|+..|.  +|+.+|.+.     .|+.+            ..+++++++  ++|+||.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEE
Confidence            45678999999999999999999999997  999998752     12211            123444566  7999999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||.....  ..+..+.+..|+.....+++.+.+...  .||.+|
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            99864311  123345567788888888888887654  444443

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.43  E-value=0.001  Score=64.38  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=71.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .++|||.|+||+|++|..++..|+..|.  +|+++|.+..  .....++..   ...+..+.+.. ...++.++|+||.+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~-~~~~~~~~d~vih~   98 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HENFELINHDV-VEPLYIEVDQIYHL   98 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTTEEEEECCT-TSCCCCCCSEEEEC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCceEEEeCcc-CChhhcCCCEEEEC
Confidence            4468999999999999999999999998  9999998641  111111111   11122222211 11257899999999


Q ss_pred             CCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+.....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        99 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            8864311  123345567888888889988887653  444444

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.42  E-value=0.00021  Score=70.76  Aligned_cols=118  Identities=17%  Similarity=0.089  Sum_probs=71.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh------------------hhhhh---cccCCCCceeee
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG------------------VAADL---SHCNTPSQVLDF  149 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g------------------~~~dL---~~~~~~~~v~~i  149 (412)
                      ..+++|.|+||+|++|..++..|+..|.  +|+++|......                  ...++   ..........++
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl   86 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI   86 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence            3468999999999999999999999998  999999753110                  01111   111110001122


Q ss_pred             cCCCcHHhhcCC--CcEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          150 TGPEELASALKG--VNVVVIPAGVPRKP--GMTR---DDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       150 ~~t~d~~~al~~--aDiVIiaag~p~k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +...++.+++++  +|+||.+||....+  ..+.   ...+..|+.....+++.+.+......||.+|
T Consensus        87 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~S  154 (404)
T 1i24_A           87 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  154 (404)
T ss_dssp             TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            212234455666  99999999864311  1111   1245678888899999988776433444444

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.42  E-value=0.00014  Score=68.22  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ++||.|+||+|++|..++..|+..|.  +|+++|.+....    +.. .......+++...++.+.++++|+||.++|..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~~-~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   74 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AEA-HEEIVACDLADAQAVHDLVKDCDGIIHLGGVS   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CCT-TEEECCCCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cCC-CccEEEccCCCHHHHHHHHcCCCEEEECCcCC
Confidence            35899999999999999999999987  999999875211    000 00000012221234556789999999999865


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                        ......+.+..|+.....+++.+.+....-+|
T Consensus        75 --~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  106 (267)
T 3ay3_A           75 --VERPWNDILQANIIGAYNLYEAARNLGKPRIV  106 (267)
T ss_dssp             --SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEE
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence              22334556778888888888888775433344

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.39  E-value=0.00027  Score=65.24  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+++|.|+||+|++|..++..|+..| .  +|++++++....  .++..........+++-..+++++++++|+||.++|
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~   97 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKI--HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT   97 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGS--CSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhh--cccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence            36789999999999999999999998 7  999999875211  111111100001122222355667899999999886


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+.      .+      ...+.+++.+++....- ||++|
T Consensus        98 ~~~------~~------~~~~~~~~~~~~~~~~~-iV~iS  124 (236)
T 3qvo_A           98 GED------LD------IQANSVIAAMKACDVKR-LIFVL  124 (236)
T ss_dssp             STT------HH------HHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             CCc------hh------HHHHHHHHHHHHcCCCE-EEEEe
Confidence            421      11      12345666666654343 44444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.36  E-value=0.00031  Score=67.74  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhccc-CCCCceeeecC-CCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTG-PEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~-t~d~~~al~~aDiVIiaag  170 (412)
                      |||.|+||+|++|..++..|+.. |.  +|+++|.+....  .++... .......+++. ...++++++++|+||.+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~   76 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence            68999999999999999999987 77  999999875221  111111 00000112221 1124556789999999988


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .....  ..+..+.+..|+.....+++.+.+..  ..||.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~S  116 (345)
T 2bll_A           77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPS  116 (345)
T ss_dssp             CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEC
T ss_pred             ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEe
Confidence            64311  11234456677777788888887754  4454444

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.36  E-value=0.00065  Score=64.86  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cchh----hhhhhhccc--CCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MNVK----GVAADLSHC--NTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~~~----g~~~dL~~~--~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      +||.|+||+|++|+.++..|+..|.  +|+..+. +...    ....++...  .......+++...+++++++++|+||
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            5899999999999999999999998  9998876 4310    111111100  00000012222345666789999999


Q ss_pred             EcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .+|+.......+ ..+.+..|+.-...+++.+.+.
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~  114 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNS  114 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTC
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence            998632111111 2336778999889999988776

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.35  E-value=0.00023  Score=69.31  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCch---hhhhhhhcccCCCCcee----eecCCCcHHhhcC--CCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV---KGVAADLSHCNTPSQVL----DFTGPEELASALK--GVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~--~aD  163 (412)
                      |||.|+||+|++|..++..|+.. |.  +|++.|.+..   .....++..   ...+.    +++...++.++++  ++|
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISE---SNRYNFEHADICDSAEITRIFEQYQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTT---CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhc---CCCeEEEECCCCCHHHHHHHHhhcCCC
Confidence            68999999999999999999887 67  9999998641   111112211   11121    2221223445566  899


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhh
Q 015172          164 VVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       164 iVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      +||.+||.....  ..+..+.+..|+.....+++.+.+.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~  114 (361)
T 1kew_A           76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY  114 (361)
T ss_dssp             EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999865310  0123445677888888888888876

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.35  E-value=0.0004  Score=67.87  Aligned_cols=116  Identities=14%  Similarity=0.037  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccC--CCCcee----eecCCCcHHhhcCC--
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCN--TPSQVL----DFTGPEELASALKG--  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~--~~~~v~----~i~~t~d~~~al~~--  161 (412)
                      ||+|.|+||+|++|..++..|+..|.  +|+++|.+...   ....++....  ....+.    +++...++.+.+++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            47899999999999999999999997  99999986521   1111111100  001111    22111233445554  


Q ss_pred             CcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCC--CeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCP--DAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p--~aiviv~T  210 (412)
                      .|+||.+||.....  ..+....+..|+.....+++.+.+...  ...||++|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999865321  123344566788888888888887653  14454444

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.34  E-value=0.0003  Score=68.50  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=71.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhccc-CCCCceeeecCCCcHHhhcCC--CcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC-NTPSQVLDFTGPEELASALKG--VNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIi  167 (412)
                      .|+|.|+||+|++|..++..|+..|.  +|+++|.+..  ......+... .......++....++.+++++  +|+||.
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   86 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   86 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence            47899999999999999999999998  9999998752  1111111100 000001122111234445555  899999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||.+...  .....+.+..|+.....+++.+.+......||.+|
T Consensus        87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  131 (357)
T 1rkx_A           87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  131 (357)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEec
Confidence            99864211  11234556778888888888888764233444444

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.33  E-value=0.00036  Score=67.87  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCC-----CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSP-----LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~g-----l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiV  165 (412)
                      |||.|+||+|++|+.++..|+..|     .  +|+.+|.+.....   +.+........+++...++.+++++   +|+|
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~v   76 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HEDNPINYVQCDISDPDDSQAKLSPLTDVTHV   76 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCSSCCEEEECCTTSHHHHHHHHTTCTTCCEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cccCceEEEEeecCCHHHHHHHHhcCCCCCEE
Confidence            689999999999999999999888     6  9999998752211   1111110001122212245566777   9999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      |.+|+...   .+..+....|+.....+++.+.+.++
T Consensus        77 ih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           77 FYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             EECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             EECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            99998652   34556778899999999999988743

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.33  E-value=8.7e-05  Score=71.49  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=70.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaag~  171 (412)
                      +|||+|||+ |.||..++..|+..|.  +|.++|.+...   .++......... .+.  .+..+++ .++|+||++.-.
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~-~~~--~~~~~~~~~~~D~vilavk~   72 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQ-DIV--VKGYEDVTNTFDVIIIAVKT   72 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCE-EEE--EEEGGGCCSCEEEEEECSCG
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeecc-cee--cCchHhcCCCCCEEEEeCCc
Confidence            379999998 9999999999998887  89999997511   011111100111 111  2333455 899999999421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                                      .-+.++++.+..+. |+.+|+.+.|-.+.    ..     .  +|.++|++-
T Consensus        73 ----------------~~~~~~l~~l~~~l~~~~~iv~~~nGi~~----~~-----~--~~~~~v~~g  113 (294)
T 3g17_A           73 ----------------HQLDAVIPHLTYLAHEDTLIILAQNGYGQ----LE-----H--IPFKNVCQA  113 (294)
T ss_dssp             ----------------GGHHHHGGGHHHHEEEEEEEEECCSSCCC----GG-----G--CCCSCEEEC
T ss_pred             ----------------cCHHHHHHHHHHhhCCCCEEEEeccCccc----Hh-----h--CCCCcEEEE
Confidence                            12344555566555 68888888999882    11     1  677888764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.31  E-value=0.00031  Score=66.46  Aligned_cols=99  Identities=19%  Similarity=0.242  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC--CcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG--VNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~--aDiVIiaag~  171 (412)
                      |||.|+||+|++|..++..|+ .|.  +|+.+|.+..      ..    ..   ++....++.+++++  +|+||.+++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~------~~----~~---D~~d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK------EF----CG---DFSNPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS------SS----CC---CTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc------cc----cc---cCCCHHHHHHHHHhcCCCEEEECccc
Confidence            689999999999999999988 787  9999998641      00    01   11111234455665  9999999986


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 PRK--PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...  ...+..+.+..|+.....+++.+.+...  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1233455677888888899988876543  444443

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.30  E-value=0.0005  Score=66.52  Aligned_cols=112  Identities=18%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--------hhhhhhhcc---cCCCCceeeecCCCcHHhhcC-
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--------KGVAADLSH---CNTPSQVLDFTGPEELASALK-  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--------~g~~~dL~~---~~~~~~v~~i~~t~d~~~al~-  160 (412)
                      .|+|.|+||+|++|..++..|+..|.  +|+++|.+..        .....++..   ........+++...++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh
Confidence            36899999999999999999999997  8999987431        111112211   111000112221223445566 


Q ss_pred             -CCcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          161 -GVNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       161 -~aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                       ++|+||.+||.....  ..+..+.+..|+.....+++.+.+....-+|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv  128 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence             899999999864211  0123456678888888888888775544444

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.30  E-value=0.00039  Score=66.09  Aligned_cols=106  Identities=15%  Similarity=0.046  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +++|.|+||+|++|..++..|+..| .  +|++++.+.......++..........++....++.++++++|+||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence            3689999999999999999998877 7  999999876322222232221111011222223456788999999999864


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....      ....|....+.+++.+.+....-+|
T Consensus        83 ~~~~------~~~~~~~~~~~~~~aa~~~gv~~iv  111 (299)
T 2wm3_A           83 WESC------SQEQEVKQGKLLADLARRLGLHYVV  111 (299)
T ss_dssp             HHHT------CHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             Cccc------cchHHHHHHHHHHHHHHHcCCCEEE
Confidence            2111      1245666777788887776533333

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.30  E-value=0.00023  Score=67.05  Aligned_cols=90  Identities=17%  Similarity=0.191  Sum_probs=66.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~  171 (412)
                      |||.|+||+|++|..++..|+..|.  +|+.+|...     .|+.+            ..++.++++  ++|+||.+|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999999997  999998732     12211            123344555  79999999987


Q ss_pred             CCCCC--CchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          172 PRKPG--MTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       172 p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      .....  .+..+.+..|+.....+++.+.+...
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~   99 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA   99 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            54211  34556677888888999999888764

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.29  E-value=0.00039  Score=65.42  Aligned_cols=101  Identities=20%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||.|+||+|++|+.++..|+..  |.  +|+.+|.+.....  ++.+........+++-..++.++++++|+||.+++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57999999999999999999988  77  9999998752211  121111111011222223456788999999999875


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .  ++    +  ..|+.....+++.+.+....-+|
T Consensus        77 ~--~~----~--~~n~~~~~~l~~a~~~~~~~~~v  103 (287)
T 2jl1_A           77 H--YD----N--TLLIVQHANVVKAARDAGVKHIA  103 (287)
T ss_dssp             C--SC----H--HHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             C--cC----c--hHHHHHHHHHHHHHHHcCCCEEE
Confidence            3  11    1  34777778888888775543344

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.28  E-value=0.0006  Score=58.16  Aligned_cols=95  Identities=14%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCC-Cc---HH-hhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP-EE---LA-SALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t-~d---~~-~al~~aDiVIi  167 (412)
                      ..+|.|+|+ |.+|..++..|...|.  +|+++|.++...  ..+.+....    .+.+. ++   ++ ..+.++|+||+
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~--~~~~~~g~~----~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTRV--DELRERGVR----AVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHH--HHHHHTTCE----EEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHHH--HHHHHcCCC----EEECCCCCHHHHHhcCcccCCEEEE
Confidence            358999998 9999999999999998  999999987221  112221111    11111 12   11 13679999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +.+..           ..|..    ++..+++..|+..++.-.|
T Consensus        78 ~~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           78 TIPNG-----------YEAGE----IVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             CCSCH-----------HHHHH----HHHHHHHHCSSSEEEEEES
T ss_pred             ECCCh-----------HHHHH----HHHHHHHHCCCCeEEEEEC
Confidence            84321           33433    3344555678776655444

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.26  E-value=0.00014  Score=71.46  Aligned_cols=93  Identities=23%  Similarity=0.248  Sum_probs=65.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||.|+||+|++|..++..|+..|.+ +|+..|++                     ....+++++++++|+||.+|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------------------~d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------------------TKEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------------------CCHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------------------CCHHHHHHHhccCCEEEECCcCCC
Confidence            79999999999999999999988742 78888774                     001234456778999999998654


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .  .+..+....|+...+.+++.+++......++.+|
T Consensus        59 ~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 P--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             T--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            2  1223345567788888888888766443444443

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.26  E-value=0.00065  Score=64.67  Aligned_cols=98  Identities=17%  Similarity=0.087  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      +|||.|+||+|++|..++..|+..|.  +|++++++..   ....   .++..........++....++.++++++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEE
Confidence            57899999999999999999999997  8999998741   1111   11222111110112222235667899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      .+++.... +        .|....+.+++.+.+..
T Consensus        82 ~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           82 SALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             ECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             ECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            99875421 1        13334455666666654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.24  E-value=0.0014  Score=67.37  Aligned_cols=116  Identities=15%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhC---CCCCeEEEEecCchhh----hhhhhcccC-----------CCCceeeecC-
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMS---PLVSALHLYDVMNVKG----VAADLSHCN-----------TPSQVLDFTG-  151 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~---gl~~ev~L~Di~~~~g----~~~dL~~~~-----------~~~~v~~i~~-  151 (412)
                      ..+|+|.|+||+|++|..++..|+..   |.  +|++++.+....    ...+.....           ....+..+.+ 
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            45789999999999999999999887   66  999999875211    111111100           0011221111 


Q ss_pred             ---------CCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          152 ---------PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       152 ---------t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                               ..++.+.++++|+||.+|+....  ....+.+..|+.....+++.+.+....-++.+-|
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                     12345567899999999987543  3334557789999999999888765555554444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.24  E-value=0.00024  Score=67.11  Aligned_cols=102  Identities=14%  Similarity=0.144  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC-CcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG-VNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~-aDiVIiaag~  171 (412)
                      +|||.|+|+ |++|..++..|+..|.  +|+.++.+...     + +........++....++.+++++ +|+||.+++.
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~-~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~   73 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----M-PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA   73 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----C-CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----c-ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence            478999996 9999999999999998  99999987521     1 11111001122212233445666 9999999874


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ..   .+..+....|+.....+++.+.+....-+|
T Consensus        74 ~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v  105 (286)
T 3gpi_A           74 SE---YSDEHYRLSYVEGLRNTLSALEGAPLQHVF  105 (286)
T ss_dssp             HH---HC-----CCSHHHHHHHHHHTTTSCCCEEE
T ss_pred             CC---CCHHHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence            31   122334566888888888888765434343

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.23  E-value=0.00027  Score=68.34  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCC-------CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSP-------LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVN  163 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~g-------l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aD  163 (412)
                      .+|+|.|+||+|++|..++..|+..|       .  +|+++|.+......  ...........+++...++++++ .++|
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~d   88 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--GFSGAVDARAADLSAPGEAEKLVEARPD   88 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--TCCSEEEEEECCTTSTTHHHHHHHTCCS
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--ccCCceeEEEcCCCCHHHHHHHHhcCCC
Confidence            35799999999999999999999888       5  89999987521110  00000000011222223455556 5899


Q ss_pred             EEEEcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          164 VVVIPAGVPRKP-GMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       164 iVIiaag~p~k~-g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +||.+||..... ..+..+.+..|+.-...+++.+.+..
T Consensus        89 ~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~  127 (342)
T 2hrz_A           89 VIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIAN  127 (342)
T ss_dssp             EEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             EEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999865310 11233445678777788888777654

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.23  E-value=0.00063  Score=65.62  Aligned_cols=111  Identities=17%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcc---cCCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH---CNTPSQVLDFTGPEELASALK--GVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~---~~~~~~v~~i~~t~d~~~al~--~aDiVI  166 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|...  .......+..   ........+++...++.++++  ++|+||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi   78 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence            6899999999999999999999998  999998643  1111111111   111000112221122334444  599999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .+||.....  .....+.+..|+.....+++.+.+....-+|
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv  120 (338)
T 1udb_A           79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI  120 (338)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            999864211  0123345677888888888888776544444

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.22  E-value=0.00054  Score=65.43  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag  170 (412)
                      .|||.|+||+|++|..++..|+..|.  +|+++|.+....   ..    .   ..+++...++.++++  ++|+||.+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~~----~---~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---KF----E---QVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---Ce----E---EecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            36899999999999999999999997  999999754220   00    0   012221233444555  4899999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123344566788888888888877643  444443

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.22  E-value=0.00062  Score=64.95  Aligned_cols=109  Identities=18%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~  171 (412)
                      |||.|+||+|++|..++..|+..|.  +|+++|..... ....+.. .......+++...+++++++  ++|+||.+++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~   76 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-GVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQ   76 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-TCCEECCCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-CeEEEECCCCCHHHHHHHHHhcCCCEEEECccc
Confidence            6899999999999999999999998  99999874311 0111111 11100112221123445566  89999999875


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....  ..+....+..|+.....+++.+.+....-+|
T Consensus        77 ~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv  113 (311)
T 2p5y_A           77 ASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV  113 (311)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            4211  0123345667888888888888776544444

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.20  E-value=0.00082  Score=63.90  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ++||.|+||+|++|+.++..|+..|.  +|+.+|.+...  +....+.+......+..+      ..++.++|+||.+++
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~Dl~~~d~vi~~a~   78 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLELE------ERDLSDVRLVYHLAS   78 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGCC------HHHHTTEEEEEECCC
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeEE------eCccccCCEEEECCc
Confidence            57999999999999999999999998  99999986521  111111111001111111      124569999999988


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ....+  .....+.+. |+.....+++.+.+....-+|
T Consensus        79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v  115 (321)
T 3vps_A           79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVV  115 (321)
T ss_dssp             CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEE
T ss_pred             cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEE
Confidence            65311  112223345 999999999999887644444

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.20  E-value=0.00052  Score=63.81  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHHhhcC-------
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELASALK-------  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~~al~-------  160 (412)
                      .++|.|+||+|++|..++..|+. .|.  +|++.|.+.  ......++........  ..+++-..+.++.++       
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999 898  999999975  2222233322111110  012211112222233       


Q ss_pred             CCcEEEEcCCCCCCCCC--c----hhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPGM--T----RDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~--~----r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +.|+||..||.......  +    -...+..|+.-...+++.+.++. +.+.||++|
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            89999999987543221  1    12345677777777777777665 345665554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.18  E-value=0.0007  Score=64.27  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-------hhhh-hhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-------VKGV-AADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-------~~g~-~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      ++||.|+||+|++|..++..|+..|.  +|+.++++.       .+.. ..++.+........++....++.++++++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~   79 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence            57899999999999999999999887  899999874       1111 1122222111111122222345678899999


Q ss_pred             EEEcCCCC
Q 015172          165 VVIPAGVP  172 (412)
Q Consensus       165 VIiaag~p  172 (412)
                      ||.+++..
T Consensus        80 vi~~a~~~   87 (307)
T 2gas_A           80 VICAAGRL   87 (307)
T ss_dssp             EEECSSSS
T ss_pred             EEECCccc
Confidence            99998754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.18  E-value=0.00048  Score=67.08  Aligned_cols=94  Identities=20%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhh-hhhhhcccCCCCceeeecCCCcHHhhcC--CCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKG-VAADLSHCNTPSQVLDFTGPEELASALK--GVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiV  165 (412)
                      ++||.|+||+|++|..++..|+..|.  +|++++++.    .+. ...++..........++....++.++++  ++|+|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            36899999999999999999999997  999999975    111 1112222221111112222234566788  99999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      |.+++..             |+...+.+++.+.+..
T Consensus        88 i~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           88 VSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             EECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             EECCchh-------------hHHHHHHHHHHHHHcC
Confidence            9998742             4555567777777665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.17  E-value=0.0012  Score=56.92  Aligned_cols=103  Identities=14%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhh-hhhhhcccCCCCceeeecCCCcHHh-hcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKG-VAADLSHCNTPSQVLDFTGPEELAS-ALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g-~~~dL~~~~~~~~v~~i~~t~d~~~-al~~aDiVIiaag  170 (412)
                      +||.|+|+ |.+|..++..|...|.  +|+++|.+. ... ...+...........+.+....+.+ .+.++|+||.+.+
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            58999998 9999999999999998  999999973 211 1111111111110011110112333 3899999999843


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE-EcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI-ISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv-~TNPv~  214 (412)
                      .         |  ..|..    ++..+++..|+..+++ +.||..
T Consensus        81 ~---------d--~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           81 N---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             C---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             C---------h--HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            1         1  33433    3334445567654544 456655

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.17  E-value=0.00044  Score=66.36  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=52.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h-----hhh-hhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V-----KGV-AADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~-----~g~-~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      .+|+|.|+||+|++|..++..|+..|.  +|++++.+. .     +.. ..++..........++....++.++++++|+
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~   80 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDI   80 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCE
Confidence            357899999999999999999999997  899999874 1     111 1112221111111122222346678999999


Q ss_pred             EEEcCCCC
Q 015172          165 VVIPAGVP  172 (412)
Q Consensus       165 VIiaag~p  172 (412)
                      ||.+++..
T Consensus        81 vi~~a~~~   88 (321)
T 3c1o_A           81 VISALPFP   88 (321)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcc
Confidence            99998743

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.13  E-value=0.00078  Score=64.37  Aligned_cols=99  Identities=12%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag  170 (412)
                      .|||.|+||+|++|..++..|+..|.  +|++++.+.    ..|+.+            ..++.++++  ++|+||.+++
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~----~~D~~d------------~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD----ELNLLD------------SRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT----TCCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc----cCCccC------------HHHHHHHHHhcCCCEEEEcCe
Confidence            37899999999999999999999997  888887642    111111            123445666  8999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          171 VPRKP---GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .....   ..+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  106 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLG  106 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEc
Confidence            65311   1133455677888888899888875433 344444

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.11  E-value=0.00063  Score=63.80  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||.|+||+|++|..++..|+..  |.  +|+++|.+.....  ++.+........+++...++.++++++|+||.+++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   76 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE   76 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC---
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            5899999999999999999988  77  9999998752211  1111111110112222234567889999999998753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      .          ..|+...+.+++.+.+....-+|
T Consensus        77 ~----------~~~~~~~~~l~~a~~~~~~~~~v  100 (286)
T 2zcu_A           77 V----------GQRAPQHRNVINAAKAAGVKFIA  100 (286)
T ss_dssp             ---------------CHHHHHHHHHHHHTCCEEE
T ss_pred             c----------hHHHHHHHHHHHHHHHcCCCEEE
Confidence            1          13566667777777766533344

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.11  E-value=0.00024  Score=68.88  Aligned_cols=84  Identities=19%  Similarity=0.187  Sum_probs=56.2

Q ss_pred             HhhhhhhhhhhccCC-CCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceee
Q 015172           70 RSTFARKAQSSEQRP-QYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLD  148 (412)
Q Consensus        70 ~~~f~~~~~~~~~~~-~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~  148 (412)
                      |++....++.+++.- ......-..++|+|||. |.||..+|..+...|.  +|..||.+.....   .        .. 
T Consensus        98 R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~---~--------~~-  162 (290)
T 3gvx_A           98 KNILENNELMKAGIFRQSPTTLLYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN---V--------DV-  162 (290)
T ss_dssp             TTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT---C--------SE-
T ss_pred             HhhhhhhhHhhhcccccCCceeeecchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc---c--------cc-
Confidence            665554444443321 11112234579999998 9999999999998898  9999998752110   0        11 


Q ss_pred             ecCCCcHHhhcCCCcEEEEcCC
Q 015172          149 FTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus       149 i~~t~d~~~al~~aDiVIiaag  170 (412)
                        ...++++.+++||+|+++..
T Consensus       163 --~~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          163 --ISESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             --ECSSHHHHHHHCSEEEECCC
T ss_pred             --ccCChHHHhhccCeEEEEee
Confidence              13467788999999999853

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.11  E-value=0.0032  Score=59.41  Aligned_cols=116  Identities=23%  Similarity=0.334  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCcee----eecCCCcHHhh-------c
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVL----DFTGPEELASA-------L  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------l  159 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++........+.    +++...+.++.       +
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998  9999999752  22222232221111111    11111122222       2


Q ss_pred             CCCcEEEEcCCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHhhCC-CeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPG---MTR---DDLFNINANI----VKTLVEAVADNCP-DAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p-~aiviv~T  210 (412)
                      .+.|+||..||......   .+.   ...+..|+.-    .+.+.+.+.+... .+.||+++
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~is  171 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ  171 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEc
Confidence            48999999998753211   122   2334555554    6677777766552 35555554

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.10  E-value=0.0012  Score=60.68  Aligned_cols=106  Identities=20%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc----CCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL----KGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al----~~aDiVIia  168 (412)
                      |++|.|+||+|++|..++..|+..|.  +|++.|.+......      .....+..   ..+.++.+    .+.|+||.+
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~~~D~~~---~~~~~~~~~~~~~~~d~vi~~   69 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEA------DLSTPGGR---ETAVAAVLDRCGGVLDGLVCC   69 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEEC------CTTSHHHH---HHHHHHHHHHHTTCCSEEEEC
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccc------cccCCccc---HHHHHHHHHHcCCCccEEEEC
Confidence            35799999999999999999999998  99999987521100      01111111   11222233    489999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ||.... .....+.+..|+.-...+++.+.+..   ....||++|
T Consensus        70 Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~s  113 (255)
T 2dkn_A           70 AGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVG  113 (255)
T ss_dssp             CCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred             CCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEe
Confidence            987542 22344556677766666666555442   234455554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.0012  Score=65.48  Aligned_cols=61  Identities=16%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+....         ..  ..   ...++++.+++||+|+++.
T Consensus       170 ~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~---------~~--~~---~~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          170 KGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG---------VD--WI---AHQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT---------SC--CE---ECSSHHHHHHTCSEEEECC
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc---------cC--ce---ecCCHHHHHhcCCEEEEeC
Confidence            3579999998 9999999999998898  999999875220         00  11   1246778899999999984

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.10  E-value=0.00034  Score=68.89  Aligned_cols=115  Identities=14%  Similarity=-0.030  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcccC--CCC-cee----eecCCCcHHhhcCC--
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSHCN--TPS-QVL----DFTGPEELASALKG--  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~~~--~~~-~v~----~i~~t~d~~~al~~--  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|+++|.+....   ...++....  ... .+.    +++...++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  999999875210   111111000  000 121    12111233445554  


Q ss_pred             CcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC----CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC----PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~----p~aiviv~T  210 (412)
                      .|+||.+||.....  ..+..+.+..|+.....+++.+.+..    +.+.||.+|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999865321  01233445667777777777777654    134555554

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.09  E-value=0.0012  Score=65.09  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=70.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchh----------hhhhh-hcccCC---CCc---ee----eec
Q 015172           93 SFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVK----------GVAAD-LSHCNT---PSQ---VL----DFT  150 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~----------g~~~d-L~~~~~---~~~---v~----~i~  150 (412)
                      .|+|.|+||+|++|..++..|+ ..|.  +|+++|.+...          ....+ +.+...   ...   +.    +++
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999999 8997  99999976421          11100 011000   001   11    221


Q ss_pred             CCCcHHhhcC--C-CcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          151 GPEELASALK--G-VNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       151 ~t~d~~~al~--~-aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      -..++.++++  + +|+||.+||.....  ..+..+.+..|+.....+++.+.+....-+|.+
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~  142 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFS  142 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEE
Confidence            1123344555  5 99999999865321  112345677888888889988877654444433

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.08  E-value=0.0017  Score=60.77  Aligned_cols=114  Identities=19%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aDi  164 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++.... .....+++...+.++.       +.+.|+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGPAA-YAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTE-EEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999999999998  999999986  222222221110 0000111111122222       338999


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||+++
T Consensus        86 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  141 (259)
T 4e6p_A           86 LVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMA  141 (259)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            999999753211   122   223445554    4444555555444466666665

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.07  E-value=0.0016  Score=65.41  Aligned_cols=106  Identities=10%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-----hhhhhhccc-------CCCCcee----eecCCC
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-----GVAADLSHC-------NTPSQVL----DFTGPE  153 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-----g~~~dL~~~-------~~~~~v~----~i~~t~  153 (412)
                      +..+++|.|+||+|++|..++..|+..|.  +|++++.+...     .....+...       .....+.    +++...
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~  143 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD  143 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence            34568999999999999999999987787  99999987521     111111110       0001111    221112


Q ss_pred             cHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh
Q 015172          154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       154 d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~  199 (412)
                      ++. .+.++|+||.+|+..... .+..+.+..|+.....+++.+.+
T Consensus       144 ~l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~  187 (427)
T 4f6c_A          144 DVV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ  187 (427)
T ss_dssp             CCC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence            232 578999999999865322 33455677899999999998887

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.06  E-value=0.0004  Score=66.02  Aligned_cols=103  Identities=13%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaa  169 (412)
                      |||.|+||+|++|..++..|+..  |.  +|+++|.+.....   +.. .......+++...++.++++  ++|+||.+|
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~---~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a   76 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTD---VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMA   76 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCH---HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccc---ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECC
Confidence            68999999999999999999887  77  8999998752211   111 11110112221223445666  899999999


Q ss_pred             CCCCCC-CCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          170 GVPRKP-GMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       170 g~p~k~-g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      +..... ..+..+.+..|+.....+++.+.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  110 (312)
T 2yy7_A           77 ALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKI  110 (312)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            864211 123345677888888889988887543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.06  E-value=0.00067  Score=60.60  Aligned_cols=102  Identities=14%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh---cCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA---LKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a---l~~aDiVIiaa  169 (412)
                      +|||.|+||+|++|..++..|+ .|.  +|++.|.+.. ....|+.+            ..+.++.   +...|+||.++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            3689999999999999999999 887  9999998742 01112211            1112222   34589999999


Q ss_pred             CCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEc
Q 015172          170 GVPRKPG---MTR---DDLFNINANIVKTLVEAVADNCP-DAFIHIIS  210 (412)
Q Consensus       170 g~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~T  210 (412)
                      |......   .+.   .+.+..|+.-...+++.+.++.. .+.|+++|
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s  114 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTT  114 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEEC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEc
Confidence            8653221   122   23345677766777777666542 35555554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.05  E-value=0.00061  Score=66.89  Aligned_cols=115  Identities=13%  Similarity=0.013  Sum_probs=69.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccC---CCCcee----eecCCCcHHhhcCC--
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCN---TPSQVL----DFTGPEELASALKG--  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~---~~~~v~----~i~~t~d~~~al~~--  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|+++|.+...   ....++....   ....+.    +++...++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  99999987521   1111121100   001111    22111233445554  


Q ss_pred             CcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCC--CeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCP--DAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p--~aiviv~T  210 (412)
                      .|+||.+||.....  ..+..+.+..|+.....+++.+.+...  ...||.+|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999864311  012334566788888888888877653  13444443

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.04  E-value=0.0013  Score=61.33  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCc-e-eeecCCCcHHhhcC-------CCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ-V-LDFTGPEELASALK-------GVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al~-------~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.......++........ + .+++...+.++.++       +.|
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35788999999999999999999998  9999998753222223322111100 0 11211122333333       899


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~is  137 (255)
T 2q2v_A           82 ILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIA  137 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence            99999997532 1  1122   234555655    5666666665543 35555554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.03  E-value=9.9e-05  Score=70.45  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=37.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +|||+|||+ |.||..++..++.. +  +| .++|+++....  ++... ...      .++++++.++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~~--~~~~~-~g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRAR--NLAEV-YGG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHHH--HHHHH-TCC------CCCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHHH--HHHHH-cCC------ccCCHHHHHhcCCEEEEeC
Confidence            479999998 99999999888776 5  78 59998762211  11111 011      1245555688999999994

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.03  E-value=0.0013  Score=61.13  Aligned_cols=78  Identities=26%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcC-------CCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALK-------GVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-------~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.. .......+++-..+.++.++       ..|
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   88 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGN-NCVFAPADVTSEKDVQTALALAKGKFGRVD   88 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            36799999999999999999999998  999999976  2222222211 00000011111112223333       899


Q ss_pred             EEEEcCCCCC
Q 015172          164 VVVIPAGVPR  173 (412)
Q Consensus       164 iVIiaag~p~  173 (412)
                      +||..||...
T Consensus        89 ~li~~Ag~~~   98 (265)
T 2o23_A           89 VAVNCAGIAV   98 (265)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCccCC
Confidence            9999998753

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.03  E-value=0.001  Score=62.71  Aligned_cols=100  Identities=13%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC--CcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG--VNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~--aDiVIiaa  169 (412)
                      .+|||.|+||+|++|..++..|+..|.........+   .....            +++...++.+++++  +|+||.+|
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~------------D~~d~~~~~~~~~~~~~d~Vih~A   69 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDA------------DLTDTAQTRALFEKVQPTHVIHLA   69 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTC------------CTTSHHHHHHHHHHSCCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---Cceec------------ccCCHHHHHHHHhhcCCCEEEECc
Confidence            468999999999999999999998885100000000   00001            11111234455665  99999999


Q ss_pred             CCCCC---CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRK---PGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k---~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +....   ...+..+.+..|+.....+++.+.+....-+|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v  109 (319)
T 4b8w_A           70 AMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVV  109 (319)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             eecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            87421   11334566788999999999998877644333

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.02  E-value=0.0014  Score=60.57  Aligned_cols=115  Identities=20%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~  161 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.++.+       .+
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999998  999999986  2222223322111100 0 1121112222233       38


Q ss_pred             CcEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHH----HhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP--GMTR---DDLFNINANIVKTLVEAV----ADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~--g~~r---~dl~~~N~~i~~~i~~~i----~~~~p~aiviv~T  210 (412)
                      .|+||..||.....  ..+.   ...+..|+.-...+.+.+    .+. ..+.|+++|
T Consensus        89 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~s  145 (255)
T 1fmc_A           89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTIT  145 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            99999999875321  2222   233455655544444444    333 345555554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.02  E-value=0.0013  Score=60.18  Aligned_cols=71  Identities=17%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc-cCCCCceeeecCCCcHHh-hcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFTGPEELAS-ALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~~t~d~~~-al~~aDiVIiaa  169 (412)
                      |||.|+|+ |.+|..++..|...|.  +|+++|.++....  ++.+ ........+.+-...+.+ .+++||+||.+.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~~--~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRELCE--EFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHHHH--HHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHH--HHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence            68999998 9999999999999998  9999999863211  1111 111000001110111222 478999999984

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.08  E-value=9.9e-05  Score=67.58  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..|||+|||+ |.||..++..|...|.  +|.++|.+..   ...+...    ..   ..+ +.++.++++|+||++...
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~---~~~-~~~~~~~~aDvVilav~~   83 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GA---EVL-CYSEAASRSDVIVLAVHR   83 (201)
Confidence            3579999998 9999999999998887  8999998642   1112111    11   112 455678999999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .    .            ++++. .+....++.+||.++|...
T Consensus        84 ~----~------------~~~v~-~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           84 E----H------------YDFLA-ELADSLKGRVLIDVSNNQK  109 (201)
Confidence            1    1            11111 2222336778888888763

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.02  E-value=0.001  Score=60.87  Aligned_cols=35  Identities=23%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC--CCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP--LVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g--l~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|  .  +|++.|.+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~   39 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDV   39 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCH
Confidence            3579999999999999999999999  7  999999986

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.02  E-value=0.0016  Score=69.76  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhc---ccCCCCceeeecCCCcHHhhcC--CCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLS---HCNTPSQVLDFTGPEELASALK--GVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~---~~~~~~~v~~i~~t~d~~~al~--~aDiV  165 (412)
                      +++|.|+||+|++|..++..|+..|.  +|+++|.+..  .....++.   .........+++...+++++++  ++|+|
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V   88 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV   88 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence            47899999999999999999999997  9999998641  11111121   1111111112221223445566  89999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172          166 VIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       166 Iiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv  208 (412)
                      |.+|+.....  .....+.+..|+.....+++.+.+....-+|.+
T Consensus        89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~  133 (699)
T 1z45_A           89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS  133 (699)
T ss_dssp             EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence            9999864311  012245567888888888888877654444433

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.01  E-value=0.002  Score=59.70  Aligned_cols=116  Identities=22%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~  161 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++........ + .+++-..+.++.+       .+
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  9999999862  222223322111100 0 1121111222223       37


Q ss_pred             CcEEEEcCCCCC--CC--CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          162 VNVVVIPAGVPR--KP--GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~--k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      .|+||..||...  .+  ..+.   .+.+..|+.-...+.+.+.++.   ..+.|++++
T Consensus        91 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~s  149 (260)
T 3awd_A           91 VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIG  149 (260)
T ss_dssp             CCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence            899999998754  11  1222   2334556554444444443321   345555554

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.00  E-value=0.00059  Score=64.83  Aligned_cols=78  Identities=19%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ++||.|+||+|++|..++..|+..|.  +|+.++++..    ....   ..+..........++....++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   81 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   81 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence            57899999999999999999999997  8999998741    1111   1222211111011222223456788999999


Q ss_pred             EEcCCCC
Q 015172          166 VIPAGVP  172 (412)
Q Consensus       166 Iiaag~p  172 (412)
                      |.+++..
T Consensus        82 i~~a~~~   88 (308)
T 1qyc_A           82 ISTVGSL   88 (308)
T ss_dssp             EECCCGG
T ss_pred             EECCcch
Confidence            9998753

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.00  E-value=0.00018  Score=71.17  Aligned_cols=61  Identities=11%  Similarity=0.181  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+.....         .  ...   ..++++.+++||+|+++.
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~---------g--~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT---------N--YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC---------C--SEE---ESCHHHHHHTCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc---------C--cee---cCCHHHHHhcCCEEEEec
Confidence            3578999998 9999999999998898  8999998752110         1  111   246777899999999985

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.00  E-value=0.00075  Score=64.67  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhh-hhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGV-AADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~-~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +||.|+||+|++|..++..|+..|.  +|+.++++.. ... ..++..........++....++.++++++|+||.+++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            4899999999999999999999997  8999998752 211 11222222111111222223566789999999999874


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      .
T Consensus        90 ~   90 (318)
T 2r6j_A           90 P   90 (318)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.99  E-value=0.00045  Score=67.97  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+......  ....  .  +. .  . ++++.+++||+||++..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~--g--~~-~--~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF--Q--AE-F--V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT--T--CE-E--C-CHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc--C--ce-e--C-CHHHHHhhCCEEEEeCC
Confidence            4579999998 9999999999988898  89999987521111  1111  1  11 1  2 56677899999999964

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.99  E-value=0.0019  Score=59.70  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=64.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHh---hcCCCcE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELAS---ALKGVNV  164 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~---al~~aDi  164 (412)
                      ..+.++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++... ......+++...+.++   .+.+.|+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKDN-YTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSS-EEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhccC-ccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            34567899999999999999999999998  999999986  22222222211 0000011111111222   2347899


Q ss_pred             EEEcCCCCCCC------CCchhhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcCC
Q 015172          165 VVIPAGVPRKP------GMTRDDLFNINANI----VKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       165 VIiaag~p~k~------g~~r~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      ||..||.....      ..+-...+..|+.-    .+.+.+.+.+. ..+.||+++-.
T Consensus        88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~  144 (249)
T 3f9i_A           88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSI  144 (249)
T ss_dssp             EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccH
Confidence            99999875321      11223344555443    44444444433 34566666543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.98  E-value=0.0011  Score=62.59  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aD  163 (412)
                      +++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++.. .......+++...+.++.       +.+.|
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id   81 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYPD-RAEAISLDVTDGERIDVVAADVLARYGRVD   81 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCTT-TEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccC-CceEEEeeCCCHHHHHHHHHHHHHhCCCCC
Confidence            35788899999999999999999998  9999999862  111111111 000000111111122222       23789


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||.... +  ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|
T Consensus        82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~s  137 (281)
T 3m1a_A           82 VLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNIS  137 (281)
T ss_dssp             EEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence            99999987432 1  2222   2245556555    666666666544 34455554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.97  E-value=0.0045  Score=58.36  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=70.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--------------hhhhhhhhcccCCCCc-e-eeecCCCcHH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--------------VKGVAADLSHCNTPSQ-V-LDFTGPEELA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--------------~~g~~~dL~~~~~~~~-v-~~i~~t~d~~  156 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.              ......++........ + .+++-..+.+
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            35789999999999999999999998  999999872              1111112222111100 0 1121111222


Q ss_pred             hh-------cCCCcEEEEcCCCCCCC-CCc---hhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          157 SA-------LKGVNVVVIPAGVPRKP-GMT---RDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       157 ~a-------l~~aDiVIiaag~p~k~-g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +.       +...|++|..||..... ..+   -...+..|+.-...+.+.+.++. ..+.||+++
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            22       23899999999975422 122   23456677777777778777766 456666655

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.96  E-value=0.0036  Score=57.39  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIi  167 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++.  .......+++...+.++.++   ..|+||.
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECP--GIEPVCVDLGDWDATEKALGGIGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc--CCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence            46899999999999999999999998  9999999762  11111111  10000112221122333343   5799999


Q ss_pred             cCCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP---GMTR---DDLFNINANIVKTLVE----AVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~---g~~r---~dl~~~N~~i~~~i~~----~i~~~~p~aiviv~T  210 (412)
                      .||.....   ..+.   ...+..|+.-...+.+    .+.+....+.||++|
T Consensus        83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~s  135 (244)
T 1cyd_A           83 NAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS  135 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence            99865321   1122   2234556554444444    443333245565554

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.96  E-value=0.0026  Score=59.50  Aligned_cols=78  Identities=23%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcC-------CCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALK-------GVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-------~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++.. .......+++-..+.++.++       +.|
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-GGFAVEVDVTKRASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-CCEEEECCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-CCeEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            36799999999999999999999998  9999999862  222222221 10000011211122222333       899


Q ss_pred             EEEEcCCCCC
Q 015172          164 VVVIPAGVPR  173 (412)
Q Consensus       164 iVIiaag~p~  173 (412)
                      +||..||...
T Consensus        89 ~lv~~Ag~~~   98 (263)
T 3ak4_A           89 LLCANAGVST   98 (263)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCcCC
Confidence            9999999753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.95  E-value=0.0024  Score=59.22  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.......  ...+++...+.++       .+.+
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45788999999999999999999998  999999986  222233332211100  0011111112222       2348


Q ss_pred             CcEEEEcCCCCC----CC--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172          162 VNVVVIPAGVPR----KP--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       162 aDiVIiaag~p~----k~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      .|+||..||...    .+  ..+.   .+.+..|+.-    .+.+.+.+.+.. .+.|++++-
T Consensus        87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  148 (253)
T 3qiv_A           87 IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSS  148 (253)
T ss_dssp             CCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence            999999998731    11  1222   2345556554    555666655443 556666553

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.94  E-value=0.00036  Score=69.29  Aligned_cols=65  Identities=17%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+. ..|.  +|..+|.+.. .....++   .    .. +  ..++++.+++||+|+++.
T Consensus       162 ~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~---g----~~-~--~~~l~ell~~aDvVil~v  228 (348)
T 2w2k_A          162 RGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL---G----AE-R--VDSLEELARRSDCVSVSV  228 (348)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH---T----CE-E--CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc---C----cE-E--eCCHHHHhccCCEEEEeC
Confidence            3579999998 999999999998 8888  9999999752 1111111   1    11 1  235777789999999985

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.93  E-value=0.0032  Score=60.54  Aligned_cols=117  Identities=22%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.......  ...+++...+.++.       +.+
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999998  999999986  222333333221110  00122111122222       237


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      .|+||..||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.|+++|-
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            89999999975321   1122   223444543    44555555555544566666653

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.93  E-value=0.0022  Score=60.15  Aligned_cols=115  Identities=18%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHHhh-------c
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELASA-------L  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------l  159 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++........+.    +++-..+.++.       +
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999998  999999986  222222232210000111    22111122222       2


Q ss_pred             CCCcEEEEcCCCCCC--C--CCch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRK--P--GMTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k--~--g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...|+||..||....  +  ..+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  151 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTA  151 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            378999999997543  1  1122   22344454    34455666665543 34555554

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.92  E-value=0.00032  Score=69.20  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+.......++   .    .. +   .++++.+++||+||++...
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~~~l~~aDvVil~vp~  214 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AE-F---KPLEDLLRESDFVVLAVPL  214 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CE-E---CCHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----cc-c---CCHHHHHhhCCEEEECCCC
Confidence            4579999998 9999999999999898  99999997633211111   1    11 1   3577788999999999643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.91  E-value=0.0053  Score=57.76  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.++       .+.+
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            46899999999999999999999998  999999986  2222222322111100 0 11111111222       2347


Q ss_pred             CcEEEEcCCCCCCCCC---c---hhhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172          162 VNVVVIPAGVPRKPGM---T---RDDLFNINANI----VKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       162 aDiVIiaag~p~k~g~---~---r~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      .|+||..||.......   +   ..+.+..|+.-    .+.+.+.+.+. ..+.||++|-
T Consensus       109 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS  167 (272)
T 1yb1_A          109 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVAS  167 (272)
T ss_dssp             CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence            9999999997542211   1   12334455544    44444444433 3455555553

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.91  E-value=0.0012  Score=61.30  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+.
T Consensus         8 k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~   41 (264)
T 2pd6_A            8 ALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDR   41 (264)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            5799999999999999999999998  999999986

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.91  E-value=0.00062  Score=66.72  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.+....  .         .+..+.+..++++.+++||+|+++.
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~--~---------~~~~~~~~~~l~ell~~aDiV~l~~  201 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW--P---------GVESYVGREELRAFLNQTRVLINLL  201 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC--T---------TCEEEESHHHHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh--h---------hhhhhcccCCHHHHHhhCCEEEEec
Confidence            4579999998 9999999999998898  999999864210  0         0111222356788899999999985

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.90  E-value=0.002  Score=60.26  Aligned_cols=114  Identities=18%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHHhhcC------C
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELASALK------G  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~------~  161 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++........+.    +++-..+.++.++      +
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999998  999999986  222222232110000111    2211122222333      4


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||.....   ..+.   ...+..|+.-.    +.+.+.+.+.. .+.||++|
T Consensus        86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  143 (260)
T 2z1n_A           86 ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIG  143 (260)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence            99999999975321   1122   22345555444    55555554433 35555554

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.90  E-value=0.0031  Score=58.97  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccC-CCCceeeecCCCcHHhhc-------CCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCN-TPSQVLDFTGPEELASAL-------KGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~-~~~~v~~i~~t~d~~~al-------~~a  162 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++.... ......+++-..+.++.+       .+.
T Consensus        16 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           16 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999999998  9999998762  22222222110 000001111111222222       379


Q ss_pred             cEEEEcCCCCCCC-----CCc---hhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          163 NVVVIPAGVPRKP-----GMT---RDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~-----g~~---r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      |+||..+|.....     ..+   ..+.+..|+.-...+++.+.++.   ..+.||+++
T Consensus        94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is  152 (278)
T 2bgk_A           94 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTA  152 (278)
T ss_dssp             CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEEC
T ss_pred             CEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999999875321     112   12345556555455555444432   345565554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.90  E-value=0.0022  Score=63.10  Aligned_cols=105  Identities=16%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceee-ecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLD-FTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~-i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .|+|.|+||+|++|..++..|+..|.  +|++++.+.......++... .......+ ++...++.++++++|+||..++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~   82 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   82 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence            46899999999999999999999887  89999987532211222221 10000112 2222345667899999998765


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ...   .      ..|... +.+++.+.+.. .. .||.+|
T Consensus        83 ~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~S  112 (352)
T 1xgk_A           83 SQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSS  112 (352)
T ss_dssp             STT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEE
T ss_pred             CCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeC
Confidence            321   0      124444 67777777665 33 344444

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.87  E-value=0.0032  Score=58.41  Aligned_cols=114  Identities=24%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCe-EEEEecCchhhhhhhhcccCCCCcee----eecCC-CcHHhh-------c
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSA-LHLYDVMNVKGVAADLSHCNTPSQVL----DFTGP-EELASA-------L  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-v~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t-~d~~~a-------l  159 (412)
                      .++|.|+||+|++|..++..|+..|.  + |++.|.+.......++........+.    +++-. .+.++.       +
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            36799999999999999999999997  6 99999875211122222111011111    22111 112222       3


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC------CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC------PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~------p~aiviv~T  210 (412)
                      .+.|+||..||...  .......+..|+.-...+.+.+.++.      +.+.|+++|
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~is  137 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence            48999999998742  22334445566554444444443322      246666665

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.87  E-value=0.0061  Score=56.91  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccC-C-CC--ceeeecCCCcHHhh-------
Q 015172           93 SFKVAVLGAAGG--IGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCN-T-PS--QVLDFTGPEELASA-------  158 (412)
Q Consensus        93 ~~KV~VIGAaG~--vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~-~-~~--~v~~i~~t~d~~~a-------  158 (412)
                      .++|.|+||+|.  +|..++..|+..|.  +|++.|.+. ......++.... . ..  ...+++-..+.++.       
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            357899999877  99999999999998  999999876 222222222211 1 00  01122222222222       


Q ss_pred             cCCCcEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          159 LKGVNVVVIPAGVPRK-----P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       159 l~~aDiVIiaag~p~k-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +...|++|..||....     +  ..+.   ...+..|+.-...+.+.+.++. +.+.||+++
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence            2478999999987542     1  1222   2344566666666777777665 456666665

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.86  E-value=0.0012  Score=62.97  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAG  170 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag  170 (412)
                      ||.|+||+|++|..++..|+..  |.  +|++.|.+.....       .......+++...++.++++  ++|+||.+|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-------TCCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-------CceEEEecCCCHHHHHHHHhhcCCcEEEECCc
Confidence            5899999999999999999887  66  8999998642110       00100112211123444565  8999999988


Q ss_pred             CCCCCC-CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKPG-MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ...... .+..+.+..|+.....+++.+.+....-+|
T Consensus        72 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v  108 (317)
T 3ajr_A           72 ILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVV  108 (317)
T ss_dssp             CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEE
Confidence            642111 123455677888888898888876544344

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.86  E-value=0.01  Score=55.54  Aligned_cols=114  Identities=21%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCcee----eecCCCcHHhh-------cC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVL----DFTGPEELASA-------LK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------l~  160 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++........+.    +++-..+.++.       +.
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999998  9999999762  22222232210011111    11111122222       23


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhHH----HHHHHHHHHHhhC--CCeEEEEEcC
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINAN----IVKTLVEAVADNC--PDAFIHIISN  211 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~----i~~~i~~~i~~~~--p~aiviv~TN  211 (412)
                      ..|+||..||...  .....+.+..|+.    ..+.+.+.+.+..  +.+.||++|-
T Consensus        86 ~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           86 RLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             CCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence            5799999999753  2233344555654    5566666665543  2466666653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.85  E-value=0.0032  Score=57.92  Aligned_cols=34  Identities=21%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~   36 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSA   36 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5789999999999999999999997  999999976

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.85  E-value=0.0049  Score=56.34  Aligned_cols=105  Identities=20%  Similarity=0.190  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCC----cEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGV----NVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a----DiVI  166 (412)
                      |++|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++. ........+++...+.++.++..    |+||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLS-NNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCS-SCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh-hccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            34689999999999999999999998  899999986  222222221 11111011222112222233332    9999


Q ss_pred             EcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhh
Q 015172          167 IPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       167 iaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      ..||......   .+.   ...+..|+.-...+.+.+.++
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  117 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKR  117 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998754221   122   223455655555555554443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.83  E-value=0.0025  Score=59.50  Aligned_cols=114  Identities=25%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.. .......+++...+.++.       +.+.|
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-AARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-GEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            36799999999999999999999998  9999999862  222222210 000000111111122222       23899


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  137 (254)
T 1hdc_A           82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNIS  137 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence            999999975421   1122   223445543    3345666665543 45555554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.0016  Score=64.54  Aligned_cols=72  Identities=28%  Similarity=0.366  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.|||.|||| |+||..++..|+.. .  +|.+.|++.....  .+.+......+ +.....++.+.++++|+||.+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~~--~~~~~~~~~~~-d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENLE--KVKEFATPLKV-DASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHHH--HHTTTSEEEEC-CTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHHH--HHhccCCcEEE-ecCCHHHHHHHHhCCCEEEEecC
Confidence            4589999998 99999999887654 4  8999999862111  11111111111 12222345667899999999964

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.83  E-value=0.0029  Score=58.23  Aligned_cols=114  Identities=16%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCcee----eecCCCcHHhh-------c
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVL----DFTGPEELASA-------L  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------l  159 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++...   ..+.    +++...+.++.       +
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            36799999999999999999999998  9999999762  2222222211   0111    11111112222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172          160 KGVNVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      ...|+||..+|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS  142 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3699999999875321   1222   234555655    44555555544332256666553

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.0043  Score=57.81  Aligned_cols=77  Identities=21%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aDi  164 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+..  .....++.. .......+++...+.++.       +...|+
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGA-AVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5788999999999999999999998  9999999862  222222211 000000112111122222       338999


Q ss_pred             EEEcCCCCC
Q 015172          165 VVIPAGVPR  173 (412)
Q Consensus       165 VIiaag~p~  173 (412)
                      +|..||...
T Consensus        85 lv~nAg~~~   93 (257)
T 3tpc_A           85 LVNCAGTAP   93 (257)
T ss_dssp             EEECCCCCC
T ss_pred             EEECCCCCC
Confidence            999999753

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.82  E-value=0.0044  Score=57.76  Aligned_cols=115  Identities=27%  Similarity=0.402  Sum_probs=65.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~a  162 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.++.+       .+.
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999999998  999999986  2222223322111100 0 1221112222223       389


Q ss_pred             cEEEEcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRK-P--GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k-~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.... +  ..+..   ..+..|+.    +.+.+.+.+.+....+.||+++
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  138 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINAC  138 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            999999987532 1  11222   23445543    4455555555443246666654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.82  E-value=0.0065  Score=57.19  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--------------hhhhhhhhcccCCCCc--eeeecCCCcHH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--------------VKGVAADLSHCNTPSQ--VLDFTGPEELA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--------------~~g~~~dL~~~~~~~~--v~~i~~t~d~~  156 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.              ......++........  ..+++-..+.+
T Consensus        13 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           13 GKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            46789999999999999999999998  999999861              1111112221111100  01121111222


Q ss_pred             hh-------cCCCcEEEEcCCCCCCCCC--chhhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172          157 SA-------LKGVNVVVIPAGVPRKPGM--TRDDLFNINAN----IVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       157 ~a-------l~~aDiVIiaag~p~k~g~--~r~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +.       +...|++|..||.......  +-...+..|+.    +.+.+.+.+.+....+.||+++-
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            22       2389999999997532211  11233445543    44555555555544666666653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.81  E-value=0.0027  Score=59.31  Aligned_cols=114  Identities=17%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhccc-CCCCc-e-eeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC-NTPSQ-V-LDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~-~~~~~-v-~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|++..  .....++... ..... + .+++-..+.++.       +.+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999998  9999999862  2222223211 11100 0 112111122222       238


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is  143 (263)
T 3ai3_A           86 ADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNA  143 (263)
T ss_dssp             CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            99999999975321   1222   223444544    3444444444332 45555554

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.81  E-value=0.0034  Score=58.38  Aligned_cols=115  Identities=17%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aD  163 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.. .......+++-..+.++       .+...|
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGK-KARAIAADISDPGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT-TEEECCCCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            35788999999999999999999998  999999986  2222222211 00000001111112222       234799


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+....+.|++++
T Consensus        83 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  139 (247)
T 3rwb_A           83 ILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIA  139 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            99999997532 2  1222   223445544    4455555566655456666654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.81  E-value=0.0014  Score=63.90  Aligned_cols=61  Identities=21%  Similarity=0.191  Sum_probs=47.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.||..+|..+...|.  +|..+|.+..    .+    .    ..   ...++++.+++||+|+++.
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~----~~----~----~~---~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK----EG----P----WR---FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC----CS----S----SC---CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc----cc----C----cc---cCCCHHHHHhhCCEEEEeC
Confidence            34579999998 9999999999998898  9999998642    01    1    11   1235667899999999985

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.81  E-value=0.0058  Score=57.06  Aligned_cols=115  Identities=11%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~~a  162 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........ + .+++-..+.++.       +...
T Consensus         7 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            7 KVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788889999999999999999998  999999986  2222333332211100 0 112111122222       3478


Q ss_pred             cEEEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRK-P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k-~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.... +  ..+.   ...+..|+.-    .+.+.+.+.+....+.|++++
T Consensus        85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~is  142 (257)
T 3imf_A           85 DILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMV  142 (257)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEEC
Confidence            999999986532 2  1222   2234455543    444444443444455565554

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.80  E-value=0.0027  Score=57.99  Aligned_cols=112  Identities=21%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDi  164 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++..  ......+++...+.++       .+.+.|+
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEG--ALPLPGDVREEGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTT--CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhh--ceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4699999999999999999999998  9999999752  212222211  0000011111111222       2347899


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKPG---MTR---DDLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g---~~r---~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      ||..+|......   .+.   .+.+..|+.-.    +.+.+.+.+. ..+.||++|
T Consensus        82 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~is  136 (234)
T 2ehd_A           82 LVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVG  136 (234)
T ss_dssp             EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEEC
Confidence            999998753211   121   23344554433    4455555443 345565554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.80  E-value=0.004  Score=57.95  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCC---CCCeEEEEecCchh-hhhhhhcccCCCC--ceeeecCCCcHHhhcC-----
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSP---LVSALHLYDVMNVK-GVAADLSHCNTPS--QVLDFTGPEELASALK-----  160 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~g---l~~ev~L~Di~~~~-g~~~dL~~~~~~~--~v~~i~~t~d~~~al~-----  160 (412)
                      ++++|.|+||+|++|..++..|+..|   .  .|++.|.+... ....++.......  ...+++...+.++.++     
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            35689999999999999999999998   6  99999998621 1122222111110  0012222223333333     


Q ss_pred             ----CCcEEEEcCCCCC
Q 015172          161 ----GVNVVVIPAGVPR  173 (412)
Q Consensus       161 ----~aDiVIiaag~p~  173 (412)
                          ..|+||..||...
T Consensus        98 ~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           98 TKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HGGGCCSEEEECCCCCC
T ss_pred             cCCCCccEEEECCCcCC
Confidence                7999999999754

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.79  E-value=0.0013  Score=61.31  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.. .......+++...+.++       .+...|
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGE-RSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT-TEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            35788999999999999999999998  9999999862  222222210 00000001111111222       234579


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+..  +.||+++
T Consensus        83 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~is  137 (253)
T 1hxh_A           83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMA  137 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEEC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEc
Confidence            99999997532 1  1222   223455543    4555555555433  6666655

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.79  E-value=0.005  Score=58.29  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~  160 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.   ......++.......  ...+++-..+.++.       +.
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999999998  899998765   222223333221110  00112111122222       23


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||......   .+.   ...+..|+.-...+.+.+.++. ..+.||+++
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            8999999999754221   122   2345567665566666666654 455565554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.78  E-value=0.0033  Score=57.61  Aligned_cols=79  Identities=25%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcc-cCCCCc--eeeecCCCcHHhhc-------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH-CNTPSQ--VLDFTGPEELASAL-------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~-~~~~~~--v~~i~~t~d~~~al-------~  160 (412)
                      +++|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.. ......  ..+++...+.++.+       .
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            45788999999999999999999998  899999986  2222333321 111100  01121112222233       3


Q ss_pred             CCcEEEEcCCCCC
Q 015172          161 GVNVVVIPAGVPR  173 (412)
Q Consensus       161 ~aDiVIiaag~p~  173 (412)
                      ..|++|..||...
T Consensus        80 ~id~li~~Ag~~~   92 (235)
T 3l77_A           80 DVDVVVANAGLGY   92 (235)
T ss_dssp             SCSEEEECCCCCC
T ss_pred             CCCEEEECCcccc
Confidence            7899999999754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.77  E-value=0.0032  Score=58.19  Aligned_cols=114  Identities=14%  Similarity=0.092  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aDi  164 (412)
                      ++|.|+||+|.+|..++..|+..|.  .|++.|++.  ......++.. .......+++...+.+       +.+...|+
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   80 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-AVIGIVADLAHHEDVDVAFAAAVEWGGLPEL   80 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-GEEEEECCTTSHHHHHHHHHHHHHHHCSCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHHHHhcCCCcE
Confidence            5788999999999999999999998  999999986  2222222211 1000001111111122       22347899


Q ss_pred             EEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEc
Q 015172          165 VVIPAGVPRK-P--GMTR---DDLFNINANIVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      +|..||.... +  ..+.   ...+..|+.-...+++.+.+..  ..+.|++++
T Consensus        81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~is  134 (235)
T 3l6e_A           81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVL  134 (235)
T ss_dssp             EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            9999997432 1  1222   2345566655544444443332  233555544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.77  E-value=0.0062  Score=58.15  Aligned_cols=116  Identities=13%  Similarity=0.154  Sum_probs=69.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhh-hcccCCCCc-e-eeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAAD-LSHCNTPSQ-V-LDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~d-L~~~~~~~~-v-~~i~~t~d~~~-------al~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+..  .....+ +........ + .+++-..+.++       .+.
T Consensus        47 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           47 GKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999998  9999999862  111112 221111100 0 01111111222       234


Q ss_pred             CCcEEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG----MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g----~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||.....+    .+.   ...+..|+.-...+.+.+.++. ..+.||+++
T Consensus       125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            7899999998643221    122   3346677777777777777665 455665554

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.77  E-value=0.0076  Score=57.16  Aligned_cols=116  Identities=19%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........ + .+++-..+.++.       +..
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36788999999999999999999998  999999986  2222333332211110 0 122111222222       238


Q ss_pred             CcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||......   .+..   ..+..|+.    +.+.+.+.+.+....+.|++++
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~is  168 (276)
T 3r1i_A          110 IDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTA  168 (276)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            999999999754221   1222   22345543    4455555555444446666654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.77  E-value=0.0029  Score=58.02  Aligned_cols=114  Identities=22%  Similarity=0.301  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc--hhhhhhhhcccCCCCc--e-eeecCCCcHHhh-------cC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN--VKGVAADLSHCNTPSQ--V-LDFTGPEELASA-------LK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~--~~g~~~dL~~~~~~~~--v-~~i~~t~d~~~a-------l~  160 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++. +.+.  ......++........  + .+++-..+.++.       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999998  89888 6664  2222222222111110  1 112111122222       35


Q ss_pred             CCcEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMT---RDDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~---r~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +.|+||..||.....   ..+   ....+..|+.-    .+.+.+.+.+.. .+.||++|
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~s  138 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNIT  138 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence            899999999975421   112   12334555554    555555555443 35555554

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.75  E-value=0.0016  Score=58.21  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIia  168 (412)
                      |+|.|+||+|++|..++..|+..    +|++.|.+..  .....++.......   +++-..+.++.++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPA---DLADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCC---CTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEe---eCCCHHHHHHHHHhcCCCCEEEEC
Confidence            47899999999999999988877    8999999762  21112221100011   2211223334444   89999999


Q ss_pred             CCCCCCC------CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKP------GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~------g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|.....      ..+....+..|+.-...+.+.+.+. +.+.|+++|
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~s  120 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFG  120 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEEC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEc
Confidence            9875321      1123345667777777777776332 345555554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.75  E-value=0.004  Score=60.82  Aligned_cols=133  Identities=18%  Similarity=0.204  Sum_probs=75.6

Q ss_pred             CceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc--CCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL--KGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al--~~aDiVIiaa  169 (412)
                      ++||.|||. |.+|.+ +|..|..+|.  +|..+|.+........|.+..    +..+.+ .+.+ .+  .++|+||...
T Consensus         4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g----i~v~~g-~~~~-~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG----IDVYEG-FDAA-QLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT----CEEEES-CCGG-GGGSCCCSEEEECT
T ss_pred             CcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC----CEEECC-CCHH-HcCCCCCCEEEECC
Confidence            679999999 999995 8999999999  999999975211222343322    222233 3444 45  4899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhh-CCCeEEEEEcCCCC--CcHHHHHHHHHHhCCCCCCCeEe
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADN-CPDAFIHIISNPVN--STVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~aiviv~TNPv~--~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |+|...-+ .......+++++.++ +.+.++ ..+..+|-+|-+..  +++.++.++++.. |+++.-++|
T Consensus        75 gi~~~~p~-~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~~~~~g  142 (326)
T 3eag_A           75 VAKRGMDV-VEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAPGFLIG  142 (326)
T ss_dssp             TCCTTCHH-HHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             CcCCCCHH-HHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEec
Confidence            88742211 011112333443332 122222 23334444554443  4455667777776 355544444

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.75  E-value=0.0048  Score=58.22  Aligned_cols=114  Identities=23%  Similarity=0.267  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aD  163 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++.. .......+++...+.++       .+...|
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-GAVHHVVDLTNEVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-TCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-CeEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35788999999999999999999998  999999986  2222223311 11000112211112222       234899


Q ss_pred             EEEEcCCCCCC-CC----Cch---hhHHHhhHHHHHHHHHHH----HhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-PG----MTR---DDLFNINANIVKTLVEAV----ADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~g----~~r---~dl~~~N~~i~~~i~~~i----~~~~p~aiviv~T  210 (412)
                      ++|..||.... +.    .+.   ...+..|+.-...+++.+    .+. ..+.||+++
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~is  145 (271)
T 3tzq_B           88 IVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNIS  145 (271)
T ss_dssp             EEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             EEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEC
Confidence            99999997522 21    122   234556655444444444    443 345565554

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.75  E-value=0.0043  Score=56.96  Aligned_cols=117  Identities=19%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe-cCc--hhhhhhhhcccCCCCc--eeeecCCCcHHhhc-------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD-VMN--VKGVAADLSHCNTPSQ--VLDFTGPEELASAL-------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D-i~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~~al-------~  160 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.| .+.  ......++........  ..+++...+.++.+       .
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            36799999999999999999999998  899984 443  2222222222111100  01121111222222       3


Q ss_pred             CCcEEEEcCCCCCCC------CCchhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEcC
Q 015172          161 GVNVVVIPAGVPRKP------GMTRDDLFNINANIVKTLVEAVADNC---PDAFIHIISN  211 (412)
Q Consensus       161 ~aDiVIiaag~p~k~------g~~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~TN  211 (412)
                      +.|+||..||.....      .....+.+..|+.-...+.+.+.++.   ..+.||++|-
T Consensus        83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  142 (247)
T 2hq1_A           83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITS  142 (247)
T ss_dssp             CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            899999999875321      11223445666655444444443321   3456656553

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.75  E-value=0.0031  Score=59.14  Aligned_cols=114  Identities=23%  Similarity=0.306  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcC-------CCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALK-------GVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-------~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++... ......+++...+.++.++       +.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-ARYVHLDVTQPAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-EEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcC-ceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35799999999999999999999998  9999999862  2222222211 0000011111122223333       899


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||.....   ..+.   ...+..|+.-.    +.+.+.+.+.. .+.||++|
T Consensus        84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  139 (260)
T 1nff_A           84 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINIS  139 (260)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence            999999975321   1222   22344554433    55555555443 45555554

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.75  E-value=0.0018  Score=59.43  Aligned_cols=115  Identities=19%  Similarity=0.300  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcc-cCCCCc-e-eeecCCCcHHhhc-------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSH-CNTPSQ-V-LDFTGPEELASAL-------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~-~~~~~~-v-~~i~~t~d~~~al-------~  160 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++.. ...... + .+++...+.++.+       .
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            35789999999999999999999998  9999999762  222222221 011100 0 0111112222233       3


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MT---RDDLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      +.|+||..||......   .+   ..+.+..|+.-.    +.+.+.+.+. ..+.||++|
T Consensus        85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~s  143 (248)
T 2pnf_A           85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNIS  143 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEEC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            8999999998754211   12   223455565544    4444444333 235555554

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.74  E-value=0.0023  Score=60.91  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~   60 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKM   60 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46799999999999999999999998  999999986

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.74  E-value=0.0016  Score=60.51  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC--CcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG--VNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~--aDiVIiaag~  171 (412)
                      |||.|+||+|++|..++..|+ .|.  +|+++|.+....      . .   ...+++...++.+.+++  +|+||.++|.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~~~------~-~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-ERH--EVIKVYNSSEIQ------G-G---YKLDLTDFPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-TTS--CEEEEESSSCCT------T-C---EECCTTSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCChhHHHHHHHHh-cCC--eEEEecCCCcCC------C-C---ceeccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999988 475  899999875211      0 0   11122212234445665  9999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 PRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ....  ..+..+.+..|+.....+++.+.+...  .++++|
T Consensus        68 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           68 TDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             cChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            5321  123345567788888888888877543  444443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.73  E-value=0.0027  Score=59.82  Aligned_cols=118  Identities=17%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++. ........+++...+.++.       +...|
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   82 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRLH   82 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCCCc
Confidence            35799999999999999999999998  9999999862  22222221 0000000111111122222       34679


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ++|..||.....   ..+.   ...+..|+.-...+.+.+.++. ..+.||++|-..
T Consensus        83 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  139 (263)
T 2a4k_A           83 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  139 (263)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            999999875321   1222   2345667766666666665554 245666665443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.72  E-value=0.0033  Score=58.25  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=64.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|. +.  ......++........ + .+++-..+.++.       +.+
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            5 KVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999999999999999999998  9999998 54  2222223322111100 0 112111122222       237


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 2uvd_A           83 VDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIA  140 (246)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            99999999975421   1222   2234555544    455555555443 35555554

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.72  E-value=0.0059  Score=57.38  Aligned_cols=116  Identities=20%  Similarity=0.275  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcc-cCCC--CceeeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH-CNTP--SQVLDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~-~~~~--~~v~~i~~t~d~~~-------al~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.. ....  ....+++-..+.++       .+.
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35788889999999999999999998  999999986  2222233322 1111  00012222222222       234


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||......   .+.   ...+..|+.    +.+.+.+.+.+....+.||+++
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~is  157 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVA  157 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            8999999999754221   122   223445543    4455555555554456666665

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.72  E-value=0.004  Score=57.61  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcccCCCCceeeecCCCcHHhhc----CCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSHCNTPSQVLDFTGPEELASAL----KGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~~~~~~~v~~i~~t~d~~~al----~~aDiV  165 (412)
                      |++|.|+||+|.+|..++..|+..|.  +|++.|++....   ...|+.+            ..+.++.+    ...|+|
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~------------~~~v~~~~~~~~~~id~l   66 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGR------------KQAIADVLAKCSKGMDGL   66 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHH------------HHHHHHHHTTCTTCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCC------------HHHHHHHHHHhCCCCCEE
Confidence            35689999999999999999999998  999999876211   1112211            11222233    456999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      |..||..... ..-.+.+..|+.-...+++.+.++.   ..+.||++|
T Consensus        67 v~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~is  113 (257)
T 1fjh_A           67 VLCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVIS  113 (257)
T ss_dssp             EECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred             EECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEEC
Confidence            9999976422 2234455666555444444444322   235555554

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.71  E-value=0.0047  Score=57.61  Aligned_cols=115  Identities=19%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHHhh-------cCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELASA-------LKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~~a-------l~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........  ..+++...+.++.       +.+
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35788999999999999999999998  999999986  2222223322111100  0111111122222       238


Q ss_pred             CcEEEEcCCCCC--CC--CCch---hhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPR--KP--GMTR---DDLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~--k~--g~~r---~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||...  .+  ..+.   .+.+..|+.-.    +.+.+.+.+. ..+.||++|
T Consensus        92 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~is  150 (260)
T 2zat_A           92 VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVS  150 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence            999999999743  11  1222   23344555444    4444444433 345555554

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.71  E-value=0.0017  Score=60.58  Aligned_cols=116  Identities=20%  Similarity=0.278  Sum_probs=67.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~  160 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|. +.  ......++........ + .+++...+.++.+       .
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999998  9999998 43  2222222322111100 0 1121112222233       3


Q ss_pred             CCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +.|+||..+|.....   ..+.   .+.+..|+.-...+.+.+.++. .++.||+++
T Consensus        99 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s  155 (274)
T 1ja9_A           99 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  155 (274)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence            899999999875321   1122   2345567666666666665554 235565554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.69  E-value=0.0047  Score=57.80  Aligned_cols=78  Identities=22%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.+       +.+.+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999998  999999986  2222233322111100 0 1111111111       12348


Q ss_pred             CcEEEEcCCCC
Q 015172          162 VNVVVIPAGVP  172 (412)
Q Consensus       162 aDiVIiaag~p  172 (412)
                      .|+||..||..
T Consensus        85 id~lv~nAg~~   95 (262)
T 1zem_A           85 IDFLFNNAGYQ   95 (262)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999999875

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.69  E-value=0.0045  Score=57.07  Aligned_cols=115  Identities=23%  Similarity=0.260  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh------cCCCcE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA------LKGVNV  164 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a------l~~aDi  164 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++..........+++-..+.++.      +.+.|+
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            35799999999999999999999998  9999999762  2222222110000000011111122222      358999


Q ss_pred             EEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ||..||.....   ..+.   .+.+..|+.-    .+.+.+.+.+.. .+.|++++
T Consensus        89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~is  143 (254)
T 2wsb_A           89 LVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLG  143 (254)
T ss_dssp             EEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEe
Confidence            99999975421   1121   2334455544    444555554443 45555554

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.68  E-value=0.008  Score=55.10  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhc---CCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASAL---KGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al---~~aDiVIi  167 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+..  .....++.  .......+++-..+.++.+   ...|+||.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP--GIEPVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST--TCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC--CCCEEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence            36799999999999999999999998  9999998752  11111111  1000001221112233333   36899999


Q ss_pred             cCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPG---MT---RDDLFNINANIVKTLVEA----VADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g---~~---r~dl~~~N~~i~~~i~~~----i~~~~p~aiviv~T  210 (412)
                      .||......   .+   ....+..|+.-...+.+.    +.+....+.|+++|
T Consensus        83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~s  135 (244)
T 3d3w_A           83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS  135 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence            998754211   11   123445565544444444    43333245565555

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.68  E-value=0.0036  Score=58.72  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=50.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHHhh-------c
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELASA-------L  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------l  159 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++...... .+.    +++...+.++.       +
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLGSG-KVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTSSS-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCC-cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35788889999999999999999998  999999986  23333344332211 111    22111122222       3


Q ss_pred             CCCcEEEEcCCCCC
Q 015172          160 KGVNVVVIPAGVPR  173 (412)
Q Consensus       160 ~~aDiVIiaag~p~  173 (412)
                      ...|++|..||...
T Consensus        87 g~id~lvnnAg~~~  100 (262)
T 3pk0_A           87 GGIDVVCANAGVFP  100 (262)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            38999999999753

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.68  E-value=0.0024  Score=59.78  Aligned_cols=116  Identities=16%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcH-------HhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEEL-------ASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~-------~~al~~aD  163 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++.  .....++... ......+++...+.       .+.+...|
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGPR-VHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-EEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-ceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            35789999999999999999999998  9999999862  2222222110 00000011111111       12345889


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          164 VVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      ++|..||......   .+.   ...+..|+.-...+.+.+.++. ..+.||+++-
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           85 LLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            9999999764221   122   2345667766666777766654 3566666653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.67  E-value=0.0018  Score=60.99  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (278)
T 1spx_A            7 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHA   40 (278)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5788889999999999999999998  999999986

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.67  E-value=0.0053  Score=58.88  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=46.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEE-EecCchhhhhhhhcccC-CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHL-YDVMNVKGVAADLSHCN-TPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L-~Di~~~~g~~~dL~~~~-~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++||+|+||+|.||..++..+...+-. +|+- +|.+.....-.|+.+.. ...   .+..++|+++.++++|+||...
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~---gv~v~~dl~~ll~~~DVVIDfT   81 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQT---GVALTDDIERVCAEADYLIDFT   81 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCC---SCBCBCCHHHHHHHCSEEEECS
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCC---CceecCCHHHHhcCCCEEEEcC
Confidence            589999997799999999888766422 5554 68764111112222211 111   2223578888889999999873

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.66  E-value=0.0034  Score=58.85  Aligned_cols=115  Identities=15%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhccc-CCCCce-eeecCCCcHHhhc-------CC
Q 015172           94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHC-NTPSQV-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~-~~~~~v-~~i~~t~d~~~al-------~~  161 (412)
                      ++|.|+||+  |.+|..++..|+..|.  +|++.|.+. ......++... .....+ .+++-..+.++.+       ..
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468899998  8999999999999998  999999875 11222222211 000001 1221111222222       37


Q ss_pred             CcEEEEcCCCCCC-----C--C-Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-----P--G-MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-----~--g-~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .|+||..||....     +  . .+.   ...+..|+.-...+++.+.++. +.+.||++|
T Consensus        88 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (265)
T 1qsg_A           88 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS  148 (265)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence            8999999997542     1  1 222   2345667777777777776654 345666665

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.65  E-value=0.011  Score=55.94  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .+.+.|+||+|.+|..++..|+..|.  .|++.|++
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~   44 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDIC   44 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEecc
Confidence            35788999999999999999999998  99999986

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=96.65  E-value=0.0026  Score=67.85  Aligned_cols=113  Identities=14%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCc-HHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEE-LASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d-~~~al~~aDiVIia  168 (412)
                      .+|+|.|+||+|++|+.++..|+.. |.  +|+++|.+....  .++... .......+++...+ ++++++++|+||.+
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~  389 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL  389 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEEC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEEC
Confidence            4578999999999999999999987 77  999999875211  111111 00000112211111 44467799999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+....+.  .+..+.+..|+.....+++.+.+..  ..|+.+|
T Consensus       390 Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~S  431 (660)
T 1z7e_A          390 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPS  431 (660)
T ss_dssp             CCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEC
T ss_pred             ceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEe
Confidence            88653211  1234456678888888888887765  4454444

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.64  E-value=0.006  Score=56.93  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------c-C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------L-K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l-~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.......  ...+++...+.++.       + .
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999998  999999986  222222332211100  00111111122222       2 5


Q ss_pred             CCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHH----HhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAV----ADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~p~aiviv~T  210 (412)
                      ..|+||..||.....   ..+.   ...+..|+.-...+.+.+    .+. ..+.||++|
T Consensus        87 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is  145 (260)
T 2ae2_A           87 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFIS  145 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            799999999975321   1222   223445654444444443    332 345565554

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.64  E-value=0.0073  Score=57.13  Aligned_cols=115  Identities=20%  Similarity=0.196  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~a  162 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++........ + .+++-..+.++       .+.+.
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999998  999999986  2222223322111100 0 11111112222       23479


Q ss_pred             cEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhh--C---CCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADN--C---PDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~--~---p~aiviv~T  210 (412)
                      |+||..||......   .+.   ...+..|+.-...+++.+.+.  .   ..+.||+++
T Consensus       101 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~is  159 (277)
T 2rhc_B          101 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  159 (277)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEEC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEEC
Confidence            99999999754211   121   234556666555555554443  1   235565654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.63  E-value=0.0028  Score=58.89  Aligned_cols=115  Identities=14%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|. +.  ......++........ + .+++...+.++.+       .+
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999998  9999998 54  2222222322111000 0 1111111222222       38


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||.....   ..+.   .+.+..|+.-    .+.+.+.+.+..+.+.||++|
T Consensus        86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~is  144 (261)
T 1gee_A           86 LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMS  144 (261)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            99999999875321   1222   2234455443    344444444433245555554

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.63  E-value=0.0066  Score=57.66  Aligned_cols=114  Identities=21%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.. .......+++-..+.+       +.+...|
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-GAAACRVDVSDEQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-SCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-cceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35688889999999999999999998  999999986  2222222311 1000001111111111       2234789


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.... +  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus       106 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~is  161 (277)
T 3gvc_A          106 KLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLS  161 (277)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            99999997532 1  2222   2334556554    44444444433 356565554

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.63  E-value=0.0056  Score=57.50  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|. +.
T Consensus        12 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   46 (276)
T 1mxh_A           12 PAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSE   46 (276)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCh
Confidence            5788999999999999999999998  9999999 65

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.62  E-value=0.0062  Score=56.70  Aligned_cols=115  Identities=15%  Similarity=0.097  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHHhhc--------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELASAL--------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~~al--------~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........  ..+++-..+.++.+        .
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999998  999999976  2222222322111100  01111111222222        6


Q ss_pred             CCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHH----HhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAV----ADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i----~~~~p~aiviv~T  210 (412)
                      +.|+||..||.....   ..+.   ...+..|+.-...+.+.+    .+.. .+.||++|
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~is  150 (266)
T 1xq1_A           92 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS  150 (266)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            789999999875321   1122   233555665444444444    4433 34454554

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.62  E-value=0.0068  Score=56.18  Aligned_cols=112  Identities=21%  Similarity=0.236  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDi  164 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++   .......+++...+.++       .+...|+
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAV---GAHPVVMDVADPASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---TCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc---CCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999998  9999999762  2112111   10000011111111222       2346899


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          165 VVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ||..||......   .+.   ...+..|+.-...+++.+.++.   ..+.|+++|
T Consensus        81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~is  135 (245)
T 1uls_A           81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTA  135 (245)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            999999754211   121   2345566655555555444432   345665554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.61  E-value=0.0041  Score=60.70  Aligned_cols=87  Identities=17%  Similarity=0.273  Sum_probs=56.2

Q ss_pred             HhhhhhhhhhhccCCC-CCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceee
Q 015172           70 RSTFARKAQSSEQRPQ-YALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLD  148 (412)
Q Consensus        70 ~~~f~~~~~~~~~~~~-~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~  148 (412)
                      |++....++.+++.-. .....-..++|+|||. |.||..+|..+...|.  +|+.+|.+.....+.   ...    .. 
T Consensus       118 R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~---~~g----~~-  186 (313)
T 2ekl_A          118 RKMYTSMALAKSGIFKKIEGLELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAE---KIN----AK-  186 (313)
T ss_dssp             HTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---HTT----CE-
T ss_pred             hCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHH---hcC----ce-
Confidence            6655444444433211 1112234579999998 9999999999998898  999999876322111   111    11 


Q ss_pred             ecCCCcHHhhcCCCcEEEEcCC
Q 015172          149 FTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus       149 i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .   .++++.+++||+|+++..
T Consensus       187 ~---~~l~ell~~aDvVvl~~P  205 (313)
T 2ekl_A          187 A---VSLEELLKNSDVISLHVT  205 (313)
T ss_dssp             E---CCHHHHHHHCSEEEECCC
T ss_pred             e---cCHHHHHhhCCEEEEecc
Confidence            1   256678899999999853

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.61  E-value=0.0075  Score=57.01  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-Ccee----eecCCCcHHhh-------
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVL----DFTGPEELASA-------  158 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~----~i~~t~d~~~a-------  158 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++...... ..+.    +++-..+.++.       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999998  999999986  23333334332110 0111    12111122222       


Q ss_pred             cCCCcEEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHhh---CCCeEEEEEc
Q 015172          159 LKGVNVVVIPAGVPRKPG----MTR---DDLFNINANIVKTLVEAVADN---CPDAFIHIIS  210 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g----~~r---~dl~~~N~~i~~~i~~~i~~~---~p~aiviv~T  210 (412)
                      +...|++|..||.....+    .+.   ...+..|+.-...+++.+.++   ...+.||++|
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is  150 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGIS  150 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            236799999999632221    222   234455665444444443332   2355665554

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.61  E-value=0.0038  Score=58.07  Aligned_cols=116  Identities=16%  Similarity=0.291  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++.... .....+++...+.++       .+...|
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~id   85 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGDAA-LAVAADISKEADVDAAVEAALSKFGKVD   85 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTE-EEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCce-EEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            36799999999999999999999998  9999999862  22222221110 000011111112222       234789


Q ss_pred             EEEEcCCCCCCCC----Cchh---hHHHhhH----HHHHHHHHHHHhhC---CCeEEEEEcC
Q 015172          164 VVVIPAGVPRKPG----MTRD---DLFNINA----NIVKTLVEAVADNC---PDAFIHIISN  211 (412)
Q Consensus       164 iVIiaag~p~k~g----~~r~---dl~~~N~----~i~~~i~~~i~~~~---p~aiviv~TN  211 (412)
                      ++|..||....++    .+..   ..+..|+    .+.+.+.+.+.+..   ..+.|++++-
T Consensus        86 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS  147 (261)
T 3n74_A           86 ILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAS  147 (261)
T ss_dssp             EEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCc
Confidence            9999999754222    1222   2234443    34555555555442   2455666553

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.61  E-value=0.0071  Score=57.29  Aligned_cols=115  Identities=16%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..  ...+++-..+.++       .+.+
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGELSAR  105 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            35799999999999999999999998  999999986  222223332211 10  0011111111222       2347


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCC---CeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCP---DAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p---~aiviv~T  210 (412)
                      .|+||..||.....   ..+.   ...+..|+.-    .+.+.+.+.+...   .+.||+++
T Consensus       106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~is  167 (276)
T 2b4q_A          106 LDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIG  167 (276)
T ss_dssp             CSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            99999999975321   1121   2334455443    3555555554432   15666654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.60  E-value=0.0053  Score=57.37  Aligned_cols=115  Identities=20%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.+...... + .+++-..+.++       .+..
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35788999999999999999999998  899999986  2222333332211100 0 11111112222       2348


Q ss_pred             CcEEEEcCCCCCCC--CCchh---hHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP--GMTRD---DLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~--g~~r~---dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||.....  ..+..   ..+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus        90 id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~is  146 (256)
T 3gaf_A           90 ITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNIS  146 (256)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            99999999975421  22222   234455443    44444444433 345666654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.60  E-value=0.0033  Score=58.02  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.++  ......++........ + .+++...+.++       .+..
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35788999999999999999999998  999999986  2222223322211100 0 01111111221       2336


Q ss_pred             CcEEEEcCCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.|++++
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~is  140 (247)
T 3lyl_A           83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIG  140 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEc
Confidence            899999999764221   122   2234455443    34444444433 345565554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.59  E-value=0.005  Score=57.20  Aligned_cols=113  Identities=16%  Similarity=0.227  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~a  162 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+.++       .+.+.
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999998  999999986  2222233322111100 0 11111111221       23489


Q ss_pred             cEEEEcCCCCCCC---CCchh---hHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKP---GMTRD---DLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~---g~~r~---dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.....   ..+..   ..+..|+.-    .+.+.+.+.+..  +.||++|
T Consensus        86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~is  141 (247)
T 2jah_A           86 DILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMS  141 (247)
T ss_dssp             SEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC
T ss_pred             CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEc
Confidence            9999999975321   12222   234455543    344444444333  5555554

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.59  E-value=0.0056  Score=63.36  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=44.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC------CCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS------PLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~------gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      +||+|||. |.||.++|..|...      |+  +|++.+...  ....+.+.   ...  ...- ...+.++++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~---G~~--v~d~-ta~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAA---GFT--EESG-TLGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHT---TCC--TTTT-CEEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHC---CCE--EecC-CCCCHHHHHhcCCEE
Confidence            79999998 99999999999988      87  777665543  12122111   110  0000 013567789999999


Q ss_pred             EEcC
Q 015172          166 VIPA  169 (412)
Q Consensus       166 Iiaa  169 (412)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9994

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.59  E-value=0.0039  Score=59.33  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhc---CCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASAL---KGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al---~~aDiVIi  167 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++. ........+++...+.++.+   ...|++|.
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~   92 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTMA-GQVEVRELDLQDLSSVRRFADGVSGADVLIN   92 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTSS-SEEEEEECCTTCHHHHHHHHHTCCCEEEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-CCeeEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            46799999999999999999999998  9999999862  22222221 00000001121112222223   36799999


Q ss_pred             cCCCCCCCC----CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPG----MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g----~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||....+.    ..-...+..|+.-...+++.+.++...- ||++|
T Consensus        93 nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~r-iv~is  138 (291)
T 3rd5_A           93 NAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDR-VVTVS  138 (291)
T ss_dssp             CCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEE-EEEEC
T ss_pred             CCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-eeEee
Confidence            999753221    1223456778777777888777665443 44443

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.59  E-value=0.0033  Score=61.18  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||+ |.||..++..++.. + ..+|.++|++..  ...+.++..     .+.   ...+++++++++|+||++.
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~~l~~~~~~-----~~~---~~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENAEKFADTVQG-----EVR---VCSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHHHHHHHHSSS-----CCE---ECSSHHHHHTTCSEEEECC
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHhhC-----CeE---EeCCHHHHHhcCCEEEEEe
Confidence            579999998 99999999888765 6 358999999862  222222211     121   2357778899999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.58  E-value=0.00075  Score=66.53  Aligned_cols=65  Identities=20%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+.......++   .    .. .   .++++.+++||+|+++..
T Consensus       145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          145 YGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL---K----AR-Y---MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH---T----EE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----ce-e---cCHHHHHhhCCEEEEcCC
Confidence            4579999998 9999999999988898  99999997632211111   1    11 1   257677899999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.57  E-value=0.0014  Score=61.52  Aligned_cols=33  Identities=9%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      +.|||+|||+ |.||.+++..|...|+  +|+++|.
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~--~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSVGH--YVTVLHA   37 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHTTC--EEEECSS
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHCCC--EEEEecC
Confidence            3589999998 9999999999999998  9999987

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.57  E-value=0.0044  Score=58.58  Aligned_cols=114  Identities=20%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHH-------hhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELA-------SALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~-------~al~~a  162 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|++.  ......++.......  ...+++...+.+       +.+...
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688889999999999999999998  999999986  233333333221110  001121111222       223489


Q ss_pred             cEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||......   .+.   ...+..|+.    +.+.+.+.+.+. ..+.||+++
T Consensus        83 D~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~is  139 (264)
T 3tfo_A           83 DVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIG  139 (264)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEc
Confidence            99999999753221   122   223445544    344455555443 345555554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.57  E-value=0.0038  Score=58.07  Aligned_cols=114  Identities=21%  Similarity=0.325  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aD  163 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++  ......++..... ....+++...+.++       .+...|
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~Dv~d~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNGK-GMALNVTNPESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEE-EEECCTTCHHHHHHHHHHHHHHHCCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccce-EEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            35788889999999999999999998  999999986  2222222222110 00001111112222       234899


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||......   .+.   ...+..|+.    +.+.+.+.+.+. ..+.||+++
T Consensus        86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~is  141 (248)
T 3op4_A           86 ILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVG  141 (248)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence            9999999754221   122   223445544    344444444433 345555554

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.57  E-value=0.0062  Score=57.64  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+..   .....++........ + .+++...+.+       +.+.
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35788889999999999999999998  9999998752   112222322111100 0 0111111111       2235


Q ss_pred             CCcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MT---RDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +.|+||..||......   .+   -...+..|+.-...+++.+.++. ..+.||+++
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            7899999999753211   12   23346677776666777776664 445665554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.57  E-value=0.0046  Score=57.63  Aligned_cols=119  Identities=16%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             CCCCceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccC--CCCceeeecCCCcHHh-------
Q 015172           90 PQASFKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCN--TPSQVLDFTGPEELAS-------  157 (412)
Q Consensus        90 ~~~~~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~--~~~~v~~i~~t~d~~~-------  157 (412)
                      ..+.++|.|+||+  |.+|..++..|+..|.  .|++.|.+. ......++....  ......+++-..+.++       
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            3456789999998  8999999999999998  999999875 222222222111  0000011211112222       


Q ss_pred             hcCCCcEEEEcCCCCCC-----C--C-Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          158 ALKGVNVVVIPAGVPRK-----P--G-MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       158 al~~aDiVIiaag~p~k-----~--g-~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .+...|++|..||....     +  . .+.   ...+..|+.-...+.+.+.++. +.+.|++++
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence            23477999999997542     1  1 222   2345566665666666666554 455666655

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.56  E-value=0.0057  Score=57.54  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~  160 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++........ + .+++...+.++       .+.
T Consensus        18 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           18 GKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35788889999999999999999998  999988764   2222233332211100 0 11211112222       234


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      ..|++|..||......   .+.   ...+..|+.-...+.+.+.++. ..+.||+++-
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            7899999999753221   122   2345667666666677666665 4555555543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.56  E-value=0.012  Score=55.65  Aligned_cols=116  Identities=21%  Similarity=0.249  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-------------c--hhhhhhhhcccCCCCc--eeeecCCCcH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-------------N--VKGVAADLSHCNTPSQ--VLDFTGPEEL  155 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-------------~--~~g~~~dL~~~~~~~~--v~~i~~t~d~  155 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++             .  ......++........  ..+++...+.
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            35788999999999999999999998  99999983             2  1222222222211100  0122111122


Q ss_pred             Hh-------hcCCCcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          156 AS-------ALKGVNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       156 ~~-------al~~aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++       .+...|++|..||......   .+..   ..+..|+.    +.+.+.+.+.+....+.||+++
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  164 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVS  164 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            22       2348999999999754211   1222   23444543    4555555555554466666665

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.55  E-value=0.0053  Score=58.29  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+..  .....++.. .......+++-..+.+       +.+...|
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGS-KAFGVRVDVSSAKDAESMVEKTTAKWGRVD  103 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35788999999999999999999998  9999999862  222222211 0000001111111222       2234899


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ++|..||.... +  ..+.   ...+..|+.-...+.+.+.++.   ..+.||+++
T Consensus       104 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is  159 (277)
T 4dqx_A          104 VLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTT  159 (277)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence            99999997532 1  1222   2234456544444444443322   345665554

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.55  E-value=0.0021  Score=59.95  Aligned_cols=111  Identities=15%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh----hhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV----AADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~----~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.....    ..|+.+.   ..+....  .+..+.+...|+||..
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~---~~v~~~~--~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGE---EEIKSVI--EKINSKSIKVDTFVCA   94 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSH---HHHHHHH--HHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCH---HHHHHHH--HHHHHHcCCCCEEEEC
Confidence            35788999999999999999999998  8999999862111    0111110   0011000  1112234567999999


Q ss_pred             CCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          169 AGVPRKP----GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~----g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ||.....    ..+.   ...+..|+.-...+.+.+.++. +++.||++|
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTG  144 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEe
Confidence            9874321    1221   2345567666666666666554 456666665

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.55  E-value=0.013  Score=55.77  Aligned_cols=114  Identities=18%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~a  162 (412)
                      +.|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........ + .+++-..+.+       +.+...
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL  106 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999999998  999999986  2333333433211100 0 1111111122       223489


Q ss_pred             cEEEEcCCCCC--CC--CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPR--KP--GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~--k~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||...  .+  ..+..   ..+..|+.    +.+.+.+.+.+. ..+.||++|
T Consensus       107 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~is  164 (283)
T 3v8b_A          107 DIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVS  164 (283)
T ss_dssp             CEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEc
Confidence            99999999743  22  22222   23455544    444444444544 345555554

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.55  E-value=0.0055  Score=58.06  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDi  164 (412)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.. .......+++...+.++       .+...|+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-DALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-CCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-CeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4677889999999999999999998  999999986  2222222221 10000011211112222       2348999


Q ss_pred             EEEcCCCCCC--C--CCch---hhHHHhhHHH----HHHHHHHHHhhC-CCeEEEEEcC
Q 015172          165 VVIPAGVPRK--P--GMTR---DDLFNINANI----VKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       165 VIiaag~p~k--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      +|..||....  +  ..+.   .+.+..|+.-    .+.+.+.+.+.. +.+.||+++-
T Consensus       106 lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  164 (272)
T 4dyv_A          106 LFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS  164 (272)
T ss_dssp             EEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             EEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence            9999997432  2  1222   2334555443    555556665544 2566666653

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.53  E-value=0.0032  Score=60.00  Aligned_cols=69  Identities=20%  Similarity=0.304  Sum_probs=49.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||+|||+ |.||..++..|...|.  +|.++|++..+..  ++.+.. .  .. .  ..++++.++++|+||.+...+
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~~~--~l~~~~-g--~~-~--~~~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEKAI--KLAQKF-P--LE-V--VNSPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHHHH--HHTTTS-C--EE-E--CSCGGGTGGGCSEEEECSSTT
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHHHH--HHHHHc-C--Ce-e--ehhHHhhhcCCCEEEEeCCCC
Confidence            479999998 9999999999999897  9999999863221  222110 1  21 1  225666789999999997554

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.52  E-value=0.011  Score=56.54  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHH-------hhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELA-------SAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~-------~al  159 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.    .......+.......  ...+++-..+.+       +.+
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999998  999999873    111111222211110  001111111111       223


Q ss_pred             CCCcEEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPG----MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g----~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ...|++|..||.....+    .+.   ...+..|+.-...+.+.+.++. ..+.||+++
T Consensus       127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            58999999999753211    222   3346677777777777777766 456666654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.52  E-value=0.0038  Score=57.19  Aligned_cols=115  Identities=21%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++. +.+.  ......++.......  ...+++...+.++.       +.+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999999999999999999998  88884 6654  222222222111000  00111111122222       237


Q ss_pred             CcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhh---CCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADN---CPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~---~p~aiviv~T  210 (412)
                      .|+||..||......   .+.   ...+..|+.-...+.+.+.++   ...+.||++|
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  137 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA  137 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999999999764321   121   233455655444444444332   1345565554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.52  E-value=0.0037  Score=59.10  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (280)
T 1xkq_A            7 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSS   40 (280)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5788889999999999999999998  999999986

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.52  E-value=0.0058  Score=57.90  Aligned_cols=115  Identities=18%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-CCCCceeeecCCCcHHhhc-------CCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-NTPSQVLDFTGPEELASAL-------KGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al-------~~aD  163 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++... .......+++...+.++.+       ...|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4688889999999999999999998  999999986  22222223221 0000001111111222223       3569


Q ss_pred             EEEEcCCCCCC--C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK--P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k--~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||....  +  ..+.   ...+..|+.-    .+.+.+.+.+......||+++
T Consensus       100 ~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~is  157 (272)
T 2nwq_A          100 GLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLG  157 (272)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            99999997532  2  1222   2234445443    555555555544341454554

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=96.51  E-value=0.0039  Score=64.21  Aligned_cols=105  Identities=10%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-----hhhhhccc-------CCCCceee----ecCCCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-----VAADLSHC-------NTPSQVLD----FTGPEE  154 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-----~~~dL~~~-------~~~~~v~~----i~~t~d  154 (412)
                      ..+++|.|+||+|++|..++..|...|.  +|++++++....     ....+...       .....+..    +.-..+
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  225 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  225 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSS
T ss_pred             CCCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCccccc
Confidence            3468999999999999999999977777  999999875211     11111100       00111221    211122


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh
Q 015172          155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       155 ~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~  199 (412)
                      +. .+.++|+||.+|+... ...+..++...|+...+.+++.+.+
T Consensus       226 l~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~  268 (508)
T 4f6l_B          226 VV-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ  268 (508)
T ss_dssp             CC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT
T ss_pred             CC-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh
Confidence            22 5689999999988653 2223445567799999999998887

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.51  E-value=0.0043  Score=59.51  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   60 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNE   60 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5788889999999999999999998  999999986

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.51  E-value=0.0031  Score=62.57  Aligned_cols=64  Identities=20%  Similarity=0.384  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||..........    .    .. +  ..++++.+++||+|+++.
T Consensus       172 ~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~----g----~~-~--~~~l~ell~~sDvV~l~~  235 (345)
T 4g2n_A          172 TGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALEE----G----AI-Y--HDTLDSLLGASDIFLIAA  235 (345)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHT----T----CE-E--CSSHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhhc----C----Ce-E--eCCHHHHHhhCCEEEEec
Confidence            3579999998 9999999999998888  9999998752111111    1    11 1  246778899999999985

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.51  E-value=0.012  Score=56.33  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .+.+.|+||+|.+|..+|..|+..|.  .|++.|++
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~   61 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVC   61 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecc
Confidence            35788889999999999999999998  99999986

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.51  E-value=0.0096  Score=56.08  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hc-C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------AL-K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al-~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.......  ...+++-..+.++       .+ .
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  999999986  222222332211110  0011111112222       23 5


Q ss_pred             CCcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus        99 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~is  157 (273)
T 1ae1_A           99 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLS  157 (273)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence            799999999975321   1222   2233455443    34444444433 345565655

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.51  E-value=0.0051  Score=58.16  Aligned_cols=115  Identities=19%  Similarity=0.293  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~  161 (412)
                      .+.|.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.......  ...+++...+.++       .+..
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            35677889999999999999999998  999999986  222223332221110  0011211112222       2348


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus       106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~is  163 (270)
T 3ftp_A          106 LNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNIT  163 (270)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEC
Confidence            99999999975421   1222   2234556544    34444444333 346565554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.50  E-value=0.0077  Score=57.08  Aligned_cols=115  Identities=18%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHHh-------hcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELAS-------ALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~~-------al~~a  162 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........  ..+++-..+.++       .+...
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPI  102 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999999999999999999998  999999986  2333333432211100  011211111221       23478


Q ss_pred             cEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhh-----CCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADN-----CPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~-----~p~aiviv~T  210 (412)
                      |++|..||......   .+.   .+.+..|+.-...+++.+.+.     ...+.||+++
T Consensus       103 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~is  161 (279)
T 3sju_A          103 GILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIA  161 (279)
T ss_dssp             CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEEC
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEEC
Confidence            99999999754211   122   233456655544455544331     2345565654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.50  E-value=0.0095  Score=55.49  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh-hhhhcccCCCCceeeecCCCcHHh-------hcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV-AADLSHCNTPSQVLDFTGPEELAS-------ALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~-~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDiV  165 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+..... ..++..   .....+++...+.++       .+...|+|
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   81 (256)
T 2d1y_A            7 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG---AFFQVDLEDERERVRFVEEAAYALGRVDVL   81 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC---EEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC---CEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999998  9999999763211 112210   000001111111222       23478999


Q ss_pred             EEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhh---CCCeEEEEEc
Q 015172          166 VIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADN---CPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~---~p~aiviv~T  210 (412)
                      |..||.....   ..+.   ...+..|+.-...+.+.+.++   ...+.||+++
T Consensus        82 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~is  135 (256)
T 2d1y_A           82 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA  135 (256)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence            9999975321   1222   234556655444444444332   2345665654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.50  E-value=0.0018  Score=63.64  Aligned_cols=64  Identities=19%  Similarity=0.172  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.+.....  .+     .. .  + ...++++.+++||+|+++.
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--~~-----~~-~--~-~~~~l~ell~~aDvV~l~l  199 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD--HF-----HE-T--V-AFTATADALATANFIVNAL  199 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT--TC-----SE-E--E-EGGGCHHHHHHCSEEEECC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH--hH-----hh-c--c-ccCCHHHHHhhCCEEEEcC
Confidence            3579999998 9999999999998898  9999998742100  00     00 1  1 1245677899999999985

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.49  E-value=0.0078  Score=56.64  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ ++|.|+|.+.
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            58999998 9999999999999995 6999999985

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.49  E-value=0.01  Score=56.25  Aligned_cols=115  Identities=23%  Similarity=0.290  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........ + .+++-..+.++       .+.+
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999997  999998765  2222223322111100 0 11111112222       2357


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||.....   ..+.   .+.+..|+.-    .+.+.+.+.+.. .+.||++|
T Consensus       122 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~is  179 (285)
T 2c07_A          122 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINIS  179 (285)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEC
Confidence            99999999975321   1222   2334455544    444444444333 35555554

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.007  Score=57.44  Aligned_cols=116  Identities=18%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCCcHHhhc-------C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPEELASAL-------K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al-------~  160 (412)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++.......  ...+++-..+.++.+       .
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35688999999999999999999998  999999743   222223333221110  001222222233223       3


Q ss_pred             CCcEEEEcCCCC---CCC--CCchh---hHHHhhHH----HHHHHHHHHHhhC--CCeEEEEEc
Q 015172          161 GVNVVVIPAGVP---RKP--GMTRD---DLFNINAN----IVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p---~k~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      ..|++|..||..   ..+  ..+..   ..+..|+.    +.+.+.+.+.+..  +.+.||+++
T Consensus       107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~is  170 (280)
T 4da9_A          107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINIT  170 (280)
T ss_dssp             CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred             CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence            899999999973   122  11222   22334543    4455555555543  255666655

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.48  E-value=0.006  Score=57.34  Aligned_cols=110  Identities=19%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-----hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-----VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-----~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++...+     ...|+.+..   .+....  ....+.+.+.|+||..
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~---~v~~~~--~~~~~~~g~iD~lv~~   81 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPD---QVKASI--DHIFKEYGSISVLVNN   81 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHH---HHHHHH--HHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHH---HHHHHH--HHHHHHcCCCCEEEEC
Confidence            5799999999999999999999998  999999875221     001111100   000000  0111223479999999


Q ss_pred             CCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          169 AGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ||.....   ..+.   ...+..|+.-...+++.+.++.   ..+.||++|
T Consensus        82 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~is  132 (264)
T 2dtx_A           82 AGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNIS  132 (264)
T ss_dssp             CCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence            9975321   1222   2334556554444444443332   235555554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.48  E-value=0.0035  Score=58.64  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCC-ce-eeecCCCcHHhhc-------CC
Q 015172           94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPS-QV-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~-~v-~~i~~t~d~~~al-------~~  161 (412)
                      ++|.|+||+  |.+|..++..|+..|.  +|++.|.+.. .....++....... .+ .+++-..+.++.+       .+
T Consensus         9 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            9 KKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             CEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            579999998  8999999999999998  9999998752 11222232210000 00 1221111222222       37


Q ss_pred             CcEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-----P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .|+||..||....     +  ..+.   ...+..|+.-...+.+.+.++. ..+.||++|
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  146 (261)
T 2wyu_A           87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (261)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            8999999997542     1  1222   2345667766666777666543 235666665

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.48  E-value=0.0035  Score=59.15  Aligned_cols=114  Identities=24%  Similarity=0.358  Sum_probs=64.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+..  .....++.. .......+++...+.+       +.+...|
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLGK-DVFVFSANLSDRKSIKQLAEVAEREMEGID  103 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-SEEEEECCTTSHHHHHHHHHHHHHHHTSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-ceEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            35788889999999999999999998  9999999862  222222211 0000001111111121       2234899


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus       104 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~is  159 (266)
T 3grp_A          104 ILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINIT  159 (266)
T ss_dssp             EEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            999999975421   1221   2234456554    555555555443 45555554

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.47  E-value=0.01  Score=55.53  Aligned_cols=112  Identities=20%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh-----hhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV-----AADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~-----~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.....     ..|+.+.   ..+....  ....+.+...|++|.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~---~~v~~~~--~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDT---EQVEQAY--KEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSH---HHHHHHH--HHHHHHTCSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCH---HHHHHHH--HHHHHHcCCCCEEEE
Confidence            35799999999999999999999998  9999998752110     0111110   0010000  011223456799999


Q ss_pred             cCCCCCCC------CCchhhHHHhhHHHHHHHH----HHHHhhCCCeEEEEEcCC
Q 015172          168 PAGVPRKP------GMTRDDLFNINANIVKTLV----EAVADNCPDAFIHIISNP  212 (412)
Q Consensus       168 aag~p~k~------g~~r~dl~~~N~~i~~~i~----~~i~~~~p~aiviv~TNP  212 (412)
                      .||.....      .......+..|+.-...++    +.+.+. ..+.||+++-.
T Consensus        94 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  147 (253)
T 2nm0_A           94 NAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSV  147 (253)
T ss_dssp             ECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECch
Confidence            99875321      1123344556665444444    444333 34556566533

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.47  E-value=0.0061  Score=58.22  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.  ....+.++... .......+++...+.++.++++|+||.++
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            46899999779999999999999997  799999985  22223333221 11111112222234556788999999998


Q ss_pred             CCC
Q 015172          170 GVP  172 (412)
Q Consensus       170 g~p  172 (412)
                      |..
T Consensus       197 g~g  199 (287)
T 1lu9_A          197 AIG  199 (287)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            754

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.46  E-value=0.0057  Score=55.74  Aligned_cols=96  Identities=24%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc------CCCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL------KGVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~aDiVIi  167 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+.. .  .++...     ..+++-..+.++.+      .+.|+||.
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~--~~~~~~-----~~D~~~~~~~~~~~~~~~~~~~~d~li~   72 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-G--EDLIYV-----EGDVTREEDVRRAVARAQEEAPLFAVVS   72 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-S--SSSEEE-----ECCTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-c--cceEEE-----eCCCCCHHHHHHHHHHHHhhCCceEEEE
Confidence            5799999999999999999999998  9999998753 1  111000     00111111222223      38899999


Q ss_pred             cCCCCCCCC---C-------chhhHHHhhHHHHHHHHHHHHh
Q 015172          168 PAGVPRKPG---M-------TRDDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       168 aag~p~k~g---~-------~r~dl~~~N~~i~~~i~~~i~~  199 (412)
                      .+|......   .       ...+.+..|+.-...+.+.+.+
T Consensus        73 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  114 (242)
T 1uay_A           73 AAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAW  114 (242)
T ss_dssp             CCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence            998754221   1       1223445565555555554443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.46  E-value=0.013  Score=54.83  Aligned_cols=69  Identities=13%  Similarity=0.037  Sum_probs=47.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecC-CCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTG-PEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~-t~d~~~al~~aDiVIiaag~  171 (412)
                      +|||.|+|| |++|..++..|+..|.  +|+.++.+.....  .+....    +..+.+ -+|++  ++++|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~----~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRASG----AEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHTT----EEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhCC----CeEEEecccccc--cCCCCEEEECCCc
Confidence            579999998 9999999999999998  9999998763211  111111    111111 12332  7899999999875


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      .
T Consensus        74 ~   74 (286)
T 3ius_A           74 D   74 (286)
T ss_dssp             B
T ss_pred             c
Confidence            4

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.45  E-value=0.02  Score=52.50  Aligned_cols=35  Identities=26%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~   48 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTE   48 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCH
Confidence            46788999999999999999999998  999999986

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.44  E-value=0.0082  Score=55.50  Aligned_cols=114  Identities=21%  Similarity=0.234  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-hhhcccCCCCceeeecCCCcH---HhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-ADLSHCNTPSQVLDFTGPEEL---ASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-~dL~~~~~~~~v~~i~~t~d~---~~al~~aDiVIia  168 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++...... .++...  .....+++...+.   .+.+.+.|+||..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~id~lv~~   81 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQELEKYPGI--QTRVLDVTKKKQIDQFANEVERLDVLFNV   81 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHGGGGGSTTE--EEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhccCc--eEEEeeCCCHHHHHHHHHHhCCCCEEEEC
Confidence            35788999999999999999999998  99999997622111 121100  0000011111111   1235689999999


Q ss_pred             CCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172          169 AGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       169 ag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      ||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++-
T Consensus        82 Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS  133 (246)
T 2ag5_A           82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSS  133 (246)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence            9975421   1122   2234455443    44444444433 3455655553

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.44  E-value=0.032  Score=53.92  Aligned_cols=75  Identities=20%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .++||+|+||+|.||..++..+...+-+ +| -.+|.+.....-.|+.+...-... .+..++|+++.+.++|+||..
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~-eLvg~vd~~~~~~~G~d~gel~G~~~~-gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDV-ELCAVLVRKGSSFVDKDASILIGSDFL-GVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSE-EEEEEBCCTTCTTTTSBGGGGTTCSCC-SCBCBSCHHHHTTSCSEEEEC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCCccccccchHHhhccCcC-CceeeCCHHHHhcCCCEEEEc
Confidence            3579999997799999999888766422 44 455775311111222221100001 122357888889999999976

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.44  E-value=0.0071  Score=56.78  Aligned_cols=114  Identities=20%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             ceEEEEcC--CCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccCCCCceeeecCCCcHHhhc-------C-
Q 015172           94 FKVAVLGA--AGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCNTPSQVLDFTGPEELASAL-------K-  160 (412)
Q Consensus        94 ~KV~VIGA--aG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~~~~~v~~i~~t~d~~~al-------~-  160 (412)
                      ++|.|+||  +|.+|..++..|+..|.  +|++.|.+...   ....++. ........+++-..+.++.+       . 
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRLIQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHHHHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHhcC-CCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            56888997  79999999999999998  99999987621   1122221 11110001221111222222       2 


Q ss_pred             --CCcEEEEcCCCCCC------C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 --GVNVVVIPAGVPRK------P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 --~aDiVIiaag~p~k------~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                        ..|++|..||....      +  ..+.   ...+..|+.-...+++.+.++. +.+.||+++
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence              78999999997541      1  1222   2235567666666777766554 345565554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.44  E-value=0.011  Score=55.11  Aligned_cols=115  Identities=15%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhhc------CCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASAL------KGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al------~~a  162 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++.  ......++.......  ...+++-..+.++.+      ...
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            35788999999999999999999998  999999986  233333333221110  001121112222222      367


Q ss_pred             cEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  141 (252)
T 3h7a_A           85 EVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTG  141 (252)
T ss_dssp             EEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             eEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence            9999999975421   1222   223444543    4455555555443 45555543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.44  E-value=0.013  Score=54.48  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|++.
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   46 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA--TVILLGRNE   46 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45788999999999999999999998  999999986

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.43  E-value=0.009  Score=55.59  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDiV  165 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+... ....++......  +..+ ...+.++       .+...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~--~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQ--LKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTT--SEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCCc--EEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4688889999999999999999998  99999987621 111123221111  1101 1122222       23489999


Q ss_pred             EEcCCCC-C-CC--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVP-R-KP--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p-~-k~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..||.. . .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  131 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFIT  131 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            9999975 3 22  1122   223445544    4444445444433 34555554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.43  E-value=0.012  Score=57.11  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..|+..|.  .|++.|++.
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~   42 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQ   42 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35799999999999999999999998  999999986

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.43  E-value=0.0027  Score=61.84  Aligned_cols=65  Identities=26%  Similarity=0.369  Sum_probs=48.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.||..+|..+...|.  +|..+|.+.....+.++   .    .. .   .++++.+++||+|+++.
T Consensus       140 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          140 LEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GK-F---VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CE-E---CCHHHHHHHCSEEEECC
T ss_pred             cCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----cc-c---cCHHHHHhhCCEEEEec
Confidence            34579999998 9999999999998898  99999997633222111   1    11 1   25667889999999985

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.43  E-value=0.0065  Score=57.46  Aligned_cols=115  Identities=16%  Similarity=0.199  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~~  161 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++.......  ...+++...+.++.       +..
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            35788889999999999999999998  999999986  233333343221110  00112111122222       337


Q ss_pred             CcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||......   .+..   ..+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus       104 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~is  161 (271)
T 4ibo_A          104 VDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIG  161 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            999999999753221   2222   23455544    3344445444433 35555554

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.42  E-value=0.017  Score=54.42  Aligned_cols=116  Identities=22%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-------------c--hhhhhhhhcccCCCCc--eeeecCCCcH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-------------N--VKGVAADLSHCNTPSQ--VLDFTGPEEL  155 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-------------~--~~g~~~dL~~~~~~~~--v~~i~~t~d~  155 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++             .  ......++........  ..+++...+.
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            35788999999999999999999998  99999983             2  1112222222111100  0011111111


Q ss_pred             H-------hhcCCCcEEEEcCCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          156 A-------SALKGVNVVVIPAGVPRKPG---MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       156 ~-------~al~~aDiVIiaag~p~k~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +       +.+...|++|..||......   .+..   ..+..|+    .+.+.+.+.+.+....+.||++|
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~is  160 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILIS  160 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            1       12347999999999754321   2222   2344454    35556666666655566666665

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.42  E-value=0.0032  Score=58.08  Aligned_cols=76  Identities=20%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-c--hhhhhhhhcccCCCC--ceeeecCCCcHHhhcC-------C
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-N--VKGVAADLSHCNTPS--QVLDFTGPEELASALK-------G  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~-------~  161 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+ .  ......++.......  ...+++-..+.++.++       +
T Consensus         8 k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            8 KRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5799999999999999999999998  99999998 4  222222222211100  0011211122223333       8


Q ss_pred             CcEEEEcCCC
Q 015172          162 VNVVVIPAGV  171 (412)
Q Consensus       162 aDiVIiaag~  171 (412)
                      .|+||..||.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999986

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.42  E-value=0.0071  Score=56.58  Aligned_cols=77  Identities=22%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~  161 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........ + .+++...+..       +.+..
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35788999999999999999999998  899999986  2222333322211100 0 0111111111       22346


Q ss_pred             CcEEEEcCCC
Q 015172          162 VNVVVIPAGV  171 (412)
Q Consensus       162 aDiVIiaag~  171 (412)
                      .|+||..||.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            8999999997

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.42  E-value=0.005  Score=57.50  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhccc-CCCCc-e-eeecCCCcHHhh-------cC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHC-NTPSQ-V-LDFTGPEELASA-------LK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~-~~~~~-v-~~i~~t~d~~~a-------l~  160 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+...   ....++... ..... + .+++...+.++.       +.
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5788899999999999999999998  99999987522   112222211 10100 0 112111122222       24


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        83 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  141 (260)
T 1x1t_A           83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIA  141 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEC
Confidence            7999999999754211   122   233455654    4455555554433 45555554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.41  E-value=0.013  Score=55.05  Aligned_cols=114  Identities=12%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcH---HhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEEL---ASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~---~~al~~aDi  164 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++........+.    +++...+.   .+.+...|+
T Consensus        11 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           11 KTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            5788889999999999999999998  999999986  222233333221111111    11111111   123458999


Q ss_pred             EEEcCCCCCCCC---Cchh---hHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKPG---MTRD---DLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g---~~r~---dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||......   .+..   ..+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~is  143 (267)
T 3t4x_A           89 LINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIA  143 (267)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEEC
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEc
Confidence            999999754221   2222   234556544    45555555443 345555554

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.41  E-value=0.0072  Score=56.96  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=68.5

Q ss_pred             ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-C-CCCceeeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-N-TPSQVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~-~~~~v~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+  |.+|..++..|+..|.  +|++.|.+.. .....++... . ......+++...+.++.       +..
T Consensus         7 k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            7 KKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            579999998  8999999999999998  9999998752 1122222221 1 10000122111122222       337


Q ss_pred             CcEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-----P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .|++|..||....     +  ..+.   ...+..|+.-...+.+.+.++. +.+.||++|
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  144 (275)
T 2pd4_A           85 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS  144 (275)
T ss_dssp             EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEe
Confidence            8999999997542     1  1222   2345667777777777776654 345666665

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.41  E-value=0.0094  Score=56.42  Aligned_cols=115  Identities=22%  Similarity=0.288  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCC--ceeeecCCCcHH------hhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPS--QVLDFTGPEELA------SALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~--~v~~i~~t~d~~------~al~~aD  163 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++ ......++.......  ...+++-..+.+      +.+...|
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           31 GRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            46789999999999999999999998  999999654 233333333221110  001111111111      1234799


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG---MTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus       109 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~is  164 (273)
T 3uf0_A          109 VLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIA  164 (273)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEc
Confidence            9999999754221   122   2234455443    444444444443 45555554

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.41  E-value=0.0096  Score=56.60  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC---CCCcee----eecCCCcHHhhc----
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN---TPSQVL----DFTGPEELASAL----  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~---~~~~v~----~i~~t~d~~~al----  159 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.  ......++....   ....+.    +++-..+.++.+    
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999998  999999986  222223332210   011111    111111222222    


Q ss_pred             ---CCCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          160 ---KGVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       160 ---~~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                         ...|+||..||.....   ..+.   ...+..|+.-...+++.+.+..   ..+.|++++
T Consensus        96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~is  158 (303)
T 1yxm_A           96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNII  158 (303)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence               3699999999864321   1222   2235566655555555544321   245555554

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.40  E-value=0.0029  Score=58.42  Aligned_cols=110  Identities=12%  Similarity=0.072  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH-------hhc--CCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA-------SAL--KGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al--~~aD  163 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++...... .. + ....   +++...+.+       +.+  .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~---D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-V-IVKM---TDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-E-ECCC---CSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-E-EEEc---CCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            46799999999999999999999998  99999997621110 00 0 0011   111011111       122  4799


Q ss_pred             EEEEcCCCCCC-C---CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P---GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~---g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ++|..||.... +   ..+.   ...+..|+.-...+.+.+.++. ..+.||++|
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~is  133 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAG  133 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEEC
Confidence            99999997532 1   1121   2335566665555666655544 346666665

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.40  E-value=0.012  Score=55.00  Aligned_cols=78  Identities=23%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~  161 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........ + .+++-..+.++       .+..
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35788999999999999999999998  999999986  2223333332211100 0 11211112222       2347


Q ss_pred             CcEEEEcCCCC
Q 015172          162 VNVVVIPAGVP  172 (412)
Q Consensus       162 aDiVIiaag~p  172 (412)
                      .|++|..||..
T Consensus        89 id~lv~nAg~~   99 (264)
T 3ucx_A           89 VDVVINNAFRV   99 (264)
T ss_dssp             CSEEEECCCSC
T ss_pred             CcEEEECCCCC
Confidence            89999999873

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.38  E-value=0.0037  Score=58.79  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~  161 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.  .......+........ + .+++...+.++.+       ..
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999998  999999876  2212111211111100 0 1111111222222       35


Q ss_pred             CcEEEEcCCCCCC--C---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK--P---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k--~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||....  +   ..+.   ...+..|+.-    .+.+.+.+.+... +.||++|
T Consensus       112 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~is  171 (279)
T 3ctm_A          112 IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK-GSLIITS  171 (279)
T ss_dssp             CSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEC
Confidence            8999999986532  1   1121   1234445444    5666666665443 4444444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.38  E-value=0.0028  Score=62.06  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=48.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-CchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.||..+|..+...|.  +|+.+|. +.....+.++   .    .. .  ..++++.+++||+|+++.
T Consensus       144 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~---g----~~-~--~~~l~ell~~aDvVil~~  210 (320)
T 1gdh_A          144 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY---Q----AT-F--HDSLDSLLSVSQFFSLNA  210 (320)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH---T----CE-E--CSSHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhc---C----cE-E--cCCHHHHHhhCCEEEEec
Confidence            34579999998 9999999999988887  9999998 7532221111   1    11 1  235677889999999985

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.37  E-value=0.0025  Score=63.42  Aligned_cols=65  Identities=17%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.......+   ....    +. .  ..++++.+++||+|+++.
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~---~~~g----~~-~--~~~l~ell~~aDiV~l~~  223 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGM--NVLVWGRENSKERA---RADG----FA-V--AESKDALFEQSDVLSVHL  223 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSHHHHHHH---HHTT----CE-E--CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEECCCCCHHHH---HhcC----ce-E--eCCHHHHHhhCCEEEEec
Confidence            4579999998 9999999999998898  99999986421111   1111    11 1  246778899999999985

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.37  E-value=0.015  Score=53.42  Aligned_cols=109  Identities=18%  Similarity=0.253  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aDiVI  166 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++... ...++.   ......+++. .+.+       +.+.+.|++|
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~---~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG---AVPLPTDLEK-DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT---CEEEECCTTT-SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC---cEEEecCCch-HHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999999999999999998  99999998632 111221   0000011111 2222       2345899999


Q ss_pred             EcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRK-P--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k-~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        76 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~is  128 (239)
T 2ekp_A           76 HAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIG  128 (239)
T ss_dssp             ECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            99987532 1  1222   223444544    3444444444433 45555554

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.37  E-value=0.01  Score=56.78  Aligned_cols=116  Identities=11%  Similarity=0.070  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCC--ceeeecCCCcHH-------hhcC
Q 015172           93 SFKVAVLGAAGG--IGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPS--QVLDFTGPEELA-------SALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~--vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~--~v~~i~~t~d~~-------~al~  160 (412)
                      .++|.|+||+|+  +|..++..|+..|.  .|++.|.++. .....++.......  ...+++-..+.+       +.+.
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            357889999877  99999999999998  8999998852 11222221110000  000111111122       2234


Q ss_pred             CCcEEEEcCCCCC-----CC--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR-----KP--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~-----k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||...     .+  ..+.   ...+..|+.-...+.+.+.++. ..+.||+++
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            7899999999763     11  1222   2345667666666666666655 456666665

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.37  E-value=0.011  Score=55.88  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~   43 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRC   43 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence            35788999999999999999999998  99999986

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.37  E-value=0.0079  Score=55.14  Aligned_cols=116  Identities=20%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCch--hhhhhhhcccCCCCc-e-eeecCCCcHHhh------
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMNV--KGVAADLSHCNTPSQ-V-LDFTGPEELASA------  158 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~~--~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a------  158 (412)
                      ++|.|+||+|++|..++..|+..|...     .|++.|.+..  .....++........ + .+++-..+.++.      
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   82 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHHH
Confidence            579999999999999999999887522     7999998752  222222321110000 0 111111112222      


Q ss_pred             -cCCCcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHhhCCCeEEEEEc
Q 015172          159 -LKGVNVVVIPAGVPRKPG---MT---RDDLFNINANIVKTLVEA----VADNCPDAFIHIIS  210 (412)
Q Consensus       159 -l~~aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~~~i~~~----i~~~~p~aiviv~T  210 (412)
                       +.+.|+||..||......   .+   ....+..|+.-...+.+.    +.+. ..+.||++|
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~is  144 (244)
T 2bd0_A           83 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFIT  144 (244)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             hCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEe
Confidence             237999999999753211   12   122344555444444444    3333 345665555

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.36  E-value=0.0083  Score=55.83  Aligned_cols=113  Identities=15%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhh-------cCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASA-------LKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~a-------l~~aDi  164 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+..  .....++.. .......+++-..+.++.       +.+.|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-NLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-TEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-ceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4688889999999999999999998  9999999862  222222211 000000011111122222       347899


Q ss_pred             EEEcCCCCC--CC--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPR--KP--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~--k~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||...  .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|
T Consensus        78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~is  133 (248)
T 3asu_A           78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIG  133 (248)
T ss_dssp             EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEc
Confidence            999999753  22  1222   223445543    3445555554433 34555554

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.36  E-value=0.0083  Score=55.55  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~~  161 (412)
                      +++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++........ + .+++...+.++.       +..
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4688889999999999999999998  999988854   2222233332211100 0 112111122222       338


Q ss_pred             CcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 3osu_A           83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLS  140 (246)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            89999999975421   1222   2234556543    444444444443 45555554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.35  E-value=0.04  Score=47.14  Aligned_cols=84  Identities=12%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             CCceEEEEcCC---CCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAA---GGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAa---G~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .+.+|+|||++   |.||..++..+...|+  +  ++|++....   ++.      ....   ..++++...++|+||++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~~---~i~------G~~~---~~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNYD---EIE------GLKC---YRSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCS---EET------TEEC---BSSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCCC---eEC------Ceee---cCCHHHhCCCCCEEEEE
Confidence            35789999975   8999999999999998  6  555554211   110      1221   23455555689999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEE
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH  207 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aivi  207 (412)
                      ..                .+...++++++.+....++++
T Consensus        77 vp----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           77 VP----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             SC----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            31                355666666666655666554

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.35  E-value=0.018  Score=54.57  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhhc------CCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASAL------KGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al------~~aD  163 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|++.  ......++.......  ...+++...+.++.+      ...|
T Consensus        34 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD  111 (275)
T 4imr_A           34 RTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD  111 (275)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence            5788889999999999999999998  999999986  222333333221110  001222112222222      3789


Q ss_pred             EEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||......   .+..   ..+..|+.    +.+.+.+.+.+. ..+.||+++
T Consensus       112 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~is  167 (275)
T 4imr_A          112 ILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIG  167 (275)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence            9999999754221   2222   23445544    444455544443 345565554

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.35  E-value=0.012  Score=54.89  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh----hhhhhhcccCCCCc-e-eeecCCCcHHhh-------cC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK----GVAADLSHCNTPSQ-V-LDFTGPEELASA-------LK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~----g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~  160 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+...    ....++........ + .+++...+.++.       +.
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5788999999999999999999998  89999987522    11222322111100 0 112111122222       23


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||......   .+.   .+.+..|+.    +.+.+.+.+.+....+.||+++
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is  140 (258)
T 3a28_C           81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAA  140 (258)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            8999999999753211   122   223445544    4444555554444325555554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.35  E-value=0.0018  Score=64.32  Aligned_cols=66  Identities=23%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.+.. .....++   .    ..   ...++++.+++||+|+++..
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~---g----~~---~~~~l~ell~~aDvV~l~~P  229 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKET---G----AK---FVEDLNEMLPKCDVIVINMP  229 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHH---C----CE---ECSCHHHHGGGCSEEEECSC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhC---C----Ce---EcCCHHHHHhcCCEEEECCC
Confidence            4579999998 9999999999988898  9999998752 2121111   1    11   12467788999999999853

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.34  E-value=0.0065  Score=61.72  Aligned_cols=94  Identities=19%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.....      ...   . ..   ...++++.++.||+|++....
T Consensus       155 ~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~yd~~~~~------~~~---~-~~---~~~sl~ell~~aDvV~lhvPl  218 (416)
T 3k5p_A          155 RGKTLGIVGY-GNIGSQVGNLAESLGM--TVRYYDTSDKL------QYG---N-VK---PAASLDELLKTSDVVSLHVPS  218 (416)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCCC------CBT---T-BE---ECSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCcchh------ccc---C-cE---ecCCHHHHHhhCCEEEEeCCC
Confidence            4579999998 9999999999998898  99999986311      000   0 11   124678889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~  214 (412)
                        .+. ++ .++  |    .   +.+...-|++++|+++  .++|
T Consensus       219 --t~~-T~-~li--~----~---~~l~~mk~gailIN~aRG~vvd  250 (416)
T 3k5p_A          219 --SKS-TS-KLI--T----E---AKLRKMKKGAFLINNARGSDVD  250 (416)
T ss_dssp             ---------CCB--C----H---HHHHHSCTTEEEEECSCTTSBC
T ss_pred             --CHH-Hh-hhc--C----H---HHHhhCCCCcEEEECCCChhhh
Confidence              111 11 011  1    1   2233334899999985  4555

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.34  E-value=0.015  Score=58.08  Aligned_cols=70  Identities=17%  Similarity=0.350  Sum_probs=44.8

Q ss_pred             ceEEEEcCCCCcHHHHHH-HHHhCCC-CCeEEEEecCchhhhh-hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLAL-LIKMSPL-VSALHLYDVMNVKGVA-ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~-~l~~~gl-~~ev~L~Di~~~~g~~-~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|+||+|++|.-+.. +|..+++ ..+++++.-.. .|.. .++...  ...+..   .++.+ .++++|+|+++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~~-~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDIE-SLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCHH-HHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCChh-HhccCCEEEECCC
Confidence            689999999999999998 8888773 24777775543 2221 122111  111221   22443 5899999999865

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.33  E-value=0.0091  Score=56.09  Aligned_cols=114  Identities=16%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-------HhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-------ASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-------~~al~~aDiV  165 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.... ...+.+........+++...+.       .+.+...|++
T Consensus        27 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l  103 (260)
T 3gem_A           27 SAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAV  103 (260)
T ss_dssp             CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            35788999999999999999999998  899999986211 1111111110000011111111       1234579999


Q ss_pred             EEcCCCCCCCC--Cchh---hHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPRKPG--MTRD---DLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~g--~~r~---dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..||......  .+..   ..+..|+.-.    +.+.+.+.+. ..+.||+++
T Consensus       104 v~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~is  156 (260)
T 3gem_A          104 VHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHIS  156 (260)
T ss_dssp             EECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEEC
T ss_pred             EECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence            99999754322  2222   2345555433    3444444332 235555554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.33  E-value=0.0085  Score=56.51  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDE   43 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35799999999999999999999998  999999986

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.32  E-value=0.008  Score=56.23  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~  160 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++. +.+.  ......++........ + .+++-..+.++.       +.
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35788999999999999999999998  89988 4443  2222223322211110 0 122111122222       23


Q ss_pred             CCcEEEEcCCCC--CCC--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVP--RKP--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p--~k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||..  ..+  ..+.   ...+..|+.-...+.+.+.++. +.+.||+++
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            789999999864  222  1222   2345667776677777776655 345665554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.32  E-value=0.012  Score=56.79  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .++|.|+||+|.+|..+|..|+..|.  .|+++|++
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~   79 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLC   79 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecc
Confidence            35688889999999999999999998  99999986

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.31  E-value=0.0068  Score=56.13  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|++|..++..|+..|.  +|++.|.+.
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~   48 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSA   48 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcc
Confidence            36799999999999999999999998  999999864

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.31  E-value=0.003  Score=61.66  Aligned_cols=60  Identities=18%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.||..+|..+...|.  +|..+|.+.....            .    ...++++.+++||+|+++.
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~----~~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------Y----PFLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------S----CBCCHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------c----ccCCHHHHHhhCCEEEEeC
Confidence            34579999998 9999999999998897  9999998652110            1    1235667889999999985

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.31  E-value=0.013  Score=55.56  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=67.3

Q ss_pred             ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc--CCCCceeeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC--NTPSQVLDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~--~~~~~v~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+  |.+|..++..|+..|.  +|++.|.+.. .....++...  .......+++...+.++.       +..
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578899997  8999999999999998  9999998752 1122222211  110000122111122222       347


Q ss_pred             CcEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-----P--GMTR---DDLFNINANIVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      .|+||..||....     +  ..+.   ...+..|+.-...+++.+.++.  ..+.||++|
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is  160 (285)
T 2p91_A          100 LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLS  160 (285)
T ss_dssp             CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEE
T ss_pred             CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence            8999999997542     1  1222   2345667766666666666554  235565555

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.29  E-value=0.013  Score=55.95  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-CCCCce-eeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-NTPSQV-LDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~~~~~v-~~i~~t~d~~~-------al~  160 (412)
                      .++|.|+||+|  .+|..++..|+..|.  .|++.|.++. .....++... .....+ .+++-..+.++       .+.
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35788999976  999999999999998  8999999862 1111222111 100000 11211112222       234


Q ss_pred             CCcEEEEcCCCCCC-----C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRK-----P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k-----~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||....     +  ..+.   ...+..|+.-...+++.+.++. ..+.||+++
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence            78999999997642     1  1222   2345667777777777777665 456666665

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.29  E-value=0.014  Score=54.79  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   55 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNL   55 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45789999999999999999999998  999999986

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.28  E-value=0.013  Score=54.28  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~aD  163 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+. ..... .+........ + .+++...+.++       .+.+.|
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            8 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999999999998  999999976 32111 2222111100 0 11111112222       235899


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +||..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (249)
T 2ew8_A           85 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  140 (249)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEc
Confidence            999999975321   1222   2234555544    455555555443 45555554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.28  E-value=0.0097  Score=58.56  Aligned_cols=62  Identities=29%  Similarity=0.366  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.||.+....    . ..   . . .+   .++++.+++||+|+++.
T Consensus       144 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~----~-~~---~-~-~~---~~l~ell~~aDvV~~~~  205 (333)
T 1dxy_A          144 GQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG----D-HP---D-F-DY---VSLEDLFKQSDVIDLHV  205 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS----C-CT---T-C-EE---CCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCcchh----h-Hh---c-c-cc---CCHHHHHhcCCEEEEcC
Confidence            3579999998 9999999999998898  999999875221    1 10   1 1 12   25677889999999985

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.013  Score=55.79  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~a  162 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++.......  ...+++-..+.++       .+...
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            9 KIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5688889999999999999999998  999999986  222333333211110  0011111112222       23479


Q ss_pred             cEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG----MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.....+    .+.   ...+..|+.    +.+.+.+.+.+. ..+.|++++
T Consensus        87 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~is  144 (280)
T 3tox_A           87 DTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTS  144 (280)
T ss_dssp             CEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence            99999999643221    222   223445544    344444444433 345555554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.27  E-value=0.015  Score=54.18  Aligned_cols=115  Identities=20%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             CceEEEEcCCC-CcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHHhh-------
Q 015172           93 SFKVAVLGAAG-GIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELASA-------  158 (412)
Q Consensus        93 ~~KV~VIGAaG-~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~~a-------  158 (412)
                      .++|.|+||+| .+|..++..|+..|.  .|++.|.+.  ......++..... ..+.    +++-..+.++.       
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45788999877 599999999999998  999999986  2222333322211 1111    12111122222       


Q ss_pred             cCCCcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          159 LKGVNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +...|+||..||......   .+..   ..+..|+.    +.+.+.+.+.+....+.|++++
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s  160 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNA  160 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEEC
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            247799999999754221   2222   23444543    4444455554443556666654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.27  E-value=0.0028  Score=63.98  Aligned_cols=77  Identities=25%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCc--hhhhhhhhcccC---CCCceeeecCCCcHHhhcCC--CcE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMN--VKGVAADLSHCN---TPSQVLDFTGPEELASALKG--VNV  164 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~--~~g~~~dL~~~~---~~~~v~~i~~t~d~~~al~~--aDi  164 (412)
                      |+||.|+|| |.+|..++..|+..|-+ .+|++.|.+.  +...+.++....   .....-+++...++++.+++  +|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            479999998 99999999999988743 5899999986  233333333211   10001112212345556666  899


Q ss_pred             EEEcCC
Q 015172          165 VVIPAG  170 (412)
Q Consensus       165 VIiaag  170 (412)
                      ||.++|
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999976

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.25  E-value=0.018  Score=55.18  Aligned_cols=94  Identities=18%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .++|+|||+ |.||..++..+...|.  +|..+|.+.....  .+.+..  .  ..+ ...++++.++++|+||.+... 
T Consensus       155 g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~--~~~-~~~~l~~~l~~aDvVi~~~p~-  223 (293)
T 3d4o_A          155 GANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--M--EPF-HISKAAQELRDVDVCINTIPA-  223 (293)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--S--EEE-EGGGHHHHTTTCSEEEECCSS-
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--C--eec-ChhhHHHHhcCCCEEEECCCh-
Confidence            479999998 9999999999998897  9999999752211  111111  1  111 123566778999999999632 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVN  214 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~  214 (412)
                         ++     +  |.    +   .++..-|++++++++ +|.+
T Consensus       224 ---~~-----i--~~----~---~l~~mk~~~~lin~ar~~~~  249 (293)
T 3d4o_A          224 ---LV-----V--TA----N---VLAEMPSHTFVIDLASKPGG  249 (293)
T ss_dssp             ---CC-----B--CH----H---HHHHSCTTCEEEECSSTTCS
T ss_pred             ---HH-----h--CH----H---HHHhcCCCCEEEEecCCCCC
Confidence               11     1  11    1   222233789998887 7766

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.25  E-value=0.0088  Score=56.85  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC---ceeeecCCCcHH-------hhcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS---QVLDFTGPEELA-------SALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~---~v~~i~~t~d~~-------~al~  160 (412)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.......   ...+++...+.+       +.+.
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35788889999999999999999998  999999986  222222332111000   001121111222       2234


Q ss_pred             CCcEEEEcCCCCCCCC----Cchh---hHHHhhHH----HHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG----MTRD---DLFNINAN----IVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g----~~r~---dl~~~N~~----i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ..|++|..||.....+    .+..   ..+..|+.    +.+.+.+.+.+.. ..+.||+++
T Consensus       111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~is  172 (281)
T 4dry_A          111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNG  172 (281)
T ss_dssp             CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEEC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            7799999999753221    2222   23445543    4556666666554 356666665

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.25  E-value=0.019  Score=57.63  Aligned_cols=71  Identities=20%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CceEEEEcCCCCcHHHHHH-HHHhCCC-CCeEEEEecCchhhh-hhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLAL-LIKMSPL-VSALHLYDVMNVKGV-AADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~-~l~~~gl-~~ev~L~Di~~~~g~-~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+||||+|++|.-+.. +|..+++ ..+++++.-.. .|. ..++...  ...+..   .++.+ .++++|+|+++.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~~-~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSID-DLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCHH-HHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCChh-HhcCCCEEEECC
Confidence            4799999999999999998 8888773 23777775443 111 1122211  111221   22443 578999999986


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.23  E-value=0.016  Score=55.42  Aligned_cols=150  Identities=13%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEE-EEecCchhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS-PLVSALH-LYDVMNVKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~-L~Di~~~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      ++|||+|+|++|.||..++..+... ++  +|+ .+|.+.......|+.+..  ....+   ..++|+++.++++|+||.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v---~~~~dl~~~l~~~DvVID   78 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGV---TVQSSLDAVKDDFDVFID   78 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSC---CEESCSTTTTTSCSEEEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCc---eecCCHHHHhcCCCEEEE
Confidence            3589999998899999999877754 55  666 788764211112222211  01111   123567777889999995


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccc---h
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLD---V  243 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Ld---s  243 (412)
                      ...                -....+++..+.+..-+   +++..| .....-..++...+.  ...-++... .+.   -
T Consensus        79 ft~----------------p~~~~~~~~~a~~~G~~---vVigTt-G~~~e~~~~L~~~a~--~~~vv~a~N~siGvn~~  136 (273)
T 1dih_A           79 FTR----------------PEGTLNHLAFCRQHGKG---MVIGTT-GFDEAGKQAIRDAAA--DIAIVFAANFSVGVNVM  136 (273)
T ss_dssp             CSC----------------HHHHHHHHHHHHHTTCE---EEECCC-CCCHHHHHHHHHHTT--TSCEEECSCCCHHHHHH
T ss_pred             cCC----------------hHHHHHHHHHHHhCCCC---EEEECC-CCCHHHHHHHHHhcC--CCCEEEEecCcHHHHHH
Confidence            531                12334455555544422   234445 222222223322221  111222221 111   2


Q ss_pred             HHHHHHHHHHcCCCCCCeeeeEEcccCC
Q 015172          244 VRANTFVAQKKNLKLIDVDVPVVGGHAG  271 (412)
Q Consensus       244 ~R~~~~la~~l~v~~~~V~~~ViG~hgg  271 (412)
                      .++-..+|+.|+   .+.+.-|+=-||.
T Consensus       137 ~~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          137 LKLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHHhcC---CCCCEEEEEeecC
Confidence            456677888885   4566777777873

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.23  E-value=0.0055  Score=60.44  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      -..++|+|||. |.||..+|..+...|.  +|..||.+.....+.+   ..    .. .   .++++.+++||+|+++..
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~---~g----~~-~---~~l~ell~~aDvV~l~~P  228 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSAS---FG----VQ-Q---LPLEEIWPLCDFITVHTP  228 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHH---TT----CE-E---CCHHHHGGGCSEEEECCC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhh---cC----ce-e---CCHHHHHhcCCEEEEecC
Confidence            34579999998 9999999999988887  9999998753221111   11    11 1   256778999999999853

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.21  E-value=0.018  Score=53.50  Aligned_cols=110  Identities=22%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH---hhcCCCcEEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA---SALKGVNVVVI  167 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~---~al~~aDiVIi  167 (412)
                      -+.++|.|+||+|++|..++..|+..|.  +|++.|++...  ..++...  .. +.++  ..+.+   +.+.+.|+||.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~--~~~~~~~--~~-~~D~--~~~~~~~~~~~~~iD~lv~   87 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSGHR--YV-VCDL--RKDLDLLFEKVKEVDILVL   87 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTCSE--EE-ECCT--TTCHHHHHHHSCCCSEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHhhCCe--EE-EeeH--HHHHHHHHHHhcCCCEEEE
Confidence            3457899999999999999999999998  99999997511  1111100  00 0111  12232   23458999999


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  139 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  139 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence            999754211   122   223344443    3455556565543 35555554

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.21  E-value=0.014  Score=54.76  Aligned_cols=115  Identities=18%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCce--eeecCCCcHHhh-------cC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQV--LDFTGPEELASA-------LK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~v--~~i~~t~d~~~a-------l~  160 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.   .......+.........  .+++...+..+.       +.
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35788999999999999999999998  999999854   12222222222111000  011111122222       24


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +.|+||..||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.|++++
T Consensus       107 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is  165 (271)
T 4iin_A          107 GLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVA  165 (271)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEe
Confidence            8999999999754321   122   223445544    4444555554433 35555554

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.20  E-value=0.012  Score=55.45  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=63.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh-hhhhcccCC--CCceeeecCCCcHHhhcCCCcEEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV-AADLSHCNT--PSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~-~~dL~~~~~--~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      .+.++|.|+||+|.+|..++..|+..|.  +|++.|.+..... ..+...+..  +..+....  ....+.+...|++|.
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~--~~~~~~~g~iD~lv~   87 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAV--EKTTKKYGRIDILVN   87 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHHHHHHHH--HHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHHHHHHHH--HHHHHHcCCCCEEEE
Confidence            4457899999999999999999999998  9999999762110 000001100  00011000  111223458999999


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPG---MTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g---~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++
T Consensus        88 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  139 (269)
T 3vtz_A           88 NAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIA  139 (269)
T ss_dssp             CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence            999754221   122   2234455443    344444444433 45555554

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.18  E-value=0.0072  Score=56.01  Aligned_cols=56  Identities=23%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa  169 (412)
                      |||+|||+ |.||..++..+...++  +| .++|.++ .  ..+           .   .+|+++.+ .++|+||++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~-~--~~~-----------~---~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRG-E--HEK-----------M---VRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSC-C--CTT-----------E---ESSHHHHTTSCCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCc-c--hhh-----------h---cCCHHHHhcCCCCEEEECC
Confidence            68999998 9999999988887787  87 6899864 1  110           1   25677767 6999999994

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.18  E-value=0.018  Score=58.77  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .++|+|+|. |.||..+|..+...|.  +|..+|+++... .+.+   ..    .. .   .++++++++||+||.+.+.
T Consensus       211 GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~---~G----~~-~---~sL~eal~~ADVVilt~gt  276 (436)
T 3h9u_A          211 GKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAM---EG----YQ-V---LLVEDVVEEAHIFVTTTGN  276 (436)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH---TT----CE-E---CCHHHHTTTCSEEEECSSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHH---hC----Ce-e---cCHHHHHhhCCEEEECCCC
Confidence            479999998 9999999999999997  999999986321 1111   11    11 1   2577899999999987543


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      ..   .     +  |       .+.++..-|+++|++++++.
T Consensus       277 ~~---i-----I--~-------~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          277 DD---I-----I--T-------SEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             SC---S-----B--C-------TTTGGGCCTTEEEEECSSSG
T ss_pred             cC---c-----c--C-------HHHHhhcCCCcEEEEeCCCC
Confidence            21   1     0  0       01233334899999998764

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.17  E-value=0.019  Score=54.62  Aligned_cols=34  Identities=24%  Similarity=0.135  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe-cCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD-VMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D-i~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.| .+.
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            5688889999999999999999998  999999 775

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.17  E-value=0.008  Score=56.66  Aligned_cols=112  Identities=20%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aDiVI  166 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.....  ++..........+++...+.+       +.+...|++|
T Consensus        17 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           17 KLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERLK--ALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHH--TTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            5688999999999999999999998  9999999752211  111100000000111111122       2234889999


Q ss_pred             EcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        93 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~is  145 (266)
T 3p19_A           93 NNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINIS  145 (266)
T ss_dssp             ECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            999975321   1222   223455554    3444555554443 34454554

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.17  E-value=0.0036  Score=57.53  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH-------hhc--CCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA-------SAL--KGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al--~~aDi  164 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++...... .. + .....+.+   ..+.+       +.+  .+.|+
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~D~~~---~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-SN-I-LVDGNKNW---TEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-EE-E-ECCTTSCH---HHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-cc-E-EEeCCCCC---HHHHHHHHHHHHHHhCCCCCCE
Confidence            5799999999999999999999998  99999997621110 00 0 00111110   01111       122  48999


Q ss_pred             EEEcCCCCCC-C---CCc---hhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          165 VVIPAGVPRK-P---GMT---RDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k-~---g~~---r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      ||..||.... +   ..+   ....+..|+.-...+.+.+.++. ..+.|+++|
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  129 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTG  129 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEC
Confidence            9999997432 1   111   12345567666666666666554 346666665

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.16  E-value=0.012  Score=55.69  Aligned_cols=77  Identities=21%  Similarity=0.264  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCC-CcH-------Hhh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGP-EEL-------ASA  158 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t-~d~-------~~a  158 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|++.  ......++...... .+.    +++-. .+.       .+.
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSNHE-NVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCC-SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            35788889999999999999999998  999999986  23333344332211 111    22111 111       112


Q ss_pred             cCCCcEEEEcCCCC
Q 015172          159 LKGVNVVVIPAGVP  172 (412)
Q Consensus       159 l~~aDiVIiaag~p  172 (412)
                      +...|+||..||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            34899999999975

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.015  Score=55.14  Aligned_cols=113  Identities=20%  Similarity=0.312  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCcee----eecCCCcHHh-------hc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQVL----DFTGPEELAS-------AL  159 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~v~----~i~~t~d~~~-------al  159 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.   ......++.... ...+.    +++...+.++       .+
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            5788999999999999999999998  999999843   222222332211 11111    1111112222       23


Q ss_pred             CCCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...|++|..||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  162 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIA  162 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEC
Confidence            48999999999754221   122   223445544    3444444444443 35555554

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.14  E-value=0.013  Score=54.65  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc--C-CCCc-e-eeecCCCcHH-------hh
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC--N-TPSQ-V-LDFTGPEELA-------SA  158 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~--~-~~~~-v-~~i~~t~d~~-------~a  158 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++.  ......++...  . .... + .+++-..+.+       +.
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35788999999999999999999998  999999986  22222333221  1 1100 0 1121111111       12


Q ss_pred             cCCCcEEEEcCCCCCCC--CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172          159 LKGVNVVVIPAGVPRKP--GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~--g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +...|++|..||.....  ..+.   ...+..|+.    +.+.+.+.+.+. ..+.|++++-
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  145 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVAS  145 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEcc
Confidence            34789999999975322  2222   223444543    444444444443 3455655553

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.13  E-value=0.02  Score=54.02  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-CCCC-ce-eeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-NTPS-QV-LDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-~~~~-~v-~~i~~t~d~~~-------al~  160 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++... .... .+ .+++-..+.++       .+.
T Consensus        27 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           27 DKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35788999999999999999999998  999999986  22222333211 1110 00 11211111221       234


Q ss_pred             CCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ..|++|..||......   .+.   ...+..|+.-...+.+.+.+..   ..+.||+++
T Consensus       105 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~is  163 (277)
T 4fc7_A          105 RIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNIT  163 (277)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEEC
T ss_pred             CCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            8999999998643211   222   2234556554444444443222   256666654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.13  E-value=0.04  Score=52.72  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=50.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcH-------Hhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEEL-------ASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~-------~~al  159 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.  ......++...... .+.    +++-..+.       .+.+
T Consensus        41 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           41 ARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELGAG-NVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSSSS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCC-cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35788889999999999999999998  999999986  23333344332211 111    12111111       1234


Q ss_pred             CCCcEEEEcCCCCC
Q 015172          160 KGVNVVVIPAGVPR  173 (412)
Q Consensus       160 ~~aDiVIiaag~p~  173 (412)
                      ...|++|..||...
T Consensus       118 g~iD~lvnnAg~~~  131 (293)
T 3rih_A          118 GALDVVCANAGIFP  131 (293)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            57899999999743

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.12  E-value=0.0084  Score=55.55  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec-Cc--hhhhhhhhcccCCCCce--eeecCCCcHH-------hh
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV-MN--VKGVAADLSHCNTPSQV--LDFTGPEELA-------SA  158 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di-~~--~~g~~~dL~~~~~~~~v--~~i~~t~d~~-------~a  158 (412)
                      .+.++|.|+||+|.+|..++..|+..|.  .|++.|. +.  ......++.........  .+++-..+.+       +.
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            3457889999999999999999999998  8999884 33  22222233222111100  1111111122       22


Q ss_pred             cCCCcEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172          159 LKGVNVVVIPAGVPRKP---GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|-
T Consensus        89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  150 (256)
T 3ezl_A           89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISS  150 (256)
T ss_dssp             TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            34789999999975422   1222   2234555544    445555555443 355555553

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.12  E-value=0.01  Score=56.07  Aligned_cols=79  Identities=16%  Similarity=0.199  Sum_probs=48.4

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCC
Q 015172           93 SFKVAVLGAAGG--IGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~--vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~  161 (412)
                      .++|.|+||+|.  +|..+|..|+..|.  .|++.|.+.......++........ + .+++-..+.+       +.+..
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            357889998855  99999999999998  9999999862222223322111100 0 1111111222       22346


Q ss_pred             CcEEEEcCCCCC
Q 015172          162 VNVVVIPAGVPR  173 (412)
Q Consensus       162 aDiVIiaag~p~  173 (412)
                      .|+||..||...
T Consensus       104 id~li~nAg~~~  115 (280)
T 3nrc_A          104 LDAIVHSIAFAP  115 (280)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCccCC
Confidence            799999999764

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.11  E-value=0.037  Score=51.78  Aligned_cols=116  Identities=18%  Similarity=0.173  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce----eeecCCCcHH-------hhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV----LDFTGPEELA-------SAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v----~~i~~t~d~~-------~al  159 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.  ......++........+    .+++...+.+       +.+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35788999999999999999999998  899999986  22233333321100001    1121111111       223


Q ss_pred             CCCcEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRK-P--GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T  210 (412)
                      ...|++|..||.... +  ..+.   ...+..|+.-...+++.+.++.   ..+.||+++
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is  145 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVN  145 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEC
Confidence            478999999997532 1  2222   2345566655555555544332   345555554

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.10  E-value=0.0047  Score=61.25  Aligned_cols=66  Identities=24%  Similarity=0.351  Sum_probs=47.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|.........++   .    ...   ..++++.+++||+|+++..
T Consensus       167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          167 RGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERAL---G----LQR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHH---T----CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhc---C----Cee---cCCHHHHHhcCCEEEEcCC
Confidence            4579999998 9999999999998898  99999986532211111   1    111   1356778899999999853

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.09  E-value=0.017  Score=56.21  Aligned_cols=34  Identities=24%  Similarity=0.135  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe-cCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD-VMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D-i~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.| .+.
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4688889999999999999999998  999999 765

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.09  E-value=0.019  Score=56.32  Aligned_cols=65  Identities=20%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -..++|+|||. |.||..+|..+...|.  +|..||.+....  ..+         .......++++.+++||+|+++.
T Consensus       138 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~--~~~---------~~~~~~~~l~ell~~aDvV~l~l  202 (324)
T 3hg7_A          138 LKGRTLLILGT-GSIGQHIAHTGKHFGM--KVLGVSRSGRER--AGF---------DQVYQLPALNKMLAQADVIVSVL  202 (324)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCC--TTC---------SEEECGGGHHHHHHTCSEEEECC
T ss_pred             cccceEEEEEE-CHHHHHHHHHHHhCCC--EEEEEcCChHHh--hhh---------hcccccCCHHHHHhhCCEEEEeC
Confidence            34579999998 9999999999998898  999999864110  000         01112356788899999999985

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.08  E-value=0.0084  Score=61.08  Aligned_cols=91  Identities=12%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|+|. |.||..+|..+...|.  +|+.+|+++... .+..  + .    ..    ..+++++++++|+||.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~~--~-G----~~----v~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQACM--D-G----FR----LVKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--T-T----CE----ECCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHHH--c-C----CE----eccHHHHHhcCCEEEECCC
Confidence            3578999998 9999999999998898  899999986221 1111  1 1    11    1246788999999999744


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      .+   +.       .|    .+...   ..-|+++|++++++.
T Consensus       285 t~---~l-------I~----~e~l~---~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NK---NV-------VT----REHLD---RMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CS---CS-------BC----HHHHH---HSCTTEEEEECSSTT
T ss_pred             Cc---cc-------CC----HHHHH---hcCCCcEEEEecCCC
Confidence            32   11       11    12222   234799999998763

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.08  E-value=0.028  Score=52.52  Aligned_cols=115  Identities=17%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCce--eeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQV--LDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~v--~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+...   ......++.........  -+++...+.++.       +..
T Consensus        27 k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            5788999999999999999999998  887765433   22222333222111000  112111122222       348


Q ss_pred             CcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|+||..||......   .+.   ...+..|+.    +.+.+...+.+....+.||+++
T Consensus       105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~is  163 (267)
T 4iiu_A          105 WYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLS  163 (267)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             ccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            999999999764221   122   233445543    3344444444344566666654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.07  E-value=0.014  Score=54.51  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~~  161 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++. +.+.  ......++.+...... + .+++-..+.++.       +..
T Consensus         5 k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5688889999999999999999998  88886 6654  2222333332221100 0 112111122222       346


Q ss_pred             CcEEEEcCCCCCCCC---Cchh---hHHHhhHHHH----HHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTRD---DLFNINANIV----KTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r~---dl~~~N~~i~----~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||......   .+..   ..+..|+.-.    +.+.+.+.+. ..+.||+++
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~is  140 (258)
T 3oid_A           83 LDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSIS  140 (258)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEE
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence            799999998643211   2222   2345555443    4444444433 345555554

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.05  E-value=0.018  Score=53.34  Aligned_cols=34  Identities=29%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus         8 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~   41 (250)
T 2fwm_X            8 KNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAF   41 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCch
Confidence            5799999999999999999999998  999999875

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.02  E-value=0.015  Score=54.73  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ +++.|+|.+.
T Consensus        29 ~~VlvvG~-GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             CcEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            58999998 9999999999999996 6999999874

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.01  E-value=0.021  Score=53.75  Aligned_cols=115  Identities=20%  Similarity=0.222  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc--eeeecCCCcHHh-------hcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ--VLDFTGPEELAS-------ALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~--v~~i~~t~d~~~-------al~~  161 (412)
                      +.+.|+||+|.+|..+|..|+..|.  .|++.+...   ......++........  ..+++...+.++       .+..
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  105 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGG  105 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999999999999999999998  888886543   2222222322211100  011211112222       2348


Q ss_pred             CcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .|++|..||......   .+.   ...+..|+.-...+++.+.++. ..+.||+++
T Consensus       106 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          106 VDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            999999999753211   122   2334567666666666665554 456666665

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.00  E-value=0.021  Score=53.48  Aligned_cols=116  Identities=17%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhhhcccCCCC--ceeeecCCCcHHh-------h
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAADLSHCNTPS--QVLDFTGPEELAS-------A  158 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------a  158 (412)
                      .+.+.|+||+|.+|..++..|+..|.  .|++.|...     ......++.......  ...+++-..+.++       .
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35788999999999999999999998  999988643     122223333221110  0011211112222       2


Q ss_pred             cCCCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          159 LKGVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       159 l~~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      +...|++|..||......   .+.   ...+..|+.-...+.+.+.++. +.+.|++++
T Consensus        89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is  147 (262)
T 3ksu_A           89 FGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA  147 (262)
T ss_dssp             HCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence            347899999999754221   122   2335567776666777766654 456666655

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.00  E-value=0.025  Score=53.20  Aligned_cols=115  Identities=21%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~  160 (412)
                      .+.|.|+||+|.+|..++..|+..|.  .|++.|...   ......++........ + .+++-..+.++       .+.
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35688889999999999999999998  999998843   2222223322211100 0 12211112222       234


Q ss_pred             CCcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||......   .+..   ..+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus       106 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  164 (269)
T 4dmm_A          106 RLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA  164 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence            8899999999754321   1222   23445544    3444444444433 34554544

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.00  E-value=0.0086  Score=57.94  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .+.|.|+||+|.+|..+|..|+..|.  .|++.|.+
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            35678889999999999999999998  99999986

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.98  E-value=0.0071  Score=59.48  Aligned_cols=63  Identities=19%  Similarity=0.290  Sum_probs=47.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.+|...... ..++    .    . +  ..++++.+++||+|+++.
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~----~----~-~--~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          145 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK----G----Y-Y--VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT----T----C-B--CSCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh----C----e-e--cCCHHHHHhhCCEEEEcC
Confidence            3579999998 9999999999998898  999999876322 1111    1    1 1  125677889999999985

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.97  E-value=0.015  Score=54.98  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+.
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            46799999999999999999999998  999999986

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.97  E-value=0.0037  Score=62.44  Aligned_cols=96  Identities=18%  Similarity=0.287  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.........+   ..    .. .   .++++.++.||+|+++...
T Consensus       175 ~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~---~g----~~-~---~~l~ell~~aDvV~l~~Pl  240 (365)
T 4hy3_A          175 AGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEE---NG----VE-P---ASLEDVLTKSDFIFVVAAV  240 (365)
T ss_dssp             SSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHH---TT----CE-E---CCHHHHHHSCSEEEECSCS
T ss_pred             CCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhh---cC----ee-e---CCHHHHHhcCCEEEEcCcC
Confidence            3579999998 9999999998887787  9999998742211111   11    11 1   3577889999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~  214 (412)
                        .+. ++ .++  |.       +.+...-|++++|+++  ..+|
T Consensus       241 --t~~-T~-~li--~~-------~~l~~mk~gailIN~aRG~~vd  272 (365)
T 4hy3_A          241 --TSE-NK-RFL--GA-------EAFSSMRRGAAFILLSRADVVD  272 (365)
T ss_dssp             --SCC-----CC--CH-------HHHHTSCTTCEEEECSCGGGSC
T ss_pred             --CHH-HH-hhc--CH-------HHHhcCCCCcEEEECcCCchhC
Confidence              111 11 111  11       1233334899998885  4455

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.97  E-value=0.013  Score=56.70  Aligned_cols=75  Identities=11%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|.|||+ |.+|..++..|+..|. .+|+++|++..  ...+.++... .. ....   ..++.+.++++|+||.+.+
T Consensus       141 ~~~vlVlGa-Gg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~~-~~-~~~~---~~~~~~~~~~aDivIn~t~  213 (297)
T 2egg_A          141 GKRILVIGA-GGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDER-RS-AYFS---LAEAETRLAEYDIIINTTS  213 (297)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCSS-SC-CEEC---HHHHHHTGGGCSEEEECSC
T ss_pred             CCEEEEECc-HHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhhc-cC-ceee---HHHHHhhhccCCEEEECCC
Confidence            468999998 9999999999999884 58999999863  2233222211 10 1111   1345567899999999987


Q ss_pred             CCCC
Q 015172          171 VPRK  174 (412)
Q Consensus       171 ~p~k  174 (412)
                      .+..
T Consensus       214 ~~~~  217 (297)
T 2egg_A          214 VGMH  217 (297)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            6644

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.97  E-value=0.018  Score=57.04  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=49.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||+ |.+|..++..+.. .+ +.+|.++|++.  ++..+.++... ..  +. +....++++++++||+||.+.
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~-~~~V~V~~r~~~~a~~la~~~~~~-~g--~~-~~~~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY-SG--LT-IRRASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC-TT--CE-EEECSSHHHHHTTCSEEEECC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHhc-cC--ce-EEEeCCHHHHHhcCCEEEEec
Confidence            468999998 9999999876654 44 46999999986  33333333221 01  11 122357888899999999985


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.96  E-value=0.022  Score=53.89  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=31.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus        24 k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           24 PAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            5788889999999999999999998  999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.96  E-value=0.011  Score=61.89  Aligned_cols=65  Identities=25%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.||.+.....+.++   .    +..    .++++.+++||+|+++..
T Consensus       141 ~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---g----~~~----~~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          141 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQL---G----IEL----LSLDDLLARADFISVHLP  205 (529)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHH---T----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----cEE----cCHHHHHhcCCEEEECCC
Confidence            3579999998 9999999999998898  99999987522222111   1    111    146678999999999853

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.016  Score=54.40  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|.|+||+|++|..++..|+..|.  +|++.|.+.
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   62 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSI   62 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            5788999999999999999999998  999999875

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.92  E-value=0.032  Score=55.68  Aligned_cols=98  Identities=14%  Similarity=0.229  Sum_probs=56.4

Q ss_pred             CceEEEEcCCCCcHHHHHH-HHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLAL-LIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~-~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |+||+|+||+|.+|..+.. .+...++ .-+++++--+. .|..  +.+.. ...+. +....+.+ .++++|+||++.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~--v~~~~-g~~i~-~~~~~~~~-~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQA--APSFG-GTTGT-LQDAFDLE-ALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSB--CCGGG-TCCCB-CEETTCHH-HHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCC--ccccC-CCceE-EEecCChH-HhcCCCEEEECCC
Confidence            5799999988999999998 5555543 23777776543 2221  11110 01111 11123444 4789999999965


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                      ...-+++++...+..-..++  +.||++
T Consensus        75 ----------------~~~s~~~a~~~~~~G~k~vV--ID~ss~  100 (367)
T 1t4b_A           75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (367)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chhHHHHHHHHHHCCCCEEE--EcCChh
Confidence                            23345555555543323344  677765

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.90  E-value=0.0099  Score=59.37  Aligned_cols=76  Identities=21%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.++|+|+|+ |.||..++..+...|.  +|+.+|++..+ ..+.+..  ...... ......++.+.++++|+||.+++
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~-~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHT-RYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEE-EECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEe-ccCCHHHHHHHHcCCCEEEECCC
Confidence            4579999998 9999999999999997  89999998622 2222211  111101 11112356667889999999988


Q ss_pred             CCC
Q 015172          171 VPR  173 (412)
Q Consensus       171 ~p~  173 (412)
                      .|.
T Consensus       241 ~p~  243 (377)
T 2vhw_A          241 VPG  243 (377)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            775

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=95.90  E-value=0.02  Score=52.87  Aligned_cols=112  Identities=10%  Similarity=0.102  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-e--cCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-D--VMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-D--i~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++. |  .+.  ......++....  ....+....  ....+.+...|++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~g~iD~lv   77 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESENPGTIALAEQKPERLV--DATLQHGEAIDTIV   77 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHH--HHHGGGSSCEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHH--HHHHHHcCCCCEEE
Confidence            4688899999999999999999998  99999 5  765  222222230000  001111100  11112345789999


Q ss_pred             EcCCCCCC----C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRK----P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k----~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..||....    +  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~is  133 (244)
T 1zmo_A           78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFIT  133 (244)
T ss_dssp             ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEC
Confidence            99997543    1  1222   2234555543    34444444433 346665554

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.88  E-value=0.022  Score=53.36  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=61.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe-cCc--hhhhhhhhcccCCCC--ceeeecCCCcHH-------hhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD-VMN--VKGVAADLSHCNTPS--QVLDFTGPEELA-------SALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D-i~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~-------~al~~  161 (412)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+ .+.  ......++.......  ...+++...+.+       +.+..
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  104 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR  104 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4688889999999999999999998  887774 443  222222222211100  000111111122       22347


Q ss_pred             CcEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHhhC--CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG----MTR---DDLFNINAN----IVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g----~~r---~dl~~~N~~----i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      .|+||..||....++    .+.   ...+..|+.    +.+.+.+.+.+..  ..+.||++|
T Consensus       105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~is  166 (272)
T 4e3z_A          105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVS  166 (272)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEc
Confidence            899999999754322    122   223445543    3444445454421  356665654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.88  E-value=0.0091  Score=59.34  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.++|+|+|+ |.+|..++..+...|.  +|+++|++..+ ..+.+..  .... ........++++.++++|+||.+++
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~--g~~~-~~~~~~~~~l~~~~~~~DvVi~~~g  238 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVF--GGRV-ITLTATEANIKKSVQHADLLIGAVL  238 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSE-EEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc--CceE-EEecCCHHHHHHHHhCCCEEEECCC
Confidence            3479999999 9999999999999998  99999998622 1222111  1110 1112222456667889999999988


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .+
T Consensus       239 ~~  240 (369)
T 2eez_A          239 VP  240 (369)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=95.88  E-value=0.016  Score=54.86  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~a  162 (412)
                      +.+.|.||++.+|..+|..|+..|.  .|++.|+++  +...+.++.......  ...+++-..       ...+.+-.-
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            4566669999999999999999998  999999986  233334443322110  000111111       112335689


Q ss_pred             cEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||......   .+..   ..+..|+.    ..+.+++.+.+....+.||+++
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis  145 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG  145 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence            99999999754221   2222   23445543    4566666665555566676665

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.87  E-value=0.0085  Score=54.53  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +++.|+||+|.+|..++..|+..|.  .|++.|.+..    .|+.+..   .+.      ..-+.+...|++|..||...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCCC
Confidence            5688999999999999999999998  8999988642    2332211   011      11123568899999999652


Q ss_pred             C--C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          174 K--P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       174 k--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .  +  ..+.   ...+..|+.-...+.+.+.++. +.+.|++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~s  116 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTS  116 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEec
Confidence            2  2  1222   2345667776777777776665 456666665

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=95.87  E-value=0.025  Score=53.63  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---------hhhhhhhcccCCCC--ceeeecCCCcHHh----
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---------KGVAADLSHCNTPS--QVLDFTGPEELAS----  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---------~g~~~dL~~~~~~~--~v~~i~~t~d~~~----  157 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+..         .....++.......  ...+++-..+.++    
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            35788999999999999999999998  9999999752         11122222211100  0001211112222    


Q ss_pred             ---hcCCCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEcC
Q 015172          158 ---ALKGVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIISN  211 (412)
Q Consensus       158 ---al~~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~TN  211 (412)
                         .+...|++|..||.....   ..+.   ...+..|+.-...+++.+.++.   ..+.||++|-
T Consensus        87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS  152 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP  152 (285)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence               234899999999975321   1222   2345567776666777666554   3456666654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.87  E-value=0.011  Score=59.84  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCc---------eeeecC----------
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQ---------VLDFTG----------  151 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~---------v~~i~~----------  151 (412)
                      +..||+|||+ |.||...+..+...|.  +|..+|++.. ...+.++........         ...+.-          
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            4579999998 9999999999998897  8999999872 223333211000000         000110          


Q ss_pred             CCcHHhhcCCCcEEEEcCCCCC
Q 015172          152 PEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus       152 t~d~~~al~~aDiVIiaag~p~  173 (412)
                      ..++++.+++||+||.++..|.
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg  287 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPG  287 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSS
T ss_pred             HhHHHHHhcCCCEEEECCcCCC
Confidence            1256778999999999987764

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.86  E-value=0.0098  Score=60.91  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCc-ee-eecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ-VL-DFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~-v~-~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +++|.|+|+ |++|..++..|+..|.  +|++.|.+..+..  ++.+...... +. +++...++.+.++++|+||.+++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~a~--~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~   77 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLESAK--KLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   77 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHHHH--HTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHHHH--HHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence            468999996 9999999999998886  8999999763211  1211100000 00 11111245567889999999986


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      ..
T Consensus        78 ~~   79 (450)
T 1ff9_A           78 YT   79 (450)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.84  E-value=0.015  Score=55.16  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            35788999999999999999999998  999999986

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.83  E-value=0.023  Score=53.24  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~   59 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSER   59 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCc
Confidence            4577889999999999999999998  999999654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.83  E-value=0.0039  Score=62.76  Aligned_cols=123  Identities=16%  Similarity=0.269  Sum_probs=75.0

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      .-+..||.|+|| |..|.++|..+...|. .+|.++|.+-.  ++...+|.+....  ..........+++++++++|++
T Consensus       185 ~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          185 SLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             CTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            344579999999 9999999999888885 79999999741  1110123332211  1111111234678899999998


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      |=+.+ |   |.           +-+++++.+.   ++.||+-.+||.--..|   +.++++    ...+|+..
T Consensus       263 IG~Sa-p---gl-----------~T~EmVk~Ma---~~pIIfalsNPt~E~~p---e~a~~~----g~~i~atG  311 (398)
T 2a9f_A          263 IGVSA-P---GV-----------LKAEWISKMA---ARPVIFAMANPIPEIYP---DEALEA----GAYIVGTG  311 (398)
T ss_dssp             EECCS-T---TC-----------CCHHHHHTSC---SSCEEEECCSSSCSSCH---HHHHTT----TCSEEEES
T ss_pred             EecCC-C---CC-----------CCHHHHHhhC---CCCEEEECCCCCccCCH---HHHHHh----CCeEEEeC
Confidence            87643 3   32           1133444433   89999999999754333   334443    12477664

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.83  E-value=0.0059  Score=60.49  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=47.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||.....    ....     .. .+   .++++.+++||+|+++..
T Consensus       147 ~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~-----~~-~~---~~l~ell~~aDvV~l~~P  209 (343)
T 2yq5_A          147 YNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEP-----FL-TY---TDFDTVLKEADIVSLHTP  209 (343)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTT-----TC-EE---CCHHHHHHHCSEEEECCC
T ss_pred             CCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhc-----cc-cc---cCHHHHHhcCCEEEEcCC
Confidence            3579999998 9999999999998898  99999997522    1111     01 11   267788999999999853

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.82  E-value=0.0059  Score=61.77  Aligned_cols=84  Identities=20%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             HhhhhhhhhhhccCCC---CCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCce
Q 015172           70 RSTFARKAQSSEQRPQ---YALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV  146 (412)
Q Consensus        70 ~~~f~~~~~~~~~~~~---~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v  146 (412)
                      |++....+..+++.-.   ....--..++|+|||- |.||..+|..+...|.  +|+.||.....    .+     . ..
T Consensus       119 R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~-----~-~~  185 (404)
T 1sc6_A          119 RGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKL----PL-----G-NA  185 (404)
T ss_dssp             HTHHHHHHHHHHTCCC-----CCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCC----CC-----T-TC
T ss_pred             hChHHHHHHHHcCCccccCCCccccCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEEcCCchh----cc-----C-Cc
Confidence            6665554444433211   0111234579999998 9999999999998898  99999986421    00     0 01


Q ss_pred             eeecCCCcHHhhcCCCcEEEEcC
Q 015172          147 LDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus       147 ~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .   ...++++.+++||+|++..
T Consensus       186 ~---~~~~l~ell~~aDvV~l~~  205 (404)
T 1sc6_A          186 T---QVQHLSDLLNMSDVVSLHV  205 (404)
T ss_dssp             E---ECSCHHHHHHHCSEEEECC
T ss_pred             e---ecCCHHHHHhcCCEEEEcc
Confidence            1   1235778899999999984

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.80  E-value=0.0025  Score=62.75  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..||... ......++.       .. .   .++++.+++||+|+++.
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~-~---~~l~ell~~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGA--TLQYHEAKALDTQTEQRLG-------LR-Q---VACSELFASSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCC--EEEEECSSCCCHHHHHHHT-------EE-E---CCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCCCcHhHHHhcC-------ce-e---CCHHHHHhhCCEEEEcC
Confidence            4579999998 9999999998888888  999999975 221221111       11 1   25677899999999985

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.80  E-value=0.0038  Score=62.73  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhh------hhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGV------AADLSHCNTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~------~~dL~~~~~~~~v~~i~~t~d~~~al~~  161 (412)
                      +..||.|+|| |.+|..+|..+...|. .+|.++|.+-    .+..      ...+.+. +..    .....++++++++
T Consensus       191 ~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~----~~~~~~L~eav~~  263 (388)
T 1vl6_A          191 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP----ERLSGDLETALEG  263 (388)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT----TCCCSCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc----cCchhhHHHHHcc
Confidence            3579999999 9999999999988884 7899999982    1110      0111111 111    1123578899999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      +|++|=+.+ |   +.           +-+++++.+.   ++.+|+=.+||.--..|   +.++++    ...+|+..
T Consensus       264 ADVlIG~Sa-p---~l-----------~t~emVk~Ma---~~pIIfalSNPt~E~~p---~~a~~~----g~~i~atG  316 (388)
T 1vl6_A          264 ADFFIGVSR-G---NI-----------LKPEWIKKMS---RKPVIFALANPVPEIDP---ELAREA----GAFIVATG  316 (388)
T ss_dssp             CSEEEECSC-S---SC-----------SCHHHHTTSC---SSCEEEECCSSSCSSCH---HHHHHT----TCSEEEES
T ss_pred             CCEEEEeCC-C---Cc-----------cCHHHHHhcC---CCCEEEEcCCCCCCCCH---HHHHHh----cCeEEEeC
Confidence            999998854 3   21           1133443432   57788788999754333   344454    12677664

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.80  E-value=0.017  Score=53.12  Aligned_cols=100  Identities=16%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh-hcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS-ALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~-al~~aDiVIiaag~  171 (412)
                      .++|.|+|+ |.+|..++..|...|.   |+++|.++....  .+. ........+.+-...+++ .+++||.||.+.+.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~--~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKK--VLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLES   81 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHH--HHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHH--HHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC
Confidence            468999998 9999999998887774   889998763211  121 111110001110112222 38899999998421


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC-eEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPD-AFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-aiviv~TNPv~  214 (412)
                               |  ..|..    ++..+++..|+ -++..+.||..
T Consensus        82 ---------d--~~n~~----~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           82 ---------D--SETIH----CILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             ---------H--HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred             ---------c--HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence                     1  33433    34445556787 45555567765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.79  E-value=0.027  Score=52.98  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35688999999999999999999998  999999986

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.76  E-value=0.091  Score=49.51  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC--ceeeecCCCcHHh--hcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS--QVLDFTGPEELAS--ALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~--~v~~i~~t~d~~~--al~~aDiVIiaa  169 (412)
                      +.+.|.||++.+|..+|..|+..|.  .|++.|++..+.....+.......  ...+++-..+.++  ..-.-|++|..|
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNA   87 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNA   87 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECC
Confidence            4456669999999999999999998  999999986322222222221110  0011111111111  124579999999


Q ss_pred             CCCCC-CC--Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          170 GVPRK-PG--MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       170 g~p~k-~g--~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |.... +-  .+.   +..+..|+.    ..+..++.+.+....+.||+++
T Consensus        88 Gi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnis  138 (247)
T 4hp8_A           88 GIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIA  138 (247)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            97542 21  222   223445544    4555666666555556666664

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.76  E-value=0.015  Score=56.78  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|+|||+ |.+|..++..+....-+.+|.++|++.  ++..+.++....  ..+   . ..++++++ ++|+||.+..
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~---~-~~~~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISA---S-VQPAEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCE---E-ECCHHHHT-SSSEEEECCC
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceE---E-ECCHHHHh-CCCEEEEeeC
Confidence            468999998 999999998777632246999999986  333333333211  112   2 35788889 9999999853

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.74  E-value=0.0099  Score=58.31  Aligned_cols=76  Identities=21%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             CCceEEEEcCCCC-cHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCC--CcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGG-IGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP--EELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~-vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t--~d~~~al~~aDiVI  166 (412)
                      ..++|.|||+ |. ||..+|..|+..|-  .|.+.|++.  ....+..+...  ......+..+  .++++.+++||+||
T Consensus       176 ~gk~vvVIG~-G~iVG~~~A~~L~~~gA--tVtv~nR~~~~l~~ra~~la~~--~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          176 YGKKCIVINR-SEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLN--KHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCEEEEECC-CTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCC--CCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECC-CcchHHHHHHHHHHCCC--EEEEEeCchHHHHhHHHHHhhh--cccccccccccHhHHHHHhccCCEEE
Confidence            4579999999 75 69999999999886  899999874  11111122110  0111111112  57888999999999


Q ss_pred             EcCCCC
Q 015172          167 IPAGVP  172 (412)
Q Consensus       167 iaag~p  172 (412)
                      .+.|.|
T Consensus       251 sAtg~p  256 (320)
T 1edz_A          251 TGVPSE  256 (320)
T ss_dssp             ECCCCT
T ss_pred             ECCCCC
Confidence            999876

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.73  E-value=0.0083  Score=60.22  Aligned_cols=79  Identities=19%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCC-----ceeee----------cCCCcH
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPS-----QVLDF----------TGPEEL  155 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~-----~v~~i----------~~t~d~  155 (412)
                      +..||+|||+ |.||...+..+...|.  +|..+|++.. ...+.++.-.....     ....+          ....++
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence            4579999998 9999999998888897  8999999872 22333321000000     00000          012356


Q ss_pred             HhhcCCCcEEEEcCCCCC
Q 015172          156 ASALKGVNVVVIPAGVPR  173 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~  173 (412)
                      ++.++++|+||.++..|.
T Consensus       260 ~e~l~~aDIVI~tv~iPg  277 (381)
T 3p2y_A          260 EDAITKFDIVITTALVPG  277 (381)
T ss_dssp             HHHHTTCSEEEECCCCTT
T ss_pred             HHHHhcCCEEEECCCCCC
Confidence            778999999999987664

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.73  E-value=0.013  Score=54.46  Aligned_cols=35  Identities=6%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~   41 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSD   41 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCC
Confidence            45688899999999999999999998  999997765

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=95.72  E-value=0.014  Score=58.68  Aligned_cols=61  Identities=13%  Similarity=0.198  Sum_probs=46.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|+|||. |.||..+|..+...|.  +|..+|.....   .+  .   .  .    ...++++.+++||+|++...
T Consensus       119 gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~---~~--~---~--~----~~~sl~ell~~aDiV~l~~P  179 (381)
T 3oet_A          119 DRTIGIVGV-GNVGSRLQTRLEALGI--RTLLCDPPRAA---RG--D---E--G----DFRTLDELVQEADVLTFHTP  179 (381)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECHHHHH---TT--C---C--S----CBCCHHHHHHHCSEEEECCC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCChHH---hc--c---C--c----ccCCHHHHHhhCCEEEEcCc
Confidence            478999998 9999999999999998  99999974311   10  0   0  0    12467788999999999853

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.70  E-value=0.033  Score=54.92  Aligned_cols=74  Identities=20%  Similarity=0.363  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhh-hhhc-ccC--CCCceeeecCCCcHHhhc-CCCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVA-ADLS-HCN--TPSQVLDFTGPEELASAL-KGVN  163 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~-~dL~-~~~--~~~~v~~i~~t~d~~~al-~~aD  163 (412)
                      .|+||+|+||+|.+|..+...|...+.+ ++..+....   ..|.. .+.. +..  ....+...   .+.+ .+ +++|
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~---~~~~-~~~~~~D   77 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM---SDIS-EFSPGVD   77 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE---SSGG-GTCTTCS
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEecc---CCHH-HHhcCCC
Confidence            3689999999999999999988886543 777665433   22211 1111 111  11112211   0343 46 8999


Q ss_pred             EEEEcCC
Q 015172          164 VVVIPAG  170 (412)
Q Consensus       164 iVIiaag  170 (412)
                      +||++.+
T Consensus        78 vvf~a~p   84 (337)
T 3dr3_A           78 VVFLATA   84 (337)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999953

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.67  E-value=0.0047  Score=61.61  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCe-EEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSA-LHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-v~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  + |..+|.+.. .....++   .    ...   ..++++.+++||+|+++.
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~~  229 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNP--KELLYYDYQALPKDAEEKV---G----ARR---VENIEELVAQADIVTVNA  229 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCC--SEEEEECSSCCCHHHHHHT---T----EEE---CSSHHHHHHTCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCCccchhHHHhc---C----cEe---cCCHHHHHhcCCEEEECC
Confidence            4579999998 9999999998887786  7 999998652 1111111   0    111   235777889999999985

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.67  E-value=0.013  Score=54.50  Aligned_cols=115  Identities=14%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh---CCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHHhhc-----
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM---SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELASAL-----  159 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~---~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al-----  159 (412)
                      +++.|+||+|.+|..++..|+.   .|.  +|++.|++.  ......++........+.    +++-..+.++.+     
T Consensus         7 k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            5688889999999999999998   787  999999986  222222332210000011    111111111111     


Q ss_pred             ----CCCc--EEEEcCCCCCCCC------Cch---hhHHHhhHHHHHHHHHHHHhhC-C----CeEEEEEc
Q 015172          160 ----KGVN--VVVIPAGVPRKPG------MTR---DDLFNINANIVKTLVEAVADNC-P----DAFIHIIS  210 (412)
Q Consensus       160 ----~~aD--iVIiaag~p~k~g------~~r---~dl~~~N~~i~~~i~~~i~~~~-p----~aiviv~T  210 (412)
                          ...|  ++|..||.....+      .+.   ...+..|+.-...+++.+.++. .    .+.||++|
T Consensus        85 ~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~is  155 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS  155 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred             ccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEc
Confidence                2457  9999999743211      222   2345667666666666665554 2    25566655

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.62  E-value=0.015  Score=54.81  Aligned_cols=63  Identities=22%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||+|||+ |.||..++..+...|.  +|.++|.+..  ...+.++..       . +   +++++. +++|+||.+.+.+
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~l~~~~~~-------~-~---~~~~~~-~~~Divi~~tp~~  182 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTPQRALALAEEFGL-------R-A---VPLEKA-REARLLVNATRVG  182 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHTC-------E-E---CCGGGG-GGCSEEEECSSTT
T ss_pred             eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcc-------c-h---hhHhhc-cCCCEEEEccCCC
Confidence            8999998 9999999999999997  8999999862  222221111       1 1   355566 8999999997554

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.62  E-value=0.021  Score=54.90  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=51.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+++.|+|+ |.+|..+++.|+..|. .+|+++|++..  ...+.++........+... .-.++++.++++|+||.+..
T Consensus       127 ~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~-~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          127 LDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE-CSTTHHHHHHHSSEEEECSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEc-CHHHHHHHHhcCCEEEECCC
Confidence            468999998 9999999999999985 57999999863  3333333322111112222 12366677899999999854


Q ss_pred             C
Q 015172          171 V  171 (412)
Q Consensus       171 ~  171 (412)
                      .
T Consensus       204 ~  204 (283)
T 3jyo_A          204 M  204 (283)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=95.62  E-value=0.058  Score=53.00  Aligned_cols=120  Identities=19%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---------hhhhhhcccCCCC--ceeeecCCCcHHh----
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---------GVAADLSHCNTPS--QVLDFTGPEELAS----  157 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---------g~~~dL~~~~~~~--~v~~i~~t~d~~~----  157 (412)
                      .+.|.|+||+|.+|..++..|+..|.  .|++.|.+...         ....++.......  ...+++-..+.++    
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            45788999999999999999999998  99999987521         1222222211100  0011211112222    


Q ss_pred             ---hcCCCcEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEcCCCC
Q 015172          158 ---ALKGVNVVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIISNPVN  214 (412)
Q Consensus       158 ---al~~aDiVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~TNPv~  214 (412)
                         .+.+.|+||..||.....   ..+.   ...+..|+.-...+.+.+..+.   ..+.||++|-+..
T Consensus       123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence               234899999999975321   1222   2345566655555555543332   3466666665443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.011  Score=61.03  Aligned_cols=75  Identities=19%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +++||.|+|| |.+|..++..|+.. +.  +|+++|++..+..  ++... ......-++....++.++++++|+||.++
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~--~V~v~~R~~~ka~--~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDI--NVTVACRTLANAQ--ALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTE--EEEEEESSHHHHH--HHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCC--eEEEEECCHHHHH--HHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            3578999998 99999999999987 55  8999999863221  11111 11000001111124556778999999997


Q ss_pred             CC
Q 015172          170 GV  171 (412)
Q Consensus       170 g~  171 (412)
                      +.
T Consensus        97 p~   98 (467)
T 2axq_A           97 PY   98 (467)
T ss_dssp             CG
T ss_pred             ch
Confidence            64

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.60  E-value=0.012  Score=55.64  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=48.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||.|||+ |.||..+++.|+..|. .+|.++|++..+.  .+|.+.     +... ...++.+.++++|+||.+....
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~~G~-~~I~v~nR~~~ka--~~la~~-----~~~~-~~~~~~~~~~~aDiVInatp~g  177 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQMGV-KDIWVVNRTIERA--KALDFP-----VKIF-SLDQLDEVVKKAKSLFNTTSVG  177 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESCHHHH--HTCCSS-----CEEE-EGGGHHHHHHTCSEEEECSSTT
T ss_pred             eEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHH--HHHHHH-----cccC-CHHHHHhhhcCCCEEEECCCCC
Confidence            8999998 9999999999999885 6899999976332  222221     1111 1245666789999999986443

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.56  E-value=0.088  Score=49.17  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             ceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCc-h-hhhhhhhcccCCC-Cc-e-eeecCCCc-------HHhhc
Q 015172           94 FKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMN-V-KGVAADLSHCNTP-SQ-V-LDFTGPEE-------LASAL  159 (412)
Q Consensus        94 ~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~-~-~g~~~dL~~~~~~-~~-v-~~i~~t~d-------~~~al  159 (412)
                      +.+.|+||+|  .+|..+|..|+..|.  .|++.|+++ . +.....+.+.... .. + .+++...+       ..+.+
T Consensus         7 K~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            7 KTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             CEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4677889866  799999999999998  999999986 2 2222222222111 10 0 11111111       12345


Q ss_pred             CCCcEEEEcCCCCCCC-------CCchhhH---HHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKP-------GMTRDDL---FNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~-------g~~r~dl---~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      -..|++|..+|.....       ..++.++   +.-|......++.....+. ..+-||+++
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            6899999999864321       1223332   2334443444445555555 356666664

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.54  E-value=0.027  Score=54.13  Aligned_cols=95  Identities=18%  Similarity=0.272  Sum_probs=61.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||+ |.||..++..+...|.  +|..+|.+..+..  .+.+..    ...+. ..++++.++++|+||.+...
T Consensus       156 ~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~~--~~~~~g----~~~~~-~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          156 HGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHLA--RITEMG----LVPFH-TDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT----CEEEE-GGGHHHHSTTCSEEEECCSS
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCC----CeEEc-hhhHHHHhhCCCEEEECCCh
Confidence            3579999998 9999999999998897  9999999752211  111111    11111 13577789999999999643


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~  214 (412)
                          ++     +  |.    +   .++..-|++++++++ +|.+
T Consensus       226 ----~~-----i--~~----~---~~~~mk~g~~lin~a~g~~~  251 (300)
T 2rir_A          226 ----MI-----L--NQ----T---VLSSMTPKTLILDLASRPGG  251 (300)
T ss_dssp             ----CC-----B--CH----H---HHTTSCTTCEEEECSSTTCS
T ss_pred             ----hh-----h--CH----H---HHHhCCCCCEEEEEeCCCCC
Confidence                11     1  11    1   223333788888875 5655

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.54  E-value=0.024  Score=52.46  Aligned_cols=112  Identities=20%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-----hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-----VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-----~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+....     ...|+.+..   .+....  ....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~---~~~~~~--~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHH---HHHHHH--HHHHHHcCCCCEEEE
Confidence            45788999999999999999999998  999999875211     111111110   010000  011122457899999


Q ss_pred             cCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHhhCCCeEEEEEcCC
Q 015172          168 PAGVPRKP---GMTR---DDLFNINANIV----KTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       168 aag~p~k~---g~~r---~dl~~~N~~i~----~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      .||.....   ..+.   ...+..|+.-.    +.+.+.+.+. ..+.||+++-.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  141 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSV  141 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCH
Confidence            99975421   1222   23344555443    3444444332 34566666543

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.54  E-value=0.014  Score=55.00  Aligned_cols=110  Identities=22%  Similarity=0.249  Sum_probs=62.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-----hhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-----~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|.+......     .|+.+.   ..+....  ....+.+...|++|.
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~---~~~~~~~--~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREA---AYADGLP--GAVAAGLGRLDIVVN  100 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSH---HHHHHHH--HHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCH---HHHHHHH--HHHHHhcCCCCEEEE
Confidence            35788889999999999999999998  99999987521110     011110   0010000  112223468999999


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus       101 nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~is  152 (266)
T 3uxy_A          101 NAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVA  152 (266)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence            999754211   122   223445554    4444444444433 45565554

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.52  E-value=0.018  Score=53.53  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|.+.
T Consensus        10 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   43 (257)
T 3tl3_A           10 AVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG   43 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch
Confidence            5688999999999999999999998  999999864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.52  E-value=0.067  Score=50.54  Aligned_cols=114  Identities=14%  Similarity=0.242  Sum_probs=68.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCc-------HHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEE-------LASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d-------~~~al~~a  162 (412)
                      +.+.|.||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.......  ...+++-..+       ..+.+-.-
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4577779999999999999999998  999999987  333444444322110  0011111111       12345689


Q ss_pred             cEEEEcCCCCC--CCC--Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPR--KPG--MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~--k~g--~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||...  +|-  .+..   ..+..|+    -..+.+++.+.+.. .+.||+++
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis  143 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTA  143 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            99999999642  332  2222   2344554    45566666666554 45555554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.51  E-value=0.014  Score=57.01  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .++|+|||+ |.+|...+..+.. .+ +.+|+++|++.+...+.++.+.. ...+.   .. ++++++++||+||.+..
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~-~~~V~v~~r~~a~~la~~l~~~~-g~~~~---~~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFA-LEAILVHDPYASPEILERIGRRC-GVPAR---MA-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSC-CCEEEEECTTCCHHHHHHHHHHH-TSCEE---EC-CHHHHHHHCSEEEECCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCC-CcEEEEECCcHHHHHHHHHHHhc-CCeEE---Ee-CHHHHHhhCCEEEEccC
Confidence            468999998 9999999887776 45 57999999984333444443211 11121   23 67889999999999854

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.51  E-value=0.012  Score=58.46  Aligned_cols=75  Identities=23%  Similarity=0.280  Sum_probs=44.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC-----CCCeEEEEecCchhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP-----LVSALHLYDVMNVKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g-----l~~ev~L~Di~~~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ++||+|+||+|.+|..+...|..++     .+ +|+++-.....+...+-.|....  ..+. +. ..+. ++++++|+|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~-~~-~~~~-~~~~~~DvV   84 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRV-VE-PTEA-AVLGGHDAV   84 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCB-CE-ECCH-HHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceee-ec-cCCH-HHhcCCCEE
Confidence            4799999999999999999988877     32 67666432211111111111110  0111 11 1233 358899999


Q ss_pred             EEcCCC
Q 015172          166 VIPAGV  171 (412)
Q Consensus       166 Iiaag~  171 (412)
                      |++.|.
T Consensus        85 f~alg~   90 (352)
T 2nqt_A           85 FLALPH   90 (352)
T ss_dssp             EECCTT
T ss_pred             EECCCC
Confidence            999653

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.50  E-value=0.033  Score=57.96  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=76.0

Q ss_pred             CCCceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      -+.+||.|||. |..|.+ +|..|..+|.  +|...|.+........|....    +..+.| .+.++-..++|+||...
T Consensus        17 ~~~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~g----i~~~~G-~~~~~~~~~~d~vV~Sp   88 (524)
T 3hn7_A           17 FQGMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQAG----VTIEEG-YLIAHLQPAPDLVVVGN   88 (524)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHTT----CEEEES-CCGGGGCSCCSEEEECT
T ss_pred             ecCCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCC----CEEECC-CCHHHcCCCCCEEEECC
Confidence            34579999999 999986 6888899999  999999975221222343332    222334 23333236899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhh-CCCeEEEEEcCCCC--CcHHHHHHHHHHhCCCCCCCeEe
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADN-CPDAFIHIISNPVN--STVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~aiviv~TNPv~--~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |+|...-+ -......+++++.+. +.+.++ +++..+|-+|-+..  +++.++..+++.. |+++..++|
T Consensus        89 gi~~~~p~-l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~-G~~~~~~iG  156 (524)
T 3hn7_A           89 AMKRGMDV-IEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA-GIDAGFLIG  156 (524)
T ss_dssp             TCCTTSHH-HHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             CcCCCCHH-HHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEEC
Confidence            88742211 011112333443332 222222 23434444554443  4455667777766 466655555

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.50  E-value=0.0069  Score=61.09  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|+.+|.... .....++   .    ...   ..++++.+++||+|+++.
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~---G----~~~---~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKEL---N----LTW---HATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHH---T----CEE---CSSHHHHGGGCSEEEECS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhc---C----cee---cCCHHHHHhcCCEEEEec
Confidence            4579999998 9999999999888887  9999998752 2111111   1    111   135677899999999985

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.45  E-value=0.023  Score=58.13  Aligned_cols=90  Identities=18%  Similarity=0.131  Sum_probs=59.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..++|+|+|. |.||..+|..+...|.  +|..+|+++... .+.  .+ .    .. +   .++++.++.||+||.+.|
T Consensus       246 ~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~--~~-G----~~-v---v~LeElL~~ADIVv~atg  311 (464)
T 3n58_A          246 AGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA--MD-G----FE-V---VTLDDAASTADIVVTTTG  311 (464)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH--HT-T----CE-E---CCHHHHGGGCSEEEECCS
T ss_pred             cCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH--hc-C----ce-e---ccHHHHHhhCCEEEECCC
Confidence            3578999998 9999999999998898  999999986321 111  11 1    11 1   246678999999999854


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      .+   +.       .|    .+..   +..-|+++|++++..
T Consensus       312 t~---~l-------I~----~e~l---~~MK~GAILINvGRg  336 (464)
T 3n58_A          312 NK---DV-------IT----IDHM---RKMKDMCIVGNIGHF  336 (464)
T ss_dssp             SS---SS-------BC----HHHH---HHSCTTEEEEECSSS
T ss_pred             Cc---cc-------cC----HHHH---hcCCCCeEEEEcCCC
Confidence            32   11       11    2222   223389999988754

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.45  E-value=0.007  Score=59.49  Aligned_cols=62  Identities=24%  Similarity=0.329  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.||..+|..+...|.  +|..+|......    +..    . . .+   .++++.+++||+|+++.
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~----~~~----~-~-~~---~~l~ell~~aDvV~~~~  206 (331)
T 1xdw_A          145 RNCTVGVVGL-GRIGRVAAQIFHGMGA--TVIGEDVFEIKG----IED----Y-C-TQ---VSLDEVLEKSDIITIHA  206 (331)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCS----CTT----T-C-EE---CCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCccHH----HHh----c-c-cc---CCHHHHHhhCCEEEEec
Confidence            3579999998 9999999999998898  999999875221    110    1 1 11   25777889999999985

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.41  E-value=0.021  Score=52.66  Aligned_cols=109  Identities=15%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhh-----cCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASA-----LKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~a-----l~~aDiV  165 (412)
                      +++|.|+||+|.+|..++..|+. .|.  .|++.|.++. .........+       +++-..+.++.     ....|++
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~-------Dv~~~~~v~~~~~~~~~~~id~l   74 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKA-------DLTKQQDITNVLDIIKNVSFDGI   74 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEEC-------CTTCHHHHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEec-------CcCCHHHHHHHHHHHHhCCCCEE
Confidence            46789999999999999999998 676  8999998752 1111111111       11111111111     2378999


Q ss_pred             EEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          166 VIPAGVPRK-P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k-~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      |..||.... +  ..+.   ...+..|+.-...+++.+.++. ..+.||+++
T Consensus        75 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~s  126 (244)
T 4e4y_A           75 FLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNG  126 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEEC
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEEC
Confidence            999997532 1  2222   2345667766677777776655 345555554

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.41  E-value=0.037  Score=53.35  Aligned_cols=56  Identities=14%  Similarity=0.380  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..+++.|||+++.+|..+|..|+..|.  .|.+.+..                       |.++++.+++||+||.+.|.
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gA--tVtv~h~~-----------------------t~~L~~~~~~ADIVI~Avg~  213 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLNAGA--TVSVCHIK-----------------------TKDLSLYTRQADLIIVAAGC  213 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSCHHHHHTTCSEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHhhcCCEEEECCCC
Confidence            357999999955689999999999987  78877531                       24677789999999999886


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus       214 p  214 (285)
T 3p2o_A          214 V  214 (285)
T ss_dssp             T
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	9e-47
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	5e-43
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	8e-43
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	2e-39
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	3e-34
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	4e-34
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	1e-33
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	1e-31
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	1e-31
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	5e-31
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	5e-31
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	8e-31
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	8e-31
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	2e-30
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	2e-28
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	8e-28
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	1e-27
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-27
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-26
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	9e-26
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	1e-25
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	9e-25
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	2e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	9e-24
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	1e-23
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-22
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	2e-21
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	3e-21
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	1e-20
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-20
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-20
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	1e-19
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	3e-19
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	5e-19
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	5e-19
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	1e-18
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	2e-18
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	6e-18
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-17
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-17
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	7e-17
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	9e-17
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	1e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	4e-16
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	4e-16
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	1e-13
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	8e-10
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	1e-04

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  155 bits (392), Expect = 9e-47
 Identities = 99/143 (69%), Positives = 113/143 (79%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
           L   LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL  A A +CPDA I IISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 215 STVPIAAEVLKQKGVYDPKKLFG 237
           ST+PI AEV K+ GVY+P K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  146 bits (369), Expect = 5e-43
 Identities = 94/170 (55%), Positives = 118/170 (69%), Gaps = 3/170 (1%)

Query: 238 VTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTV 297
           VTTLD++R+NTFVA+ K  +  +V+VPV+GGH+G+TILPLLS  +P VSFT++EV DLT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLS-QVPGVSFTEQEVADLTK 59

Query: 298 RIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFF 357
           RIQNAGTEVVEAKAG GSATLSM  AAARF  S +RAL G+  V EC +VE +     FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 358 ASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407
           +  + LG+NGVE      +  L+ +EQ ALE +   LK  I  G  F  K
Sbjct: 120 SQPLLLGKNGVEERK--SIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  145 bits (367), Expect = 8e-43
 Identities = 89/169 (52%), Positives = 119/169 (70%), Gaps = 2/169 (1%)

Query: 238 VTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTV 297
           VTTLD+VRAN FVA+ K L    V VPV+GGHAG TI+PL+S+  P V F  +++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 298 RIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFF 357
           RIQ AGTEVV+AKAGAGSATLSMAYA ARFV S + A++G   V EC FV+S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 358 ASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQ 406
           ++ + LG+ G+E  +   +  ++ +E+K +    PELKASI+KG  F +
Sbjct: 121 STPLLLGKKGIEKNL--GIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  136 bits (343), Expect = 2e-39
 Identities = 90/145 (62%), Positives = 104/145 (71%), Gaps = 3/145 (2%)

Query: 95  KVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGP 152
           KVAVLGAAGGIGQ LALL+K   P  S L LYD+     GVA DLSH  T  ++  F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           E+   AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA  CP A I II+NP
Sbjct: 61  EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFG 237
           VN+TV IAAEVLK+ GVYD  KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  122 bits (307), Expect = 3e-34
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 7/146 (4%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+  +GA G +G   A    ++  V  + L D+      G A DL+H             
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
               S LKG  ++V+ AG+ RKPGMTR DL + NA I+K + + + +N P++ I +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGV 238
           ++    I      ++      ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  121 bits (305), Expect = 4e-34
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+ V+GA G +G   A  +    L   L L DV+     G A D+               
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
               +     ++V+I AG+PRKPGMTR+DL   NA IVK + + +  +  +  I ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGV 238
           ++    +A      +     +++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  122 bits (306), Expect = 1e-33
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPL-----VSALHLYDVMNVKGVAADLSHCNTPSQVL-- 147
            +AV GAAG I   L   +    +       AL L            ++     S     
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 148 -DFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAF 205
            + +   +     + V+  ++    PR PGM R  L +IN  I     +A+      +  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 206 IHIISNPVNSTVPIAAE 222
           + ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  115 bits (289), Expect = 1e-31
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPE 153
           K++++GA G +G   A  +    L   + L  V    +G A DL   +            
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
              +     +V+V+ +G PRKPGM+R+DL  +NA+I +  +   A   P+A I +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 214 NSTVPIAAEVLKQKGVYDPKKLFG 237
           ++   +AAEV      +  +++ G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  115 bits (289), Expect = 1e-31
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+AV+GA G +G  LA       +   + L D+   +      D+ H ++    +   G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++     +  ++VVI AG  +KPG +R +L     NI+K ++  +    P+A   +I+NP
Sbjct: 62  DD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFG 237
           V+    IA  V ++       ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  114 bits (286), Expect = 5e-31
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 95  KVAVLGAAGGIGQPLALLIK-----MSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-- 147
           +V V GAAG I   L   I             L L D+  + GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 148 -DFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAF 205
            D    ++   A K ++V ++   +PR+ GM R DL   N  I K    A+         
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 206 IHIISNPVNSTVPIAAE 222
           + ++ NP N+    A++
Sbjct: 125 VIVVGNPANTNCLTASK 141

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  113 bits (284), Expect = 5e-31
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK----GVAADLSHC-NTPSQVLDF 149
           KV+V+GAAG +G      I +  +   +   D+ + +    G AAD +H     S     
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61

Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
            G  E      G +VVVI AG+PR+PG TR DL   NA I++ +  ++ ++  D      
Sbjct: 62  QGGYE---DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT 118

Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
           SNPV+    +    L + G    +++ G
Sbjct: 119 SNPVD----LLNRHLYEAGDRSREQVIG 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (283), Expect = 8e-31
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           K+ ++G  G +G   A  + M      + L DV   +     L   +             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
             + LKG +VV++ AGVP+KPG TR  L   NA ++K +   V+   PD+ + +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 215 STVPIAAEVLKQKGVYDPKKLFG 237
               +      ++   DP+K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  113 bits (284), Expect = 8e-31
 Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSA--------LHLYDVMNVKGVAADLSHCNTPSQV 146
           +VAV GAAG IG  L   I    ++          L +   M                 +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAF 205
                 ++   A K  +  ++    PRK GM R DL  +N  I      A+A+    D  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 206 IHIISNPVNSTVPIAAEVLKQKGVYDPKK 234
           + ++ NP N+   IA    K     +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KVA++GA G +G   A  + +    + L L DV   K +   +   +    +   +    
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
             S +K  +V+V+ AG  RKPG TR DL   N  I K + + +        I ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 215 STVPIAAEVLKQKGVYDPKKLFG 237
               +     ++       K+ G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  107 bits (267), Expect = 2e-28
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+ ++G+ G IG  +A LI    L   + L+D++     G A D SH N  +        
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62

Query: 153 EELASALKGVNVVVIPAGVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPDAFIH 207
                 L G +VV++ AG  + PG +     RDDL  +N  I+  +   +  NCP+AFI 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122

Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV 238
           +++NPV+  V +      Q       K+ G+
Sbjct: 123 VVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 8e-28
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ V+G  G +G   A+ I +  L   L L D     ++G A DL H +           
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST-PKIVF 78

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
            +  +      +V+I AG     G TR DL   N  I+K +V  V  N PD  I +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFG 237
           V+    +  ++      +   ++ G
Sbjct: 139 VDILTYVVWKISG----FPVGRVIG 159

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  104 bits (261), Expect = 1e-27
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
           KV ++G  G +G   A  +    +     + DV+  +     L   +  +          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
             S  K  ++VVI AG P+KPG +R DL N N NI+ ++V+ V D+  D    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 215 STVPIAAEVLKQKGVYDPKKLFG 237
               I      +   +  +++ G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score =  104 bits (259), Expect = 3e-27
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPS-QVLDFTG 151
           KVA++G+ G IG  +  L  +  L   + LYDV+     G A DLSH  +     +    
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66

Query: 152 PEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFI 206
                +AL G + V++ AG+ + PG      +R+DL   N+ I++ + + +   CP  FI
Sbjct: 67  EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 126

Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
            +++NP++  V +  E            + G
Sbjct: 127 IVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM----NVKGVAADLSHCNTPSQVLD-- 148
           KV ++GA+G +G   ALL+   P +  L L         ++G+  D+      ++     
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
           +   +E    +   +VV+I +GVPRK GM+R DL   NA IV    + +A+ C      +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
           I+NPV+     A    K    ++  ++FG
Sbjct: 121 ITNPVDVMTYKALVDSK----FERNQVFG 145

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 99.8 bits (248), Expect = 9e-26
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT--PSQVLDFT 150
           +V V+GA G +G      +    +   + L D       G A D +H     P  V  + 
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
           G  +     +  ++VVI AG  +KPG TR DL + N  I +++VE+V  +       + +
Sbjct: 67  GDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFG 237
           NPV+       +          +++ G
Sbjct: 124 NPVDILTYATWKFSG----LPHERVIG 146

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD----EEVGDLT 296
           LD  R  +F+A +  + + D++  V+GGH    +  +   T+  +  +D    E +  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 297 VRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPF 356
            R +N G E+VE     GSA  + A +    VES +            +  +    +  F
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYG-IDKTF 121

Query: 357 FASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
               VKLGRNGVE +   +   L + +   L+     +  + + 
Sbjct: 122 VGVPVKLGRNGVEQIYEIN---LDQADLDLLQKSAKIVDENCKM 162

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 97.5 bits (242), Expect = 9e-25
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 9/164 (5%)

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD----EEVGDLT 296
           LD  R  TF+A +  + + DV   ++GGH    +      T+  +  ++    + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 297 VRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPF 356
            R +  G E+V      GSA  + A A A+ VE+ L+       V   +  +  L ++ F
Sbjct: 64  ERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF 122

Query: 357 FASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
               V LG  GVE ++      L E E   L A    ++A+++ 
Sbjct: 123 G-VPVILGAGGVEKILELP---LNEEEMALLNASAKAVRATLDT 162

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 2e-24
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
           K+ V+G  G +G   A+ I    L   L L DV+  K  G   DL H +   Q       
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
           ++  S      +VV+ AGV ++ G +R +L   N N+ K ++  +    PD  I ++SNP
Sbjct: 81  KD-YSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFG 237
           V+    +  ++          ++ G
Sbjct: 140 VDILTYVTWKLSG----LPKHRVIG 160

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 94.0 bits (233), Expect = 9e-24
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 12/149 (8%)

Query: 95  KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
           K+ ++G  G +G  +A  +    +       D     VK    D        +       
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 153 EELASALKGVNVVVIPAGVPR----KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
            +  +AL   +VV+   G  +     P   R       +++V+++   + ++     + +
Sbjct: 62  ND-WAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
           ISNPV+    +   + +    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 94.8 bits (235), Expect = 1e-23
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 15/178 (8%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVR 298
           T LD  RA   +A K  +   DV   ++ G+   T  P ++     +   +  V +    
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 299 IQNAGTEVVEAKAGAG---------SATLSMAYAAARFVESSLRALDGDGDVYECVFV-- 347
                 E +      G         S+ +S A A    V            V   +    
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 348 -ESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAF 404
               + +   ++  V +     + +    L  + ++ ++ ++    EL    E    F
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVE--GLP-INDFSREKMDLTAKELAEEKETAFEF 175

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 91.0 bits (225), Expect = 3e-22
 Identities = 33/174 (18%), Positives = 70/174 (40%), Gaps = 15/174 (8%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVR 298
           T+LD  R    +A+  N+    V   ++G H G T  P+ S          E V      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 299 IQNAGTEVV--------EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN 350
            ++   ++         E     G+    +A A AR  ++ L   D +  +   V+++  
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILN--DENAVLPLSVYMDGQ 117

Query: 351 LTEL-PFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
                 +  +   + RNG+++++      LT++E+++++    +LK  +    A
Sbjct: 118 YGINDLYIGTPAVINRNGIQNILEIP---LTDHEEESMQKSASQLKKVLTDAFA 168

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 88.7 bits (219), Expect = 2e-21
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------- 289
           T LD  R    +AQ+  + + +V   + G H    +    S T+  V  +D         
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 290 ---EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVF 346
              ++  ++   ++NA  +++  K     A   +  +    +E+ L   +    V   + 
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 347 VESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
               ++++        L R GV + I++    +++ E  AL+     LK +  +
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINTP---VSDKELAALKRSAETLKETAAQ 167

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 87.8 bits (217), Expect = 3e-21
 Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 30/166 (18%)

Query: 95  KVAVLGAAGGIGQPLA----LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFT 150
           ++AV+G  G    P      L I     +  +  YD+   K                   
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVA------------ 198
             +    A+     V+         G   D+   +   ++      V             
Sbjct: 61  ISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIV 120

Query: 199 -------DNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
                      +A I   +NP         E ++     + +K  G
Sbjct: 121 EEYVDTVRKTSNATIVNFTNPSG----HITEFVRN--YLEYEKFIG 160

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 86.1 bits (212), Expect = 1e-20
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 17/177 (9%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------- 289
           T LD  R  T +AQ        V V V+G H    +       +  +   +         
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 290 -EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE 348
            + + +   + + A  E++E K     A           +    + +       E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 349 SNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405
            +L      +  V LG++GVE ++  +   L E E +A       LK +I +  A  
Sbjct: 122 KDL----CISVPVTLGKHGVERILELN---LNEEELEAFRKSASILKNAINEITAEE 171

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 86.0 bits (212), Expect = 2e-20
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 10/172 (5%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPS---VSFTDEEVGDL 295
           T+LD  R    + ++ N+    VD  ++G H G +     S        V    +E G  
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 296 TVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLT--- 352
              +      V        +   +  Y     +    +A+  D +    V    +     
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL 119

Query: 353 ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAF 404
              +  +   +G  G++ +I S    L+  E K ++     LK  +  G+A 
Sbjct: 120 NDIYIGTPAIIGGTGLKQIIESP---LSADELKKMQDSAATLKKVLNDGLAE 168

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 9/171 (5%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD-----EEVG 293
             LD  R    + ++  +        V+G H            + S+         ++  
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 294 DLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTE 353
           D     ++      E     G  + ++  + A   E+ ++ L     V   V     + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 354 LPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAF 404
             F +    L  +G+ +++   ++ L   E++ L+     L   I+K + F
Sbjct: 123 NVFLSLPCVLNDHGISNIV--KMK-LKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 5/164 (3%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVR 298
           T LD  R    V +  +L    V    +G H G +     S                 + 
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFA 358
           +     E  +      +     +Y  A       +A+  D      V    +     + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 359 SRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGV 402
               +GR+GV +  + D   LT  EQ+ L   +  ++   ++ V
Sbjct: 120 YPAIIGRDGVLAETTLD---LTTDEQEKLLQSRDYIQQRFDEIV 160

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 81.8 bits (201), Expect = 3e-19
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 6/165 (3%)

Query: 236 FGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDL 295
           FG   LD  R    ++++ +  + +V+  ++G H G   +P+ SK     +  +    + 
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 296 TVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP 355
              + +     ++     G+     A   A  VE+ L            +  E    +  
Sbjct: 59  EQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-T 117

Query: 356 FFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
            F   V LG NGVE ++  D   L +YEQ  +     +L    +K
Sbjct: 118 AFGVPVSLGSNGVEEIVEWD---LDDYEQDLMADAAEKLSDQYDK 159

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.8 bits (201), Expect = 5e-19
 Identities = 24/170 (14%), Positives = 49/170 (28%), Gaps = 11/170 (6%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------E 290
             LD  R    + +K  +        V+G H   ++       +  V+           +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 291 EVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN 350
                    +       E     G  + ++  +      S L+ L     V   V     
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 351 LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
           + E  F +    LG +G+   +  +   +T  E+  L+     L    + 
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKVN---MTAEEEGLLKKSADTLWNMQKN 169

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.4 bits (200), Expect = 5e-19
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 8/166 (4%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVR 298
           T LD +R    +A+   + + +V   ++G H G +++PLLS T        +      + 
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV----ESNLTEL 354
           I     +V               +  A  + + +R +  +      +      E +    
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 355 PFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
                 VK+GR+G+E ++S +   L + E  A       +K   E+
Sbjct: 122 VCIGVPVKIGRDGIEEVVSIE---LDKDEIIAFRKSAEIIKKYCEE 164

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 1e-18
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------- 289
             LD  R    +A+K  +        ++G H   ++       +  VS  +         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 290 --EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV 347
             E   ++   +  +  EV++ K     A   +  + A  +ES L+ L     V   V  
Sbjct: 63  DSENWKEVHKMVVESAYEVIKLKGYTNWA---IGLSVADLIESMLKNLSRIHPVSTMVKG 119

Query: 348 ESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399
              +    F +    L   G+ S+I  + + L + E   L+     L    +
Sbjct: 120 MYGIENEVFLSLPCILNARGLTSVI--NQK-LKDDEVAQLKKSADTLWDIQK 168

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 79.8 bits (196), Expect = 2e-18
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 9/167 (5%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKT----MPSVSFTDEEVGD 294
           T LD  RA   +A+K    +  +    V G+   T+ P L        P++   D E  +
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 295 LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV--ESNLT 352
                  A       +A   S+  S A AA   +            V   V    E  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 353 ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399
           E   ++  V         +    L+ + E+ +K +E    EL   +E
Sbjct: 122 EGIVYSFPVTAKDGAYRVVE--GLE-INEFARKRMEITAQELLDEME 165

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 78.7 bits (193), Expect = 6e-18
 Identities = 22/173 (12%), Positives = 60/173 (34%), Gaps = 18/173 (10%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------- 289
           T LD +R    +++K  + + +V   ++G H    +       +   +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 290 --EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV 347
             E+   +   ++ AG  +++ K                 +  +   +   G V   ++ 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 348 ESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
             +       +    +   GV+ ++  +   LT  E++AL     ++K  + +
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQFN---LTPEEEEALRFSAEQVKKVLNE 166

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 22/172 (12%), Positives = 53/172 (30%), Gaps = 15/172 (8%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------- 289
           T LD  R    + +  ++   +V   ++G H    +       +  +             
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
           ++  +            +  K   G+    +A   AR   + L   +    V   +    
Sbjct: 61  QKDLERIFVNVRDAAYQIIEK--KGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLY 118

Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKG 401
              ++ +      + RNG+  +I  +   L + E+         LK+ + + 
Sbjct: 119 GERDV-YIGVPAVINRNGIREVIEIE---LNDDEKNRFHHSAATLKSVLARA 166

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 95  KVAVLGAAGGIGQPLAL--LIKMSPL--VSALHLYDVMN--VKGVAADLSH---CNTPSQ 145
           K+A +G  G    P  +  LIK      V  L L D+     K                 
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIV--------------- 190
            ++     +   AL G + V     V       +D+   +   ++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 191 -----KTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237
                  ++  + + CPDA++   +NP      +  E + +      +K+ G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLR--YTKQEKVVG 167

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 75.6 bits (185), Expect = 7e-17
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD---------EE 291
           LD  R   +++QK N+   DV+  +VG H    +L     T+  +   +          E
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 292 VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNL 351
           +  +  R  N   E+V   A    A  +     A      L+ +     + E  +  S++
Sbjct: 63  LEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI 122

Query: 352 TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK 395
               F  + V LG NGVE +I      L   E+   +    E K
Sbjct: 123 ----FGGTPVVLGANGVEQVIELQ---LNSEEKAKFDEAIAETK 159

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.2 bits (184), Expect = 9e-17
 Identities = 25/170 (14%), Positives = 44/170 (25%), Gaps = 34/170 (20%)

Query: 93  SFKVAVLGAAGGIGQPLAL---LIKMSPL-VSALHLYDVM--NVKGVAADLSHC-NTPSQ 145
           S K+ ++GA G     L L   L K   L  S + L D+    +  +             
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNI-------------------- 185
            L F     L   +   + V+  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 186 ------NANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGV 229
                        +   +    P A+    +NP+     +    +  K V
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPIKAV 170

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 74.9 bits (183), Expect = 1e-16
 Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 9/165 (5%)

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGD------ 294
           LD  RA + +A K    +  ++   V G+   T+           +   + + D      
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 295 LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTEL 354
             +         +    G  SA  +   A     +  L        +         + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 355 PFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399
             F   V       + +    L  +  + Q+ +     EL     
Sbjct: 123 VIFGFPVTTENGEYKIVQ--GLS-IDAFSQERINVTLNELLEEQN 164

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 73.5 bits (180), Expect = 4e-16
 Identities = 29/162 (17%), Positives = 48/162 (29%), Gaps = 32/162 (19%)

Query: 93  SFKVAVLGAAGGIGQP---LALLIKMSPL-VSALHLYDV--MNVKGVAADLSHC-NTPSQ 145
           SF + + G  G    P   L LL  +    +  L LYD        +A          + 
Sbjct: 3   SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 61

Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVA------- 198
            ++F    +   A   V+ V+    V +      D+   +   +V               
Sbjct: 62  DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 199 -------------DNCPDAFIHIISNPVNSTVPIAAEVLKQK 227
                           PDA++   SNP      I AE  ++ 
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEATRRL 159

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 73.7 bits (180), Expect = 4e-16
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 12/167 (7%)

Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD--------EEV 292
           LD  R   +VA   ++   DV   V+G H    +  +   T+               E+ 
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 293 GDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLT 352
            +            +    G GSA  + A +A     S L               E  L 
Sbjct: 64  LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK 123

Query: 353 ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399
           +  F      +G  G+E +I  +   L E E+K  +    ++ A  +
Sbjct: 124 D-MFIGLPAVIGGAGIERVIELE---LNEEEKKQFQKSVDDVMALNK 166

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 66.6 bits (162), Expect = 1e-13
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEV------ 292
           T LD  RA   +A K  +    V    + G+   T +P             E +      
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 293 -GDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES-- 349
             + T+ +Q  G  +++      S+  S A + A  ++S +            V+     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 350 -NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA 396
             + E   F+   +   +G    +++D+    ++  + ++  + EL A
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYE-LATDVS-NDDFLWERIKKSEAELLA 164

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.0 bits (132), Expect = 8e-10
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 14/162 (8%)

Query: 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVR 298
             LD  R    +              ++G H G ++    S          E V +    
Sbjct: 2   NQLDSQRLKERLYNA--GARNIRRAWIIGEH-GDSMFVAKSLADFDGEVDWEAVENDV-- 56

Query: 299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFA 358
            +    EV++     G+     A A  R V++ +            +  E  +  +    
Sbjct: 57  -RFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 359 SRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
              KLG+NG E         L++ E + L      L+  +E+
Sbjct: 112 VPAKLGKNGAEVADIK----LSDEEIEKLRNSAKILRERLEE 149

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 19/171 (11%), Positives = 53/171 (30%), Gaps = 12/171 (7%)

Query: 95  KVAVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
           ++ + G AG +G  L   L+     V+ +  +     + V   + H N      +    +
Sbjct: 3   RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHEN-----FELINHD 57

Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKT--LVEAVADNCPDAFIHIISN 211
            +      V+ +   A     P    + +  +  N + T  ++   A       +   ++
Sbjct: 58  VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGL-AKRVGARLLLASTS 116

Query: 212 PV---NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLI 259
            V       P + +         P+  +               +++ +++ 
Sbjct: 117 EVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.98
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.97
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.97
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.97
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.96
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.96
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.96
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.95
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.95
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.95
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.95
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.95
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.95
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.95
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.95
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.95
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.94
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.94
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.94
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.94
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.93
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.93
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.91
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.9
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.89
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.87
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.59
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.57
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.46
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.72
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.59
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.58
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.42
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.26
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.24
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.04
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.94
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.92
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.91
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.88
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.82
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.79
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.75
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.69
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.68
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	97.59
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	97.56
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	97.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.5
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	97.49
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.48
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.47
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.41
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.4
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.39
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.38
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	97.36
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.32
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.29
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.17
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.13
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.11
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.1
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.06
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.04
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.0
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.99
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.97
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.85
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.85
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.79
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.77
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	96.7
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.69
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	96.67
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.62
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.61
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.58
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.57
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.56
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.56
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.54
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.53
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	96.5
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.48
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.48
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.41
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.36
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.35
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.33
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.3
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.28
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.26
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	96.23
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.21
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.2
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.19
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.16
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.12
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.1
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.09
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.08
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.07
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.04
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.02
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.01
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.99
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.99
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.98
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.9
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.9
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.89
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.89
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.88
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.83
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	95.82
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.79
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.74
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.74
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.74
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.72
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.7
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.69
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.69
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.67
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	95.64
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.64
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.63
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.63
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.62
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.6
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.58
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.58
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.57
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.57
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	95.53
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.53
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.52
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.45
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.44
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.43
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.41
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.39
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.36
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.17
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.16
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.16
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.1
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.1
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.07
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.06
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.06
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.06
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.05
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.01
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.97
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.96
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.83
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.76
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.71
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.69
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.48
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.47
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.43
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.43
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.42
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.32
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.3
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.12
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.12
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.04
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.03
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.01
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.01
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	94.01
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.98
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.96
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.83
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.74
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.71
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.69
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.69
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.64
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.52
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.51
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.5
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.46
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	93.46
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.45
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.37
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.33
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	93.32
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.29
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.22
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.03
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.95
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.94
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.88
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.84
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.71
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.69
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.56
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.37
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.18
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.16
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.07
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	91.91
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.85
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.75
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	91.74
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.66
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.62
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.58
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.54
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.53
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.4
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.37
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.36
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	91.35
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	91.32
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.26
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.22
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.11
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.03
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.98
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.97
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.8
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.77
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	90.54
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.54
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	90.37
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.35
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.2
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	90.1
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.82
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	89.78
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.71
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.51
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	89.45
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.36
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	89.31
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	89.26
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	89.19
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.14
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	89.14
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.95
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	88.87
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.7
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	88.11
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.97
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.85
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.72
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.55
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.22
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.79
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.05
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.66
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	85.08
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.67
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	84.59
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.34
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	84.19
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.8
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	83.66
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.61
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	83.11
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	83.05
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	82.92
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	82.33
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	82.06
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	82.02
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	81.79
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	81.37
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	81.28
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	81.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.85
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	80.45
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	80.15

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.4e-34  Score=248.47  Aligned_cols=143  Identities=69%  Similarity=1.094  Sum_probs=133.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k  174 (412)
                      ||+||||+|.||+++|+.++.+++++||+|+|+++.+++++|+.|.........+..+++++++++|||+||+++|.||+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999999999999999987655455555566777789999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |||+|.|++..|.+++++++++|.+++|+++++++|||+|+|++++.+++++.++|||+||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999888999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=2.5e-33  Score=245.19  Aligned_cols=140  Identities=28%  Similarity=0.484  Sum_probs=127.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.||+|||+ |.||+++|+.++.+++++||+|+|+++  ++++++||.|.........+..+++|+ +++|||+||+++|
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~-~~~daDvVVitaG   78 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICRDADMVVITAG   78 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH-HhhCCcEEEEecc
Confidence            369999998 999999999999999999999999998  789999999975332223444567886 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|++||++|+|++..|++++++++++|.+++|+++++++|||+|    ++++++++.+|+|++||||+
T Consensus        79 ~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvD----vmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          79 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEEC
T ss_pred             cccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchH----HHHHHHHHHHCCChhhccCC
Confidence            99999999999999999999999999999999999999999999    67889999999999999997

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-33  Score=244.76  Aligned_cols=143  Identities=62%  Similarity=0.945  Sum_probs=132.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+|||++|.||+++|+.|+.+ ++++||+|+|+++ .+|+++||.|..+......+.++++|+ +++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~-~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHH-HHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCcc-ccCCCCEEEECCCc
Confidence            79999996699999999998754 8889999999987 679999999987766666677788886 79999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      ||+||++|.|++..|.+++++++++|.+++|+++++++|||+|+|++++.+++++.+++|++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999889999999999999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-32  Score=246.84  Aligned_cols=168  Identities=53%  Similarity=0.827  Sum_probs=151.6

Q ss_pred             ccccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          238 VTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       238 lt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +|.|||+|||++||++||++|++|+++|+||||+++++|+||.+.+...+..++++++.+++++.+++|++.|.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999989999999998877778889999999999999999999997667888


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      +++++++++++..++.+..+...+.++++...++.+++|||+||+||++|++++++  +++|+++|+++|++|+++|++.
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~--l~~L~~~E~~~l~~s~~~lk~~  158 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLG--IGKISPFEEKMIAEAIPELKAS  158 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECC--CCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEec--CCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999987655566777776655555677999999999999999999  3579999999999999999999


Q ss_pred             HHHHHHHHhh
Q 015172          398 IEKGVAFAQK  407 (412)
Q Consensus       398 i~~~~~~~~~  407 (412)
                      |+++++|+|.
T Consensus       159 I~~g~~fi~~  168 (169)
T d1mlda2         159 IKKGEEFVKN  168 (169)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.98  E-value=9.9e-33  Score=241.08  Aligned_cols=139  Identities=29%  Similarity=0.541  Sum_probs=126.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||+ |.||+++|+.++.+++++||+|+|+++  ++|+++||.|..... ....+.+++||+ +++|||+||+++|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~-~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS-LLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG-GGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH-HhccccEEEEecc
Confidence            79999998 999999999999999999999999998  789999999975221 122345567886 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|++||++|.|++.+|+++++++++.+.+++|+++++++|||+|    ++++++++.+|+||+||||+
T Consensus        79 ~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEEC
T ss_pred             ccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChH----HHHHHHHHHHCCChhcEecC
Confidence            99999999999999999999999999999999999999999999    66888899999999999996

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.6e-32  Score=240.99  Aligned_cols=167  Identities=56%  Similarity=0.791  Sum_probs=149.5

Q ss_pred             ccccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          238 VTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       238 lt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      +|.||++||+++||+++|++|++|+++|+||||+.+++|++|++.+ ..++..+++++.+++++.+.++++.|.|.|++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999998888888787655 347888899999999999999999887778999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS  397 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~  397 (412)
                      +++|+++++++++|+.+..+...+..++++..+.++++|||+||+||++|++++++  +++|+++|+++|++|+++|++.
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~--l~~L~~~E~~~l~~s~~~lk~~  157 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS--IGTLSAFEQNALEGMLDTLKKD  157 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEee--CCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999998766666666667766666678999999999999999998  3579999999999999999999


Q ss_pred             HHHHHHHHhh
Q 015172          398 IEKGVAFAQK  407 (412)
Q Consensus       398 i~~~~~~~~~  407 (412)
                      |+++.+|++|
T Consensus       158 I~~~~~fi~~  167 (167)
T d2cmda2         158 IALGQEFVNK  167 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999999875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.3e-32  Score=241.83  Aligned_cols=140  Identities=24%  Similarity=0.317  Sum_probs=126.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..||+|||| |.||+++|+.++++++++||+|+|+++  ++++++||.|............+.||+ +++|||+||+++|
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~-~l~daDvvvitag   83 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD-DCRDADLVVICAG   83 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-GTTTCSEEEECCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH-HhccceeEEEecc
Confidence            469999998 999999999999999999999999988  789999999986432222223457886 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|++||++|+|++.+|++++++++++|.+++|+++++++|||+|    ++++++++.+|+||+||||+
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd----~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEEC
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccH----HHHHHHHHHHCcChhheecC
Confidence            99999999999999999999999999999999999999999999    67888999999999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=5.2e-32  Score=240.79  Aligned_cols=139  Identities=28%  Similarity=0.434  Sum_probs=126.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||+|||+ |.||+++|+.++.+|+++||+|+|+++  ++|+++||.|.........+....||+ ++++||+||+++|
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~-~~~~adiVVitAg   97 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS-VTANSKIVVVTAG   97 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG-GGTTCSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh-hcccccEEEEecC
Confidence            469999998 999999999999999999999999987  789999999976432233344567886 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      .|++||++|+|++..|+++++++++.|.+++|+++++++|||+|    ++++++++.+|+||+||||
T Consensus        98 ~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvD----v~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          98 VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             CccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999    6788889999999999998

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=1.1e-31  Score=234.43  Aligned_cols=137  Identities=31%  Similarity=0.439  Sum_probs=122.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCC-CCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNT-PSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~-~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      .||+||||+|.||+++|+.++++++++||+|+|++.    ++++++||.|... ..... + .+.+|+ +++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~-i-~~~~~~-~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTR-V-RQGGYE-DTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCE-E-EECCGG-GGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCce-E-eeCCHH-HhhhcCEEEEe
Confidence            399999966999999999999999999999999864    5789999999542 22222 2 245786 69999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      +|.||+|||+|+|++..|+++++++++.|.+++|+++++++|||+|    ++++++++.+|+|++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvD----vmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHH----HHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999    6788899999999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=9.1e-32  Score=234.35  Aligned_cols=137  Identities=32%  Similarity=0.571  Sum_probs=123.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |||+|||| |.||+++|+.++.+++++||+|+|+++  ++++++|+.|.... .... +. ++||+ +++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~-~~-~~~~~-~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRAN-IY-AGDYA-DLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCE-EE-ECCGG-GGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccc-cc-CCcHH-HhcCCCEEEEecc
Confidence            79999998 999999999999999999999999997  78899999996521 2222 22 46786 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|++||++|.|++.+|.++++++++.|.++||+++++++|||+|    ++++++++.+|+||+||||.
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd----~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999    67888899999999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.97  E-value=1.6e-31  Score=233.37  Aligned_cols=137  Identities=30%  Similarity=0.434  Sum_probs=116.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +||+|||| |.||+++|+.++.+++++||+|+|+++  ++++++||.|.... .... +. +.+|+ +++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-~~-~~~~~-~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS-LY-AGDYS-DVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEE-EC---CGG-GGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCee-Ee-eCcHH-HhCCCceEEEecc
Confidence            59999998 999999999999999999999999988  68999999997532 2232 22 45786 7999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .+++||++|.|++.+|++++++++++|.+++|+++++++|||+|    ++++++++.+|+|++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvd----v~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHH----HHHHHHHHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999    67888999999999999997

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.97  E-value=5.9e-32  Score=237.20  Aligned_cols=139  Identities=18%  Similarity=0.284  Sum_probs=118.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      +||+|||| |.||+++|+.++++++++||+|+|+++  ++++++||.|............++||+ +++|||+||+++|.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~-~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA-ALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG-GGTTCSEEEECCSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH-HhccccEEEEeccc
Confidence            69999998 999999999999999999999999998  689999999975322121112356886 79999999999999


Q ss_pred             CC----CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          172 PR----KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       172 p~----k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      ||    +||++|.|++..|+++++++++.|+++||++|++++|||+|    ++++++++.+|+|++||||.
T Consensus        80 ~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             GGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHH----HHHHHHHHHhCCCccceeCc
Confidence            87    78999999999999999999999999999999999999999    67888999999999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=1.6e-31  Score=233.18  Aligned_cols=138  Identities=32%  Similarity=0.555  Sum_probs=123.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC--CCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT--PSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~--~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||| |.||+++++.++.+++++||+|+|+++  ++++++|+.|...  .... .+..++|++ +++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~-~i~~~~~~~-~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDT-KVTGSNDYA-DTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCC-EEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccc-eEEecCCHH-HhcCCeEEEEEE
Confidence            79999998 999999999999999999999999998  6788889988642  2222 234457776 799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      |.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|    ++++++++.+|+|++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd----~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHH----HHHHHHHHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChH----HHHHHHHHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999    56777888889999999996

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=2.2e-31  Score=233.52  Aligned_cols=139  Identities=29%  Similarity=0.444  Sum_probs=115.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .|||+|||+ |.||+++|+.|+++++++||+|+|+++  ++++++||.|.........+ .++||+ +++|||+||+++|
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~-~~~d~~-~~~~adivvitag   81 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI-YSGEYS-DCKDADLVVITAG   81 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE-EECCGG-GGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceE-eeccHH-HhccccEEEEecc
Confidence            479999998 999999999999999999999999998  78999999997532211122 246887 6999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|++||++|+|++..|++++++++++|.+++|+++++++|||+|    ++++++++.+|+||+||||+
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvd----v~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccH----HHHHHHHHHHCcCccceecC
Confidence            99999999999999999999999999999999999999999999    67888899999999999997

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=8.9e-31  Score=229.35  Aligned_cols=138  Identities=30%  Similarity=0.536  Sum_probs=122.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCC--CCceee-ecCCCcHHhhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNT--PSQVLD-FTGPEELASALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~--~~~v~~-i~~t~d~~~al~~aDiVI  166 (412)
                      |||+||||+|.||+++|+.++.+++++||+|+|+++    ++++++||.|...  ...+.. +.++.||+ +++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~-~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR-IIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-GGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-HhccceEEE
Confidence            799999977999999999999999999999999986    4688999999643  232332 33456786 899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      ++||.||+||++|.|++..|+++++++++.+.+++|++++ ++|||+|    +|++++++.+|+|++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD----~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHH----HHHHHHHHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchH----HHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999999875 5799999    6788889999999999998

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.6e-31  Score=235.14  Aligned_cols=139  Identities=29%  Similarity=0.416  Sum_probs=125.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      ..||+|||+ |.||+++||.|+.+++++||+|+|+++  ++|+++||.|.........+..+.||+ ++++||+||+++|
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~-~~~~adivvitag   96 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN-VSANSKLVIITAG   96 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG-GGTTEEEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh-hhccccEEEEecc
Confidence            469999998 999999999999999999999999987  789999999986443223333457886 6999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      .|++||++|+|++..|+++++++++.|.+++|+++++++|||+|    ++++++++.+|+||+||||
T Consensus        97 ~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvD----v~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          97 ARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             CCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHH----HHHHHHHHHHCSCTTTEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHH----HHHHHHHHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999    6678889999999999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=4e-30  Score=227.32  Aligned_cols=141  Identities=30%  Similarity=0.577  Sum_probs=124.4

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC--CCceeeecCCCcHHhhcCCCcEEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT--PSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~--~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ++.+||+|||| |.||+++|+.+++.++ .||+|+|+++  ++++++|+.|...  .... .+.++++++++++|||+||
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~adiVv   81 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNV-SVRAEYSYEAALTGADCVI   81 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCC-CEEEECSHHHHHTTCSEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCee-EEeccCchhhhhcCCCeEE
Confidence            45689999998 9999999999999997 4899999997  7899999999642  2212 2334677877899999999


Q ss_pred             EcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          167 IPAGVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       167 iaag~p~k~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      +++|.|++||+     +|.|++.+|.++++++++++.++||+++++++|||+|    ++++++++.+|+|++|||||
T Consensus        82 itag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd----~lt~~~~~~sg~p~~rViG~  154 (154)
T d1pzga1          82 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGM  154 (154)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             EecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHhCcChhcEecC
Confidence            99999999995     8999999999999999999999999999999999999    66778889999999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=3.6e-30  Score=224.68  Aligned_cols=136  Identities=29%  Similarity=0.524  Sum_probs=113.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC--CCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT--PSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~--~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +||+|||+ |.||+++|+.++++++. +++|+|+++  ++++++|+.|...  +... .+++++||+ +++|+|+||+++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~-~i~~~~d~~-~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDV-RVTGTNNYA-DTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCC-CEEEESCGG-GGTTCSEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCC-EEEecCcHH-HhcCCCEEEEee
Confidence            69999998 99999999999999975 799999987  6889999999852  2212 345578897 699999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG  237 (412)
                      |.|++||++|.|++..|++++++++++|.+++|+++++++|||+|    ++++++++.+|+|++||||
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvD----v~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    5677788999999999998

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=6.1e-30  Score=225.21  Aligned_cols=138  Identities=33%  Similarity=0.618  Sum_probs=122.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ..||+|||+ |.||+++|+.++++++ +||+|+|+++  ++++++|+.|....  ... .+..+.+|+ +++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~v~~~~~~~-~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNC-KVSGSNTYD-DLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCC-CEEEECCGG-GGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCc-EEEeccccc-ccCCCcEEEEe
Confidence            469999998 9999999999999986 6999999987  78999999997521  222 223356776 79999999999


Q ss_pred             CCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          169 AGVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       169 ag~p~k~g~~-----r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      +|.|++||++     |+|++..|.++++++++.|.++||+++++++|||+|    ++++++++.+|||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchH----HHHHHHHHHHCCCchheecc
Confidence            9999999976     999999999999999999999999999999999999    67888899999999999997

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.96  E-value=2.7e-29  Score=224.77  Aligned_cols=158  Identities=19%  Similarity=0.321  Sum_probs=139.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCC----------CCChHHHHHHHHHHhhccchhhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSV----------SFTDEEVGDLTVRIQNAGTEVVE  308 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~----------~~~~~~~~~l~~~v~~~g~eii~  308 (412)
                      |.||++||+++||+++|++|++|+++|||+|| +++||+||++++..          .+..+++.++.++++..++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHG-DSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSS-SSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCC-CcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            67999999999999999999999999999996 79999999987321          25677789999999999999999


Q ss_pred             cccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          309 AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       309 ~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                      +|   |++.|++|.++.+++++++.+   +..+++++ ++.+.| .+++|||+||+||++|++++++   ++|+++|+++
T Consensus        80 ~k---~s~~~a~a~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~---l~Ls~~E~~~  150 (171)
T d1ez4a2          80 LK---GATFYGIGTALMRISKAILRD---ENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIE---SPLSADELKK  150 (171)
T ss_dssp             HH---SCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHH
T ss_pred             hh---hhHhHHHHHHHHHHHHHHhcc---CCceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeC---CCCCHHHHHH
Confidence            88   899999999999999999998   45677765 455443 3567999999999999999999   6899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 015172          387 LEALKPELKASIEKGVAFAQ  406 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~~~~~  406 (412)
                      |++|+++|++.++++++.++
T Consensus       151 l~~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         151 MQDSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998765

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.6e-29  Score=222.57  Aligned_cols=145  Identities=19%  Similarity=0.247  Sum_probs=124.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCe-eeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT  317 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V-~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~  317 (412)
                      |.|||+|||++|++..   +.++ +++|+|||| +++||+||.+....   ..++++|.+++++.+++|+++|   |+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHG-ds~vp~~S~~~i~g---~~~~~~i~~~v~~~g~eIi~~k---G~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHG-DSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSS-TTCEECGGGCCCBS---CCCHHHHHHHHHTTHHHHHHHH---SSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCC-CccccccccccccC---ccchhHhHHHHHHHHHHhhhhc---ccee
Confidence            5799999999998765   4455 899999995 79999999876432   2357889999999999999998   8999


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172          318 LSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK  395 (412)
Q Consensus       318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~  395 (412)
                      |+||+++++|+++|++|   ++.++|||. ++++| .+++|+|+||+||++|++ +++   ++|+++|+++|++|++.||
T Consensus        72 ~gia~a~~~iv~aIl~d---~~~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~---l~L~~~E~~~l~~Sa~~ik  144 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVED---TGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VAD---IKLSDEEIEKLRNSAKILR  144 (152)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECC---CCCCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhc---CCCceeeeEEeccccCCCCEEEEeEEEECCCceE-EEc---CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999   478999984 56555 245799999999999985 888   6899999999999999999


Q ss_pred             HHHHH
Q 015172          396 ASIEK  400 (412)
Q Consensus       396 ~~i~~  400 (412)
                      +.++.
T Consensus       145 ~~i~~  149 (152)
T d1ojua2         145 ERLEE  149 (152)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98864

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=5.8e-29  Score=222.61  Aligned_cols=152  Identities=18%  Similarity=0.318  Sum_probs=132.2

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC---------CCChHHHHHHHHHHhhccch
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV---------SFTDEEVGDLTVRIQNAGTE  305 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~---------~~~~~~~~~l~~~v~~~g~e  305 (412)
                      |.||++||+++||+++|+++++|+++|||+|| +++||+||+++    |..         .++.+.++++.+++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHG-DSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSS-TTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            67999999999999999999999999999996 69999999975    221         24556678999999999999


Q ss_pred             hhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHH
Q 015172          306 VVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYE  383 (412)
Q Consensus       306 ii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E  383 (412)
                      |+++|   |++.|++|.++++++++|+.+   ...+++++. +.+.+ ..+.|||+||+||++|++++++   ++|+++|
T Consensus        80 i~~~k---g~t~~~~a~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~---l~L~~~E  150 (170)
T d1llda2          80 IINGK---GATNYAIGMSGVDIIEAVLHD---TNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTIN---TPVSDKE  150 (170)
T ss_dssp             HHTSC---CSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSC---CCCCHHH
T ss_pred             HHhhh---ccchhhhHHHHHHHHHHHHcC---CCceeeeeccccCccCCCCeeEeeccEEcCCeeEEEec---CCCCHHH
Confidence            99988   889999999999999999998   456777764 44333 3467999999999999999998   6899999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015172          384 QKALEALKPELKASIEK  400 (412)
Q Consensus       384 ~~~L~~sa~~L~~~i~~  400 (412)
                      +++|++|++.||+.+++
T Consensus       151 ~~~l~~sa~~lk~~~~~  167 (170)
T d1llda2         151 LAALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=7e-29  Score=224.25  Aligned_cols=162  Identities=19%  Similarity=0.235  Sum_probs=135.7

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEE-cccCCcccccccccCC----CCCC-------CChHHHHHHHHHHhhccchh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVV-GGHAGITILPLLSKTM----PSVS-------FTDEEVGDLTVRIQNAGTEV  306 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~Vi-G~hgg~~~vp~~S~~~----p~~~-------~~~~~~~~l~~~v~~~g~ei  306 (412)
                      |.||++|||++||+++|++|++|+++|| |+| |+++||+||+++    |..+       ++....+++.+++++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeH-G~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcC-CCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999999877 666 589999999987    3322       22334578999999999999


Q ss_pred             hhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCC---CCCCCceeeeEEEcCCceEEeecCCCCCCCHH
Q 015172          307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESN---LTELPFFASRVKLGRNGVESLISSDLQGLTEY  382 (412)
Q Consensus       307 i~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~---i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~  382 (412)
                      ++.|.  ++++|++|.|+++++++|+.+.+. ..++++++. +++   +++++|||+||+||++||+++.+   ++||++
T Consensus        80 ~~~~~--~ss~~~~a~a~~~~~~~i~~~~~~-~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~---l~L~~~  153 (179)
T d5mdha2          80 IKARK--LSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG---LPINDF  153 (179)
T ss_dssp             HHHHS--SCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCC---CCCCHH
T ss_pred             hhccC--cchHHHHHHHHHHHHHHHHhhccc-CCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeC---CCCCHH
Confidence            99773  688899999999999999998652 334454433 332   46778999999999999999998   689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 015172          383 EQKALEALKPELKASIEKGVAFAQK  407 (412)
Q Consensus       383 E~~~L~~sa~~L~~~i~~~~~~~~~  407 (412)
                      |+++|++|+++|+++++.+.+++..
T Consensus       154 E~~~l~~Sa~~L~~~~~~~~~~l~~  178 (179)
T d5mdha2         154 SREKMDLTAKELAEEKETAFEFLSS  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998864

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=3.7e-29  Score=222.95  Aligned_cols=153  Identities=27%  Similarity=0.404  Sum_probs=133.3

Q ss_pred             ccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCC
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      .||++||+++||++||++|.+|+++|||+|| ++++|+||++.    |..+ ++++.++++.++++++|++|++.+ ++|
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHG-DEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSG-GGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            5999999999999999999999999999997 69999999986    3333 466778999999999999998764 348


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      +++|++|.++.+|+++|+.+   ++.++|++.. .++| .++.|||+||+||++|++++++   ++||++|+++|++|++
T Consensus        81 s~~~a~a~a~~~i~~~i~~~---~~~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~---l~L~~~E~~~l~~s~~  154 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKD---KKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILE---LPLNEEEMALLNASAK  154 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCC---CCceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeC---CCCCHHHHHHHHHHHH
Confidence            99999999999999999998   4568887754 3333 2356999999999999999999   6899999999999999


Q ss_pred             HHHHHHHH
Q 015172          393 ELKASIEK  400 (412)
Q Consensus       393 ~L~~~i~~  400 (412)
                      +|++.++.
T Consensus       155 ~lk~~i~~  162 (164)
T d1uxja2         155 AVRATLDT  162 (164)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.96  E-value=4.3e-29  Score=222.36  Aligned_cols=153  Identities=27%  Similarity=0.403  Sum_probs=133.7

Q ss_pred             ccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCC----CC-CChHHHHHHHHHHhhccchhhhcccCCC
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPS----VS-FTDEEVGDLTVRIQNAGTEVVEAKAGAG  314 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~----~~-~~~~~~~~l~~~v~~~g~eii~~K~g~g  314 (412)
                      .||++||+++||+++|++|++|+++|||+|| ++++|+||+++..    .+ ++++.++++.++++++|++|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHG-DAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSG-GGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            5999999999999999999999999999997 6999999998732    22 567778999999999999999854 448


Q ss_pred             chhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          315 SATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       315 st~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      +++|++|.++.+++++++.+   ++.++|++++..+ + .++.|||+||++|++|++++++   ++|+++|+++|++|++
T Consensus        81 sa~~a~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~---l~Ls~~E~~~l~~sa~  154 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLD---RKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYE---INLDQADLDLLQKSAK  154 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheecc---CCCEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEec---CCCCHHHHHHHHHHHH
Confidence            99999999999999999998   4678888765433 3 2456999999999999999999   6899999999999999


Q ss_pred             HHHHHHHH
Q 015172          393 ELKASIEK  400 (412)
Q Consensus       393 ~L~~~i~~  400 (412)
                      .|++.+++
T Consensus       155 ~l~~~i~~  162 (163)
T d1guza2         155 IVDENCKM  162 (163)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99988863

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=6.2e-29  Score=220.84  Aligned_cols=154  Identities=19%  Similarity=0.219  Sum_probs=133.7

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC-C--hHHHHHHHHHHhhccchhhhccc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF-T--DEEVGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~-~--~~~~~~l~~~v~~~g~eii~~K~  311 (412)
                      |.||++||+++||+++|++|++|+++|||+|| +++||+||+++    |..++ .  +.+++++.+++++++++|++.| 
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k-   79 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHG-NSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK-   79 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTT-TTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH-
Confidence            67999999999999999999999999999996 69999999986    43333 2  2346899999999999999998 


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172          312 GAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK  391 (412)
Q Consensus       312 g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa  391 (412)
                        |++.|++|.++.+++++++.+   ...+++++.+..+  +++|||+||+||++||+++++   ++|+++|+++|++|+
T Consensus        80 --g~~~~~~a~~~~~~~~~~~~~---~~~~~~~s~~~~~--~~~~~s~Pv~ig~~Gv~~v~~---l~Ls~~E~~~l~~s~  149 (163)
T d1hyha2          80 --GYTSYGVATSAIRIAKAVMAD---AHAELVVSNRRDD--MGMYLSYPAIIGRDGVLAETT---LDLTTDEQEKLLQSR  149 (163)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTT--TCSEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHHH
T ss_pred             --HhHHHhHHHHhhHHHHHhcCC---ccceeeeceecCC--cceEEEeEEEEcCCeEEEEec---CCCCHHHHHHHHHHH
Confidence              789999999999999999998   3567777654332  456999999999999999999   689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 015172          392 PELKASIEKGVAF  404 (412)
Q Consensus       392 ~~L~~~i~~~~~~  404 (412)
                      ++|++.++++++.
T Consensus       150 ~~l~~~~~~~~~~  162 (163)
T d1hyha2         150 DYIQQRFDEIVDT  162 (163)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.95  E-value=1.8e-28  Score=220.16  Aligned_cols=159  Identities=25%  Similarity=0.313  Sum_probs=132.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCCC----------CCChHHHHHHHHHHhhccchhhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSV----------SFTDEEVGDLTVRIQNAGTEVVE  308 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~----------~~~~~~~~~l~~~v~~~g~eii~  308 (412)
                      |.||++||+++||+++|++|++|+++|||+|| ++++|+||++....          .....++.+.....+.++.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHG-DCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCC-CccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            78999999999999999999999999999996 79999999986321          13445567777777778877776


Q ss_pred             cccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          309 AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       309 ~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                      .+ ++|+++|++|+++++++++|+.+   ++.+++++++..+ |  + ++|||+||+||++|++++++   ++||++|++
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~---~~~~~~~s~~~~~~yGi~-~v~~s~Pv~ig~~Gi~~v~~---l~l~~~E~~  152 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLND---EKRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVIE---LELNEEEKK  152 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECC---CCCCHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhccc---CCceEEeeeccccccCCC-CceeeeeeEEcCCcEEEEeC---CCCCHHHHH
Confidence            54 34899999999999999999998   4678898866543 3  4 47999999999999999998   689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 015172          386 ALEALKPELKASIEKGVAFAQK  407 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~~~~~~~  407 (412)
                      +|++|+++|++.. +.+..++.
T Consensus       153 ~l~~s~~~l~~~~-~~v~~l~a  173 (174)
T d1pzga2         153 QFQKSVDDVMALN-KAVAALQA  173 (174)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHCC
T ss_pred             HHHHHHHHHHHHH-HHHHhccC
Confidence            9999999999855 45665653

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.95  E-value=1.1e-28  Score=220.63  Aligned_cols=152  Identities=21%  Similarity=0.314  Sum_probs=131.5

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC--------ChHHHHHHHHHHhhccchh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF--------TDEEVGDLTVRIQNAGTEV  306 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~--------~~~~~~~l~~~v~~~g~ei  306 (412)
                      |.||++||+++||+++|++|++|+++|||+|| ++++|+||++.    |..++        +.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg-~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHG-DSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSS-SSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCC-CCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            67999999999999999999999999999997 69999999985    33332        3345688999999999999


Q ss_pred             hhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHH
Q 015172          307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQ  384 (412)
Q Consensus       307 i~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~  384 (412)
                      +.+|   +++.|++|.++++++++++.+   ++.++|++. +++.| ..+.|||+||++|++|++++++   ++||++|+
T Consensus        80 ~~~~---~s~~~a~a~~~~~~~~~i~~~---~~~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~---l~Ls~~E~  150 (169)
T d1y6ja2          80 IKNK---GATYYGIAVSINTIVETLLKN---QNTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQ---FNLTPEEE  150 (169)
T ss_dssp             HHHT---SCCCHHHHHHHHHHHHHHHHT---CCCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCC---CCCCHHHH
T ss_pred             hhhh---hhhhhHHHHHHHHHHHHhccC---CCCceeeeeeeccccCCcccceeeeeEEcCCcEEEEec---CCCCHHHH
Confidence            9987   799999999999999999998   467888874 45444 1356999999999999999999   68999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          385 KALEALKPELKASIEK  400 (412)
Q Consensus       385 ~~L~~sa~~L~~~i~~  400 (412)
                      ++|++|++.|++.+++
T Consensus       151 ~~l~~s~~~lk~~~~~  166 (169)
T d1y6ja2         151 EALRFSAEQVKKVLNE  166 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999876

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4.5e-28  Score=216.88  Aligned_cols=154  Identities=27%  Similarity=0.346  Sum_probs=133.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCC-----------CCCChHHHHHHHHHHhhccchhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPS-----------VSFTDEEVGDLTVRIQNAGTEVV  307 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~-----------~~~~~~~~~~l~~~v~~~g~eii  307 (412)
                      |+||++||+++||+++|++|++|+++|||+|| ++++|+||+++..           ..++.+.++++.++++..+++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHG-DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCC-CCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            67999999999999999999999999999996 7999999998621           12566678899999999999999


Q ss_pred             hcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          308 EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       308 ~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                      ..|   +++.|++|.++++++.+++.+   ++.+.+++.. .+.+ .+++|||+||+||++|++++++   ++|+++|++
T Consensus        81 ~~~---~~~~~~~a~a~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~---l~Ls~~E~~  151 (172)
T d1a5za2          81 ERK---GATHYAIALAVADIVESIFFD---EKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILE---LNLNEEELE  151 (172)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECC---CCCCHHHHH
T ss_pred             ecc---ccchhhHHHHHHHHHHHHHhh---cccceeeecccccccccCCeeEeeeEEEcCCceEEEeC---CCCCHHHHH
Confidence            988   789999999999999999998   4567777644 3333 3467999999999999999999   689999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015172          386 ALEALKPELKASIEKGV  402 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~~  402 (412)
                      +|++|+++||+.+++..
T Consensus       152 ~l~~sa~~lk~~i~~l~  168 (172)
T d1a5za2         152 AFRKSASILKNAINEIT  168 (172)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998743

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.95  E-value=4.1e-28  Score=214.14  Aligned_cols=154  Identities=27%  Similarity=0.434  Sum_probs=134.4

Q ss_pred             EeccccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCC---CCCChHHHHHHHHHHhhccchhhhcccC
Q 015172          236 FGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPS---VSFTDEEVGDLTVRIQNAGTEVVEAKAG  312 (412)
Q Consensus       236 iGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~---~~~~~~~~~~l~~~v~~~g~eii~~K~g  312 (412)
                      || |+||++|++++||+++|+++++|+++|||+|| ++++|+||++.+.   ..+..++++++.++++..++++++.|  
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--   76 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHG-DAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK--   76 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCC-CceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhh--
Confidence            46 88999999999999999999999999999997 6999999998632   23567788899999999999999887  


Q ss_pred             CCchhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHH
Q 015172          313 AGSATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL  390 (412)
Q Consensus       313 ~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~s  390 (412)
                       +++.+++|.++++++.+++.+.   ..+++++. +.+.+ ..+.|||+||++|++|++++++   ++|||+|+++|++|
T Consensus        77 -~~s~~~~a~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~---l~l~~~E~~~L~~s  149 (161)
T d1o6za2          77 -GATEWGPARGVAHMVEAILHDT---GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVE---WDLDDYEQDLMADA  149 (161)
T ss_dssp             -SSCCHHHHHHHHHHHHHHHTTC---CCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHHHH
T ss_pred             -hhhhhHHHHhhHhhhHhhhhcc---ccceeecccccccccccCceeeeeeEEcCCCEEEEeC---CCCCHHHHHHHHHH
Confidence             7899999999999999999883   55676664 44332 4567999999999999999998   68999999999999


Q ss_pred             HHHHHHHHHH
Q 015172          391 KPELKASIEK  400 (412)
Q Consensus       391 a~~L~~~i~~  400 (412)
                      +++|++.+++
T Consensus       150 ~~~L~~~~~~  159 (161)
T d1o6za2         150 AEKLSDQYDK  159 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999976

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.95  E-value=8.1e-28  Score=216.65  Aligned_cols=143  Identities=24%  Similarity=0.320  Sum_probs=122.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKG  161 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~  161 (412)
                      +++.||+|+||+|.+|+++++.|++.++++     +|+|+|++.    +++.++|+.|+..+.....+.+ ++..++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-IDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-ccchhhccC
Confidence            345799999988999999999999876654     899999986    5788899999877653333333 444468999


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEcCCCCCcHHHHHHHHHH-hCCCCCCCeEec
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHIISNPVNSTVPIAAEVLKQ-KGVYDPKKLFGV  238 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~TNPv~~~~pI~t~i~~~-~sg~~~~kviGl  238 (412)
                      +|+||+++|.||+|||+|.|++..|.+|++++++.|.+++| +++|+++|||+|    ++++++++ ++++|++||+||
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd----~~t~ia~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN----TNALICLKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH----HHHHHHHHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999995 899999999999    56776766 689999999996

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.95  E-value=8.7e-28  Score=218.81  Aligned_cols=162  Identities=20%  Similarity=0.217  Sum_probs=133.8

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeee-EEcccCCcccccccccCC----CCCC-CChHHH--HHHHHHHhhccchhhhcc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVP-VVGGHAGITILPLLSKTM----PSVS-FTDEEV--GDLTVRIQNAGTEVVEAK  310 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~-ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~--~~l~~~v~~~g~eii~~K  310 (412)
                      |.||++|||++||+++|++|++|+.+ |+|+|| +++||+||+++    |..+ +.+++|  +++.++++++++++++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHG-ds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCC-CcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            67999999999999999999999865 668886 79999999987    3334 344444  889999999999999998


Q ss_pred             cCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       311 ~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                      .  +++++++|.|+++++++|+.+.+ ...+++++++ +++ |  +++.|||+||+||++|+++++. | ++||++|+++
T Consensus        80 g--~s~~~s~A~A~~~~~~ai~~~~~-~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~-~-l~L~~~e~~~  154 (188)
T d7mdha2          80 G--RSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELAT-D-VSNDDFLWER  154 (188)
T ss_dssp             S--SCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECC-C-CCCCHHHHHH
T ss_pred             c--ccchhhHHHHHHHHHHHHHcCCC-CCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeC-C-CCCCHHHHHH
Confidence            2  56777899999999999999864 2345666544 343 4  5678999999999999999986 3 7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 015172          387 LEALKPELKASIEKGVAFAQ  406 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~~~~~  406 (412)
                      |++|+++|+++.+....++.
T Consensus       155 l~~S~~eL~~e~~~v~~Llg  174 (188)
T d7mdha2         155 IKKSEAELLAEKKCVAHLTG  174 (188)
T ss_dssp             HHHHHHHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            99999999998877666554

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=3.5e-28  Score=216.82  Aligned_cols=154  Identities=22%  Similarity=0.351  Sum_probs=126.8

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCCC---hHHHHHHHHHHhhccchhhhccc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSFT---DEEVGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~~---~~~~~~l~~~v~~~g~eii~~K~  311 (412)
                      |.||++||+++||++||+++++|+++|||+|| ++++|+||+++    |..++.   ...++++.+++++++++++..| 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-   80 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHG-DSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK-   80 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSS-TTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhc-
Confidence            78999999999999999999999999999996 79999999986    333322   2235788899999999999887 


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHH
Q 015172          312 GAGSATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALE  388 (412)
Q Consensus       312 g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~  388 (412)
                        +++.+++|.+++.++++++.+   ++.+++++ ++.+++  .++.|||+||++|++||+++++   ++||++|+++|+
T Consensus        81 --~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~---l~Ls~~E~~~l~  152 (168)
T d1hyea2          81 --GGSEFGPAAAILNVVRCIVNN---EKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVS---IELDKDEIIAFR  152 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTT---CCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHHH
T ss_pred             --cCccccchhhhhHHHHhhhcc---CCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEec---CCCCHHHHHHHH
Confidence              788999999999999999998   35666654 455553  4567999999999999999999   689999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 015172          389 ALKPELKASIEKGV  402 (412)
Q Consensus       389 ~sa~~L~~~i~~~~  402 (412)
                      +|++.|++.+++..
T Consensus       153 ~Sa~~lk~~~~~~k  166 (168)
T d1hyea2         153 KSAEIIKKYCEEVK  166 (168)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=4.8e-28  Score=213.67  Aligned_cols=142  Identities=25%  Similarity=0.400  Sum_probs=118.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +++||+||||+|.||+++++.|+..+++.     +++|+|+++    +++..+|+.++..+. ...+..+++.+++++|+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCc
Confidence            46899999987999999999999877653     899999987    344455566765544 33333344555689999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC-eEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD-AFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV  238 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl  238 (412)
                      |+||+++|.|++|||+|.|++.+|+++++++++.|.+++|+ +++|++|||+|    ++++++++.+ |+|++||+||
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD----~mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPAN----TNCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH----HHHHHHHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHH----HHHHHHHHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999975 57888999999    6788888877 9999999986

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=9.7e-28  Score=213.76  Aligned_cols=151  Identities=27%  Similarity=0.318  Sum_probs=131.6

Q ss_pred             ccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCCC----------CCCChHHHHHHHHHHhhccchhhhc
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPS----------VSFTDEEVGDLTVRIQNAGTEVVEA  309 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~----------~~~~~~~~~~l~~~v~~~g~eii~~  309 (412)
                      .||++|++++||+++|++|++|+++|||+|| ++++|+||++...          ....+++++++.++++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHG-NKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSS-TTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-CCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            5899999999999999999999999999996 6999999997521          2256677889999999999999998


Q ss_pred             ccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          310 KAGAGSATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       310 K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                      |   |++.|++|.++++++++++.+.   +.+++++ +++++| ..+.|||+||+||++|++++++   ++||++|+++|
T Consensus        81 ~---~~~~~a~a~a~~~~~~~i~~~~---~~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~---l~L~~~E~~~L  151 (165)
T d1t2da2          81 H---ASPYVAPAAAIIEMAESYLKDL---KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE---LQLNSEEKAKF  151 (165)
T ss_dssp             T---SSCCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECC---CCCCHHHHHHH
T ss_pred             c---cceeechhHHHHHHHHHHhhcc---ccceeeeeccccccccCCeeEeeeEEEcCCceEEEeC---CCCCHHHHHHH
Confidence            8   7899999999999999999984   5678776 555554 3456999999999999999999   68999999999


Q ss_pred             HHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEK  400 (412)
Q Consensus       388 ~~sa~~L~~~i~~  400 (412)
                      ++|+++|++..+.
T Consensus       152 ~~s~~~lk~~~~~  164 (165)
T d1t2da2         152 DEAIAETKRMKAL  164 (165)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987654

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=213.73  Aligned_cols=151  Identities=18%  Similarity=0.196  Sum_probs=131.3

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC--------CCChHHHHHHHHHHhhccchh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV--------SFTDEEVGDLTVRIQNAGTEV  306 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~--------~~~~~~~~~l~~~v~~~g~ei  306 (412)
                      |.||++||+++||+++|+++++|+++|||+|| ++++|+||+++.    ..        ....++++++.+++++.+.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg-~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHG-DSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSS-TTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCC-CcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            68999999999999999999999999999997 699999999852    11        123345788999999999999


Q ss_pred             hhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC---CCCCCceeeeEEEcCCceEEeecCCCCCCCHHH
Q 015172          307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN---LTELPFFASRVKLGRNGVESLISSDLQGLTEYE  383 (412)
Q Consensus       307 i~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~---i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E  383 (412)
                      +..|   +++.+++|.++++++++++.+   ++.++|++++..+   ++++.|||+||++|++|++++++   ++|+++|
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~~~~~~---~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~---l~L~~~E  152 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIESMLKN---LSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVIN---QKLKDDE  152 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC---CCCCHHH
T ss_pred             eecc---cccchHHHHHHHHHHHHHhcC---CCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeC---CCCCHHH
Confidence            9988   789999999999999999998   4678998866543   35677999999999999999998   6899999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          384 QKALEALKPELKASIE  399 (412)
Q Consensus       384 ~~~L~~sa~~L~~~i~  399 (412)
                      +++|++|+++|++.++
T Consensus       153 ~~~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         153 VAQLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987654

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.5e-27  Score=212.25  Aligned_cols=153  Identities=19%  Similarity=0.331  Sum_probs=130.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC-------ChHHHHHHHHHHhhccchhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF-------TDEEVGDLTVRIQNAGTEVV  307 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~-------~~~~~~~l~~~v~~~g~eii  307 (412)
                      |.||++||+++||++||+++++|+++|||+|| ++++|+||+++    |..++       ....++++.++++..+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHG-DTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSS-TTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            67999999999999999999999999999996 69999999886    22221       22335788888888899999


Q ss_pred             hcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          308 EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       308 ~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                      ..|   |++.|+++.++.+++++++.+   ...++++++. .+.| .++.|||+||+||++||+++++   ++||++|++
T Consensus        80 ~~~---~~s~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~---l~Ls~~E~~  150 (168)
T d1ldna2          80 EKK---GATYYGIAMGLARVTRAILHN---ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIE---IELNDDEKN  150 (168)
T ss_dssp             HHH---SCCCHHHHHHHHHHHHHHHTT---CCEEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECC---CCCCHHHHH
T ss_pred             Hhh---ccccchHHHHHhhHHHhhhcc---cceeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeC---CCCCHHHHH
Confidence            887   789999999999999999988   4568887654 3334 3457999999999999999988   689999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015172          386 ALEALKPELKASIEKG  401 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~  401 (412)
                      +|++|++.|++.|++|
T Consensus       151 ~L~~s~~~lk~~i~~a  166 (168)
T d1ldna2         151 RFHHSAATLKSVLARA  166 (168)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999885

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.2e-27  Score=208.35  Aligned_cols=141  Identities=28%  Similarity=0.491  Sum_probs=116.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCe-----EEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-----v~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +++||+||||+|.||+++++.|++++++++     +.|+|.+.    ..+.++|+.|+..+. ...+..+++..++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccc-ccccccCCchhhhcccc
Confidence            468999999889999999999999988764     55666654    466778888876554 33333333334589999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHH-hCCCCCCCeEe
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQ-KGVYDPKKLFG  237 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~-~sg~~~~kviG  237 (412)
                      |+||+++|.||+||++|+|++.+|+++++++++.+.+++ |+++++++|||+|+    +++++++ ++|+||+|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv----~t~~a~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT----NALIAYKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH----HHHHHHHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH----HHHHHHHHcCCCcHHhccC
Confidence            999999999999999999999999999999999999999 58999999999994    4555555 68999999984

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.94  E-value=1.6e-27  Score=212.46  Aligned_cols=154  Identities=16%  Similarity=0.204  Sum_probs=128.2

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-----CChHHHHHHHHHHhhccchhhhc
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-----FTDEEVGDLTVRIQNAGTEVVEA  309 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-----~~~~~~~~l~~~v~~~g~eii~~  309 (412)
                      |.||++||+++||++||+++++|+++|||+|| ++++|+||++..    ..+     ...+++.++.++.++++.+++.+
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHG-DSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSS-TTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCC-ccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            68999999999999999999999999999997 699999999862    211     22233456777788888888887


Q ss_pred             ccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172          310 KAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA  386 (412)
Q Consensus       310 K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~  386 (412)
                      |   +++.+++|.++++++++++.+   ++.+++++.+.. .|  ++++|||+||+||++||+++++   ++|+++|+++
T Consensus        82 ~---~s~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~---l~L~~~E~~~  152 (169)
T d1ldma2          82 K---GYTSWAIGLSVADLAETIMKN---LCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVK---MKLKPNEEQQ  152 (169)
T ss_dssp             H---SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECC---CCCCHHHHHH
T ss_pred             c---cchhhHHHHHHhhhhheecCC---CCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEec---CCCCHHHHHH
Confidence            7   789999999999999999998   467888875543 33  5677999999999999999999   6899999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015172          387 LEALKPELKASIEKGVA  403 (412)
Q Consensus       387 L~~sa~~L~~~i~~~~~  403 (412)
                      |++|+++|++ +.+.++
T Consensus       153 l~~s~~~l~~-~~k~lk  168 (169)
T d1ldma2         153 LQKSATTLWD-IQKDLK  168 (169)
T ss_dssp             HHHHHHHHHH-HHHTCC
T ss_pred             HHHHHHHHHH-HHHhcC
Confidence            9999999975 444443

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.94  E-value=1.2e-28  Score=220.70  Aligned_cols=155  Identities=20%  Similarity=0.350  Sum_probs=132.2

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-------CChHHHHHHHHHHhhccchhh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-------FTDEEVGDLTVRIQNAGTEVV  307 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-------~~~~~~~~l~~~v~~~g~eii  307 (412)
                      |.||++||+++||+++|+++++|+++|||+|| ++++|+||++.    |..+       +..+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg-~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHG-DTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSS-SSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCC-CcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            67999999999999999999999999999996 69999999975    3322       223345778888999999999


Q ss_pred             hcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172          308 EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK  385 (412)
Q Consensus       308 ~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~  385 (412)
                      ++|   |++.|++|.++++++++++.+   +..+++++ ++.+.| ...+|||+||++|++|++++++   ++||++|++
T Consensus        80 ~~k---g~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~---l~L~~~E~~  150 (172)
T d1llca2          80 KLK---GATFYGIATALARISKAILND---ENAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILE---IPLTDHEEE  150 (172)
T ss_dssp             SSS---SCTTHHHHHHHHHHHHHHHHT---CCCCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECC---CCCTTHHHH
T ss_pred             Hhh---hhhhhhhHHHHHHHHHHHhcC---CCCccceeeeecCccCcccceEEEEEEEcCCceEEEec---CCCCHHHHH
Confidence            987   899999999999999999998   35678776 455544 2357999999999999999999   689999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015172          386 ALEALKPELKASIEKGVA  403 (412)
Q Consensus       386 ~L~~sa~~L~~~i~~~~~  403 (412)
                      +|++|+++||+.++++++
T Consensus       151 ~l~~s~~~lk~~i~~~~~  168 (172)
T d1llca2         151 SMQKSASQLKKVLTDAFA  168 (172)
T ss_dssp             HHHTTTTTTTTTTTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999988876543

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=3.6e-26  Score=204.71  Aligned_cols=158  Identities=20%  Similarity=0.239  Sum_probs=124.5

Q ss_pred             ccccchHHHHHHHHHHcCCCCCCeeeeEE-cccCCcccccccccCCC----CCCCChHH--HHHHHHHHhhccchhhhcc
Q 015172          238 VTTLDVVRANTFVAQKKNLKLIDVDVPVV-GGHAGITILPLLSKTMP----SVSFTDEE--VGDLTVRIQNAGTEVVEAK  310 (412)
Q Consensus       238 lt~Lds~R~~~~la~~l~v~~~~V~~~Vi-G~hgg~~~vp~~S~~~p----~~~~~~~~--~~~l~~~v~~~g~eii~~K  310 (412)
                      ||.||++|||++||+++|++|++|++++| |+|| ++++|+||++++    ..++..++  ..+..++..+.+.+++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG-~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS-STMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS-TTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecC-ccEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            57899999999999999999999999765 7775 799999999873    33443222  2444555555555655544


Q ss_pred             cCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC---CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172          311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN---LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL  387 (412)
Q Consensus       311 ~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~---i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L  387 (412)
                        +++++|++|.++++++++++.+.+ +..++||+++..+   ++++.|||+||+++++|++.+.+   ++||++|+++|
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~~~-~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~---l~L~~~E~~~l  153 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG---LEINEFARKRM  153 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCC---CCCCHHHHHHH
T ss_pred             --ccCchhhHHHHHHHHHHHHhcccC-CCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecC---CCCCHHHHHHH
Confidence              278999999999999999999865 3578898866443   46788999999987766666666   68999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015172          388 EALKPELKASIEKGV  402 (412)
Q Consensus       388 ~~sa~~L~~~i~~~~  402 (412)
                      ++|+++|+++++...
T Consensus       154 ~~s~~~L~~~~e~vk  168 (173)
T d1y7ta2         154 EITAQELLDEMEQVK  168 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998643

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.9e-26  Score=202.95  Aligned_cols=150  Identities=18%  Similarity=0.229  Sum_probs=127.0

Q ss_pred             cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC--------CChHHHHHHHHHHhhccchh
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS--------FTDEEVGDLTVRIQNAGTEV  306 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~--------~~~~~~~~l~~~v~~~g~ei  306 (412)
                      |.||++|++++||+++|++|++|+++|||+|+ ++++|+||++.    |..+        ...++++++.+..+..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs-~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHG-DSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSS-SCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCC-CccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            67999999999999999999999999999997 68999999986    3222        12223467888888888899


Q ss_pred             hhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec-CC--CCCCCceeeeEEEcCCceEEeecCCCCCCCHHH
Q 015172          307 VEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE-SN--LTELPFFASRVKLGRNGVESLISSDLQGLTEYE  383 (412)
Q Consensus       307 i~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~--i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E  383 (412)
                      +..|   +++.+++|.++.+++.+++.+   +..+++++... ++  ++++.|||+||+||++|++++++   ++|+++|
T Consensus        82 ~~~k---~~s~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~---l~L~~~E  152 (172)
T d2ldxa2          82 LDMK---GYTSWAIGLSVTDLARSILKN---LKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVK---VNMTAEE  152 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTT---CCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEEC---CCCCHHH
T ss_pred             hhcc---cchhHHHHHHHhHHHHhhcCC---CccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEec---CCCCHHH
Confidence            8887   789999999999999999987   45678876543 33  35677999999999999999999   6899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015172          384 QKALEALKPELKASI  398 (412)
Q Consensus       384 ~~~L~~sa~~L~~~i  398 (412)
                      +++|++|++.|++.+
T Consensus       153 ~~~l~~s~~~lk~~~  167 (172)
T d2ldxa2         153 EGLLKKSADTLWNMQ  167 (172)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999997643

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.91  E-value=1.3e-24  Score=193.99  Aligned_cols=156  Identities=16%  Similarity=0.159  Sum_probs=116.1

Q ss_pred             ccchHHHHHHHHHHcCCCCCCeeeeEE-cccCCcccccccccCCCCCC----C-ChHH--HHHHHHHHhhccchhhhccc
Q 015172          240 TLDVVRANTFVAQKKNLKLIDVDVPVV-GGHAGITILPLLSKTMPSVS----F-TDEE--VGDLTVRIQNAGTEVVEAKA  311 (412)
Q Consensus       240 ~Lds~R~~~~la~~l~v~~~~V~~~Vi-G~hgg~~~vp~~S~~~p~~~----~-~~~~--~~~l~~~v~~~g~eii~~K~  311 (412)
                      .||++|||++||+++|++|++|+++|| |+| |++++|+||++++...    + .++.  .+++.+.+++.+.++...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~Geh-G~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcC-CCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            389999999999999999999998666 655 5899999999875432    1 2222  2456666677777777766 


Q ss_pred             CCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHH
Q 015172          312 GAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALE  388 (412)
Q Consensus       312 g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~  388 (412)
                      +.+++.++.+.++..+.+++..+   ...+++++++..+ |  +++.|||+||++|++||+.+.+   ++|+++|+++|+
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~---~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~---l~L~~~e~~~l~  153 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGT---AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQG---LSIDAFSQERIN  153 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCC---TTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCC---CCCCHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCC---CccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHH
Confidence            32444444545555455555443   3468888766443 4  6778999999999999999988   689999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 015172          389 ALKPELKASIEKGVA  403 (412)
Q Consensus       389 ~sa~~L~~~i~~~~~  403 (412)
                      +|+++|+++++....
T Consensus       154 ~s~~~L~~e~~~v~~  168 (171)
T d1b8pa2         154 VTLNELLEEQNGVQH  168 (171)
T ss_dssp             HHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998866543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=2.3e-25  Score=199.35  Aligned_cols=139  Identities=20%  Similarity=0.274  Sum_probs=112.8

Q ss_pred             CceEEEEcCCCCcHHHH--HHHHHhCCC--CCeEEEEecCc--hhhhhhhhcccC----CCCceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPL--ALLIKMSPL--VSALHLYDVMN--VKGVAADLSHCN----TPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~i--A~~l~~~gl--~~ev~L~Di~~--~~g~~~dL~~~~----~~~~v~~i~~t~d~~~al~~a  162 (412)
                      .+||+|||| |++|.+.  +..++....  .+||+|+|+++  .++.+.|+.|..    ..... .+..++|+.++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~-~~~~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPI-EIHLTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCC-EEEEESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCc-eeeecCCchhhcCCC
Confidence            379999998 9887654  344444432  36999999988  567788887642    22223 234567777899999


Q ss_pred             cEEEEcCCCCCCCCCchhhHH--------------------HhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHH
Q 015172          163 NVVVIPAGVPRKPGMTRDDLF--------------------NINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAE  222 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~--------------------~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~  222 (412)
                      |+||+++|.+++++++|+|++                    .+|++++++++++|+++|||||++++|||+|    ++++
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvd----v~t~  154 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MVTE  154 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHH
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHH----HHHH
Confidence            999999999999998888774                    5899999999999999999999999999999    7788


Q ss_pred             HHHHhCCCCCCCeEecc
Q 015172          223 VLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       223 i~~~~sg~~~~kviGlt  239 (412)
                      ++++.  +|++||||+|
T Consensus       155 ~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         155 AVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHH--CCCCCEEECC
T ss_pred             HHHHH--CCCCCEEeeC
Confidence            88998  6889999997

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.1e-25  Score=197.15  Aligned_cols=137  Identities=15%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC----CCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS----PLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~----gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      |||+|||| |++|.+.++.....    ...+||+|+|+++ ..+.+.|+.|........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999998 99999998765432    2247999999998 333456666653322233333 34555689999999999


Q ss_pred             CCCCCCCCCchhhHHHhhH--------------------HHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhC
Q 015172          169 AGVPRKPGMTRDDLFNINA--------------------NIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKG  228 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~--------------------~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~s  228 (412)
                      +|.+++++++|++++.+|.                    +++.++ .++.++||+||++++|||+|    ++|+++++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i-~~~~~~~p~a~~i~vtNPvd----iit~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEY-VDTVRKTSNATIVNFTNPSG----HITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHH-HHHHHHTTCCEEEECSSSHH----HHHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHH-hhhhccCCCeEEEEeCCHHH----HHHHHHHHh-
Confidence            9999999999988876654                    455555 45778999999999999999    789999998 


Q ss_pred             CCCCCCeEecc
Q 015172          229 VYDPKKLFGVT  239 (412)
Q Consensus       229 g~~~~kviGlt  239 (412)
                       +|++||||+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=2.7e-24  Score=192.04  Aligned_cols=138  Identities=20%  Similarity=0.289  Sum_probs=109.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHh--C-CC-CCeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKM--S-PL-VSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~--~-gl-~~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +..||+|||| |++|...++....  . .+ .+||+|+|+++  +++.+.++.+..  ...... +..++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIE-FAATTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSE-EEEESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcc-eEecCChhhccCCCC
Confidence            4579999999 9999876543332  2 22 36999999998  455555555532  222222 234568888999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHH--------------------hhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172          164 VVVIPAGVPRKPGMTRDDLFN--------------------INANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV  223 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~--------------------~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i  223 (412)
                      +||+++|.++++|++|+|++.                    +|+++++++++.|+++|||||++++|||+|    +++++
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvd----v~t~~  155 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEA  155 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHHH
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHH----HHHHH
Confidence            999999999999999999865                    568999999999999999999999999999    77888


Q ss_pred             HHHhCCCCCCCeEe
Q 015172          224 LKQKGVYDPKKLFG  237 (412)
Q Consensus       224 ~~~~sg~~~~kviG  237 (412)
                      +++.  +|++|||.
T Consensus       156 ~~k~--~P~~rVI~  167 (167)
T d1u8xx1         156 TRRL--RPNSKILN  167 (167)
T ss_dssp             HHHH--STTCCEEE
T ss_pred             HHHH--CCcccccC
Confidence            9998  79999983

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.2e-22  Score=181.92  Aligned_cols=137  Identities=17%  Similarity=0.196  Sum_probs=107.6

Q ss_pred             CCceEEEEcCCCCcHHHHHH--HHHhC-CC-CCeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCc
Q 015172           92 ASFKVAVLGAAGGIGQPLAL--LIKMS-PL-VSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVN  163 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~--~l~~~-gl-~~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aD  163 (412)
                      +.|||+|||| |++|.+.+.  .++.. .+ .+||+|+|+++  +++.+.|+.|..  ..... .+.+++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~-~i~~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL-KFEKTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCC-EEEEESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCe-EEEEeCChhhcccCCC
Confidence            3689999998 999988654  23333 33 35999999997  566777777743  22222 3456788999999999


Q ss_pred             EEEEcCCC------------------CCCCCCchhhH--------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcH
Q 015172          164 VVVIPAGV------------------PRKPGMTRDDL--------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTV  217 (412)
Q Consensus       164 iVIiaag~------------------p~k~g~~r~dl--------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~  217 (412)
                      +||+++++                  +++++++|.|+        ..+|+++++++++.|+++||++|++++|||+|   
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvd---  155 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF---  155 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH---
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHH---
Confidence            99988654                  55677887775        45899999999999999999999999999999   


Q ss_pred             HHHHHHHHHhCCCCCCCeEe
Q 015172          218 PIAAEVLKQKGVYDPKKLFG  237 (412)
Q Consensus       218 pI~t~i~~~~sg~~~~kviG  237 (412)
                       ++++++++.++   -|+||
T Consensus       156 -v~t~~~~k~~~---~k~iG  171 (171)
T d1obba1         156 -EGTTLVTRTVP---IKAVG  171 (171)
T ss_dssp             -HHHHHHHHHSC---SEEEE
T ss_pred             -HHHHHHHHhcC---CCccC
Confidence             67888899864   48887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=141.44  Aligned_cols=124  Identities=15%  Similarity=0.221  Sum_probs=96.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhh----hcccCCC-----------CceeeecCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAAD----LSHCNTP-----------SQVLDFTGP  152 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~d----L~~~~~~-----------~~v~~i~~t  152 (412)
                      .+||+|||| |.||.++|+.++..|+  +|+|+|+++ .    .....+    +......           ..+..+..+
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~   80 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   80 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc
Confidence            469999998 9999999999999999  999999987 1    111111    1111100           112345556


Q ss_pred             CcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCC
Q 015172          153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYD  231 (412)
Q Consensus       153 ~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~  231 (412)
                      +|+.+++++||+||++              +.||+++++++..++++++ |++++  +||++.  +++ ++++...  .+
T Consensus        81 ~d~~~a~~~ad~ViEa--------------v~E~l~~K~~v~~~l~~~~~~~~il--asnTS~--l~i-~~la~~~--~~  139 (192)
T d1f0ya2          81 TDAASVVHSTDLVVEA--------------IVENLKVKNELFKRLDKFAAEHTIF--ASNTSS--LQI-TSIANAT--TR  139 (192)
T ss_dssp             SCHHHHTTSCSEEEEC--------------CCSCHHHHHHHHHHHTTTSCTTCEE--EECCSS--SCH-HHHHTTS--SC
T ss_pred             chhHhhhcccceehhh--------------cccchhHHHHHHHHHhhhcccCcee--eccCcc--ccc-chhhhhc--cC
Confidence            7888899999999999              6899999999999999999 78988  999998  455 7777765  67


Q ss_pred             CCCeEeccc
Q 015172          232 PKKLFGVTT  240 (412)
Q Consensus       232 ~~kviGlt~  240 (412)
                      |+|++|++.
T Consensus       140 p~r~ig~Hf  148 (192)
T d1f0ya2         140 QDRFAGLHF  148 (192)
T ss_dssp             GGGEEEEEE
T ss_pred             HhHEEeecc
Confidence            999999975

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.57  E-value=4.4e-16  Score=140.27  Aligned_cols=126  Identities=20%  Similarity=0.241  Sum_probs=97.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhhhc----cc-CCC-----CceeeecCCCcH
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAADLS----HC-NTP-----SQVLDFTGPEEL  155 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~dL~----~~-~~~-----~~v~~i~~t~d~  155 (412)
                      +..+||+|||| |.||.++|..++..|+  +|+|+|+++ .    .....+..    .. ...     ..+..+..++++
T Consensus         2 ~~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (186)
T d1wdka3           2 KDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY   78 (186)
T ss_dssp             CCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc
Confidence            35679999998 9999999999999999  999999986 1    11111111    11 111     123345556677


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCC
Q 015172          156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKK  234 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~k  234 (412)
                      + ++.+||+||++              +.||+++++++.++|++++ |++|+  +||++.  +++ ++++...  -+|+|
T Consensus        79 ~-~~~~adlViEa--------------v~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~--l~i-~~la~~~--~~p~r  136 (186)
T d1wdka3          79 G-DFGNVDLVVEA--------------VVENPKVKQAVLAEVENHVREDAIL--ASNTST--ISI-SLLAKAL--KRPEN  136 (186)
T ss_dssp             T-TGGGCSEEEEC--------------CCSCHHHHHHHHHHHHTTSCTTCEE--EECCSS--SCH-HHHGGGC--SCGGG
T ss_pred             c-cccccceeeee--------------ecchHHHHHHHHHHHHhhcCCCeeE--Eecccc--ccH-HHHHHhc--cCchh
Confidence            5 79999999999              5899999999999999999 79998  999998  445 7777776  57899


Q ss_pred             eEecccc
Q 015172          235 LFGVTTL  241 (412)
Q Consensus       235 viGlt~L  241 (412)
                      ++|++..
T Consensus       137 ~~g~Hf~  143 (186)
T d1wdka3         137 FVGMHFF  143 (186)
T ss_dssp             EEEEECC
T ss_pred             eEeeccc
Confidence            9999753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.72  E-value=3.2e-08  Score=85.96  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhh--ccc---CCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADL--SHC---NTPSQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL--~~~---~~~~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      +||+|||| |.||..+|..|+.+|+  +|.+||+++.+ ....+.  ...   ...........++|.+++++++|+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            69999998 9999999999999999  99999998621 111111  101   011111111124678889999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      +..                .....+++++++++. ++.+|+...|..
T Consensus        79 ~v~----------------~~~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVP----------------AIHHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSC----------------GGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEc----------------hhHHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            842                123466888888887 778775554443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.72  E-value=2.4e-08  Score=89.56  Aligned_cols=130  Identities=13%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------------CceeeecCCCcHHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------------SQVLDFTGPEELASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------------~~v~~i~~t~d~~~al~  160 (412)
                      |||+|||+ |+||..+|..++..|.  +|+.||+|+.+  ...|.....+             ..-..+..++|++++++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~--i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHH--HHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh
Confidence            89999998 9999999999999999  99999998621  1111111100             00112334678888999


Q ss_pred             CCcEEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCCCcHHHHHHHHHHhCCCC
Q 015172          161 GVNVVVIPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVNSTVPIAAEVLKQKGVYD  231 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~~~~pI~t~i~~~~sg~~  231 (412)
                      +||+|+++.+.|.....+ ....+   ..+.+++...++...++.++++- |-|...+-.++..++.+..+..
T Consensus        76 ~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~  145 (202)
T d1mv8a2          76 DSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKK  145 (202)
T ss_dssp             TCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCC
T ss_pred             hCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccc
Confidence            999999999998644332 11111   23444444545444467666554 4555532233333344433333

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.59  E-value=1.1e-07  Score=81.81  Aligned_cols=90  Identities=20%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||+|||+ |.||+.+|..|...|+  +|+.||+++. ...+.++.-      ....  .++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~------~~~~--~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQL------VDEA--GQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTS------CSEE--ESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhc------ccee--eeec-ccccccccccccC--c
Confidence            79999998 9999999999999999  9999999862 111211110      1111  2344 4799999999984  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                                    ...+.++.+++.++. ++.+|+..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          345667777787776 6777755543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.58  E-value=7.2e-08  Score=84.92  Aligned_cols=97  Identities=19%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc----CCC--CceeeecCCCcHHhhcCCCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC----NTP--SQVLDFTGPEELASALKGVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~----~~~--~~v~~i~~t~d~~~al~~aDiVIi  167 (412)
                      |||+|||+ |.+|..+|..|+.+|.  +|.||.++........+...    ...  .....+..++|.+++++++|+||+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhc
Confidence            89999998 9999999999999998  99999764322222223211    111  112234567889889999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      +.  |              ...++++++++..+.++..+++.
T Consensus        78 av--p--------------s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          78 GV--S--------------TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             CS--C--------------GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             cc--c--------------hhhhHHHHHhhccccccceeccc
Confidence            84  2              34556778888888755555443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.42  E-value=1.1e-07  Score=84.75  Aligned_cols=75  Identities=15%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc--C-CC-Cce-eeecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC--N-TP-SQV-LDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~--~-~~-~~v-~~i~~t~d~~~al~~aDiVI  166 (412)
                      .|+||+|||| |.+|..+|..|+..|.  +|.||++++.......-.+.  . .+ ..+ ..+..++|+++++++||+||
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ii   82 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL   82 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEE
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEE
Confidence            3668999998 9999999999999998  99999998621111111111  1 11 111 12345689999999999999


Q ss_pred             EcC
Q 015172          167 IPA  169 (412)
Q Consensus       167 iaa  169 (412)
                      ++.
T Consensus        83 iav   85 (189)
T d1n1ea2          83 FVI   85 (189)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            984

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2.1e-07  Score=79.27  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||+ |.||..+|..|+..|+  +|.++|+++...................+ .+.+. +.+.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL-TANDP-DFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE-EESCH-HHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc-ccchh-hhhcccceEEEeeccc-
Confidence            89999998 9999999999999999  99999998632221111111111111122 22344 4789999999995322 


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                     -..+..+.+..+. ++.+|+...|-.+
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCccc
Confidence                           1345667777665 7888888889876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.26  E-value=6.4e-06  Score=70.62  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |+||+|||+ |.||+++|..|...|+..+|+.||.++ ....+.++..      ........+ .....++|+||++.  
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~------~~~~~~~~~-~~~~~~~dlIila~--   70 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------IDEGTTSIA-KVEDFSPDFVMLSS--   70 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------CSEEESCGG-GGGGTCCSEEEECS--
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc------chhhhhhhh-hhhccccccccccC--
Confidence            467999998 999999999999998766899999986 2223322211      111111112 22457999999994  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNP  212 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNP  212 (412)
                      |              ...+.++.+++..+. ++.+++-++..
T Consensus        71 p--------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          71 P--------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             C--------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             C--------------chhhhhhhhhhhccccccccccccccc
Confidence            2              234555666777666 78887555543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.24  E-value=9e-07  Score=76.05  Aligned_cols=91  Identities=18%  Similarity=0.259  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      |||+|||. |.||.++|..|+..|+  +|+.||+++.+  ..++....    ..   ...+.++.+++||+||++..   
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~~--~~~~~~~~----~~---~~~~~~e~~~~~d~ii~~v~---   65 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AE---TASTAKAIAEQCDVIITMLP---   65 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CE---ECSSHHHHHHHCSEEEECCS---
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcch--hHHHHHhh----hh---hcccHHHHHhCCCeEEEEcC---
Confidence            79999998 9999999999999999  99999998622  12222221    11   12456778999999999942   


Q ss_pred             CCCCchhhHHHhhHHHHHHHH---HHHHhhC-CCeEEEEEcC
Q 015172          174 KPGMTRDDLFNINANIVKTLV---EAVADNC-PDAFIHIISN  211 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~---~~i~~~~-p~aiviv~TN  211 (412)
                                  |-+.++++.   ..+.... |+.+++..|+
T Consensus        66 ------------~~~~v~~v~~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          66 ------------NSPHVKEVALGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             ------------SHHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             ------------CHHHHHHHHhCCcchhhccCCCCEEEECCC
Confidence                        234455554   3344444 6777755543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.9e-06  Score=73.49  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ++||.|+||+|++|..++..|+.+|.  +|++++++..+..  +...........++.-..++.++++++|+||.++|..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~--~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhcc--cccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            67999999999999999999999998  9999998753211  1111111111112222346677899999999998864


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PD  203 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~  203 (412)
                      ......     ..+....+.+++.+++.. +.
T Consensus        79 ~~~~~~-----~~~~~~~~~l~~aa~~~~v~r  105 (205)
T d1hdoa_          79 NDLSPT-----TVMSEGARNIVAAMKAHGVDK  105 (205)
T ss_dssp             TCCSCC-----CHHHHHHHHHHHHHHHHTCCE
T ss_pred             Cchhhh-----hhhHHHHHHHHHHHHhcCCCe
Confidence            222111     123455666777777766 44

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.04  E-value=2.5e-06  Score=75.25  Aligned_cols=104  Identities=20%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC------------CCceeeecCCCcHHhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT------------PSQVLDFTGPEELASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~------------~~~v~~i~~t~d~~~al~~  161 (412)
                      |||+|||. |+||..+|..++ +|.  +|+.||+++.+  ...|.....            .... .++.+++...+..+
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~--v~~l~~g~~p~~e~~l~~~~~~~~~-~~~~~~~~~~~~~~   73 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQL-SIKATLDSKAAYKE   73 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCC-CEEEESCHHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHH--HHHHhhcccccchhhHHHHhhhhhh-hhhccchhhhhhhc
Confidence            89999998 999999997664 688  99999999721  111111110            0111 12223455567899


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      +|+|+++.+.|.....+..+     ...+....+.+....++.++++-
T Consensus        74 ~~ii~v~vpt~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~iii~  116 (196)
T d1dlja2          74 AELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIK  116 (196)
T ss_dssp             CSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             cccccccCCccccccCCCcc-----eeEEeehhhhhhhcccceeEEee
Confidence            99999998777543322222     34555566666666676666544

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=9.5e-06  Score=76.78  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=73.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h-hhh---hhhhcccCCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V-KGV---AADLSHCNTPSQVLDFTGPEELASALK--GVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~-~g~---~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVI  166 (412)
                      |||.|+||+|++|+.++..|+..|.  +|+++|... . ...   ...+..........+++-...+.+.++  ++|+||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi   78 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence            7999999999999999999999998  999999743 1 111   111111111110112221223444555  789999


Q ss_pred             EcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          167 IPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       167 iaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      .+|+.+..+-  ++..+.+..|+...+.+.+.+.++...-+|...
T Consensus        79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~S  123 (338)
T d1udca_          79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSS  123 (338)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecC
Confidence            9987542111  134567888999999999999988755555433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.92  E-value=2e-05  Score=67.36  Aligned_cols=65  Identities=20%  Similarity=0.374  Sum_probs=49.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |+||+|||. |.||.++|..|...|+  +|..||++..+  ..++....  . .    ...+..+.++++|+|+.+.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~--~~~~~~~~--~-~----~~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSA--VDGLVAAG--A-S----AARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHTT--C-E----ECSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhh--hhhhhhhh--c-c----ccchhhhhccccCeeeecc
Confidence            579999998 9999999999999999  99999998632  12233221  1 1    1235667899999999984

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=5.2e-05  Score=64.26  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCC--CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSP--LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~g--l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |+||+||||+|+||+-+...|..++  ...+++++..+...+........  .....  . ..+.. +++++|+||.+++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~--~~~~~--~-~~~~~-~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQ--D-AFDLE-ALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC--CCBCE--E-TTCHH-HHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC--ceeee--c-ccchh-hhhcCcEEEEecC
Confidence            5799999999999999987666553  23588888765422221111111  11111  1 13443 6899999999953


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                      .++-+++.+.+.+...+++|  +.|-++
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                            46667788888776666666  788776

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.88  E-value=1.7e-05  Score=67.37  Aligned_cols=65  Identities=12%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||+ |.||++++..+...+.  ++.++|.+..+.  .++.... .  .   ..+.+.++.+++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~~--~~l~~~~-g--~---~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL-A--L---PYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH-T--C---CBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHhH--Hhhcccc-c--e---eeechhhhhhhccceeeeec
Confidence            79999998 9999999999988887  999999875221  1221110 1  1   12356777899999999995

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.88  E-value=1.6e-05  Score=68.71  Aligned_cols=103  Identities=17%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .|||+|||. |.||.++|..|+..|+  +|..||+++.+.  ......+..............++-..+..++.+++...
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQ   77 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeec
Confidence            389999998 9999999999999999  999999986321  22211111111111111111233346678888877732


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                     +-.....+...+.... ++.+++..| +.+
T Consensus        78 ---------------~~~~~~~~~~~~~~~~~~~~iii~~s-t~~  106 (178)
T d1pgja2          78 ---------------AGAATDSTIEQLKKVFEKGDILVDTG-NAH  106 (178)
T ss_dssp             ---------------CSHHHHHHHHHHHHHCCTTCEEEECC-CCC
T ss_pred             ---------------CcchhhhhhhhhhhhccccceecccC-ccc
Confidence                           1123333445555555 666665543 443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.82  E-value=3.2e-05  Score=65.30  Aligned_cols=64  Identities=17%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||++||+ |.||.+++..|...+ .  +|.++|.++.+.  .++... ..  +..   .++.+ +++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~--~i~v~~r~~~~~--~~l~~~-~~--~~~---~~~~~-~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEKR--ERLEKE-LG--VET---SATLP-ELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHHH--HHHHHH-TC--CEE---ESSCC-CCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCC--cEEEEeCChhHH--HHhhhh-cc--ccc---ccccc-cccccceEEEec
Confidence            79999998 999999999777665 5  999999986221  122221 11  221   23444 589999999994

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.79  E-value=4.2e-05  Score=66.18  Aligned_cols=97  Identities=19%  Similarity=0.200  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+|+|||. |.||.++|..|+..|+  +|+.||+++.+.  .++...... ..........+..+.+.++|++|+...  
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHhccccccccchhhhhhhhhhhcccceEEEecC--
Confidence            47999998 9999999999999999  999999987322  222222111 111111112355568899999999832  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                                   +.+.+.++...+.... |+.++|..|
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         1244555566666666 677776655

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.4e-05  Score=69.25  Aligned_cols=110  Identities=22%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +||.|+||+|++|..++..|+.+|.+.+|.++++++..........  ......++....++.++++++|+||.++|...
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~--i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~   92 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN--VNQEVVDFEKLDDYASAFQGHDVGFCCLGTTR   92 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG--CEEEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce--eeeeeecccccccccccccccccccccccccc
Confidence            5899999999999999999999887779999998752100000000  01111122223467778999999999987542


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                       ......++...|......+++...+....-++
T Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi  124 (232)
T d2bkaa1          93 -GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  124 (232)
T ss_dssp             -HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             -cccchhhhhhhcccccceeeecccccCccccc
Confidence             12234455667788888888887776555444

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=7.2e-05  Score=70.90  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=71.1

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +.+.|||.|+||+|++|+.++..|..+|.  +|+.+|.........++....  ....++.-..+..+.++++|.||.++
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCDE--FHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCSE--EEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccCc--EEEeechhHHHHHHHhhcCCeEeecc
Confidence            45679999999999999999999999998  999999864211111111111  11112211223445678999999988


Q ss_pred             CCCCCC---CCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          170 GVPRKP---GMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       170 g~p~k~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                      +.....   ..........|......+.....+..-.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk  124 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK  124 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCcc
Confidence            654321   1223344567888888888888776633

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=0.00019  Score=60.10  Aligned_cols=102  Identities=15%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      .++||+|||+.|.||..+|..|...|+  +|.++|++...                      +.++.++++|+++.+.. 
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~~-   62 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVP-   62 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSC-
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccccc-
Confidence            467999999339999999999999999  99999986421                      11235789999999842 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                                     .....++..++..+. ++++++-.+ .+.  .+++ +.+.+.   .+.+++|.+-
T Consensus        63 ---------------~~~~~~v~~~~~~~~~~~~iiiD~~-Svk--~~~~-~~~~~~---~~~~~v~~hP  110 (152)
T d2pv7a2          63 ---------------INLTLETIERLKPYLTENMLLADLT-SVK--REPL-AKMLEV---HTGAVLGLHP  110 (152)
T ss_dssp             ---------------GGGHHHHHHHHGGGCCTTSEEEECC-SCC--HHHH-HHHHHH---CSSEEEEEEE
T ss_pred             ---------------hhhheeeeecccccccCCceEEEec-ccC--HHHH-HHHHHH---ccCCEEEecc
Confidence                           122344555666666 677776554 333  3343 333333   2346776643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=97.59  E-value=4.9e-05  Score=70.52  Aligned_cols=114  Identities=20%  Similarity=0.131  Sum_probs=72.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--h-hhhhhhhccc-CCCCceeeecCCCcHHhhcCCC--cEEEEc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--V-KGVAADLSHC-NTPSQVLDFTGPEELASALKGV--NVVVIP  168 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~-~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~a--DiVIia  168 (412)
                      ||.|+||+|++|++++..|+.+|.  +|+.+|.-.  . ......+... .......++.-..++.++++++  |+||.+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999998  999998532  1 1111111111 1111111222223455566655  999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |+....+.  .+..+....|+.....+.+.+.+....-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87543221  2335567789999999999998887554444444

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00026  Score=65.92  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR  173 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~  173 (412)
                      +||.|+||+|++|+.++..|+.+|.  +|+.+|.... +....+.+......+.... ....+..+.++|+||.+|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            6899999999999999999999998  9999996431 0011111111111122111 1223346789999999987543


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172          174 KP--GMTRDDLFNINANIVKTLVEAVADNCP  202 (412)
Q Consensus       174 k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p  202 (412)
                      .+  ..+..+.+..|+.....+.+.+.+...
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~  108 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA  108 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            11  124455678899999999998887654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=8.4e-05  Score=70.81  Aligned_cols=166  Identities=12%  Similarity=0.051  Sum_probs=90.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccC--CCCcee----eecCCCcHHhhcCCC--c
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCN--TPSQVL----DFTGPEELASALKGV--N  163 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~--~~~~v~----~i~~t~d~~~al~~a--D  163 (412)
                      +|-|+||+|++|++++..|+..|.  +|+.+|....   ......+....  ....+.    +++-..++++.++++  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            444999999999999999999998  9999998531   00011111110  111122    122122344455655  9


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC-C-CeEEEEEc------CCCCCcHHHHHHHHHHhCCCCCC
Q 015172          164 VVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC-P-DAFIHIIS------NPVNSTVPIAAEVLKQKGVYDPK  233 (412)
Q Consensus       164 iVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~-p-~aiviv~T------NPv~~~~pI~t~i~~~~sg~~~~  233 (412)
                      +||.+|+....+  ..+....+..|+.....+.+.+++++ . ...||.+|      +|.+  .|+ +    +...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~--~~~-~----E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQE--IPQ-K----ETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCS--SSB-C----TTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCC--CCc-C----CCCCCCCC
Confidence            999998875322  23445556778998999999998876 3 34455443      2222  122 1    11123344


Q ss_pred             CeEeccccchHHHHHHHHHHcCCCCCCee-eeEEccc
Q 015172          234 KLFGVTTLDVVRANTFVAQKKNLKLIDVD-VPVVGGH  269 (412)
Q Consensus       234 kviGlt~Lds~R~~~~la~~l~v~~~~V~-~~ViG~h  269 (412)
                      ..-|.+=+....+-...++..+++..-++ ..|.|..
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~  190 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPR  190 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            44444322223333444566677766555 2477764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=0.00022  Score=58.36  Aligned_cols=96  Identities=18%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCC-Cc---HH-hhcCCCcEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP-EE---LA-SALKGVNVVV  166 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t-~d---~~-~al~~aDiVI  166 (412)
                      |||.|+|+ |.+|..++..|...|.  +|+++|.++.  .....++ +.      ..+.|. +|   ++ ..++++|.+|
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~~-~~------~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEI-DA------LVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC-SS------EEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhhh-hh------hhccCcccchhhhhhcChhhhhhhc
Confidence            79999998 9999999999999998  9999999872  2111111 11      111110 11   11 2468999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .+..         .|  ..|+-+    +...+.++++-++..+.|+..
T Consensus        71 ~~t~---------~d--~~N~~~----~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          71 AVTG---------KE--EVNLMS----SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             ECCS---------CH--HHHHHH----HHHHHHTTCCCEEEECSSTTH
T ss_pred             ccCC---------cH--HHHHHH----HHHHHHcCCceEEEEecCHHH
Confidence            8732         11  344422    223344666666666666654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=7.1e-05  Score=71.87  Aligned_cols=116  Identities=17%  Similarity=0.079  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhh-------------------hhhcccCCCCceeeecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVA-------------------ADLSHCNTPSQVLDFTG  151 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~-------------------~dL~~~~~~~~v~~i~~  151 (412)
                      .|||.|+||+|++|+.++..|+..|.  +|+.+|.-..  ....                   ..+.+........+++-
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCC
Confidence            38999999999999999999999998  9999994321  0000                   00111111100012211


Q ss_pred             CCcHHhhcCC--CcEEEEcCCCCCCCC--Cc---hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          152 PEELASALKG--VNVVVIPAGVPRKPG--MT---RDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       152 t~d~~~al~~--aDiVIiaag~p~k~g--~~---r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...+++++++  .|+||..|+...-+.  .+   ..+....|+.....+.+.+.++..+..++..|
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~s  144 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  144 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecc
Confidence            1223344554  499999987643211  12   23456789999999999999998877765555

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.48  E-value=0.00021  Score=60.03  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |||+|||. |.||+.+|..|...|+  +|..+|.+....... .... ..  +.     .+.++.+++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~-~~--~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RART-VG--VT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHH-HT--CE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhc-cc--cc-----ccHHHHHhhcCeEEEEe
Confidence            79999998 9999999999999998  999999875221111 1111 00  11     22456889999999994

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=6.8e-05  Score=70.39  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~  171 (412)
                      |||.|+||+|++|+.++..|+.+|.. +|+.+|.... .....  .+........+++-..+. +..++++|+||.+|+.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~~~~~~--~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFL--NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGT--TCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcchhhhc--cCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            79999999999999999988888732 8999998641 11111  111100000112211222 2367899999999886


Q ss_pred             CCCCCC--chhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          172 PRKPGM--TRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       172 p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ...+..  +....+..|+.....+++.+.+....-++
T Consensus        78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~  114 (342)
T d2blla1          78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF  114 (342)
T ss_dssp             CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEE
T ss_pred             ccccccccCCccccccccccccccccccccccccccc
Confidence            542221  22345778899999999998877654433

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.41  E-value=0.00048  Score=64.74  Aligned_cols=107  Identities=15%  Similarity=0.017  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCC-C----ceeeecCCCcHHhhcCCCcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTP-S----QVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~-~----~v~~i~~t~d~~~al~~aDiV  165 (412)
                      +.+||.|+||+|++|+.++..|+.+|.  +|+....+.. ......+.+.... .    ...++....++.++++++|.|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v   87 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence            357999999999999999999999998  8887666541 1111111111111 0    011222234555689999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      +..++... ...+.......|+....++.+.+.++.
T Consensus        88 ~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          88 AHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             EECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            99876542 334445556678888888998888764

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.40  E-value=0.00013  Score=68.74  Aligned_cols=112  Identities=16%  Similarity=0.071  Sum_probs=69.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +||||.|+||+|++|++++..|..+|.--.++.+|... .  ......+..........++.-...+.+.++++|.|+..
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            47999999999999999999999888622455555422 1  11111122111110011222223455678999999998


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          169 AGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       169 ag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                      |+......  .+..+.+..|+.....+.....+....
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k  117 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR  117 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCE
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhcccccc
Confidence            86654322  123456778999999999888887754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=0.00018  Score=58.74  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHH-hhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELA-SALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~-~al~~aDiVIiaa  169 (412)
                      +|+.|+|+ |.+|..++..|...|.  +++++|.++..  +.++.+........+.+-..-++ ..+.+||.||.+.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~--~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHH--HHHHHHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence            47899998 9999999999999999  99999998721  11222221111111111111222 2478999999884

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.38  E-value=0.00047  Score=58.24  Aligned_cols=97  Identities=12%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCC-C-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSP-L-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~g-l-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      |||+||||+|++|+-+...|.... + ..++.++--....+....+..   .. .... ...+. +.++++|+|+.+.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~---~~-~~~~-~~~~~-~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGK---DA-GMLH-DAFDI-ESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSS---CC-CBCE-ETTCH-HHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCC---cc-eeee-cccch-hhhccccEEEEecC-
Confidence            799999999999999987666532 1 237777655442222211111   11 1111 12344 36899999999953 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                                     -.+-+++++.+.+...+++|  +.|.+|
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsd   99 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAAST   99 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSST
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCcc
Confidence                           35567888888887777777  788887

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.36  E-value=0.00048  Score=64.05  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=97.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC----CCeEEEEecCchhhhhhhhcccCCCCceeee----cCCCcHHhhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL----VSALHLYDVMNVKGVAADLSHCNTPSQVLDF----TGPEELASALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl----~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i----~~t~d~~~al~~aDiV  165 (412)
                      |||.|+||+|++|+.++..|+.+|.    .++++.+|.....+....+........+..+    ...........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999998864    3578888875421111112211111112111    1112334567999999


Q ss_pred             EEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC---CcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172          166 VIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN---STVPIAAEVLKQKGVYDPKKLFGVTT  240 (412)
Q Consensus       166 Iiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~---~~~pI~t~i~~~~sg~~~~kviGlt~  240 (412)
                      |..|+.+....  ....+.+..|+.....+.+.+.++...-+|..-|.-+-   --.|+ .    +.....|....|.+-
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~-~----E~~~~~p~~~Y~~sK  155 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSW-T----ESSPLEPNSPYAASK  155 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCB-C----TTSCCCCCSHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCC-C----CCCCCCCCCHHHHHH
Confidence            99987654222  23345567899999999999988775444432222110   00011 1    111233444444432


Q ss_pred             cchHHHHHHHHHHcCCCCCCee-eeEEccc
Q 015172          241 LDVVRANTFVAQKKNLKLIDVD-VPVVGGH  269 (412)
Q Consensus       241 Lds~R~~~~la~~l~v~~~~V~-~~ViG~h  269 (412)
                      +....+-...++..+++..-++ ..|.|.+
T Consensus       156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  185 (322)
T d1r6da_         156 AGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (322)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEECcC
Confidence            2223344455677788877777 4677854

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.00031  Score=66.11  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIi  167 (412)
                      .|.|+||+|++|+.++..|+.+|.  +|+.+|....     ......+.+........++.-..++++.++  ++|+||.
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            488999999999999999999998  9999996431     111112222221111112221123333333  7899999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|+.+..+  .+........|......+.+...+.....++..-|
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            98765321  22334556788888999999998877565554443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.29  E-value=0.0002  Score=62.55  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=55.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|.|+||+|.+|..++..++..|.  +|++.|++.  ....+..+... .......++....+.++.+.++|+||.++
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~A  100 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  100 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecC
Confidence            47899999999999999999999998  999999986  22222233221 11111223333356677899999999998


Q ss_pred             CCC
Q 015172          170 GVP  172 (412)
Q Consensus       170 g~p  172 (412)
                      |.+
T Consensus       101 g~g  103 (191)
T d1luaa1         101 AIG  103 (191)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            864

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.0027  Score=58.39  Aligned_cols=66  Identities=11%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172          322 YAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE  393 (412)
Q Consensus       322 ~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~  393 (412)
                      -.++++|++|..|   .+.++.+.+.+.+    +|++.++-+||+|+++|+..+--   .+|.+....++...+..
T Consensus       146 e~a~~ii~ai~~~---~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~---g~lP~~~~~Li~~~~~~  215 (270)
T d1s6ya2         146 DAACSLISSIYND---KRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV---GDLPVAVRGLVQQIKSF  215 (270)
T ss_dssp             HHHHHHHHHHHHT---CCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC---BCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec---CCCcHHHHHHHHHHHHH
Confidence            4688999999999   4566666666655    46777999999999999999765   78999988877664443

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.0038  Score=56.89  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCCCCCeeeeEEcccC----------Cccccccccc-C------C----------------CCCC----CC
Q 015172          246 ANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPLLSK-T------M----------------PSVS----FT  288 (412)
Q Consensus       246 ~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~~S~-~------~----------------p~~~----~~  288 (412)
                      +.+.+|+.+|++.++|+..+.|-||          |.+.+|.+.. .      .                |...    +.
T Consensus         6 ~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~Yy~~   85 (253)
T d1up7a2           6 FIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLM   85 (253)
T ss_dssp             HHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGGGHHHHT
T ss_pred             HHHHHHHHhCCCHHHcEEEEEEECChhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcccchhhcC
Confidence            5788999999999999999999987          6677773311 0      0                1100    01


Q ss_pred             hHH-H-----------------HHHHHHHhhcc--chhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec
Q 015172          289 DEE-V-----------------GDLTVRIQNAG--TEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE  348 (412)
Q Consensus       289 ~~~-~-----------------~~l~~~v~~~g--~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~  348 (412)
                      .++ +                 .++.+..++..  .+-+..+   +...++  -.++++|++|..|   ++.++.+.+.+
T Consensus        86 ~~~~~~~~~~~~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~--e~a~~ii~ai~~~---~~~~~~vNv~N  157 (253)
T d1up7a2          86 EKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKR---GGSMYS--TAAAHLIRDLETD---EGKIHIVNTRN  157 (253)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGS---TTTTHH--HHHHHHHHHHHSS---SCEEEEEEEEC
T ss_pred             cHHHHHHhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhc---cCcchH--HHHHHHHHHHHcC---CCcEEEEeCCC
Confidence            111 0                 12223333211  1112222   334444  4689999999998   45666666666


Q ss_pred             CC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHH
Q 015172          349 SN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL  390 (412)
Q Consensus       349 ~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~s  390 (412)
                      .+    ++++.++-+||.|+++|+..+--   .+|.+....++..-
T Consensus       158 ~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~---g~lP~~~~~Li~~~  200 (253)
T d1up7a2         158 NGSIENLPDDYVLEIPCYVRSGRVHTLSQ---GKGDHFALSFIHAV  200 (253)
T ss_dssp             TTSSTTSCTTCEEEEEEEEETTEEEEBCC---CCCCHHHHHHHHHH
T ss_pred             cCcCCCCChhhheEEEEEecCCccccccc---CCCcHHHHHHHHHH
Confidence            55    46777999999999999999765   78998877766553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.00027  Score=61.27  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec--CchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di--~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .|++|.|+||+|++|..++..|+..|.  ++.++|.  ++..  ..++... ......++....++.++++++|.||.++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~--~v~v~~~~R~~~~--~~~~~~~-~~~~~~d~~~~~~~~~~~~~~d~vi~~a   76 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSD--KFVAKGLVRSAQG--KEKIGGE-ADVFIGDITDADSINPAFQGIDALVILT   76 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTT--TCEEEEEESCHHH--HHHTTCC-TTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--cEEEEEEcCCHHH--HHhccCC-cEEEEeeeccccccccccccceeeEEEE
Confidence            367999999999999999999999986  5455544  3311  1112111 1111112222234566899999999988


Q ss_pred             CCCCCCC---------------CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          170 GVPRKPG---------------MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       170 g~p~k~g---------------~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      +....+.               .........|..-.+.++.........-..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          77 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             eeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            7532110               011223344555666677666666644333

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.10  E-value=0.00023  Score=60.01  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |||+|||++|.||.++|..|+..|.  +|+++++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999996569999999999999999  999999987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.06  E-value=0.00035  Score=58.76  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||.|||| |.||..+|..|...|+  +|+++|++..  ...+.++.....  ...........++.+...|++|.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~~a~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLESAKKLSAGVQHSTP--ISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHHHHHHHHTTCTTEEE--EECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChHHHHHHHhccccccc--ccccccchhhhHhhhhccceeEeec
Confidence            368999998 9999999999999998  9999999873  222222221110  0011111123445688999988763

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.04  E-value=1.4e-05  Score=73.45  Aligned_cols=129  Identities=10%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             cCChhHHHHHHhhhhhhhhhhccCC-CCCCCCCCCceEEEEcCCCC--cHHHHHH------HHHhCCCCCeEEEEecCch
Q 015172           60 FLNKESCSALRSTFARKAQSSEQRP-QYALQPQASFKVAVLGAAGG--IGQPLAL------LIKMSPLVSALHLYDVMNV  130 (412)
Q Consensus        60 ~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~KV~VIGAaG~--vG~~iA~------~l~~~gl~~ev~L~Di~~~  130 (412)
                      +.|.+.++-+++ |+..++.+++.+ |   ......++.|+|| |.  ||.+++.      .+++.|.  .|++.|++..
T Consensus        10 ~~~~~~a~gi~~-f~~~~~~~~~~~~~---~~a~~~~~~~~ga-gl~~~~~gi~~v~vs~~~fa~~g~--~v~~~d~d~~   82 (242)
T d2b0ja2          10 CYRTHAAAGITN-FMRACEVAKEVGKP---EIALTHSSITYGA-ELLHLVPDVKEVIVSDPCFAEEPG--LVVIDEFDPK   82 (242)
T ss_dssp             CSHHHHHHSSCC-CHHHHHHHHHHTCG---GGGGCCHHHHHHH-HHHHHCTTCCEEEEECGGGGSSSE--EEECCCSCHH
T ss_pred             cccchhhhccHH-HHHHHhhhccCCCC---ccceeeeeeeeee-cHHhhhhchhhhhccchhhhhcCC--eEEEEeCCHH
Confidence            444444444455 555555555543 3   2222346889998 97  7777765      3567777  8999999841


Q ss_pred             -------hhhhhh-------h-----cccC--CCCcee-------eecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhH
Q 015172          131 -------KGVAAD-------L-----SHCN--TPSQVL-------DFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDL  182 (412)
Q Consensus       131 -------~g~~~d-------L-----~~~~--~~~~v~-------~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl  182 (412)
                             .+....       +     ....  ....+.       .+..++|..+++++||+||++...+          
T Consensus        83 ~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~----------  152 (242)
T d2b0ja2          83 EVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG----------  152 (242)
T ss_dssp             HHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC----------
T ss_pred             HHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH----------
Confidence                   111111       1     0000  010111       1223467788999999999994211          


Q ss_pred             HHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          183 FNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       183 ~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                           +++++++++|.++. |+++++..|
T Consensus       153 -----~~v~~Vi~~I~~~l~~g~Iiid~S  176 (242)
T d2b0ja2         153 -----NKQPDIIKKFADAIPEGAIVTHAC  176 (242)
T ss_dssp             -----TTHHHHHHHHGGGSCTTCEEEECS
T ss_pred             -----HHHHHHHHHHHhhCCCCcEEEecC
Confidence                 44667778888888 677774443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.00  E-value=0.00047  Score=64.45  Aligned_cols=115  Identities=17%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhccc-CCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC-NTPSQVLDFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~--~aDiVIi  167 (412)
                      .+||.|+||+|++|+.++..|+..|.  +|+.+|.+..  .......... .......+++-...+.++++  ..|+|+.
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~   85 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   85 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence            47999999999999999999999998  9999998752  1111111100 01111112211112233444  4588888


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          168 PAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       168 aag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      +++.+....  ..-.+....|+.....+...+.+.....+++..
T Consensus        86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~  129 (356)
T d1rkxa_          86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNI  129 (356)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEE
T ss_pred             hhccccccccccCCccccccccccchhhhhhhhccccccccccc
Confidence            876542111  112334566888888999998887755555333

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.99  E-value=0.00044  Score=65.89  Aligned_cols=113  Identities=18%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc----------h-hhhhhhhccc--C----CCCceeeecCC-C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN----------V-KGVAADLSHC--N----TPSQVLDFTGP-E  153 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~----------~-~g~~~dL~~~--~----~~~~v~~i~~t-~  153 (412)
                      -|||-|+||+|++|+.++..|+. .+.  +|+.+|.-.          . ......+.+.  .    ....+..+.+. .
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            37999999999999999987775 687  999999521          1 1111111111  1    01111111110 1


Q ss_pred             c---HHh---hcCCCcEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHhhCCCeEEE
Q 015172          154 E---LAS---ALKGVNVVVIPAGVPRKPGM--TRDDLFNINANIVKTLVEAVADNCPDAFIH  207 (412)
Q Consensus       154 d---~~~---al~~aDiVIiaag~p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~aivi  207 (412)
                      |   +++   ..+++|+||.+|+....+..  ........|......+.....+..+..++.
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~  141 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIF  141 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccc
Confidence            2   222   23678999999875432211  223446778999999999998887655543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.97  E-value=0.00048  Score=60.04  Aligned_cols=88  Identities=25%  Similarity=0.274  Sum_probs=59.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.+|..++..+...|.  +|..+|....++          ..  .   ...++++.+++||+|++..  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~----------~~--~---~~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG----------PW--R---FTNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS----------SS--C---CBSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--cccccccccccc----------ce--e---eeechhhhhhccchhhccc--
Confidence            4578999998 9999999999888898  999999864210          00  0   1235678899999999974  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..+. ++ .++  |.       +.+....|++++|+++
T Consensus       101 pl~~~-t~-~li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         101 PLNKH-TR-GLV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCSTT-TT-TCB--CH-------HHHTTSCTTCEEEECS
T ss_pred             ccccc-cc-ccc--cc-------ceeeeccccceEEecc
Confidence            33321 11 111  21       2233334899999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.87  E-value=0.00097  Score=57.39  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++.||.|||| |.+|..-+..+...|-  +|..+|.+. ...+..+......   ...+.....+++.+++||+||-++
T Consensus        30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~~~---~~~~~~~~~l~~~~~~aDivI~aa  103 (168)
T d1pjca1          30 VKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSRV---ELLYSNSAEIETAVAEADLLIGAV  103 (168)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGS---EEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcccc---eeehhhhhhHHHhhccCcEEEEee
Confidence            45689999999 9999999988888887  999999987 3333333322211   111222345677899999999998


Q ss_pred             CCCCC
Q 015172          170 GVPRK  174 (412)
Q Consensus       170 g~p~k  174 (412)
                      -.|-+
T Consensus       104 lipG~  108 (168)
T d1pjca1         104 LVPGR  108 (168)
T ss_dssp             CCTTS
T ss_pred             ecCCc
Confidence            77654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0008  Score=51.79  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||+|+|. |..|.++|..|...|.  +|.++|.+.......++.+.     ...+.+..+ .+.+.+.|+||.+-|.|
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPEA-----VERHTGSLN-DEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCTT-----SCEEESBCC-HHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhhc-----cceeecccc-hhhhccCCEEEECCCCC
Confidence            468999998 9999999999999998  99999987522111222221     111222222 34688999999997776


Q ss_pred             C
Q 015172          173 R  173 (412)
Q Consensus       173 ~  173 (412)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0022  Score=59.29  Aligned_cols=65  Identities=9%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172          322 YAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP  392 (412)
Q Consensus       322 ~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~  392 (412)
                      -.+++++++|..|   ++.++.+.+.+.+    ++++.++-+||.|+++|+..+--   .+|.+....+++.-+.
T Consensus       153 e~av~ii~ai~~~---~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~---g~lP~~~~~Li~~~k~  221 (276)
T d1u8xx2         153 SYIVDLARAIAYN---TGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV---GTIPQFQKGLMEQQVS  221 (276)
T ss_dssp             HHHHHHHHHHHHT---CCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC---BCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec---CCCcHHHHHHHHHHHH
Confidence            3578999999998   3566666666655    46777999999999999999765   7899888777765433

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.79  E-value=0.001  Score=57.93  Aligned_cols=106  Identities=12%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ++||.|+||+|++|..++..|...|...+|+..-.+....    ....  .....++.  ........++|.||.++|..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----~~~~--~~~~~d~~--~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----HPRL--DNPVGPLA--ELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----CTTE--ECCBSCHH--HHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----cccc--cccccchh--hhhhccccchheeeeeeeee
Confidence            4799999999999999999999998744555554332110    0000  00011110  01122335689999998876


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ........++...|......+++..++....-++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          74 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccccccccchhhhhhhcccccccccccccc
Confidence            4333344556667777778888887775544443

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.77  E-value=0.0012  Score=59.62  Aligned_cols=78  Identities=17%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhh---hcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAAD---LSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~d---L~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      +++||.|+||+|++|..++..|+..|.  +|+.++.+..   ......   +.+........++....+..+.++++|.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~   79 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVV   79 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchh
Confidence            357899999999999999999999998  9999987651   111111   11111110001122223445678999999


Q ss_pred             EEcCCC
Q 015172          166 VIPAGV  171 (412)
Q Consensus       166 Iiaag~  171 (412)
                      +..++.
T Consensus        80 ~~~~~~   85 (312)
T d1qyda_          80 ISALAG   85 (312)
T ss_dssp             EECCCC
T ss_pred             hhhhhh
Confidence            998654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=96.70  E-value=0.0014  Score=62.14  Aligned_cols=106  Identities=17%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhcC--CCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASALK--GVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~--~aDiVIi  167 (412)
                      |||.|+||+|++|+.++..|+..|. ..|+++|.....+....+.+......+.    +++-..++.+.++  ++|+||.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            7999999999999999999999886 2467788654212112222221111222    2211112333333  6899999


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhh
Q 015172          168 PAGVPRKPG--MTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       168 aag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      +|+.+..+-  .+..+.+..|+.....+...+.++
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~  114 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKY  114 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            987542111  122445677777777777776654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.0052  Score=51.28  Aligned_cols=90  Identities=18%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k  174 (412)
                      ||++||. |.||.++|..|...+.  .++ +|....+.  .++..... . ..     ... +.+.++|++|...-    
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~~~--~~~~~~~~-~-~~-----~~~-~~~~~~~~~i~~~~----   63 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFEKA--LRHQEEFG-S-EA-----VPL-ERVAEARVIFTCLP----   63 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTHHH--HHHHHHHC-C-EE-----CCG-GGGGGCSEEEECCS----
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHHHH--HHHHHHcC-C-cc-----ccc-ccccceeEEEeccc----
Confidence            8999998 9999999999998886  554 55443221  12222111 1 11     122 35788999998731    


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172          175 PGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN  214 (412)
Q Consensus       175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~  214 (412)
                                 +.+.+......+.... ++.+++. +.+.+
T Consensus        64 -----------~~~~v~~~~~~l~~~~~~~~~iid-~sT~~   92 (156)
T d2cvza2          64 -----------TTREVYEVAEALYPYLREGTYWVD-ATSGE   92 (156)
T ss_dssp             -----------SHHHHHHHHHHHTTTCCTTEEEEE-CSCCC
T ss_pred             -----------chhhhhhhhccccccccccccccc-cccCC
Confidence                       2234455566666666 5555543 44555

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.67  E-value=0.0028  Score=58.10  Aligned_cols=115  Identities=17%  Similarity=0.024  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCC-CcHH---hhc--CCCcEEEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP-EELA---SAL--KGVNVVVI  167 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t-~d~~---~al--~~aDiVIi  167 (412)
                      +||-|+||+|++|+.++..|+.+|.  +|+.+|..........+.+......+..+.+. .|..   +.+  ...|+++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999999999998  99999986521111111111111112111110 1221   112  24566776


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++......  .....+.+..|+.....+.+.+.++.+..+++..|
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S  123 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  123 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence            66543221  12344557778888899999999888666655543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0032  Score=56.78  Aligned_cols=114  Identities=17%  Similarity=0.219  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCC---cHHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPE---ELASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~---d~~~al~~aDiVIi  167 (412)
                      .+++.|+||++.+|..+|..++..|.  .|++.|+++  +.....++....  ...-+++-..   ..-+.+..-|++|.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~--~~~~Dv~d~~~v~~~~~~~g~iDilVn   82 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE--PVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE--EEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe--EEEEeCCCHHHHHHHHHHhCCceEEEe
Confidence            36788889999999999999999998  999999986  222223332211  0000111111   11234678999999


Q ss_pred             cCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRK-P--GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k-~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||.... +  ..+..   ..+..|+.    +.+.+.+.+.+....+.|++++
T Consensus        83 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~is  135 (244)
T d1pr9a_          83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS  135 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             ccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecc
Confidence            9987542 2  12222   23444443    5566666554444456665554

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0019  Score=60.27  Aligned_cols=111  Identities=19%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--------h---hhhhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--------V---KGVAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--------~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      +||.|+||+|++|+.++..|+..|.  +|+.+|...        .   ......+..........+++-...+++.+.+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence            5899999999999999999999998  999998532        0   00011111111110001121112233344444


Q ss_pred             --cEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          163 --NVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       163 --DiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                        |+|+..|+.+....  ....+.+..|+.....+...+.++...-++
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence              46666776543111  134555778888888899988887755444

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.58  E-value=0.00096  Score=58.65  Aligned_cols=92  Identities=23%  Similarity=0.301  Sum_probs=59.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||. |.+|..+|..+...|.  +|..||............       +.   ...++++.++.||+|++....
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~---~~~~l~~ll~~sD~i~~~~pl  114 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQ---RVSTLQDLLFHSDCVTLHCGL  114 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CE---ECSSHHHHHHHCSEEEECCCC
T ss_pred             eCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------cc---cccchhhccccCCEEEEeecc
Confidence            3579999998 9999999999988888  999999864211111100       11   134677888999999998532


Q ss_pred             -CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          172 -PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       172 -p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                       +...++       -|.+.       +...-|++++|+++
T Consensus       115 t~~T~~l-------i~~~~-------l~~mk~~a~lIN~s  140 (193)
T d1mx3a1         115 NEHNHHL-------INDFT-------VKQMRQGAFLVNTA  140 (193)
T ss_dssp             CTTCTTS-------BSHHH-------HTTSCTTEEEEECS
T ss_pred             cccchhh-------hhHHH-------HhccCCCCeEEecC
Confidence             211121       12221       22233899999986

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.0036  Score=56.40  Aligned_cols=114  Identities=17%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCc---HHhhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEE---LASALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d---~~~al~~aDiVIi  167 (412)
                      .+++.|+||++.+|..+|..|+..|.  .|++.|+++  +.....++.....  ...+++-..+   .-+.+..-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~Dv~~~~~v~~~~~~~g~iDilVn   80 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIEP--VCVDLGDWDATEKALGGIGPVDLLVN   80 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEE--EECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeE--EEEeCCCHHHHHHHHHHcCCCeEEEE
Confidence            36788889999999999999999998  999999986  2222223322110  0001111111   1123568999999


Q ss_pred             cCCCCCC-C--CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          168 PAGVPRK-P--GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       168 aag~p~k-~--g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .||.... +  ..+..   ..+..|+    .+.+.+.+.+.+....+.+|+++
T Consensus        81 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~is  133 (242)
T d1cyda_          81 NAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS  133 (242)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccc
Confidence            9987542 2  12222   2233343    34555666555444455555554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00095  Score=58.19  Aligned_cols=115  Identities=19%  Similarity=0.230  Sum_probs=69.3

Q ss_pred             HhhhhhhhhhhccCC-CCCCCC--CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCce
Q 015172           70 RSTFARKAQSSEQRP-QYALQP--QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV  146 (412)
Q Consensus        70 ~~~f~~~~~~~~~~~-~~~~~~--~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v  146 (412)
                      |+++...++.+++.- .....+  -..++|+|+|. |.+|..+|..+...|.  +|..+|.......         .. .
T Consensus        18 R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~-~   84 (188)
T d1sc6a1          18 RGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL---------GN-A   84 (188)
T ss_dssp             HTHHHHHHHHHHTCCC-----CCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC---------TT-C
T ss_pred             hChHHHHHHHHhCCCcccccccccccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh---------hh-h
Confidence            666665555544332 111111  24579999998 9999999998888888  9999997531100         00 1


Q ss_pred             eeecCCCcHHhhcCCCcEEEEcCCCC-CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172          147 LDFTGPEELASALKGVNVVVIPAGVP-RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN  214 (412)
Q Consensus       147 ~~i~~t~d~~~al~~aDiVIiaag~p-~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~  214 (412)
                      .   ...++++.++.||+|++..... ...++       -|.+    .   +....+++++|+++  +-+|
T Consensus        85 ~---~~~~l~ell~~sDii~i~~plt~~T~~l-------i~~~----~---l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          85 T---QVQHLSDLLNMSDVVSLHVPENPSTKNM-------MGAK----E---ISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             E---ECSCHHHHHHHCSEEEECCCSSTTTTTC-------BCHH----H---HHHSCTTEEEEECSCSSSBC
T ss_pred             h---hhhhHHHHHhhccceeecccCCcchhhh-------ccHH----H---HhhCCCCCEEEEcCcHHhhh
Confidence            1   1246778899999999986422 11121       1222    2   22234799999986  4455

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.56  E-value=0.0016  Score=55.35  Aligned_cols=70  Identities=26%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+||.|||+ |.||..++..|...|. .++.++.....+  ..+.++.     .....   -.++.+.+.++|+||.+.+
T Consensus        24 ~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~-----~~~~~---~~~~~~~l~~~Divi~ats   93 (159)
T d1gpja2          24 DKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG-----GEAVR---FDELVDHLARSDVVVSATA   93 (159)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT-----CEECC---GGGHHHHHHTCSEEEECCS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh-----ccccc---chhHHHHhccCCEEEEecC
Confidence            468999998 9999999999998885 579999887522  2222221     11111   2466778999999999977


Q ss_pred             CC
Q 015172          171 VP  172 (412)
Q Consensus       171 ~p  172 (412)
                      .|
T Consensus        94 s~   95 (159)
T d1gpja2          94 AP   95 (159)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.54  E-value=0.0011  Score=59.32  Aligned_cols=76  Identities=21%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhh---cccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADL---SHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL---~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ++||.|+||+|++|++++..|...|.  +|+.+|++..    ......+   ..........++....+..+.++++|.|
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v   80 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence            47999999999999999999999998  9999998751    1111111   1111110001111122344678999999


Q ss_pred             EEcCC
Q 015172          166 VIPAG  170 (412)
Q Consensus       166 Iiaag  170 (412)
                      |..++
T Consensus        81 i~~~~   85 (307)
T d1qyca_          81 ISTVG   85 (307)
T ss_dssp             EECCC
T ss_pred             eeccc
Confidence            98865

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.0048  Score=55.07  Aligned_cols=108  Identities=22%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|+++.  +....+...+.....+      ....+.+...|++|..||
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~l~~~~~~~~~~Dv~~~~------~~~~~~~g~iD~lVnnAG   75 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEELLKRSGHRYVVCDLRKDL------DLLFEKVKEVDILVLNAG   75 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHTCSEEEECCTTTCH------HHHHHHSCCCSEEEECCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHhcCCcEEEcchHHHH------HHHHHHhCCCcEEEeccc
Confidence            46788999999999999999999998  9999999862  1111111111110101      123346789999999999


Q ss_pred             CCCCCC---Cchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEE
Q 015172          171 VPRKPG---MTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       171 ~p~k~g---~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      .+....   .+..+   .+..|+    .+.+.+.+.+.+.. .+.+|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i  123 (234)
T d1o5ia_          76 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAI  123 (234)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEE
T ss_pred             ccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-ccccccc
Confidence            764321   22222   233443    35566666666543 3444444

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.53  E-value=0.011  Score=53.39  Aligned_cols=115  Identities=29%  Similarity=0.403  Sum_probs=69.2

Q ss_pred             ceEE-EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCC
Q 015172           94 FKVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKG  161 (412)
Q Consensus        94 ~KV~-VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~  161 (412)
                      +||+ |+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.+.....  ...+++-..       ...+.+..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG   78 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            4774 559999999999999999998  999999987  333344444322110  000111111       11234578


Q ss_pred             CcEEEEcCCCCCC-C--CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-P--GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-~--g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..||.... +  .++..   ..+..|+    .+.+...+.+.+....+.|++++
T Consensus        79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~is  137 (255)
T d1gega_          79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINAC  137 (255)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcccccccccc
Confidence            9999999987532 2  12222   2344454    44556666666666677776665

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.50  E-value=0.0026  Score=59.17  Aligned_cols=171  Identities=16%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhhhcccCCCCceeeecC----CCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAADLSHCNTPSQVLDFTG----PEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~dL~~~~~~~~v~~i~~----t~d~~~al~~aD  163 (412)
                      +++|-|+||+|++|+.++..|...|.  +|..+|... .    ......+........+..+.+    .........+.|
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~   93 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD   93 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence            46899999999999999999999999  999999633 1    111111111000001111111    112234568889


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC---CcHHHHHHHHHHhCCCCCCCeEec
Q 015172          164 VVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN---STVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       164 iVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~---~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      .|+.++....-+  ..+..+.+..|+.....+.+.+.+.....+|..-|..+-   .-.|+ +    +..-..|....|.
T Consensus        94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~----E~~~~~p~~~Y~~  168 (341)
T d1sb8a_          94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPK-V----EDTIGKPLSPYAV  168 (341)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSB-C----TTCCCCCCSHHHH
T ss_pred             ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCc-c----CCCCCCCCCcchH
Confidence            988886543221  223455678899999999999988765566644442110   00111 1    1111334445555


Q ss_pred             cccchHHHHHHHHHHcCCCCCCee-eeEEcccC
Q 015172          239 TTLDVVRANTFVAQKKNLKLIDVD-VPVVGGHA  270 (412)
Q Consensus       239 t~Lds~R~~~~la~~l~v~~~~V~-~~ViG~hg  270 (412)
                      +-+...++-...++..+++..-++ ..|.|.+.
T Consensus       169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~  201 (341)
T d1sb8a_         169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  201 (341)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence            433344555556677788877777 34777753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.48  E-value=0.0015  Score=58.61  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~  171 (412)
                      |||.|+||+|++|+.++..|..+|+  +|+..|.++.     |+.+.            .+.++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999999998  9999987541     22111            11223333  67999998765


Q ss_pred             CCCCC--CchhhHHHhhHHHHHHHHHHHHhh
Q 015172          172 PRKPG--MTRDDLFNINANIVKTLVEAVADN  200 (412)
Q Consensus       172 p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~  200 (412)
                      .....  .........|......+.......
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~   93 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSV   93 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccccccccchhhcccccccccccccccccc
Confidence            42111  122333445555555555555443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.015  Score=52.53  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=70.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCC-------cHHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPE-------ELASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~-------d~~~al~  160 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  .+..+.++.....+..+.    +++-..       ...+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4577889999999999999999998  999999986  333344444332211111    111111       1223467


Q ss_pred             CCcEEEEcCCCCC-CCC--Cch---hhHHHhh----HHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR-KPG--MTR---DDLFNIN----ANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~-k~g--~~r---~dl~~~N----~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .-|++|..||... .+-  .+.   ...+..|    .-+.+.+++.+.+.. .++.||+++
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~is  149 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ  149 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence            8999999998753 221  222   2223344    445566777776665 456666664

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.41  E-value=0.004  Score=56.33  Aligned_cols=115  Identities=16%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce-eeecCCC-------cHHhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTGPE-------ELASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v-~~i~~t~-------d~~~al~~aD  163 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.....-..+ .+++-..       ...+.+-.-|
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            4566779999999999999999998  999999986  23233333221100000 0111111       1123456899


Q ss_pred             EEEEcCCCCCC-C--CCchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.... +  ..+..+   .+..|+    .+.+..++.+.+....+.||+++
T Consensus        85 iLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~is  141 (251)
T d1zk4a1          85 TLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMS  141 (251)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEEC
T ss_pred             EEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeee
Confidence            99999987432 2  123322   344444    35566666666655566776665

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.36  E-value=0.0018  Score=56.43  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|+|. |.+|..++..+...|.  +|..+|.... .....+..       ..   ...++++.+++||+|++..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~---~~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LT---WHATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CE---ECSSHHHHGGGCSEEEECS
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------cc---ccCCHHHHHHhccchhhcc
Confidence            4579999998 9999999998888888  9999998642 11111110       11   1245678899999999985

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.35  E-value=0.0016  Score=57.05  Aligned_cols=66  Identities=20%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.+|..+|..+...|.  ++..||.......... ...     ..   ...++++.++.||+|++..
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~-~~~-----~~---~~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEA-SYQ-----AT---FHDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHH-HHT-----CE---ECSSHHHHHHHCSEEEECC
T ss_pred             cccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhh-ccc-----cc---ccCCHHHHHhhCCeEEecC
Confidence            3579999998 9999999998888888  9999998642111110 000     11   1245777899999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.33  E-value=0.0015  Score=56.87  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      -..++|+|+|. |.+|..++..+..-|.  +|..||.........+..       .. +   .++++.++.||+|++...
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~-~---~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IE-L---LSLDDLLARADFISVHLP  107 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------ce-e---ccHHHHHhhCCEEEEcCC
Confidence            44579999998 9999999998887787  999999764222211110       11 1   356778999999999852


Q ss_pred             C-CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172          171 V-PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVNSTVPIAAEVLKQKGVYDPKKLFGV  238 (412)
Q Consensus       171 ~-p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~~~~pI~t~i~~~~sg~~~~kviGl  238 (412)
                      . +...++       -|.+.       +...-|++++|+++  .-+|      .+.+.++  +...++.|.
T Consensus       108 lt~~T~~l-------in~~~-------l~~mk~~a~lIN~sRG~iVd------e~aL~~a--L~~~~i~~a  156 (184)
T d1ygya1         108 KTPETAGL-------IDKEA-------LAKTKPGVIIVNAARGGLVD------EAALADA--ITGGHVRAA  156 (184)
T ss_dssp             CSTTTTTC-------BCHHH-------HTTSCTTEEEEECSCTTSBC------HHHHHHH--HHTSSEEEE
T ss_pred             CCchhhhh-------hhHHH-------HhhhCCCceEEEecchhhhh------hHHHHHH--HhcCcEeEE
Confidence            1 211121       12221       22233899999986  3345      2333333  445566554

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.048  Score=50.57  Aligned_cols=56  Identities=11%  Similarity=0.162  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEee-cCCCCCCCHHHHH
Q 015172          324 AARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLI-SSDLQGLTEYEQK  385 (412)
Q Consensus       324 ~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~-~~~l~~Lse~E~~  385 (412)
                      ++++|++|.+|   ++.++.+.+.+.+    ++++.++-+||+|+++|+..+- .   ..|.+.-++
T Consensus       184 a~~ii~ai~~~---~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~---~~lP~~~~~  244 (308)
T d1obba2         184 HIPFIDALLND---NKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIE---PPLPDRVVK  244 (308)
T ss_dssp             HHHHHHHHHHC---CCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCS---SCCCHHHHH
T ss_pred             HHHHHHHHHcC---CCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecC---CCCChHHHH
Confidence            78999999999   4567777776665    4667789999999999999974 3   467776554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.28  E-value=0.0021  Score=55.67  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +..||+||||+|++|+-+...|..++.+ ||..+--+.  .+....-..+... .....+.  ....+.++++|+|+.+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLIT-QDLPNLV--AVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTT-SCCCCCB--CGGGCCGGGCSEEEECC
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccc-cccccch--hhhhhhhcccceeeecc
Confidence            4579999999999999999999988754 666664333  2211111111111 1111111  11223578999999984

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.26  E-value=0.0081  Score=54.57  Aligned_cols=114  Identities=19%  Similarity=0.245  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce-eeecCCCcH-------HhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTGPEEL-------ASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v-~~i~~t~d~-------~~al~~aD  163 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++........+ .+++-..+.       .+.+...|
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            5677779999999999999999998  999999987  33334444332110000 011111111       12356899


Q ss_pred             EEEEcCCCCC-CC----CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPR-KP----GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~-k~----g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||... .+    ..+.+   ..+..|+    -+.+.+.+.+.+.. .+.+++++
T Consensus        85 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~is  142 (268)
T d2bgka1          85 IMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTA  142 (268)
T ss_dssp             EEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEEC
T ss_pred             eeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccc
Confidence            9999998643 22    12222   2234454    34555555555443 44444444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=96.23  E-value=0.0022  Score=57.56  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=57.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV  171 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~  171 (412)
                      |||.|+||+|++|++++..|...|   +++..|..... ...|+.+            ..++++.++  +.|+||.+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999998887777   45556654311 1111111            112333444  45999999875


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          172 PRK--PGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       172 p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ...  ...........|......+....++..
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~   96 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG   96 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             ccccccccCccccccccccccccchhhhhccc
Confidence            421  122334455677777777777776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.21  E-value=0.0024  Score=56.20  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ..++|+|||. |.+|..+|..+..-|.  +|..||.........   + .    .    ...++++.++.||+|++..
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~----~----~~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-G----Y----YVDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-T----C----BCSCHHHHHHHCSEEEECS
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-e----e----eeccccccccccccccccC
Confidence            3579999998 9999999999988888  999999764211111   0 0    1    1235777899999999985

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.20  E-value=0.0058  Score=53.04  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=51.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCC----------------Ccee-ee--cC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTP----------------SQVL-DF--TG  151 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~----------------~~v~-~i--~~  151 (412)
                      ++-||.|||| |.+|..-+......|-  .|..+|++. .+.+..++......                ..+. .+  ..
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            3579999998 9999998888888887  999999987 33344333321100                0000 00  00


Q ss_pred             CCcHHhhcCCCcEEEEcCCCCCC
Q 015172          152 PEELASALKGVNVVVIPAGVPRK  174 (412)
Q Consensus       152 t~d~~~al~~aDiVIiaag~p~k  174 (412)
                      ...+.+.+++||+||-++-.|-+
T Consensus       105 ~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTS
T ss_pred             HHHHHHHHHhhhhheeeeecCCc
Confidence            12244568999999999877643

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.005  Score=52.40  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=42.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      ..+||+|.|++|.||+.++..+...+-+ +| ..+|.......-.|+......... .+..+.|+++.++++|+||-.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKT-GVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCC-SCCEESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccC-CceeeccHHHHhcccceEEEe
Confidence            3589999998899999999888776421 33 345543211111122221100001 111235666678999998875

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.16  E-value=0.0033  Score=54.31  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      |+||+|+||+|++|.-+...|...+.+ +|..+=-+...|...+-.+....... .+. ..+.++..+++|+|+.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~-~~~-~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENS-ILS-EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCC-BCB-CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhccc-ccc-ccCHhHhccccceEEEccc
Confidence            689999999999999999999888754 55444222211211111111111101 111 2345555578999999853

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.13  E-value=0.01  Score=49.27  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=43.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +|||+|+||+|++|.-+...|.++++ ..++.++--....|......+.  ...+..    .+. +.+.++|+|+.+.+
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~--~~~~~~----~~~-~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAES--SLRVGD----VDS-FDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTE--EEECEE----GGG-CCGGGCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccc--cchhcc----chh-hhhccceEEEecCC
Confidence            58999999999999999988875432 3478877554422221111111  011111    122 35789999999853

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.049  Score=48.72  Aligned_cols=116  Identities=23%  Similarity=0.315  Sum_probs=68.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCc-------HHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEE-------LASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d-------~~~al~~a  162 (412)
                      +-+.|+||++.+|..+|..++..|.  .|++.|+++  ++..+.++.......  ..-+++-..+       ..+.+...
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            4566779999999999999999998  999999987  333344443322110  0001111011       11246789


Q ss_pred             cEEEEcCCCCCCCCC--ch----hhHHHhh----HHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          163 NVVVIPAGVPRKPGM--TR----DDLFNIN----ANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       163 DiVIiaag~p~k~g~--~r----~dl~~~N----~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      |++|..+|.......  ..    .+.+..|    .-+.+.+.+.+.+.. .+.|++++-.
T Consensus        86 dilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~  144 (244)
T d1yb1a_          86 SILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASA  144 (244)
T ss_dssp             SEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCC
T ss_pred             ceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecc
Confidence            999999987643221  11    1223333    456667777776654 5666555433

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.10  E-value=0.0045  Score=53.14  Aligned_cols=73  Identities=16%  Similarity=0.212  Sum_probs=42.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhccc----CCCCceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHC----NTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~----~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      |+||+|+||+|++|+-+...|..++.+ ||.-+-...   ..|....-.+.    .........   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            689999999999999999999998643 544332211   11111111111    111112222   2334457899999


Q ss_pred             EEcC
Q 015172          166 VIPA  169 (412)
Q Consensus       166 Iiaa  169 (412)
                      +.+.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9984

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.024  Score=51.00  Aligned_cols=113  Identities=18%  Similarity=0.238  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCC--ceeeecCCCc-------HHhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPS--QVLDFTGPEE-------LASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~--~v~~i~~t~d-------~~~al~~  161 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  +...+.++.+.. ...  ...+++-..+       ..+.+..
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5677889999999999999999998  999999986  233333343221 110  0001111111       1233568


Q ss_pred             CcEEEEcCCCCCC-CC--Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEE
Q 015172          162 VNVVVIPAGVPRK-PG--MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHI  208 (412)
Q Consensus       162 aDiVIiaag~p~k-~g--~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv  208 (412)
                      .|++|..||.... +-  .+..   ..+..|+    .+.+.+++.+.+.....||.+
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i  140 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINI  140 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccc
Confidence            9999999997542 21  2222   2344454    445555555554433344444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.08  E-value=0.0075  Score=54.53  Aligned_cols=114  Identities=22%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCc-------HHhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEE-------LASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d-------~~~al~~aDi  164 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|++.  ++..+.++....... ..+++-..+       ..+.+...|+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~-~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPAACAI-ALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTTEEEE-ECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceEEE-EeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            5677889999999999999999998  999999986  333344442211000 001111111       1223568999


Q ss_pred             EEEcCCCCC-CCC--Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPR-KPG--MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~-k~g--~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||... .+-  .+.   ...+..|+    -+.+.+++.+.+....+.||+++
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~is  138 (256)
T d1k2wa_          83 LVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMA  138 (256)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             EEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCcccccc
Confidence            999999754 221  222   22344554    34455666655555556666654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0056  Score=55.07  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=63.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC-CCCceeeec---CCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN-TPSQVLDFT---GPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~-~~~~v~~i~---~t~d~~~al~~aDiVIiaa  169 (412)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++.+.  .++.+.. ......++.   ......+.+...|++|..+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~l--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~a   82 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHH--HHHHhccCCceeeeeccccccccccccccccceeEEecc
Confidence            4566779999999999999999998  999999986211  1111110 000000110   0112223567999999999


Q ss_pred             CCCCCCC---Cchhh---HHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          170 GVPRKPG---MTRDD---LFNIN----ANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       170 g~p~k~g---~~r~d---l~~~N----~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |.+....   .+..+   .+.-|    ..+.+.+.+.+.+. +.+-+++++
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~is  132 (245)
T d2ag5a1          83 GFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMS  132 (245)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             cccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeee
Confidence            8764321   22222   22333    34555566655554 455555554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.04  E-value=0.034  Score=50.14  Aligned_cols=114  Identities=17%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCc-------HHhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEE-------LASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d-------~~~al~  160 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  +.....++........+.    +++-..+       ..+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4677779999999999999999998  999999986  222233333221111111    1111111       122356


Q ss_pred             CCcEEEEcCCCCC--CCC--Cchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR--KPG--MTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~--k~g--~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||...  .+-  .+..+   .+..|+    .+.+.+.+.+.+.....|| +++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii-~is  142 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVV-NTA  142 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE-EEC
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCc-ccc
Confidence            8999999999632  221  23222   334443    3455555666555444444 443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0034  Score=54.35  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ...+||+|||| |..|...|..|+.+|+  +|.|+|.+.
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            44579999998 9999999999999999  999999975

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0098  Score=53.35  Aligned_cols=112  Identities=22%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc------eeeecCCCcHHhhcCCCcEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ------VLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~------v~~i~~t~d~~~al~~aDiV  165 (412)
                      +++.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++........      +..+.  ....+.+..-|++
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~--~~~~~~~g~iDil   81 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGF--AEALAHLGRLDGV   81 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHH--HHHHHHHSSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHH--HHHHHhcCCceEE
Confidence            5678889999999999999999998  999999986  2222222221100011      11110  1112345689999


Q ss_pred             EEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..||.....   ..+.   ...+..|+.    +.+.+.+.+.+. ..+++++.+
T Consensus        82 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~s  135 (242)
T d1ulsa_          82 VHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTA  135 (242)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred             EECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeec
Confidence            9999975422   1222   223445554    344444444433 345554443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.032  Score=46.68  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhc--------CCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASAL--------KGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al--------~~aD  163 (412)
                      ..+|.|+|+ |.+|...+..+...|. ..|+..|.++. ...+.++.   ... +.. ....+..+..        .++|
T Consensus        27 gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a~~-~~~-~~~~~~~~~~~~~~~~~g~g~D   99 (171)
T d1pl8a2          27 GHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---ADL-VLQ-ISKESPQEIARKVEGQLGCKPE   99 (171)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CSE-EEE-CSSCCHHHHHHHHHHHHTSCCS
T ss_pred             CCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---Ccc-ccc-ccccccccccccccccCCCCce
Confidence            458999998 9999999988888884 58999999872 22333331   111 111 1122222111        4799


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +||.+.|.+               ..+....+.   ..|.+.+++++.|.+
T Consensus       100 vvid~~G~~---------------~~~~~a~~~---~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2         100 VTIECTGAE---------------ASIQAGIYA---TRSGGTLVLVGLGSE  132 (171)
T ss_dssp             EEEECSCCH---------------HHHHHHHHH---SCTTCEEEECSCCCS
T ss_pred             EEEeccCCc---------------hhHHHHHHH---hcCCCEEEEEecCCC
Confidence            999997644               122222222   237888888876654

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0052  Score=54.80  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhh-cccCCC--CceeeecCCCcHHhhc--CCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADL-SHCNTP--SQVLDFTGPEELASAL--KGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL-~~~~~~--~~v~~i~~t~d~~~al--~~aDiVIi  167 (412)
                      .++|.|+||+|.+|..+|..++..|.  .|.++|+++........ .+....  .....+.  ....+.+  ...|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQVT--AEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHHH--HHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHHH--HHHHHHhCCCCceEEEE
Confidence            47899999999999999999999998  99999997621110000 111000  0000000  0111122  34799999


Q ss_pred             cCCCC-C-CCC-Cch----hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          168 PAGVP-R-KPG-MTR----DDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       168 aag~p-~-k~g-~~r----~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      .||.. . .+- ...    +..+..|+.-.-.+++.+.++. ..+.|++++
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~is  128 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAG  128 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEc
Confidence            98852 2 221 111    2234556655555555555555 567776664

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.98  E-value=0.019  Score=51.81  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKG  161 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~  161 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  +.....++.......  ...+++-..       ...+.+..
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35677889999999999999999998  999999986  333333443322110  000111101       11234568


Q ss_pred             CcEEEEcCCCCC--CCC--Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPR--KPG--MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~--k~g--~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .|++|..+|...  .+-  .+..   ..+..|+.    +.+.+.+.+.+. ..+.||+++
T Consensus        83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~is  141 (260)
T d1zema1          83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTA  141 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeee
Confidence            999999998643  221  2222   23344543    455555555543 456565554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.92  E-value=0.016  Score=52.56  Aligned_cols=115  Identities=14%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCCcH-------HhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPEEL-------ASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~d~-------~~al~~  161 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|++.   ++....++.......  ...+++-..+.       .+.+..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4566779999999999999999998  999999874   223333333221110  00011111111       123468


Q ss_pred             CcEEEEcCCCCCC-C--CCchhh---HHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          162 VNVVVIPAGVPRK-P--GMTRDD---LFNIN----ANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k-~--g~~r~d---l~~~N----~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      -|++|..||.... +  ..+..|   .+..|    ..+.+.+++.+.+......|++++
T Consensus        86 iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~is  144 (261)
T d1geea_          86 LDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMS  144 (261)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccc
Confidence            8999999987542 2  122222   34445    345666777776655555555554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.018  Score=48.23  Aligned_cols=132  Identities=17%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +..+|.|+|+ |.+|...+..+...|.  +++..|.++. ...+.++-   ....+ ............++.|+||.+.|
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---ad~~i-~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---ADEVV-NSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---CSEEE-ETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---CcEEE-ECchhhHHHHhcCCCceeeeeee
Confidence            3568999998 9999999888888897  7778888763 22333222   11111 11111122234578999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc---ccchHHHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT---TLDVVRAN  247 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt---~Lds~R~~  247 (412)
                      .+..                  +-..++-..|++.++.++-|.+....+..  ..-.  +...+++|..   .-|..++-
T Consensus       103 ~~~~------------------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~--~~l~--~k~~~i~Gs~~~~~~d~~e~l  160 (168)
T d1uufa2         103 APHN------------------LDDFTTLLKRDGTMTLVGAPATPHKSPEV--FNLI--MKRRAIAGSMIGGIPETQEML  160 (168)
T ss_dssp             SCCC------------------HHHHHTTEEEEEEEEECCCC-------CH--HHHH--TTTCEEEECCSCCHHHHHHHH
T ss_pred             cchh------------------HHHHHHHHhcCCEEEEeccCCCCcccccH--HHHH--HCCcEEEEEeecCHHHHHHHH
Confidence            5521                  11122233388888888766542221111  1111  3456788873   23444444


Q ss_pred             HHHHH
Q 015172          248 TFVAQ  252 (412)
Q Consensus       248 ~~la~  252 (412)
                      .++++
T Consensus       161 ~l~a~  165 (168)
T d1uufa2         161 DFCAE  165 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            45444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.90  E-value=0.021  Score=44.92  Aligned_cols=69  Identities=12%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||.|||+ |.+|..-+..|...|-  .|.+++........ .+.+..   .+......-+. +.+.++|+|+.+.
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~-~~~~~~---~i~~~~~~~~~-~dl~~~~lv~~at   80 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFT-VWANEG---MLTLVEGPFDE-TLLDSCWLAIAAT   80 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHH-HHHTTT---SCEEEESSCCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHH-HHHhcC---CceeeccCCCH-HHhCCCcEEeecC
Confidence            469999999 9999999999999997  89999986532221 222211   12111112223 3689999999984

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.89  E-value=0.013  Score=52.79  Aligned_cols=113  Identities=23%  Similarity=0.282  Sum_probs=65.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCCCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKGVN  163 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~aD  163 (412)
                      .+.|+||++.+|..+|..|+..|.  .|++.|+++  +...+.++.......  ...+++-..       ...+.+..-|
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD   89 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVD   89 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCce
Confidence            344559999999999999999998  999999986  333344444322110  001111111       1123457999


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG---MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..+|......   .+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++
T Consensus        90 ilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnis  145 (251)
T d2c07a1          90 ILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINIS  145 (251)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             eeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEEC
Confidence            9999988754322   222   22233443    44555666666543 45555554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.89  E-value=0.0052  Score=54.61  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+||+|.+|..+|..++..|.  .|++.|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4899999999999999999999998  999999975

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.88  E-value=0.013  Score=52.61  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=65.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCC-------cHHhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPE-------ELASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~-------d~~~al~~aDi  164 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++....... ..+++-..       ...+.+...|+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAARYV-HLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEEEE-ECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcceEE-EeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            4566779999999999999999998  999999987  333344443221000 00111111       11234568999


Q ss_pred             EEEcCCCCC-CC--CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPR-KP--GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~-k~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||... .+  ..+..   +.+..|+.    +.+.+.+.+.+. +.+.||+++
T Consensus        84 linnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~is  138 (244)
T d1nffa_          84 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINIS  138 (244)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             EEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecc
Confidence            999998743 22  22222   23444543    444555555544 355555554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.014  Score=48.23  Aligned_cols=100  Identities=13%  Similarity=0.051  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCC-CcH----HhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP-EEL----ASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t-~d~----~~al~~aDiV  165 (412)
                      ..+|.|+|. |.+|..++..|...|.  +++++|.++  ......++.....    ..+.|. +|.    +..+.+||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~~----~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDNA----DVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTTC----EEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCCc----EEEEccCcchHHHHHhccccCCEE
Confidence            357999998 9999999999999998  999999886  2223333332221    111111 111    2357899999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN  214 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~  214 (412)
                      |.+.+.         |  ..|+.+    +..+++.+|+..+++- .+|.+
T Consensus        76 i~~~~~---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDN---------D--ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEcccc---------H--HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            998421         1  334433    3445566788644444 45554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.83  E-value=0.0093  Score=54.44  Aligned_cols=114  Identities=15%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-Ccee----eecCCCcH-------Hhhc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVL----DFTGPEEL-------ASAL  159 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~----~i~~t~d~-------~~al  159 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.....+ ..+.    +++-..+.       .+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5677789999999999999999998  999999986  33334444332211 1111    11111111       1234


Q ss_pred             CCCcEEEEcCCCCCCCC-----Cchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPG-----MTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g-----~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..-|++|..+|.....+     ++..+   .+..|+.    +.+.+.+.+.+ ...+++++.+
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            57899999998643222     12222   2334443    45555555554 3456665553

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.01  Score=54.81  Aligned_cols=115  Identities=13%  Similarity=0.022  Sum_probs=66.6

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhccc---CCCCceeeecCC-Cc---HHhhc--C
Q 015172           94 FKV-AVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHC---NTPSQVLDFTGP-EE---LASAL--K  160 (412)
Q Consensus        94 ~KV-~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~---~~~~~v~~i~~t-~d---~~~al--~  160 (412)
                      +|| -|+||+|++|++++..|..+|.  +|+-+|+...   .+....+...   .....+..+.+. +|   ..+.+  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            589 5999999999999999999999  9999998641   1111111111   111122222211 12   22223  3


Q ss_pred             CCcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhC-CC-eEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNC-PD-AFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~-p~-aiviv~T  210 (412)
                      +.|+|+..++......  ....+.+..|+.-...+.+.++++. .+ ..++.+|
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S  132 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  132 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence            5567777765442111  2334556678888888888888876 33 4455444

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.81  E-value=0.0081  Score=54.24  Aligned_cols=103  Identities=21%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             eEE-EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCCC
Q 015172           95 KVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKGV  162 (412)
Q Consensus        95 KV~-VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~a  162 (412)
                      ||+ |.||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.......  ...+++-..       ...+.+..-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            664 569999999999999999998  999999986  333344444322110  000111111       112345689


Q ss_pred             cEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHh
Q 015172          163 NVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       163 DiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~  199 (412)
                      |++|..||......   .+.   .+.+..|+.-.-.+++.+-+
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p  123 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLK  123 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhH
Confidence            99999999764221   222   23455665555555555443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.79  E-value=0.1  Score=46.17  Aligned_cols=156  Identities=17%  Similarity=0.119  Sum_probs=88.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCc-------HHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEE-------LASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d-------~~~al~~aD  163 (412)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|++.  ++....++....... ..+++-..+       ..+.+..-|
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEAEAIAV-VADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCSSEEEE-ECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCceEEE-EecCCCHHHHHHHHHHHHHHhCCcc
Confidence            35677889999999999999999998  999999987  333333332211000 001111111       223456899


Q ss_pred             EEEEcCCCCC-CC--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172          164 VVVIPAGVPR-KP--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF  236 (412)
Q Consensus       164 iVIiaag~p~-k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi  236 (412)
                      ++|..+|.+. .+  ..+.   .+.+.-|+.-...+.+....+. ...++++.|.......|-  ...+           
T Consensus        82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~--~~~Y-----------  148 (241)
T d2a4ka1          82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG--LAHY-----------  148 (241)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH--HHHH-----------
T ss_pred             EeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC--cccc-----------
Confidence            9999887643 22  1222   3345677777777777777666 445555555544422221  1111           


Q ss_pred             eccccchHHHHHHHHHHcCCCCCCeeeeEE
Q 015172          237 GVTTLDVVRANTFVAQKKNLKLIDVDVPVV  266 (412)
Q Consensus       237 Glt~Lds~R~~~~la~~l~v~~~~V~~~Vi  266 (412)
                      +.+-.-...|-+.+|+.++  ++.|++-+|
T Consensus       149 ~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         149 AAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             HHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             chhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence            1211112356677888885  445555444

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.78  E-value=0.013  Score=47.70  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH  123 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~  123 (412)
                      |||+|.|++|.||+.++..+...++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            7999999889999999988888776  554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.74  E-value=0.0088  Score=50.12  Aligned_cols=98  Identities=16%  Similarity=0.032  Sum_probs=59.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHH---hh-----cCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELA---SA-----LKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~---~a-----l~~aD  163 (412)
                      ..+|.|+|+ |.||...+..+...|.  +|+.+|.++ ....+.++...   ..........+..   +.     =.++|
T Consensus        27 g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga~---~~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          27 GTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGAD---VTLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCS---EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCCc---EEEeccccccccchhhhhhhcccccCCc
Confidence            458999997 9999999998888896  899999987 23333333211   0010000011111   11     15799


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +||.++|.+               ..+.+.   ++-..|++.+++++.|..
T Consensus       101 ~vid~~g~~---------------~~~~~a---~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         101 VTIDCSGNE---------------KCITIG---INITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             EEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCSS
T ss_pred             eeeecCCCh---------------HHHHHH---HHHHhcCCceEEEecCCC
Confidence            999997644               112222   222338999988877654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.74  E-value=0.018  Score=52.38  Aligned_cols=114  Identities=17%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-Ccee----eecCCCc-------HHhhc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVL----DFTGPEE-------LASAL  159 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~----~i~~t~d-------~~~al  159 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++...... ..+.    +++-..+       ..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4567779999999999999999998  999999986  33333444333211 1111    1111111       12234


Q ss_pred             CCCcEEEEcCCCCCCC--C-----Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKP--G-----MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~--g-----~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ...|++|..||.....  .     ++.   ...+..|+.    +.+.+.+.+.+. ...+|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            6899999999875421  1     111   112334543    445555555543 466666554

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.74  E-value=0.003  Score=58.25  Aligned_cols=104  Identities=13%  Similarity=-0.053  Sum_probs=57.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhccc---CCCCceeeecC-CCcH---Hhhc--CC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHC---NTPSQVLDFTG-PEEL---ASAL--KG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~---~~~~~v~~i~~-t~d~---~~al--~~  161 (412)
                      +|+-|+||+|++|++++..|+.+|.  +|+.+|....   ......+...   .....+..+.+ .+++   .+.+  .+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            5788899999999999999999999  9999998531   1111111110   00111111111 1222   2223  46


Q ss_pred             CcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHh
Q 015172          162 VNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVAD  199 (412)
Q Consensus       162 aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~  199 (412)
                      .|+||.+|+......  .+..+....|......+...+.+
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~  119 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS  119 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhh
Confidence            799999987653221  12233445555555555555543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.017  Score=49.03  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +.++|.|+|+ |.++.++++.|...+-  +|++++++.  ++..+..+....   ......  .+ ...+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~~--~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQQ--NIVLANRTFSKTKELAERFQPYG---NIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccCc--eeeeccchHHHHHHHHHHHhhcc---ccchhh--hc-cccccccceeeecc
Confidence            3578999998 9999999999987654  999999986  333444443221   122111  11 12478999999995


Q ss_pred             CC
Q 015172          170 GV  171 (412)
Q Consensus       170 g~  171 (412)
                      ..
T Consensus        88 p~   89 (171)
T d1p77a1          88 SA   89 (171)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.70  E-value=0.021  Score=52.98  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecC--CC---cHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTG--PE---ELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~--t~---d~~~al~~aDiVI  166 (412)
                      +.++|.|+||+|++|+.++..|+..|.  +|+.+-.+........+....   .+..+.+  ++   -+..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            356899999999999999999999998  888886654211111221110   0111111  11   1445789999988


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      ......          ...|...-+.++....+..
T Consensus        77 ~~~~~~----------~~~~~~~~~~~~~aa~~ag  101 (350)
T d1xgka_          77 INTTSQ----------AGDEIAIGKDLADAAKRAG  101 (350)
T ss_dssp             ECCCST----------TSCHHHHHHHHHHHHHHHS
T ss_pred             eecccc----------cchhhhhhhHHHHHHHHhC
Confidence            864221          1223444455666666555

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.025  Score=43.10  Aligned_cols=69  Identities=19%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKVAVLGAAGGIGQ-PLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV~VIGAaG~vG~-~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |||.+||- |.+|. ++|..|..+|.  .|.-.|..... ....|.....    ..+.+ .+. +.++++|+||.+.++|
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~Gi----~i~~g-h~~-~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLGI----PIFVP-HSA-DNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTTC----CEESS-CCT-TSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCCC----eEEee-ecc-cccCCCCEEEEecCcC
Confidence            79999998 88887 67889999999  99999987522 2223555442    22223 333 3689999999998777

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.047  Score=48.85  Aligned_cols=113  Identities=20%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce----eeecCCCcH-------HhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV----LDFTGPEEL-------ASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v----~~i~~t~d~-------~~al~  160 (412)
                      +.+.|+||++.+|..+|..++..|.  .|++.|++.  +.....++........+    .+++-..+.       .+.+-
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4567779999999999999999998  999999986  23333334332111111    111111111       12346


Q ss_pred             CCcEEEEcCCCCCCCCCchhhHHHhhH----HHHHHHHHHHHhhC--CCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPGMTRDDLFNINA----NIVKTLVEAVADNC--PDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~~r~dl~~~N~----~i~~~i~~~i~~~~--p~aiviv~T  210 (412)
                      ..|++|..||.....  +..+.+..|+    ...+...+.+.+..  ..+.|++++
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~is  135 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS  135 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeec
Confidence            899999999876432  2333344444    45566666665543  246666664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.04  Score=49.50  Aligned_cols=114  Identities=21%  Similarity=0.314  Sum_probs=66.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCc-------HHhhcCCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEE-------LASALKGV  162 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d-------~~~al~~a  162 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.......  ...+++-..+       ..+.+..-
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4677779999999999999999998  999999986  333333443322110  0001111111       12335789


Q ss_pred             cEEEEcCCCCCC-C-CCchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          163 NVVVIPAGVPRK-P-GMTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       163 DiVIiaag~p~k-~-g~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |++|..||.... + .++..+   .+..|+    .+.+.+.+.+.+.. .+.+|+++
T Consensus        90 DilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          90 DILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             CEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            999999987542 2 233322   234443    35556666666554 44444443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0081  Score=54.79  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||.|+||+|++|++++..|+.+|.  ++++.|....    .|+.+.   ..+..+     +.  ..+.|+|+.+++..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~---~~~~~~-----~~--~~~~d~v~~~a~~~   65 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS---RAVHDF-----FA--SERIDQVYLAAAKV   65 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH---HHHHHH-----HH--HHCCSEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCH---HHHHHH-----Hh--hcCCCEEEEcchhc
Confidence            36999999999999999999999997  7777765421    112111   001111     11  24578999987543


Q ss_pred             CCC---CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          173 RKP---GMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       173 ~k~---g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                      ...   .....+.+..|+..-..++..+.++.-.-+|
T Consensus        66 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i  102 (315)
T d1e6ua_          66 GGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLL  102 (315)
T ss_dssp             CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            211   1234556678999989999999887644343

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.64  E-value=0.0054  Score=53.43  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+||+|||| |.+|...|+.|+.+|.  +|.|+|.+.
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999998 9999999999999999  999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.63  E-value=0.012  Score=47.14  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|+|||| |.+|.-+|..++..|.  +|++++..+
T Consensus        30 ~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          30 VNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            468999998 9999999999999998  999999875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.013  Score=52.63  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCC-------CcHHhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP-------EELASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t-------~d~~~al~~aDi  164 (412)
                      +.+.|+||++.+|..+|..++..|.  .|++.|+++  ++..+.++....... ..+++-.       ....+.+..-|+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANGKGL-MLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEEEE-ECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCCcEE-EEEecCHHHhhhhhhhhhcccCCcce
Confidence            3456669999999999999999998  999999987  333333332111000 0011110       112234568999


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKPG---MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||......   .+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is  136 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIG  136 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeec
Confidence            999998754322   122   22344454    45555666655543 46565554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0094  Score=51.06  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhcccCCCCce--eeecCCCcHHhhcCCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHCNTPSQV--LDFTGPEELASALKGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~~~~~~v--~~i~~t~d~~~al~~aDi  164 (412)
                      +.++|.|||+ |.+|.++++.|...|. .++++++++..     ...+.++... .....  ..+....++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            3479999998 9999999999999884 69999999751     2222233222 11111  122112334556789999


Q ss_pred             EEEcCCC
Q 015172          165 VVIPAGV  171 (412)
Q Consensus       165 VIiaag~  171 (412)
                      ||.+...
T Consensus        94 iIN~Tp~  100 (182)
T d1vi2a1          94 LTNGTKV  100 (182)
T ss_dssp             EEECSST
T ss_pred             eccccCC
Confidence            9998543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.60  E-value=0.032  Score=50.29  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCc-------HHhhcC-
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEE-------LASALK-  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d-------~~~al~-  160 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  +...+.++.......  ...+++-..+       ..+.+. 
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            35677889999999999999999998  999999986  333333343322110  0001111111       112333 


Q ss_pred             CCcEEEEcCCCCC-CC--CCchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR-KP--GMTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~-k~--g~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .-|++|..+|... .+  ..+..|   .+..|+.    +.+.+.+.+++.. .+.||+++
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  144 (259)
T d1xq1a_          86 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS  144 (259)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred             CcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccc
Confidence            4799999998743 22  223222   3444443    4455555555544 34444443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.02  Score=51.39  Aligned_cols=113  Identities=22%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCc------eeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQ------VLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~------v~~i~~t~d~~~al~~aDiV  165 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++ ....+.++.....+..      +....  ....+.+..-|++
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~--~~~~~~~G~iDiL   80 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFV--EEAAYALGRVDVL   80 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHH--HHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHH--HHHHHhcCCCCeE
Confidence            35678889999999999999999998  999999986 2222222211111111      11111  1223346789999


Q ss_pred             EEcCCCCC-CCC--Cchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          166 VIPAGVPR-KPG--MTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       166 Iiaag~p~-k~g--~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      |..||... .+-  .+..|   .+..|+    .+.+.+.+.+.+. ..+.||+++
T Consensus        81 VnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~is  134 (248)
T d2d1ya1          81 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVA  134 (248)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             EEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccc
Confidence            99998743 221  22222   344454    3455555555543 356665654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.58  E-value=0.017  Score=52.26  Aligned_cols=114  Identities=24%  Similarity=0.199  Sum_probs=66.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCC-------CcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP-------EELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t-------~d~~~al~~aD  163 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  +.....++....... ..+++-.       ....+.+...|
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDAARYQ-HLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGGEEEE-ECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceEEE-EcccCCHHHHHHHHHHHHHHcCCcc
Confidence            35788999999999999999999998  999999986  333333332211000 0011100       11223456899


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.... +  ..+.   .+.+..|+    -+.+.+.+.+.+.. .+.||+++
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~is  137 (254)
T d1hdca_          82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNIS  137 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccc
Confidence            99999987532 2  1222   22344454    35555566655543 45555554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.57  E-value=0.052  Score=48.68  Aligned_cols=116  Identities=16%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc-CCCC--ceeeecCCC-------cHHhhcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC-NTPS--QVLDFTGPE-------ELASALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~-~~~~--~v~~i~~t~-------d~~~al~  160 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  ....+.++... ....  ...+++-..       ...+.+.
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35677789999999999999999998  999999986  22223333221 1000  000111111       1223456


Q ss_pred             CCcEEEEcCCCCC-CCC--Cchhh---HHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPR-KPG--MTRDD---LFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~-k~g--~~r~d---l~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .-|++|..+|... ++-  .+..+   .+..|+    .+.+.+.+.+.+....+.+++.+
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~  146 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS  146 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence            8999999998753 221  22222   334443    35566677766666666665543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.013  Score=52.83  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCC-------CcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP-------EELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t-------~d~~~al~~aD  163 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++.+...  ...+++-.       .+..+.+..-|
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~--~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVF--ILCDVTQEDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEE--EECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeE--EEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            35688889999999999999999998  999999986  2222333322110  00011110       11223456899


Q ss_pred             EEEEcCCCCCCCC----Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG----MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g----~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||....++    .+..   ..+..|+    .+.+.+.+.+++.  .+.+|+++
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~is  137 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINIS  137 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccc
Confidence            9999998643222    2222   2234443    4556666666654  35555554

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.024  Score=50.56  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCce--eeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQV--LDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v--~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      |.|+||+|++|+.++..|+.+|. .+|+.+|.-. .... ..+.+.......  ..+.........+.++|+|+..|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKF-VNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGG-HHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchh-hcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999984 3789998432 1111 111111100000  00000000012457889999988766


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172          173 RKPGMTRDDLFNINANIVKTLVEAVADNCPD  203 (412)
Q Consensus       173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~  203 (412)
                      ..+..........|......+........-.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6555555555666677777777777766543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.53  E-value=0.035  Score=49.67  Aligned_cols=114  Identities=20%  Similarity=0.283  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC--ceeeecCCCcH-------HhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS--QVLDFTGPEEL-------ASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~--~v~~i~~t~d~-------~~al~~aDi  164 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++.+.....+.......  ...+++-..+.       .+.+-..|+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4566779999999999999999998  999999986321111122211110  00111111111       223568999


Q ss_pred             EEEcCCCCCC-C--CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRK-P--GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k-~--g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||.... +  ..+..   ..+..|+    -+.+.+.+.+.+.. .+.||+++
T Consensus        84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~is  138 (247)
T d2ew8a1          84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  138 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccc
Confidence            9999987532 2  12222   2344453    45556666666554 45555554

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.52  E-value=0.049  Score=48.76  Aligned_cols=79  Identities=13%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCcee--eecCC-------CcHHhhcC
Q 015172           93 SFKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVL--DFTGP-------EELASALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~--~i~~t-------~d~~~al~  160 (412)
                      .+++.|+||+|  .+|..+|..|+..|.  +|++.|+++ ....+.++..........  +++..       .+..+.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            46788899877  699999999999999  999999987 333333333322111110  11110       12234567


Q ss_pred             CCcEEEEcCCCCC
Q 015172          161 GVNVVVIPAGVPR  173 (412)
Q Consensus       161 ~aDiVIiaag~p~  173 (412)
                      ..|++|..+|...
T Consensus        83 ~id~lV~nag~~~   95 (274)
T d2pd4a1          83 SLDFIVHSVAFAP   95 (274)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CCCeEEeeccccc
Confidence            8999999988653

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.0054  Score=52.72  Aligned_cols=80  Identities=19%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      .-..++|+|||-+..||.++|.+|+.+|-  .|.+.|++..    ......+.+.... .+..++ .+++++..+.+|+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHVE-DLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEEE-EEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeeccc-cccccc-hhHHhhccccCCEE
Confidence            34568999999977889999999999987  8999988641    1111222222111 122221 13366778899999


Q ss_pred             EEcCCCCC
Q 015172          166 VIPAGVPR  173 (412)
Q Consensus       166 Iiaag~p~  173 (412)
                      |.++|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.45  E-value=0.036  Score=42.63  Aligned_cols=72  Identities=18%  Similarity=0.330  Sum_probs=50.8

Q ss_pred             CCCceEEEEcCCCCcH-HHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           91 QASFKVAVLGAAGGIG-QPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG-~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ...+||.+||- |.+| +++|..|..+|+  +|.-.|.... ....+|.+..    ...+.+ .+. +.++++|+||...
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G----i~v~~g-~~~-~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG----AKIYIG-HAE-EHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT----CEEEES-CCG-GGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC----CeEEEC-Ccc-ccCCCCCEEEECC
Confidence            45689999998 8888 566999999999  9999998752 1223444432    122222 233 3589999999998


Q ss_pred             CCC
Q 015172          170 GVP  172 (412)
Q Consensus       170 g~p  172 (412)
                      ++|
T Consensus        76 AI~   78 (96)
T d1p3da1          76 AIK   78 (96)
T ss_dssp             TSC
T ss_pred             CcC
Confidence            877

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.44  E-value=0.053  Score=48.74  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcC-
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALK-  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~-  160 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++.......  ...+++-..       ...+.+. 
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            35677889999999999999999998  999999986  333333443322110  000111111       1112344 


Q ss_pred             CCcEEEEcCCCCCCCC---Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..||......   .+..   ..+..|+.    +.+...+.+.+. ..+.||+++
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~is  144 (259)
T d2ae2a_          86 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFIS  144 (259)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEEC
T ss_pred             CceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccc
Confidence            4899999999754222   2222   23445543    344455555443 345555554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.0063  Score=54.55  Aligned_cols=111  Identities=21%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-----GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      +.+++.|+||++.+|..+|..|+..|.  .|++.|+++..     .+..|+.+..   .+..+.  ....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEE
Confidence            346788889999999999999999998  99999998621     1122222211   111111  12234567899999


Q ss_pred             EcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          167 IPAGVPRK-P--GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       167 iaag~p~k-~--g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..||.... +  ..+..   ..+..|+.    +.+.+.+.+.+.. .+.||+++
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~is  131 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIG  131 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEc
Confidence            99987532 1  12222   23444443    4455566655543 45555554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.41  E-value=0.005  Score=55.14  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++||+|||| |..|.+.|+.|+..|+  +|+|+|-++
T Consensus        29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4579999998 9999999999999999  999999765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.39  E-value=0.015  Score=52.47  Aligned_cols=111  Identities=20%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC--CCce------eeecCCCcHHhhcCCCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT--PSQV------LDFTGPEELASALKGVN  163 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~--~~~v------~~i~~t~d~~~al~~aD  163 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.....  ...+      ..+.  ....+.+..-|
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~--~~~~~~~g~iD   82 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVM--AAVQRRLGTLN   82 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHH--HHHHHHHCSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHH--HHHHHHhCCCC
Confidence            4566679999999999999999998  999999986  3333334432110  1111      1110  11223456899


Q ss_pred             EEEEcCCCCCC-C--CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRK-P--GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k-~--g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||.... +  ..+..   ..+..|+    -+.+.+.+.+++  ..+.||+++
T Consensus        83 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~is  137 (253)
T d1hxha_          83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMA  137 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEEC
T ss_pred             eEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceeccc
Confidence            99999997542 1  12222   2334443    345555665543  246666665

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.36  E-value=0.0024  Score=56.12  Aligned_cols=61  Identities=26%  Similarity=0.311  Sum_probs=45.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .++|+|||. |.+|..+|..+..-|.  +|..||.....+.         ..... +   .++++.++.||+|++..
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~-~---~~l~~l~~~~D~v~~~~  105 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD---------HPDFD-Y---VSLEDLFKQSDVIDLHV  105 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC---------CTTCE-E---CCHHHHHHHCSEEEECC
T ss_pred             ceeeeeeec-ccccccccccccccce--eeeccCCccchhh---------hcchh-H---HHHHHHHHhcccceeee
Confidence            479999998 9999999999988898  9999998532111         01111 1   35677889999999984

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.17  E-value=0.14  Score=46.26  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCC-ce-eeecCC-------CcHHhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPS-QV-LDFTGP-------EELASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~-~v-~~i~~t-------~d~~~al~~  161 (412)
                      +.+.|+||+|.+|..+|..|+..|.  .|++.|++.  ....+.++.... ... .+ .+++-.       ....+.+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            5677779999999999999999998  999999987  233334443221 000 00 011100       112234578


Q ss_pred             CcEEEEcCCCCC
Q 015172          162 VNVVVIPAGVPR  173 (412)
Q Consensus       162 aDiVIiaag~p~  173 (412)
                      .|++|..+|...
T Consensus       104 iDilvnnAg~~~  115 (294)
T d1w6ua_         104 PNIVINNAAGNF  115 (294)
T ss_dssp             CSEEEECCCCCC
T ss_pred             cchhhhhhhhcc
Confidence            999999998654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.032  Score=46.47  Aligned_cols=65  Identities=14%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +||+|||+ |.+|.. ....+...+-+.-+.++|.+..  ...+.++   ..    . +  .+++++.+++.|+|+++.
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---~~----~-~--~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---RI----P-Y--ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---TC----C-B--CSSHHHHHTTCSEEEECS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---cc----c-c--cccchhhhhhcccccccc
Confidence            79999998 999975 4555555543334568888763  2222211   11    1 1  245666678999999983

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.16  E-value=0.0059  Score=53.40  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |||+|||| |..|...|+.|++.|+  +|+|+|..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            78999998 9999999999999999  999999865

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.10  E-value=0.055  Score=48.63  Aligned_cols=115  Identities=14%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce--eeecCCCc-------HHhhc-C
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV--LDFTGPEE-------LASAL-K  160 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v--~~i~~t~d-------~~~al-~  160 (412)
                      .+++.|+||++.+|..+|..++..|.  .|++.|+++  +.....++.........  .+++-..+       ..+-+ .
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46788999999999999999999998  999999987  22333333332211100  11111111       12223 2


Q ss_pred             CCcEEEEcCCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .-|++|..+|......   .+..   ..+..|+    .+.+.+.+.+.+.. .+.+++++
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~is  142 (258)
T d1ae1a_          84 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLS  142 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEEC
T ss_pred             CcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccc
Confidence            4789999888754221   1222   2233333    34555556665544 44454444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.10  E-value=0.17  Score=45.36  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCC-------CcHHhhcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGP-------EELASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t-------~d~~~al~~  161 (412)
                      +++.|.||++.+|..+|..|+..|.  +|++.|.+.   ++..+.++.......  ...+++-.       ....+.+..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            5677779999999999999999998  999999875   222222232221110  00011000       112234578


Q ss_pred             CcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKPG---MT---RDDLFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      -|++|..+|......   .+   ..+.+..|+.-.-.+.+.+.++. .++.+++++
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            899999988654321   22   22334556655555666666555 455444443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.07  E-value=0.026  Score=50.93  Aligned_cols=113  Identities=17%  Similarity=0.262  Sum_probs=63.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-Ccee----eecCCCcH-------HhhcC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVL----DFTGPEEL-------ASALK  160 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~----~i~~t~d~-------~~al~  160 (412)
                      .+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++...... ..+.    +++-..+.       .+.+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            445559999999999999999998  999999986  33344444433211 1111    11111111       12346


Q ss_pred             CCcEEEEcCCCCCC-----CC--Cchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRK-----PG--MTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k-----~g--~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ..|++|..+|....     +.  ++..   ..+..|+.    +.+.+.+.+++. ..++|++.|
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            89999999986421     11  1222   23344543    455566665543 456665554

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.06  E-value=0.034  Score=46.26  Aligned_cols=70  Identities=23%  Similarity=0.454  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      .||+||||+|++|.-+...|..+++ ..++.++.-+...|..  +.... +. ..... ..  ++.+.++|+++.+.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~~-~~-~~~~~-~~--~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFKD-QD-ITIEE-TT--ETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEETT-EE-EEEEE-CC--TTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--ccccC-Cc-ccccc-cc--hhhhhhhhhhhhccC
Confidence            4899999999999999998888863 4577777654322221  11111 11 11111 12  236789999999853

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.06  E-value=0.064  Score=48.08  Aligned_cols=114  Identities=16%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhccc-CCCC--ceeeecCCCcH-------HhhcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHC-NTPS--QVLDFTGPEEL-------ASALK  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~-~~~~--~v~~i~~t~d~-------~~al~  160 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++   ++....++... ....  ...+++-..+.       .+.+-
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4556669999999999999999998  999999975   22222223221 1000  00011111111       23346


Q ss_pred             CCcEEEEcCCCCCCCC---Cchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          161 GVNVVVIPAGVPRKPG---MTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g---~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .-|++|..||......   .+..   +.+..|+    ...+.+.+.+.+.. .+.||+++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  141 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIA  141 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecc
Confidence            7999999999754221   2222   2344443    45556666666543 45555553

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.05  Score=50.07  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC---CCCcee----eecCCCc-------HH
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN---TPSQVL----DFTGPEE-------LA  156 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~---~~~~v~----~i~~t~d-------~~  156 (412)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|++.  ++..+.+|....   ....+.    +++-..+       ..
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            45677889999999999999999998  999999986  333444443211   111111    1111111       11


Q ss_pred             hhcCCCcEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172          157 SALKGVNVVVIPAGVPRKPG---MTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g---~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +.+..-|++|..||......   .+.   ...+..|+.    +.+.+++.+.+.. .+.+++++
T Consensus        90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~s  152 (297)
T d1yxma1          90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNII  152 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEEC
T ss_pred             HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-cccccccc
Confidence            23568999999988753221   122   223445543    4455555554443 44444444

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0065  Score=56.53  Aligned_cols=106  Identities=25%  Similarity=0.383  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh----CCCC-----CeEEEEecCch--hhhhhhhcccCCC-CceeeecCCCcHHhhcC-
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM----SPLV-----SALHLYDVMNV--KGVAADLSHCNTP-SQVLDFTGPEELASALK-  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~----~gl~-----~ev~L~Di~~~--~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~-  160 (412)
                      .||.|.|| |..|.+++..+..    .|+.     ..+.++|.+-+  ++...++.....+ ..........+++++++ 
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~  104 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI  104 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence            58999998 9999999987653    3442     36999999752  2211112111100 00111111245777665 


Q ss_pred             -CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          161 -GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       161 -~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                       +.|++|-+.|.+.   .           +-+++++.+.+++++.||+-.|||..
T Consensus       105 ~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         105 LKPSTIIGVAGAGR---L-----------FTPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HCCSEEEECCCSSC---C-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cCCceEEEecCCCC---c-----------CCHHHHHHHHhcCCCcEEEEccCCCC
Confidence             8888888766542   1           12556667778899999999999965

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.071  Score=49.12  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----------hhhhhhhhcccCCCCceeeecCCCcH-------
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----------VKGVAADLSHCNTPSQVLDFTGPEEL-------  155 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----------~~g~~~dL~~~~~~~~v~~i~~t~d~-------  155 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|++.           ++....++....... ..++....+.       
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKA-VANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEE-EEECCCGGGHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccccc-ccccchHHHHHHHHHHH
Confidence            3466669999999999999999998  999999864           111112222111110 1111111111       


Q ss_pred             HhhcCCCcEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          156 ASALKGVNVVVIPAGVPRKPG---MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       156 ~~al~~aDiVIiaag~p~k~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      .+.+..-|++|..||..+...   ++.   ...+..|+    .+.+.+.+.+.+.. .+.||+++
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~is  148 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  148 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeC
Confidence            134568999999999764221   222   22344554    45566666666554 45555554

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.023  Score=50.65  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|+.++..|+..|+ ++++|+|-|.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            58999998 9999999999999995 7999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.96  E-value=0.0092  Score=51.95  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +||+|||| |.-|...|+.|+..|+  +|+++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            68999998 9999999999999999  999999765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.83  E-value=0.012  Score=51.80  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|||| |..|...|..|+..|+  +|+++|.+.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            479999999 9999999999999999  999999753

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.76  E-value=0.0035  Score=51.83  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=34.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      |++||+ |.||.+++..|...+.  .+.+++++..+.  .+|.+..... .      .+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~~~~--~~l~~~~~~~-~------~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSIDRA--RNLAEVYGGK-A------ATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSHHHH--HHHHHHTCCC-C------CSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCChhhh--cchhhccccc-c------cchhhhhccCcEEEEec
Confidence            689998 9999999987755443  345788765322  2233321110 1      12345789999999995

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.73  E-value=0.039  Score=50.14  Aligned_cols=113  Identities=20%  Similarity=0.240  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCC-------cHHhhcCCCcE
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPE-------ELASALKGVNV  164 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~-------d~~~al~~aDi  164 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  +.....++....... ..+++...       ...+.+...|+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGDNVLGI-VGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGEEEE-ECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCeeEE-ecccccHHHHHHHHHHHHHHhCCccc
Confidence            5688889999999999999999998  999999986  222222332211000 00111001       11234678999


Q ss_pred             EEEcCCCCCCCC-------Cch----hhHHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          165 VVIPAGVPRKPG-------MTR----DDLFNIN----ANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       165 VIiaag~p~k~g-------~~r----~dl~~~N----~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +|..||......       +..    ...+.-|    ..+.+.+.+.+.+. ...+|++.|
T Consensus        83 lvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~g~iI~i~S  142 (276)
T d1bdba_          83 LIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS-RGNVIFTIS  142 (276)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             ccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc-CCCceeeee
Confidence            999998642211       111    1223334    34556666666554 355665554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.71  E-value=0.055  Score=45.73  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhc------CCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASAL------KGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~aDi  164 (412)
                      +..+|.|+|+ |.+|...+..+...|. ..|+..|.++. ...+.++-.   ...+. .. ..++.+.+      +++|+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa---~~~i~-~~-~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA---TDILN-YK-NGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC---SEEEC-GG-GSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc---ccccc-cc-chhHHHHHHHHhhccCcce
Confidence            3568999998 9999998888887774 47999999873 333333321   11011 11 11222211      56999


Q ss_pred             EEEcCCCC
Q 015172          165 VVIPAGVP  172 (412)
Q Consensus       165 VIiaag~p  172 (412)
                      ||+++|.+
T Consensus       100 vid~~g~~  107 (174)
T d1jqba2         100 VIMAGGGS  107 (174)
T ss_dssp             EEECSSCT
T ss_pred             EEEccCCH
Confidence            99998755

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.093  Score=47.18  Aligned_cols=117  Identities=16%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             CceEEEE-cCCCCcHHHHHHHHHhC-CCCCeEEEEecCc--hhhhhhhhcccCCCCce--eeecCC-------CcHHhhc
Q 015172           93 SFKVAVL-GAAGGIGQPLALLIKMS-PLVSALHLYDVMN--VKGVAADLSHCNTPSQV--LDFTGP-------EELASAL  159 (412)
Q Consensus        93 ~~KV~VI-GAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v--~~i~~t-------~d~~~al  159 (412)
                      .++|+|| ||++.+|..+|..|+.. |.  .|++.|++.  ++..+.+|.........  -+++-.       ....+.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            3678755 99999999999998875 76  999999987  33334444432211100  011100       1122335


Q ss_pred             CCCcEEEEcCCCCC-CCCC--chhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172          160 KGVNVVVIPAGVPR-KPGM--TRDD---LFNINANIVKTLVEAVADNC-PDAFIHIISN  211 (412)
Q Consensus       160 ~~aDiVIiaag~p~-k~g~--~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~TN  211 (412)
                      ..-|++|..||+.. .+..  +..+   .+.-|+--...+++.+-.+. +.+.+++++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            68999999999743 2222  2222   34456555555666665555 4677766653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.1  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||++.+|..+|..|+..|.  .|++.|+++
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~   48 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   48 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35788889999999999999999998  999999986

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.47  E-value=0.016  Score=53.88  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+||+|||| |..|.++|+.|+.+|.  +|.|+|-+.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            579999998 9999999999999998  999999987

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.43  E-value=0.014  Score=49.09  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+||+|||| |..|...|..|+..|+ ++|.++|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            479999998 9999999999999997 3699999876

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.43  E-value=0.041  Score=46.24  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=45.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+||.|||+ |.++.++++.|...|. .+|.+++++..++.  .|.+.. .  ...+   .++  ...++|+||.+....
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~--~L~~~~-~--~~~~---~~~--~~~~~DliINaTpiG   84 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQ--YLAALY-G--YAYI---NSL--ENQQADILVNVTSIG   84 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHH--HHHHHH-T--CEEE---SCC--TTCCCSEEEECSSTT
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHH--HHHHhh-h--hhhh---hcc--cccchhhheeccccC
Confidence            468999998 9999999999999985 68999998763222  122110 0  1111   112  246899999985433

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.42  E-value=0.038  Score=49.19  Aligned_cols=116  Identities=19%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHhCCCC-----CeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCC-------CcHH
Q 015172           94 FKV-AVLGAAGGIGQPLALLIKMSPLV-----SALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGP-------EELA  156 (412)
Q Consensus        94 ~KV-~VIGAaG~vG~~iA~~l~~~gl~-----~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t-------~d~~  156 (412)
                      ++| .|+||++.+|..+|..|+..|.-     ..|+++|++.  ++....++.......  ...+++-.       ....
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            365 46799999999999999998851     1389999986  333334443322110  00011111       1122


Q ss_pred             hhcCCCcEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          157 SALKGVNVVVIPAGVPRKPG---MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       157 ~al~~aDiVIiaag~p~k~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      +.+...|++|..||......   .+.   ...+..|+    -+.+.+.+.+.+. ..+.+++++
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~is  143 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFIT  143 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEe
Confidence            34568999999998754221   122   22344454    4556666666654 355565654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.14  Score=45.57  Aligned_cols=43  Identities=23%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHHh---CCCCCeEEEEecCc--hhhhhhhhc
Q 015172           94 FKVAVL-GAAGGIGQPLALLIKM---SPLVSALHLYDVMN--VKGVAADLS  138 (412)
Q Consensus        94 ~KV~VI-GAaG~vG~~iA~~l~~---~gl~~ev~L~Di~~--~~g~~~dL~  138 (412)
                      .||+|| ||++.+|..+|..|+.   .|.  .|++.|+++  +...+.++.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHH
Confidence            477777 9989999999999985   577  999999986  333344443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.34  E-value=0.18  Score=42.47  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=60.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCC-cHH-----hhcCCCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPE-ELA-----SALKGVN  163 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~-d~~-----~al~~aD  163 (412)
                      ++..+|.|+|+ |.+|...+..+...|. ..|+..|.++ ....+.++-...   .+. ..... ..+     -.=.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~---~i~-~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATD---CLN-PRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSE---EEC-GGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCc---ccC-CccchhhhhhhHhhhhcCCCc
Confidence            44568999998 9999999998888884 5899999987 333344432211   000 00000 011     0126899


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC-eEEEEEcCCCC
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD-AFIHIISNPVN  214 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-aiviv~TNPv~  214 (412)
                      +||++.|.+               ..+.   ..++-..|. +.++++..|.+
T Consensus       101 ~vie~~G~~---------------~~~~---~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2         101 YSLDCAGTA---------------QTLK---AAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             EEEESSCCH---------------HHHH---HHHHTBCTTTCEEEECCCSSS
T ss_pred             EEEEecccc---------------hHHH---HHHHHhhcCCeEEEecCCCCC
Confidence            999998755               1222   223323464 78888877754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.019  Score=50.40  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++..||+|||| |.-|.+.|+.|+..|+  +|.+++-+.
T Consensus         3 ~~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            34568999998 9999999999999999  999998765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.053  Score=45.52  Aligned_cols=70  Identities=14%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +.++|.|+|| |..+.++++.|...|.  +|.+++++..  +..+..+.+..   .+..+. -.+.  ...++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~~---~~~~~~-~~~~--~~~~~dliIN~T   87 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTG---SIQALS-MDEL--EGHEFDLIINAT   87 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGGS---SEEECC-SGGG--TTCCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhcc---cccccc-cccc--cccccceeeccc
Confidence            3478999998 9999999999999997  7999998763  22232232221   122221 1222  357899999984


Q ss_pred             C
Q 015172          170 G  170 (412)
Q Consensus       170 g  170 (412)
                      .
T Consensus        88 p   88 (170)
T d1nyta1          88 S   88 (170)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.12  E-value=0.22  Score=44.33  Aligned_cols=114  Identities=20%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-chhhhhhhhcccCCCCcee----eecC--------CCcHHhhc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-NVKGVAADLSHCNTPSQVL----DFTG--------PEELASAL  159 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-~~~g~~~dL~~~~~~~~v~----~i~~--------t~d~~~al  159 (412)
                      .+.|.|+||++.+|..+|..++..|.  .|++.+.+ +......++........+.    +++.        -....+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            35688889999999999999999997  77666544 3211112222111110000    1110        01112235


Q ss_pred             CCCcEEEEcCCCCCCCCCchhhHHHhhH----HHHHHHHHHHHhh--CCCeEEEEEc
Q 015172          160 KGVNVVVIPAGVPRKPGMTRDDLFNINA----NIVKTLVEAVADN--CPDAFIHIIS  210 (412)
Q Consensus       160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~----~i~~~i~~~i~~~--~p~aiviv~T  210 (412)
                      ...|++|..||.....  +-+..+..|+    ...+.+.+.+.+.  .+.+.||+++
T Consensus        83 g~iDilvnnAG~~~~~--~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          83 KTVDILINGAGILDDH--QIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             SCCCEEEECCCCCCTT--CHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             CCCCEEEeCCCCCCHH--HHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            7899999999865322  2233344554    4667777777553  2567776664

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.12  E-value=0.04  Score=46.95  Aligned_cols=78  Identities=18%  Similarity=0.155  Sum_probs=46.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-h-hhhh----hhcccCCCC----ceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-K-GVAA----DLSHCNTPS----QVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~-g~~~----dL~~~~~~~----~v~~i~~t~d~~~al~~a  162 (412)
                      .+||+|.|- |.+|..++..+..++-+.-|.+-|+.+. . .+..    ++.+.....    .-..+....++.+.+.++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            479999998 9999999988887764444556666541 1 1111    111111110    001122234566677899


Q ss_pred             cEEEEcCCC
Q 015172          163 NVVVIPAGV  171 (412)
Q Consensus       163 DiVIiaag~  171 (412)
                      |+||++.|.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999999763

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.076  Score=45.19  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=42.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||.+..||.+++.+|+.+|-  .|.++|...                       .++.+-+++||+||.++|.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t-----------------------~~l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKT-----------------------AHLDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTC-----------------------SSHHHHHTTCSEEEECCCC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEeccc-----------------------ccHHHHHhhccchhhcccc
Confidence            457999999988899999999999987  788776532                       2233456778888888776


Q ss_pred             C
Q 015172          172 P  172 (412)
Q Consensus       172 p  172 (412)
                      |
T Consensus        93 ~   93 (170)
T d1a4ia1          93 P   93 (170)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.047  Score=46.40  Aligned_cols=57  Identities=14%  Similarity=0.401  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ..++|+|||-+..+|..++.+|...|.  .|...+..                       |.++.+-+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            457999999988899999999998887  67666532                       23445567899999999887


Q ss_pred             CC
Q 015172          172 PR  173 (412)
Q Consensus       172 p~  173 (412)
                      |.
T Consensus        91 p~   92 (166)
T d1b0aa1          91 PG   92 (166)
T ss_dssp             TT
T ss_pred             cc
Confidence            63

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.01  E-value=0.039  Score=46.42  Aligned_cols=64  Identities=19%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      .+||+|+|. |.||..++..+...+-+.-+.++|.+...         .......   ...++.+.+.+.|+|+++.
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~---~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVF---DVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEE---EGGGGGGTTTTCSEEEECS
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------ccccccc---cchhhhhhccccceEEEeC
Confidence            478999998 99999988877776433334466665311         0011121   1345666778999999984

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.01  E-value=0.061  Score=47.75  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCC--cHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGG--IGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~--vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|.|+||+|.  +|..+|..++..|.  +|+|.|.++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            357888897554  99999999999998  999999886

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=94.01  E-value=0.074  Score=50.16  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=49.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ...++|||+ |..+...+..+. ..+ +.+|++||++.  ....+.++... ..  +. +....+.++++++||+|+.+.
T Consensus       128 a~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~-~g--~~-v~~~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY-SG--LT-IRRASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC-TT--CE-EEECSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhc-cC--CC-ceecCCHHHHHhcCCceeecc
Confidence            468999998 999887776554 456 57999999986  34455555432 11  22 223467889999999999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.094  Score=44.10  Aligned_cols=74  Identities=14%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHH---hh------cCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA---SA------LKG  161 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~---~a------l~~  161 (412)
                      +..+|.|+|| |.+|...+..+...|. ..|+..|.++. ...+.++-   ....+ .. ..++..   +.      =.+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG---a~~vi-~~-~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG---ADLTL-NR-RETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT---CSEEE-ET-TTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc---ceEEE-ec-cccchHHHHHHHHHhhCCCC
Confidence            3568999998 9999999988888884 47999999873 33334332   11111 11 111211   11      146


Q ss_pred             CcEEEEcCCCC
Q 015172          162 VNVVVIPAGVP  172 (412)
Q Consensus       162 aDiVIiaag~p  172 (412)
                      +|+||.++|.+
T Consensus       101 ~Dvvid~vG~~  111 (182)
T d1vj0a2         101 ADFILEATGDS  111 (182)
T ss_dssp             EEEEEECSSCT
T ss_pred             ceEEeecCCch
Confidence            89999998765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.027  Score=47.73  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      +.++|.|||+ |.++.++++.|...+   +|.+++++.  ++..+.++...........+. -.+++..+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-FSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE-EECTTCCCTTCCEEEECS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhh-hhhhhhccchhhhhccCC
Confidence            3478999998 999999998885444   899999976  333344444322111111111 134455678999999986


Q ss_pred             CCCC
Q 015172          170 GVPR  173 (412)
Q Consensus       170 g~p~  173 (412)
                      ..+.
T Consensus        92 p~g~   95 (177)
T d1nvta1          92 PIGM   95 (177)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            5443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.068  Score=45.19  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .++|+|+|- |.+|.++|..+...|.  .|..+|+++.++... ..+.   ..+      ...++++..+|+||.+.|.+
T Consensus        24 Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG---~~v------~~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          24 GKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEG---YEV------TTMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT---CEE------CCHHHHTTTCSEEEECSSCS
T ss_pred             CCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCc---eEe------eehhhhhhhccEEEecCCCc
Confidence            468999998 9999999999999998  999999998432211 1111   111      13457899999999986643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.96  E-value=0.018  Score=51.11  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .|.|||| |.+|..+|+.|+.+|.  .|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999998 9999999999999998  999999865

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.91  E-value=0.076  Score=44.10  Aligned_cols=65  Identities=25%  Similarity=0.278  Sum_probs=39.5

Q ss_pred             ceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa  169 (412)
                      +||+|||+ |.+|.. ....+...+- -+++++|.++.  ...+.++..   +   ..   .+|+++.+ .+.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~---~---~~---~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV---S---AT---CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC---C---CC---CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc---c---cc---cccHHHhcccccceecccc
Confidence            79999998 999976 4555555432 28899998862  222222211   1   11   23555444 3789999983

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.83  E-value=0.16  Score=44.92  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             ceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCC-Cce-eeecCCC-------cHHhhcCC
Q 015172           94 FKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTP-SQV-LDFTGPE-------ELASALKG  161 (412)
Q Consensus        94 ~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~-~~v-~~i~~t~-------d~~~al~~  161 (412)
                      +++.|+||+|  .+|..+|..|+..|.  .|++.|.++ ....+.++...... ..+ .+++-..       ...+.+..
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            5688889866  699999999999998  899999986 22233222221111 000 0111111       11234567


Q ss_pred             CcEEEEcCCCCCCC-------CCchhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172          162 VNVVVIPAGVPRKP-------GMTRDD---LFNINANIVKTLVEAVADNC-PDAFIHIIS  210 (412)
Q Consensus       162 aDiVIiaag~p~k~-------g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~T  210 (412)
                      -|++|..+|.....       ..+..|   .+.-|+.-...+++....+. ..+.+++++
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            99999998864311       122222   23445544555555555444 356666654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.18  Score=44.36  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCC---------CcHHhhcC
Q 015172           93 SFKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGP---------EELASALK  160 (412)
Q Consensus        93 ~~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t---------~d~~~al~  160 (412)
                      .++|.|+||+|  .+|..+|..|+..|.  +|++.|.++ ....+.++..............+         .+..+.+.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            36788889867  588999999999998  999999986 33333333322111000000000         11223346


Q ss_pred             CCcEEEEcCCCCCCCCC-------chhh----HHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC
Q 015172          161 GVNVVVIPAGVPRKPGM-------TRDD----LFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG  228 (412)
Q Consensus       161 ~aDiVIiaag~p~k~g~-------~r~d----l~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s  228 (412)
                      ..|++|..++.......       ...+    .+.-|......+.+.+..+. +...++++|.....          .  
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~----------~--  150 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------R--  150 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT----------S--
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc----------c--
Confidence            67899988765432211       1111    22344445555556655555 45566665543210          0  


Q ss_pred             CCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc
Q 015172          229 VYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG  267 (412)
Q Consensus       229 g~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG  267 (412)
                      +.|..-..+.+---...+-+.+|+.++  ++.|++-+|-
T Consensus       151 ~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         151 AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence            011111111110112346677888885  6677776663

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.69  E-value=0.029  Score=51.79  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++||+|||| |..|...|..|+..+...+|++++.+.
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            3578999998 999999999888887666999999986

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.69  E-value=0.12  Score=45.74  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hh--------hhhhhcccCCCCceeeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KG--------VAADLSHCNTPSQVLDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g--------~~~dL~~~~~~~~v~~i~~t~d~~~al~~a  162 (412)
                      ..||.+.|| |..|.+++..+...+. .++.++|.+-+  +.        +..++.+...+.   .  ...++.+.++++
T Consensus        26 d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~---~--~~~~l~~~l~g~   98 (222)
T d1vl6a1          26 EVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---R--LSGDLETALEGA   98 (222)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---C--CCSCHHHHHTTC
T ss_pred             hcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcch---h--hhcchHhhccCc
Confidence            468999998 9999999999888774 79999999741  11        111111111111   1  124577899999


Q ss_pred             cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcH
Q 015172          163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTV  217 (412)
Q Consensus       163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~  217 (412)
                      |+++-+..    +|.-     .+         +.+++.+++.||+-.|||..-.-
T Consensus        99 ~~~~g~~~----~~~~-----~~---------e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          99 DFFIGVSR----GNIL-----KP---------EWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             SEEEECSC----SSCS-----CH---------HHHTTSCSSCEEEECCSSSCSSC
T ss_pred             ceeccccc----cccc-----cH---------HHHhhcCCCCEEEecCCCccchh
Confidence            98777642    2221     11         24566788999989999976433

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.64  E-value=0.095  Score=44.14  Aligned_cols=69  Identities=16%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE-EEecCchhhhhhhhccc-CCCCceeeecCCCcHHhhc--CCCcEEEEcC
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH-LYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELASAL--KGVNVVVIPA  169 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~-L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al--~~aDiVIiaa  169 (412)
                      +||+|||+ |.+|...+..+...+-+ +|+ ++|.+.....  ++... ..+.....   .+|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKI---HGSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEE---ESSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceee---cCcHHHhhhccccceeeecc
Confidence            69999998 99999998888766433 555 7788762211  11111 11111222   25677655  5789999983

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.63  E-value=0.031  Score=48.91  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++||+|||| |..|..+|..|+..|+ ..|.++|...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            479999999 9999999999999995 3889999865

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.58  E-value=0.041  Score=43.89  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|+|||| |.+|.-+|..+...|.  +|.|++..+
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            368999999 9999999999999998  999999976

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.52  E-value=0.039  Score=43.74  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++||+|||| |.+|.-+|..+...|.  +|+|++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            378999999 9999999999999898  999999864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.065  Score=52.07  Aligned_cols=35  Identities=34%  Similarity=0.570  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||.|||+ |.+|..++..|+..|+ ++|+|+|-+.
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            358999998 9999999999999995 6999999975

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.51  E-value=0.87  Score=36.81  Aligned_cols=112  Identities=10%  Similarity=0.008  Sum_probs=68.5

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAA---GGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAa---G~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.|+||||+   +..|..++..|...|+  +|+++....  .   ++.         .+....++++.-...|+|++.. 
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~--~---~i~---------G~~~~~sl~dlp~~iD~v~i~v-   82 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY--E---EVL---------GRKCYPSVLDIPDKIEVVDLFV-   82 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--S---EET---------TEECBSSGGGCSSCCSEEEECS-
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc--c---ccC---------CCcccccccccCccceEEEEEe-
Confidence            579999986   5789999999999998  888886532  0   111         1111233443224689988883 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cc-cchHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TT-LDVVR  245 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~-Lds~R  245 (412)
                                     +.+.+.++++++.+....++++.   |... -+-+.+.+++.+ +   +++|= |. .+..|
T Consensus        83 ---------------p~~~~~~~~~e~~~~g~k~v~~~---~G~~-~ee~~~~a~~~g-i---~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 ---------------KPKLTMEYVEQAIKKGAKVVWFQ---YNTY-NREASKKADEAG-L---IIVANRCMMREHER  136 (139)
T ss_dssp             ---------------CHHHHHHHHHHHHHHTCSEEEEC---TTCC-CHHHHHHHHHTT-C---EEEESCCHHHHHHH
T ss_pred             ---------------CHHHHHHHHHHHHHhCCCEEEEe---cccc-CHHHHHHHHHCC-C---EEEcCCcChhhhhh
Confidence                           25566677777777777666543   3321 124456666653 3   67886 74 34333

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.50  E-value=0.043  Score=43.09  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++||+|||| |.+|.-+|..+...|.  +|.|++..+
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            378999999 9999999999999998  999999875

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.47  E-value=0.019  Score=53.64  Aligned_cols=105  Identities=18%  Similarity=0.289  Sum_probs=62.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh----CCCC-----CeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCC--
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM----SPLV-----SALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKG--  161 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~----~gl~-----~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~--  161 (412)
                      .||.|.|| |..|.+++.+++.    .|+-     ..++++|.+-+ ...-.|+.+...+. ........++.+.++.  
T Consensus        26 ~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~-a~~~~~~~~l~~~i~~~k  103 (308)
T d1o0sa1          26 EKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQF-AKDMPETTSILEVIRAAR  103 (308)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTT-CBSSCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHH-HHhcccCCcHHHHHhccc
Confidence            58999998 9999999977653    3542     25999998751 11112333222111 0111122344444442  


Q ss_pred             CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .+++|-+.+.+   |.     +  +    +++++.+.+++++.||+-.|||..
T Consensus       104 ptvliG~s~~~---g~-----f--t----~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         104 PGALIGASTVR---GA-----F--N----EEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             CSEEEECSSCT---TC-----S--C----HHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cccEEeccccc---CC-----C--C----HHHHHHHHhhCCCcEEEEccCCCC
Confidence            35666665544   21     1  1    445567777899999999999975

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.46  E-value=0.09  Score=44.05  Aligned_cols=98  Identities=22%  Similarity=0.302  Sum_probs=57.5

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhc-----CCCc
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASAL-----KGVN  163 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al-----~~aD  163 (412)
                      +++..+|.|+|+ |.+|...+..+...|. ..|...|.++. ...+.++--   ...+ .. ...|+.+.+     .+.|
T Consensus        26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga---~~~i-~~-~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA---THVI-NS-KTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC---SEEE-ET-TTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC---eEEE-eC-CCcCHHHHHHHHcCCCCc
Confidence            344678999998 9999999988888775 36778888762 233333321   1111 11 122333222     2589


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172          164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP  212 (412)
Q Consensus       164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP  212 (412)
                      +||++.|.+               ..+++..+.   ..|++.+++++.|
T Consensus        99 ~vid~~G~~---------------~~~~~~~~~---~~~~G~i~~~G~~  129 (174)
T d1f8fa2          99 FALESTGSP---------------EILKQGVDA---LGILGKIAVVGAP  129 (174)
T ss_dssp             EEEECSCCH---------------HHHHHHHHT---EEEEEEEEECCCC
T ss_pred             EEEEcCCcH---------------HHHHHHHhc---ccCceEEEEEeec
Confidence            999997643               222222222   2388888877643

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=93.46  E-value=0.019  Score=53.44  Aligned_cols=103  Identities=20%  Similarity=0.237  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh----CCCC-----CeEEEEecCch-hhhhhhhcccCCC--CceeeecCCCcHHhhcC-
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM----SPLV-----SALHLYDVMNV-KGVAADLSHCNTP--SQVLDFTGPEELASALK-  160 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~----~gl~-----~ev~L~Di~~~-~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~-  160 (412)
                      .||.|.|| |..|.+++.+++.    .|+-     ..+.|+|.+-+ ...-.|+.+...+  ....   ...++.+.++ 
T Consensus        26 ~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~---~~~~l~~~i~~  101 (298)
T d1gq2a1          26 HTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHC---EMKNLEDIVKD  101 (298)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCC---CCCCHHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhh---hhhhhHHHhhc
Confidence            58999998 9999999987753    2432     37999999751 1111233322111  1111   1123443343 


Q ss_pred             -CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          161 -GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       161 -~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                       ..+++|-+.+.+   |.           +-+++++.+..++++.||+-.|||..
T Consensus       102 vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         102 IKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             HCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCC
Confidence             366777776554   21           12445566778899999999999975

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.45  E-value=0.12  Score=46.06  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCC------ceeeecCCCcHHhhcCCCcEEEEc
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPS------QVLDFTGPEELASALKGVNVVVIP  168 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~------~v~~i~~t~d~~~al~~aDiVIia  168 (412)
                      +.|.||++.+|..+|..|+..|.  .|++.|++.. ..+...+.......      .+..+.  ....+.+-.-|++|..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~--~~~~~~~G~iDiLVnN   78 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELI--EAVTSAYGQVDVLVSN   78 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHH--HHHHHHHSCCCEEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHH--HHHHHHcCCCCEEEEC
Confidence            56889999999999999999998  9999998751 11111111111111      111110  1122345689999998


Q ss_pred             CCCCC--CCC--Cchhh---HHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172          169 AGVPR--KPG--MTRDD---LFNIN----ANIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       169 ag~p~--k~g--~~r~d---l~~~N----~~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ||...  +|-  .+..|   .+..|    ..+.+.+.+.+.+... +.||+++
T Consensus        79 Ag~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~is  130 (252)
T d1zmta1          79 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFIT  130 (252)
T ss_dssp             CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeeccc
Confidence            87532  332  23222   22333    3456677777766544 4444444

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.37  E-value=0.3  Score=39.65  Aligned_cols=23  Identities=30%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCC
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSP  117 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~g  117 (412)
                      ||+|+|++|.||+.++..+...+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~   23 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD   23 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC
Confidence            89999988999999988776654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.33  E-value=0.11  Score=46.41  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=59.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCC-------CcHHhhc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGP-------EELASAL  159 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t-------~d~~~al  159 (412)
                      ..+.|.|+||++.+|..+|..|+..|.  +|++.+...   .+.....+.......  ...+++..       ....+.+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            345677889999999999999999998  898865543   222233333221110  00011100       1122345


Q ss_pred             CCCcEEEEcCCCCC-CCC--Cch---hhHHHhhHHHHHHHHHHHHhhC
Q 015172          160 KGVNVVVIPAGVPR-KPG--MTR---DDLFNINANIVKTLVEAVADNC  201 (412)
Q Consensus       160 ~~aDiVIiaag~p~-k~g--~~r---~dl~~~N~~i~~~i~~~i~~~~  201 (412)
                      -.-|++|..+|... .+-  .+.   ...+..|+.-.-.+.+.+.++.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m  130 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHC  130 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHE
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhh
Confidence            68999999998743 221  122   2234455544444444444444

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.32  E-value=0.088  Score=46.84  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCC-------cHHhhcCCCc
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPE-------ELASALKGVN  163 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~-------d~~~al~~aD  163 (412)
                      |.|+||++.+|..+|..|+..|.  .|++.|.+.   .+....++.......  ...+++-..       ...+.+..-|
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            44559999999999999999998  999988754   222222222211000  000111111       1123356899


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172          164 VVVIPAGVPRKPG---MTR---DDLFNINA----NIVKTLVEAVADNCPDAFIHIIS  210 (412)
Q Consensus       164 iVIiaag~p~k~g---~~r---~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T  210 (412)
                      ++|..||......   .+.   ...+..|+    -..+.+.+.+.+. ..+.||+++
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnis  137 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIA  137 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEc
Confidence            9999998754221   222   22334443    4556666666554 456665554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.026  Score=42.00  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++|+|||+ |..|.-++......|+  +++.+|.+.
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            468999998 9999999988888899  999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.22  E-value=0.0052  Score=53.33  Aligned_cols=33  Identities=33%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCC----CCeEEEEec
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPL----VSALHLYDV  127 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl----~~ev~L~Di  127 (412)
                      |||+|||| |-+|.++|+.|+.+|.    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999998 9999999999998875    235555554

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.047  Score=42.95  Aligned_cols=33  Identities=36%  Similarity=0.504  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +||.|||+ |.+|.-+|..+...|.  +|.+++..+
T Consensus        22 ~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            68999998 9999999999999998  999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.95  E-value=0.052  Score=43.85  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+||+|||| |.+|.-+|..+...|.  +|.+++..+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            368999998 9999999999999998  999999975

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.94  E-value=0.032  Score=46.86  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ||+|||| |..|.+.|+.|+..|+ .+|+++|.++
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            7999998 9999999999999995 3699999865

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.92  E-value=0.034  Score=47.69  Aligned_cols=78  Identities=18%  Similarity=0.139  Sum_probs=44.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhh-h--hh-cccCCCC----ceeeecCCCcHHhhcCCCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVA-A--DL-SHCNTPS----QVLDFTGPEELASALKGVN  163 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~-~--dL-~~~~~~~----~v~~i~~t~d~~~al~~aD  163 (412)
                      |.||+|.|- |.+|..++..+..++-+.-|.+-|..+. .... .  +. .+.....    .-..+....+..+.+.++|
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence            569999998 9999999999888764433444555441 1111 1  00 0111000    0011122345666778999


Q ss_pred             EEEEcCCC
Q 015172          164 VVVIPAGV  171 (412)
Q Consensus       164 iVIiaag~  171 (412)
                      +||++.|.
T Consensus        80 iViecTG~   87 (178)
T d1b7go1          80 IVVDTTPN   87 (178)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            99999663

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.88  E-value=0.028  Score=50.36  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||+|||| |..|..+|..|+..|+  +|.++|...
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            37999999 9999999999999999  999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.058  Score=42.88  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|++|||| |.+|.-+|..+...|.  +|.+++..+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            369999999 9999999999999998  999999865

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.21  Score=45.19  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           94 FKVAVL-GAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        94 ~KV~VI-GAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      +||++| ||++.+|..+|..|+..|.  .++++++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~   34 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYA   34 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEE
Confidence            588766 9999999999999999986  6666654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.71  E-value=0.044  Score=46.56  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |||+|||| |.+|..+|..|...+.-.+|.+++.+.
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999988764444999998754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.69  E-value=0.33  Score=41.48  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=59.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhh------cCCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASA------LKGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~a------l~~aDi  164 (412)
                      +...|.|+|| |.+|...+..+...|. ..|+..|.++. ...+.++-   ... + ......++.+.      =.++|+
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~G---a~~-~-~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG---FEI-A-DLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CEE-E-ETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhcc---ccE-E-EeCCCcCHHHHHHHHhCCCCcEE
Confidence            3458999998 9999888877777773 58999999872 22333221   111 1 00111222221      257999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172          165 VVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN  211 (412)
Q Consensus       165 VIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN  211 (412)
                      +|.+.|.+........-...-..+.+.+..+.   ..|.+.++++.-
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~---~r~gG~v~~~G~  141 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQV---TRVAGKIGIPGL  141 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHH---EEEEEEEEECSC
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHHH---HhcCCEEEEeee
Confidence            99999865422111000000112233333332   238888877754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.14  Score=42.56  Aligned_cols=99  Identities=16%  Similarity=0.115  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPA  169 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaa  169 (412)
                      +..+|.|+|+ |.+|...+..+...|.  +++.+|.++. ...+.++-   ....+. .....+. +......|+||.+.
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~~~i~-~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---ADHYIA-TLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CSEEEE-GGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---CcEEee-ccchHHHHHhhhcccceEEEEe
Confidence            3568999998 9999998888778897  8999999872 33333332   111111 1111122 23346789999987


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      +.+.....+                ..++-..|++.+++++-|.
T Consensus       100 ~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2         100 SSLTDIDFN----------------IMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             SCSTTCCTT----------------TGGGGEEEEEEEEECCCCC
T ss_pred             cCCccchHH----------------HHHHHhhccceEEEecccc
Confidence            654321110                1122233888888886443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.37  E-value=0.53  Score=39.29  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=58.6

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHH---h--hcCCCcE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELA---S--ALKGVNV  164 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~---~--al~~aDi  164 (412)
                      ++...|.|+|+ |.+|...+..+...|. .+|+.+|.++ ....+.++--..   .++........+   +  .=.++|+
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EECccccchHHHHHHHHhccccceE
Confidence            34457999998 9999999998888884 5899999987 233333332210   011000011111   1  2268999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172          165 VVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV  213 (412)
Q Consensus       165 VIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv  213 (412)
                      ||++.|.+               ...   ...+.... +.+.++++..|.
T Consensus       103 vi~~~g~~---------------~~~---~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         103 TFEVIGHL---------------ETM---IDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             EEECSCCH---------------HHH---HHHHTTSCTTTCEEEECSCCC
T ss_pred             EEEeCCch---------------HHH---HHHHHHhhcCCeEEEEEEccc
Confidence            99997644               111   22223333 458888887664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.18  E-value=0.063  Score=42.04  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.|+.|||| |.+|.-+|..+...|.  +|.|++..+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            368999999 9999999999999998  999999865

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.17  E-value=0.071  Score=46.57  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ...+||.|||| |..|...|..|+..|+  ++.|+|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            44679999998 9999999999999999  999999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.16  E-value=0.46  Score=39.61  Aligned_cols=38  Identities=21%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++..+|.|+|+ |.+|...+..+...|. .+|+..|+++
T Consensus        25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~   62 (174)
T d1p0fa2          25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHK   62 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCG
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChH
Confidence            344568999998 9999999988888884 5899999987

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.08  Score=41.72  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..||+|||+ |..|..++......|+  +++.+|.++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            358999998 9999999998888899  999999875

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.91  E-value=0.11  Score=48.23  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ...++|||+ |..+...+..+.. .+ +.+|++||++.  .+..+.++.+....  ..     .+.++++++||+||.+-
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~-i~~i~v~~r~~e~~~~~~~~~~~~~~~--~~-----~~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFD-IGEVKAYDVREKAAKKFVSYCEDRGIS--AS-----VQPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHHHTTCC--EE-----ECCHHHHTSSSEEEECC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhh-hhhcccccCCHHHHHHHHHHHHhcCCc--cc-----cchhhhhccccEEEEec
Confidence            468999998 9998888766654 45 68999999986  34444445443211  11     12346799999998873

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.90  E-value=0.06  Score=43.80  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+||.|||| |.+|..+|..|...+.--+|+|+|.++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            369999999 999999999998776433899999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.85  E-value=0.089  Score=43.43  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +..+|.|+|+ |.+|...+..+...|.  +|+.+|.++
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchh
Confidence            3568999998 9999999988888896  999999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.75  E-value=0.055  Score=48.68  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +|.|||| |.+|..+|+.|+.+|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999998 9999999999999985 2699999864

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.74  E-value=0.083  Score=44.21  Aligned_cols=71  Identities=11%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI  166 (412)
                      ..||+++|-...|..+++..+...|.  ++.+.-...  ..    ....+..+. .....   .-+.|..++++++|+|.
T Consensus         4 gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~d~~ea~~~adviy   77 (163)
T d1pvva2           4 GVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAE-SGGSF---ELLHDPVKAVKDADVIY   77 (163)
T ss_dssp             TCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHH-HTCEE---EEESCHHHHTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhc-ccceE---EEecCHHHHhhhccEEe
Confidence            47999999866666777777777788  899987653  11    111111111 11112   22467888999999988


Q ss_pred             EcC
Q 015172          167 IPA  169 (412)
Q Consensus       167 iaa  169 (412)
                      ...
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.66  E-value=0.41  Score=39.59  Aligned_cols=74  Identities=23%  Similarity=0.233  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc------CCCcE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL------KGVNV  164 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~aDi  164 (412)
                      ++..+|.|.||+|.+|...+..+...|.  +++..+.++.+.  ..+....... +-.. ...|+.+.+      ++.|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~~--~~l~~~Ga~~-vi~~-~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKR--EMLSRLGVEY-VGDS-RSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHH--HHHHTTCCSE-EEET-TCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccc--cceeeecccccc--cccccccccc-cccC-CccCHHHHHHHHhCCCCEEE
Confidence            3456899999889999999988888887  777777654211  1122222111 1111 223444433      67999


Q ss_pred             EEEcCC
Q 015172          165 VVIPAG  170 (412)
Q Consensus       165 VIiaag  170 (412)
                      |+.+.|
T Consensus        98 v~d~~g  103 (183)
T d1pqwa_          98 VLNSLA  103 (183)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999965

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.088  Score=41.85  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +||+|||+ |.+|.-+|..+...|.  +|.+++..+
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            68999999 9999999999999998  999999975

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.58  E-value=0.043  Score=47.26  Aligned_cols=36  Identities=14%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCC-----CeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLV-----SALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~-----~ev~L~Di~~  129 (412)
                      +.||+|||| |--|.+.|+.|+..|+.     -+|.+||..+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            479999998 99999999999887631     2799999876

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.54  E-value=0.17  Score=44.23  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=40.8

Q ss_pred             CCceEEEEcCCCCcHHH-HHHHHHhCCCCCeEE-EEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEE
Q 015172           92 ASFKVAVLGAAGGIGQP-LALLIKMSPLVSALH-LYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVV  165 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~-L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiV  165 (412)
                      +..||+|||+ |.+|.. ++..+...+-+ +|+ ++|++.  ++..+.++ ... ...+..   .+|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~-~i~-~~~~~~---~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEY-GVD-PRKIYD---YSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHT-TCC-GGGEEC---SSSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhh-ccc-cccccc---cCchhhhcccccceee
Confidence            4569999998 999974 44444443322 555 899986  22222222 111 111222   356766564  68999


Q ss_pred             EEcC
Q 015172          166 VIPA  169 (412)
Q Consensus       166 Iiaa  169 (412)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            9983

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.53  E-value=0.34  Score=39.31  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=29.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      .++|.|||| |.+|..-+..|+..|-  +|++++..
T Consensus        13 gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            478999999 9999999999999997  99999654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.40  E-value=0.096  Score=41.59  Aligned_cols=34  Identities=18%  Similarity=0.012  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.|++|||| |.+|.-+|..+...|.  +|.|++.++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            368999999 9999999999999998  999998764

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.37  E-value=0.15  Score=45.83  Aligned_cols=114  Identities=18%  Similarity=0.163  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV  171 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~  171 (412)
                      ...||+|||-   +  .....+...+.  ++.++|.++..+   |         .    .....++.+..||+||+|+  
T Consensus       121 ~g~kV~vIG~---~--P~v~~l~~~~~--~~~VlE~~p~~g---d---------~----p~~~~~~lLp~aD~viiTG--  175 (251)
T d2h1qa1         121 KGKKVGVVGH---F--PHLESLLEPIC--DLSILEWSPEEG---D---------Y----PLPASEFILPECDYVYITC--  175 (251)
T ss_dssp             TTSEEEEESC---C--TTHHHHHTTTS--EEEEEESSCCTT---C---------E----EGGGHHHHGGGCSEEEEET--
T ss_pred             CCCEEEEEec---c--hhHHHHHhcCC--cEEEEeCCCCCC---C---------C----CchHHHHhhhcCCEEEEEe--
Confidence            3579999986   2  44445666666  899999875211   1         1    1223456899999999995  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe-ccccchHHHHHHH
Q 015172          172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG-VTTLDVVRANTFV  250 (412)
Q Consensus       172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG-lt~Lds~R~~~~l  250 (412)
                                     ..++..-.+.+-++++++..++..-|+..++|.+   + +. |   -+.+| +-..|..++.+.+
T Consensus       176 ---------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l---f-~~-G---v~~lag~~v~d~~~~~~~i  232 (251)
T d2h1qa1         176 ---------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVL---F-EH-G---LQELSGFMVKDNARAFRIV  232 (251)
T ss_dssp             ---------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG---G-GT-T---CSEEEEEEESCHHHHHHHH
T ss_pred             ---------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH---H-hc-C---CceEeEEEEeCHHHHHHHH
Confidence                           4566666777777887664444555887777752   2 22 2   24444 4668888888877


Q ss_pred             HHH
Q 015172          251 AQK  253 (412)
Q Consensus       251 a~~  253 (412)
                      ++-
T Consensus       233 ~~G  235 (251)
T d2h1qa1         233 AGA  235 (251)
T ss_dssp             TTS
T ss_pred             HcC
Confidence            644

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.36  E-value=0.23  Score=43.51  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             EEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           97 AVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        97 ~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .|+||++.+|..+|..|+..|.  +|++.|.+.
T Consensus         5 lVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           5 VITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4669999999999999999998  999999885

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=91.35  E-value=0.22  Score=41.91  Aligned_cols=67  Identities=15%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      .+++.|+|= |.+|.++|..+...|.  .|..+++|+..+... ..|.   ..+      ...+++++.+|+||.+.|.+
T Consensus        23 Gk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG---f~v------~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          23 GKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG---FNV------VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT---CEE------CCHHHHTTTCSEEEECCSSS
T ss_pred             CCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC---Ccc------CchhHccccCcEEEEcCCCC
Confidence            478999998 9999999999999998  999999998432211 1111   112      23567999999999996643

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=91.32  E-value=0.061  Score=45.01  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCCcHHHHH-HHHHhCCCCCeEEE-EecCc
Q 015172           93 SFKVAVLGAAGGIGQPLA-LLIKMSPLVSALHL-YDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA-~~l~~~gl~~ev~L-~Di~~  129 (412)
                      ++||+|||+ |.+|.... ..+...+.. ||+. .|++.
T Consensus         4 kirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           4 KLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            479999997 99998754 444445543 6655 47764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.26  E-value=0.33  Score=40.18  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV  130 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~  130 (412)
                      +++...|.|+|+ |.+|...+..++..+- ..|+..|+++.
T Consensus        26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~   64 (176)
T d2jhfa2          26 VTQGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKD   64 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGG
T ss_pred             CCCCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHH
Confidence            445678999998 8899999988888773 48999999873

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.22  E-value=0.091  Score=41.53  Aligned_cols=33  Identities=21%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ++|+|||| |.+|.-+|..+...|.  +|+|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999999 9999999999999998  999999876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.11  E-value=0.077  Score=44.27  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      -|.|||| |.-|...|+.|+..|.  .|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            4899998 9999999999999998  999999976

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.03  E-value=0.074  Score=47.14  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      -|.|||| |.+|.++|+.|+.+|+  .|+|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999998  999999753

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.98  E-value=0.14  Score=39.94  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++|+|+|+ |.+|.-+|..+...+.  ++.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            479999998 9999999999999987  999999865

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.97  E-value=0.093  Score=44.53  Aligned_cols=78  Identities=15%  Similarity=0.126  Sum_probs=44.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhh--hhhcc-cCCCCce-----eeecCCCcHHhhcCCC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVA--ADLSH-CNTPSQV-----LDFTGPEELASALKGV  162 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~--~dL~~-~~~~~~v-----~~i~~t~d~~~al~~a  162 (412)
                      |.||+|-|- |.+|..+...+..++-+.-+.+-|+.+..  .+.  .+..+ ...+...     ..+....+..+.+.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            579999998 99999999888877643333445554311  111  11111 0111000     0122223455677899


Q ss_pred             cEEEEcCCC
Q 015172          163 NVVVIPAGV  171 (412)
Q Consensus       163 DiVIiaag~  171 (412)
                      |+||++.|.
T Consensus        80 DvViEcTG~   88 (171)
T d1cf2o1          80 DIVIDCTPE   88 (171)
T ss_dssp             SEEEECCST
T ss_pred             CEEEEccCC
Confidence            999999663

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.80  E-value=0.067  Score=48.81  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |.+|.|||| |..|.++|+.|+..|.  +|.++|.+.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            468999998 9999999999999998  999999976

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.77  E-value=0.8  Score=37.65  Aligned_cols=115  Identities=21%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhh-----cCCCcEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASA-----LKGVNVVV  166 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~a-----l~~aDiVI  166 (412)
                      ...|.|+|+ |.+|...+..+...|. ..++..|.++. ...+.++.   ....+ . ...++.++.     =.+.|+||
T Consensus        33 g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g---a~~~i-~-~~~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          33 GAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG---ADHVV-D-ARRDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT---CSEEE-E-TTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc---cceee-c-CcccHHHHHHHhhCCCCceEEE
Confidence            357999998 9999998887776664 37888999862 22222221   11111 1 111112111     14699999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172          167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT  239 (412)
Q Consensus       167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt  239 (412)
                      .++|.+               ..    .+..-+.. |.+.++++..+.+..+|. ..++.     ..-+++|..
T Consensus       106 d~~g~~---------------~~----~~~a~~~l~~~G~iv~~G~~~~~~~~~-~~l~~-----k~~~i~Gs~  154 (172)
T d1h2ba2         106 DFVGSQ---------------AT----VDYTPYLLGRMGRLIIVGYGGELRFPT-IRVIS-----SEVSFEGSL  154 (172)
T ss_dssp             ESSCCH---------------HH----HHHGGGGEEEEEEEEECCCSSCCCCCH-HHHHH-----TTCEEEECC
T ss_pred             EecCcc---------------hH----HHHHHHHHhCCCEEEEEeCcccccCCH-HHHHh-----CCcEEEEEE
Confidence            997633               11    22222333 889888876655433444 23332     234788874

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=90.54  E-value=0.39  Score=41.36  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=28.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~  129 (412)
                      +||.|||- |..|..++-.+...++- -+.+.+|.|.
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   36 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL   36 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH
Confidence            58999998 99999999888877653 2778888774

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.54  E-value=0.16  Score=40.00  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.||+|||| |.+|.-+|..++..|.  +|.++...+
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            478999998 9999999999999998  999998765

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=90.37  E-value=0.63  Score=41.94  Aligned_cols=47  Identities=6%  Similarity=-0.061  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEee
Q 015172          323 AAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLI  372 (412)
Q Consensus       323 a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~  372 (412)
                      .++++|+||..|.   +.++.+.+.+.+    ++++.++-+||.|+++|+..+-
T Consensus       154 ~a~~ii~ai~~~~---~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~  204 (278)
T d1vjta2         154 QHIPFINAIANNK---RVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREK  204 (278)
T ss_dssp             SHHHHHHHHHHCC---CEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECC
T ss_pred             HHHHHHHHHhCCC---CeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeee
Confidence            4579999999994   566667766655    4677799999999999999974

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.35  E-value=0.46  Score=41.08  Aligned_cols=36  Identities=28%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      -+.++|+|-|- |.||..+|..|...|-  .|+..|++.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            34579999998 9999999999999997  999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.20  E-value=0.24  Score=40.43  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHH----hhcCCCcEEEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA----SALKGVNVVVI  167 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~----~al~~aDiVIi  167 (412)
                      ..+|.|.|+ |.||...+..+...|.  +|+..|.++. ...+.++-   ... +... ...|+.    +...+.|.+|+
T Consensus        28 g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~G---a~~-~~~~-~~~~~~~~~~~~~~~~~~~v~   99 (168)
T d1rjwa2          28 GEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKELG---ADL-VVNP-LKEDAAKFMKEKVGGVHAAVV   99 (168)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT---CSE-EECT-TTSCHHHHHHHHHSSEEEEEE
T ss_pred             CCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhcC---cce-eccc-ccchhhhhcccccCCCceEEe
Confidence            468999997 9999998888888887  8999998762 22333221   111 1111 112222    23467788888


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      +++.+               ..+....+.   ..|++.++++..+.+
T Consensus       100 ~~~~~---------------~~~~~a~~~---l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2         100 TAVSK---------------PAFQSAYNS---IRRGGACVLVGLPPE  128 (168)
T ss_dssp             SSCCH---------------HHHHHHHHH---EEEEEEEEECCCCSS
T ss_pred             ecCCH---------------HHHHHHHHH---hccCCceEecccccC
Confidence            76422               222222222   238898888865543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.18  Score=42.29  Aligned_cols=68  Identities=9%  Similarity=0.096  Sum_probs=39.4

Q ss_pred             CceEEEEcCCCCcHHH-HHHHHHhCCCCCeEE-EEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEc
Q 015172           93 SFKVAVLGAAGGIGQP-LALLIKMSPLVSALH-LYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIP  168 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~-L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIia  168 (412)
                      .+||+|||+ |.+|.. .+..+...+-.-+|+ ++|.+.....  .+.+. ... ...   .+|+++.++  +.|+|+++
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~--~~~~~-~~~-~~~---~~~~~ell~~~~id~v~I~   74 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAE--EFAKM-VGN-PAV---FDSYEELLESGLVDAVDLT   74 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH--HHHHH-HSS-CEE---ESCHHHHHHSSCCSEEEEC
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhh--hhhcc-ccc-cce---eeeeeccccccccceeecc
Confidence            368999998 999986 455555533222554 7888763221  11111 011 111   256776664  68999998

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.78  E-value=0.17  Score=43.18  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=46.5

Q ss_pred             CCceEEEEcC-CCCcHHHHHHHHHhCCCCCeEEEEecCch---h---hhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           92 ASFKVAVLGA-AGGIGQPLALLIKMSPLVSALHLYDVMNV---K---GVAADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGA-aG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~---g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      ...||+++|= ...|..+++..+...|.  +|++.=....   .   ..+.++.... ..   .+.-++|.+++++++|+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GA---KLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TC---EEEEESCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CC---eEEEEeChhhccccccE
Confidence            3579999994 13688888888888898  9999976431   1   1122222211 11   12235788899999999


Q ss_pred             EEEcC
Q 015172          165 VVIPA  169 (412)
Q Consensus       165 VIiaa  169 (412)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            88763

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.71  E-value=0.13  Score=47.01  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=32.7

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |.+...|+|||| |..|...|..|...|+  +++++|.++
T Consensus         4 p~~~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           4 PPEEVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             CCSEEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCCCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            334568999999 9999999999999999  999999876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.51  E-value=0.12  Score=44.54  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||+|||| |-.|.+.|..|...+.-.+|.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            39999998 999999999887653222999999875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.21  Score=43.76  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhh
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADL  137 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL  137 (412)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++....++
T Consensus         6 KvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l   49 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKL   49 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHh
Confidence            4456779999999999999999998  999999987  33334444

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.44  Score=47.18  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|+|+ |.+|..++..|+..|+ +.++|+|-+.
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            58999998 9999999999999995 7999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=89.31  E-value=0.68  Score=40.49  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      ..-|.|+||+|.+|..+|..|+.+|. ..|+|+..+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~   43 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRS   43 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCC
Confidence            34688999999999999999999995 468888654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.26  E-value=0.18  Score=44.15  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=44.7

Q ss_pred             ceE-EEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172           94 FKV-AVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP  172 (412)
Q Consensus        94 ~KV-~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p  172 (412)
                      ||| .|+||++.+|..+|..|+..|.  +|++.|+++.+. ..|+.+...   ..... .....+.....|++|..+|..
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~-~~d~~~~~~---~~~~~-~~~~~~~~~~id~lv~~Ag~~   73 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEV-IADLSTAEG---RKQAI-ADVLAKCSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSE-ECCTTSHHH---HHHHH-HHHHTTCTTCCSEEEECCCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHH-HHHhcCHHH---HHHHH-HHHHHHhCCCCcEEEEcCCCC
Confidence            555 5669999999999999999998  999999975211 112221100   00000 000112335689999998865


Q ss_pred             C
Q 015172          173 R  173 (412)
Q Consensus       173 ~  173 (412)
                      .
T Consensus        74 ~   74 (257)
T d1fjha_          74 P   74 (257)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.19  E-value=1.3  Score=39.24  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .+++.|+||+|  .+|..+|..|+..|.  +|++.|.+.
T Consensus         8 gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           8 GKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             TCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            36788889865  699999999999998  999999864

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.14  E-value=0.13  Score=42.60  Aligned_cols=70  Identities=16%  Similarity=0.227  Sum_probs=44.8

Q ss_pred             CceEEEEcC-CCCcHHHHHHHHHhCCCCCeEEEEecCch---hhh---hhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGA-AGGIGQPLALLIKMSPLVSALHLYDVMNV---KGV---AADLSHCNTPSQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGA-aG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~---~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ..||+++|= ...|-.+++..+...|.  ++++.=....   ...   ..++.... ..   .+.-++|++++++++|+|
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~-~~---~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKET-DG---SVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHH-CC---EEEEESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhc-CC---ceEEEecHHHhhhhhhhe
Confidence            479999993 24688888888888898  8888866431   111   11111111 11   223357888999999999


Q ss_pred             EEc
Q 015172          166 VIP  168 (412)
Q Consensus       166 Iia  168 (412)
                      ...
T Consensus        77 yt~   79 (161)
T d1vlva2          77 YTD   79 (161)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            986

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.14  E-value=0.59  Score=40.63  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~  129 (412)
                      .||.|||- |.-|..++-.+...++- -+.+.+|.|.
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   51 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA   51 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH
Confidence            58999998 99999999888877653 3777888874

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.95  E-value=1  Score=39.51  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             EEEE-cCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           96 VAVL-GAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        96 V~VI-GAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |+|| ||++.+|..+|..|+..|.  .|++.|.+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            5555 9989999999999999998  999988764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.87  E-value=0.65  Score=40.59  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHh---CCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKM---SPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~---~gl~~ev~L~Di~~  129 (412)
                      |+.|.|+||++.+|..+|..|+.   .|.  .|++.++++
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~   39 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNR   39 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCT
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            56799999999999999987764   576  999999986

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.15  Score=45.44  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      |+|||| |..|.+.|+.|+..|+  +|+++|-..
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789998 9999999999999998  999999765

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.11  E-value=0.4  Score=42.08  Aligned_cols=36  Identities=22%  Similarity=0.111  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.|.|+||++.+|..+|..|+..|..-.|++.+++.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            467788999999999999999998523677777765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.97  E-value=0.24  Score=39.43  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.++.|||+ |.+|.-+|..+...|.  +|++++..+
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            479999999 9999999999999998  999998865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.85  E-value=0.17  Score=39.95  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +++++|||| |.+|.-+|..+...|.  +|.++...+
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            368999999 9999999999999998  999998865

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.72  E-value=0.43  Score=39.56  Aligned_cols=96  Identities=18%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +..+|.|.||+|.+|......+...|.  +|+..|.++. ...+.++   .... +-++....+.....+++|+||.+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga~~-~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GAEE-AATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TCSE-EEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---ccce-eeehhhhhhhhhccccccccccccc
Confidence            356899999889999999888888897  8888887652 2222222   2111 1111110111124578999999865


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      ..          +       .   ..++-..|++.++.+.++.
T Consensus       101 ~~----------~-------~---~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2         101 KE----------V-------E---ESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             TT----------H-------H---HHHTTEEEEEEEEEC----
T ss_pred             hh----------H-------H---HHHHHHhcCCcEEEEeCCC
Confidence            11          1       1   1233334889888876654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.58  E-value=0.2  Score=43.34  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      -|.|||| |..|...|+.|+..|+  .|+|+|.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999999  999999875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.55  E-value=0.37  Score=37.91  Aligned_cols=95  Identities=8%  Similarity=0.023  Sum_probs=54.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCC-CcH----HhhcCCCcEEEEc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP-EEL----ASALKGVNVVVIP  168 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t-~d~----~~al~~aDiVIia  168 (412)
                      ++|.|+|. |.+|..++..|.  +.  +++++|.++....  .+......    .+.|. ++.    +..+.+|+.||++
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~~~----~i~Gd~~~~~~L~~a~i~~A~~vi~~   69 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSGAN----FVHGDPTRVSDLEKANVRGARAVIVN   69 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTTCE----EEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcCcc----ccccccCCHHHHHHhhhhcCcEEEEe
Confidence            36889998 999999998773  43  6788888863211  12221111    11111 111    1247899999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCC
Q 015172          169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVN  214 (412)
Q Consensus       169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~  214 (412)
                      ..         .|  ..|+.    ++..+++.+|+..+++-+ +|..
T Consensus        70 ~~---------~d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          70 LE---------SD--SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             CS---------SH--HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             cc---------ch--hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            31         11  34443    344566778987555554 4444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.22  E-value=0.22  Score=42.97  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      +.+.|.||++.+|..+|..|+..|.  .|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3566779999999999999999998  999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.79  E-value=1.4  Score=35.94  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .++..+|.|+|+ |.+|...+..++..+- .+|+..|.++
T Consensus        26 ~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~   63 (175)
T d1cdoa2          26 VEPGSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNP   63 (175)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCG
T ss_pred             CCCCCEEEEEec-CCccchHHHHHHHHhh-chheeecchH
Confidence            344568999998 9899888887777763 4899999987

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.05  E-value=1.4  Score=36.31  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh-----hcCCCcEE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS-----ALKGVNVV  165 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~-----al~~aDiV  165 (412)
                      ++...|.|.||+|.+|...+..+...|.  +|+-.+.++.+.  ..+.+......+ +.......++     .-++.|+|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~~~~--~~~~~~Ga~~vi-~~~~~~~~~~~~~~~~~~Gvd~v  102 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKI--AYLKQIGFDAAF-NYKTVNSLEEALKKASPDGYDCY  102 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTTCSEEE-ETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCHHHH--HHHHhhhhhhhc-ccccccHHHHHHHHhhcCCCcee
Confidence            3456899999988899999998889997  888887664221  111222211111 1111111111     22689999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172          166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV  213 (412)
Q Consensus       166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv  213 (412)
                      +.+.|                -+...+.   +....|++.++++.+.+
T Consensus       103 ~D~vG----------------~~~~~~~---~~~l~~~G~~v~~G~~~  131 (182)
T d1v3va2         103 FDNVG----------------GEFLNTV---LSQMKDFGKIAICGAIS  131 (182)
T ss_dssp             EESSC----------------HHHHHHH---GGGEEEEEEEEECCCGG
T ss_pred             EEecC----------------chhhhhh---hhhccCCCeEEeeccee
Confidence            99965                1222222   22233889888887543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.76  E-value=1.2  Score=36.27  Aligned_cols=75  Identities=19%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhc------CCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASAL------KGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~aDi  164 (412)
                      +..+|.|+|++|.+|...+..+...|. .+|+..|.++. ...+.++-   ....+. . ...|+.+.+      ++.|+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a~~~i~-~-~~~~~~~~~~~~~~~~~~d~  100 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---ADYVIN-A-SMQDPLAEIRRITESKGVDA  100 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---CSEEEE-T-TTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---Cceeec-c-CCcCHHHHHHHHhhcccchh
Confidence            356899999769999888877777774 38999998862 22333321   111111 1 112222221      46999


Q ss_pred             EEEcCCCC
Q 015172          165 VVIPAGVP  172 (412)
Q Consensus       165 VIiaag~p  172 (412)
                      ||.++|.+
T Consensus       101 vid~~g~~  108 (170)
T d1jvba2         101 VIDLNNSE  108 (170)
T ss_dssp             EEESCCCH
T ss_pred             hhcccccc
Confidence            99997643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.66  E-value=1.1  Score=36.44  Aligned_cols=77  Identities=17%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhh-----cCCCcE
Q 015172           91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASA-----LKGVNV  164 (412)
Q Consensus        91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~a-----l~~aDi  164 (412)
                      ++..+|.|+|+ |.+|...+..+...|. ..|+..|.++. ...+.++--   ...+.......+..+.     -.++|+
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa---~~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGA---TECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTC---SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCC---cEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence            34568999998 8898888888877774 47888888763 223333321   1111100001111111     268999


Q ss_pred             EEEcCCCC
Q 015172          165 VVIPAGVP  172 (412)
Q Consensus       165 VIiaag~p  172 (412)
                      ||.+.|.+
T Consensus       102 vid~~G~~  109 (176)
T d2fzwa2         102 SFECIGNV  109 (176)
T ss_dssp             EEECSCCH
T ss_pred             eeecCCCH
Confidence            99997633

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=85.08  E-value=0.96  Score=37.24  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      |+||+|+|++|++|....-.+...+---+|+.+=-+
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            568999999999999999888877421155555433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=0.98  Score=37.04  Aligned_cols=72  Identities=22%  Similarity=0.142  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhc------CCCcE
Q 015172           92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASAL------KGVNV  164 (412)
Q Consensus        92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~aDi  164 (412)
                      +..+|.|+||+|.+|......+...|.  +|+..|.++. ...+.++   .....+ ++ ...|+.+.+      ++.|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~l---Ga~~vi-~~-~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA---GAWQVI-NY-REEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH---TCSEEE-ET-TTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhc---CCeEEE-EC-CCCCHHHHHHHHhCCCCeEE
Confidence            346899999978799999988888898  9999999873 2223222   111111 11 223444333      56899


Q ss_pred             EEEcCC
Q 015172          165 VVIPAG  170 (412)
Q Consensus       165 VIiaag  170 (412)
                      |+.++|
T Consensus       101 v~d~~g  106 (179)
T d1qora2         101 VYDSVG  106 (179)
T ss_dssp             EEECSC
T ss_pred             EEeCcc
Confidence            999865

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=0.51  Score=39.79  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             CceEEEEcCCC--CcHHHHHHHHHhCCCCCeEEEEecCch------hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172           93 SFKVAVLGAAG--GIGQPLALLIKMSPLVSALHLYDVMNV------KGVAADLSHCNTPSQVLDFTGPEELASALKGVNV  164 (412)
Q Consensus        93 ~~KV~VIGAaG--~vG~~iA~~l~~~gl~~ev~L~Di~~~------~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi  164 (412)
                      ..||+++|= |  .|..+++..+...|.  +|++.=....      ...+.+.... .....   .-+.|.+++++++|+
T Consensus         5 ~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~---~~~~d~~~a~~~aDv   77 (183)
T d1duvg2           5 EMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNI---TLTEDVAKGVEGADF   77 (183)
T ss_dssp             GCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEE---EEESCHHHHHTTCSE
T ss_pred             CCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCce---EEEechhhccccCCE
Confidence            479999995 4  577788777777798  9999876541      1112222221 11212   224788889999999


Q ss_pred             EEEcC
Q 015172          165 VVIPA  169 (412)
Q Consensus       165 VIiaa  169 (412)
                      |....
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            88863

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.34  E-value=0.5  Score=36.47  Aligned_cols=36  Identities=14%  Similarity=0.068  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~  129 (412)
                      ++||+|||| |.+|.-+|..+... ....+|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            468999999 99999999766543 2223999999865

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=84.19  E-value=0.34  Score=42.27  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..|.|||| |..|...|+.++..|+  +|.|+|.+.
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999998 9999999999999998  999999876

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=0.27  Score=41.00  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      ..+|.|||+ |..|...|..++..|+  +++++|...
T Consensus         5 ~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            358999999 9999999999999998  899998654

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.66  E-value=1.5  Score=37.69  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=27.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCC-eEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVS-ALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~-ev~L~Di~~  129 (412)
                      +|.|||- |..|..++-.+...++.+ +++.+|.|.
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~   37 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA   37 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH
Confidence            6889998 999999999998887532 777777764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.61  E-value=0.32  Score=40.78  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM  128 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~  128 (412)
                      ..+|.|||| |..|...|..++..|+  +++++|..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            368999999 9999999999999998  88999854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=83.11  E-value=0.38  Score=43.12  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHh-----CCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKM-----SPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~-----~gl~~ev~L~Di~~  129 (412)
                      .-|.|||| |-+|..+|..|++     .|+  +|+|+|..+
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            46999999 9999999999974     688  999999864

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.05  E-value=0.99  Score=38.84  Aligned_cols=108  Identities=18%  Similarity=0.250  Sum_probs=58.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCc-hhhhh---hhhccc--CCC-----C--ce---eeecCCCcHHh
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMN-VKGVA---ADLSHC--NTP-----S--QV---LDFTGPEELAS  157 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~-~~g~~---~dL~~~--~~~-----~--~v---~~i~~t~d~~~  157 (412)
                      +|-|||- |..|..++..+...++. -+++.+|.|. .....   ..+.-.  .+.     .  .+   ..........+
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~I~~   81 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEE   81 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHHHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHHHHH
Confidence            6788998 99999999999888753 2777777764 11000   000000  000     0  00   00001123456


Q ss_pred             hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172          158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN  214 (412)
Q Consensus       158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~  214 (412)
                      .++++|+||++||.....|.       -=.+++.+++++..    --.+-++|-|-.
T Consensus        82 ~l~~~d~vfi~AGlGGgTGt-------GaaPviA~iake~g----~l~v~ivt~PF~  127 (198)
T d1rq2a1          82 LLRGADMVFVTAGEGGGTGT-------GGAPVVASIARKLG----ALTVGVVTRPFS  127 (198)
T ss_dssp             HHTTCSEEEEEEETTSSHHH-------HHHHHHHHHHHHHT----CEEEEEEEECCG
T ss_pred             HhcCCCEEEEEEecCCCCCc-------chHHHHHHHHHHcC----CcEEEEEecChH
Confidence            78999999999886633221       22567777776642    122344565654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.92  E-value=0.43  Score=38.53  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||.|||| |.+|..+|..|.. +.  +|.+++...
T Consensus         1 ~rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             CeEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            38999998 9999999987754 54  899998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=82.33  E-value=0.47  Score=42.01  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~  129 (412)
                      .-|.|||| |..|...|+.|+.+ |+  +|+++|..+
T Consensus        34 ~DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            35999998 99999999999875 99  999999865

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.06  E-value=8.2  Score=29.55  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAA---GGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAa---G~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.|+||||+   +..|..+...|...|+  +|+.+..+.  .   ++..      +..   ..++++.=...|++++.. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~--~---~i~G------~~~---y~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY--D---EIEG------LKC---YRSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--S---EETT------EEC---BSSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEcccc--c---cccC------ccc---cccchhccccceEEEEEe-
Confidence            579999985   5678899999999998  787775431  1   1111      111   123443224569998873 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI  206 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv  206 (412)
                       |              .+.+.++.+++.+..+.+++
T Consensus        65 -p--------------~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          65 -P--------------PKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             -C--------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             -C--------------HHHHHHHHHHHHhcCCceEE
Confidence             1              45555666666666666655

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=82.02  E-value=0.49  Score=38.54  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV  127 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di  127 (412)
                      ..+|.|||| |.+|.-+|..|...+.-..|.+++.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            468999998 9999999999999887334444444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=81.79  E-value=7  Score=30.80  Aligned_cols=114  Identities=12%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             ceEEEEcCC---CCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172           94 FKVAVLGAA---GGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG  170 (412)
Q Consensus        94 ~KV~VIGAa---G~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag  170 (412)
                      +.|+||||+   +..|..+...|...|.  .+.++-.+.....   +..      ..   ...++.+.=...|+|++.. 
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~g------~~---~~~~l~~i~~~iD~v~v~~-   78 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LFG------EE---AVASLLDLKEPVDILDVFR-   78 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ETT------EE---CBSSGGGCCSCCSEEEECS-
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---eec------ee---cccchhhccCCCceEEEec-
Confidence            579999986   4578888888999998  8888876531111   111      11   1233443224579999983 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cc-cchHH
Q 015172          171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TT-LDVVR  245 (412)
Q Consensus       171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~-Lds~R  245 (412)
                                     +.+.+.++++++.+....++++...--.+    -+.+++++.+ +   ++|+= |. ++..|
T Consensus        79 ---------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~----e~~~~a~~~G-i---~vV~~~C~~ie~~r  132 (136)
T d1iuka_          79 ---------------PPSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEAG-I---PVVADRCLMVEHKR  132 (136)
T ss_dssp             ---------------CHHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHTT-C---CEEESCCHHHHHHH
T ss_pred             ---------------cHHHHHHHHHHHHhhCCCeEEEecCccCH----HHHHHHHHcC-C---EEEcCCccHHHHHH
Confidence                           24445555555556666665533222222    2356666653 3   67764 64 44334

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.37  E-value=5.4  Score=31.28  Aligned_cols=86  Identities=13%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             CceEEEEcCC---CCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172           93 SFKVAVLGAA---GGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA  169 (412)
Q Consensus        93 ~~KV~VIGAa---G~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa  169 (412)
                      ++.|+||||+   +..|..+...|...+ ..+|+.+....     .++..      +..+   .++++-=...|+++++.
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~-----~~i~G------~~~y---~sl~dlp~~vDlvvi~v   72 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKE-----EEVQG------VKAY---KSVKDIPDEIDLAIIVV   72 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSC-----SEETT------EECB---SSTTSCSSCCSEEEECS
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCc-----cccCC------eEee---cchhhcCCCCceEEEec
Confidence            4689999997   788888887776555 45888886542     11111      1111   22332124689999983


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE
Q 015172          170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII  209 (412)
Q Consensus       170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~  209 (412)
                      .                .+.+.++++++.+..-.++++..
T Consensus        73 p----------------~~~~~~~~~~~~~~g~~~~vi~s   96 (129)
T d2csua1          73 P----------------KRFVKDTLIQCGEKGVKGVVIIT   96 (129)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCCEEEECC
T ss_pred             C----------------hHHhHHHHHHHHHcCCCEEEEec
Confidence            1                45556666777666655554443

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.28  E-value=5.3  Score=35.97  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=27.1

Q ss_pred             ceEEEE-cCC--CCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVL-GAA--GGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VI-GAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .||++| ||+  ..+|..+|..|+..|-  +|+|.+...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA--~V~i~~~~~   38 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNV--KIIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEECGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCC--EEEEEeCch
Confidence            366665 752  2799999999999998  999988754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=81.13  E-value=5.6  Score=34.49  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHhCCC---CCeEEEEecCc---hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEE
Q 015172           93 SFKVAVLGAAGGIGQPLALLIKMSPL---VSALHLYDVMN---VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVV  165 (412)
Q Consensus        93 ~~KV~VIGAaG~vG~~iA~~l~~~gl---~~ev~L~Di~~---~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiV  165 (412)
                      ++||+|||= |.=|..-|+.|.+.|+   .+-.+.+-..+   ....+.  .+ ... .....    -+.+|+.+.||+|
T Consensus        44 ~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~d-Gf~v~~~~v----~~v~EAv~~ADiV  115 (226)
T d1qmga2          44 IKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AA-GFSEENGTL----GDMWETISGSDLV  115 (226)
T ss_dssp             CSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HT-TCCGGGTCE----EEHHHHHHTCSEE
T ss_pred             CCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--Hc-CCccCCCcc----cCHHHHHhhCCEE
Confidence            468999998 9999999999999653   01112333322   111111  11 111 11111    1356789999999


Q ss_pred             EEcC
Q 015172          166 VIPA  169 (412)
Q Consensus       166 Iiaa  169 (412)
                      .+..
T Consensus       116 miLl  119 (226)
T d1qmga2         116 LLLI  119 (226)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9983

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.85  E-value=0.64  Score=39.27  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .-|+|||+ |..|...|..++..|.  +|.|+|..+
T Consensus         6 yDviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           6 HDVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            35999998 9999999999999999  999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=0.66  Score=39.06  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=29.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      -|.|||| |..|...|..++..|+  .|.|+|.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            5899998 9999999999999999  999999764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.15  E-value=0.61  Score=41.53  Aligned_cols=33  Identities=27%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172           94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN  129 (412)
Q Consensus        94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~  129 (412)
                      .-|.|||+ |..|...|+.++..|+  .|+|+|...
T Consensus        17 ~DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            46999998 9999999999999998  999999865