Citrus Sinensis ID: 015176

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
MSSCMMKSSSQKLENIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKTPPSSDVEACGASSTVLTESVANEGSAPISPRDSEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANLR
cccccccccHHHHHHccccccccccccccccccccccccHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccEEEEcccccEEEEEEEEEEccccEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHcc
cccccccccHHHHccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHcccccccccccHHccccccccccccccccccHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHccccEEEEcccccEEEEEEEEEEccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHHHccc
msscmmksssqklenidengpakwlplscappetptesMEFLARSWSLSAMELSTALSTTHVslnsldidktppssdveacgasstVLTEsvanegsapisprdseEMREIFVLHQalhpeflssqpllknglyksIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAAtttsqemttvqqkssckTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAvnartngdimTLTAGAATALRGAATLRARLQKGYGMTTISLAEekghegkesNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVIcdiprwppreseddseqrAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANLR
msscmmkssSQKLENIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKTPPSSDVEACGASStvltesvanegsapisprdSEEMREIFVLHQALhpeflssqpllknGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGaftkkkkcivsAVICDIprwppreseddseqrayfgiktadrvIEFECRNKGDKQMWVEGIQHILNCCANLR
msscmmksssQKLENIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKTPPSSDVEACGASSTVLTESVANEGSAPISPRDSEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHaavsvvgvaaaiaaitaatttsqemttvqqKSSCKTsaavasaaalvasHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMtltagaatalrgaatlrarlQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANLR
*********************************************W***************************************************************EIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWL************AHNAQLHAAVSVVGVAAAIAAITAATT*****************AAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISL***************ALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRW************AYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCA***
****************************************FLARSWSLSAMELS************************************************************************P*L***L*K*IMRGRT**********************LHAAVSVVGVAAAIAAITAA*******************AAVASAAALVASHCIEIAEDMGADHDQILTVV*********GDIMTLTAGAATALRGAATL*********************EGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDI**************RAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCC****
**************NIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKT**************VLTE**************SEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLK***********AHNAQLHAAVSVVGVAAAIAAITAATT***********************AALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWP*********QRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANLR
*********************AKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALS***********************************************EEMREIFVLHQALHPEFLSSQPLLK*GLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTS**************************SHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCAN**
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MSSCMMKSSSQKLENIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKTPPSSDVEACGASSTVLTESVANEGSAPISPRDSEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
296081861424 unnamed protein product [Vitis vinifera] 0.985 0.957 0.697 1e-147
359476040389 PREDICTED: uncharacterized protein LOC10 0.910 0.964 0.657 1e-131
255550988422 ice binding protein, putative [Ricinus c 0.905 0.883 0.688 1e-131
358344720413 hypothetical protein MTR_041s0003 [Medic 0.978 0.975 0.647 1e-126
356510017397 PREDICTED: uncharacterized protein LOC10 0.905 0.939 0.642 1e-125
356518332400 PREDICTED: uncharacterized protein LOC10 0.900 0.927 0.633 1e-122
449437252394 PREDICTED: uncharacterized protein LOC10 0.917 0.959 0.602 1e-117
357471039350 hypothetical protein MTR_4g039910 [Medic 0.655 0.771 0.672 2e-87
224142983280 predicted protein [Populus trichocarpa] 0.621 0.914 0.745 1e-86
242055855422 hypothetical protein SORBIDRAFT_03g00081 0.907 0.886 0.465 4e-67
>gi|296081861|emb|CBI20866.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/407 (69%), Positives = 327/407 (80%), Gaps = 1/407 (0%)

Query: 6   MKSSSQKLENIDENGPAKWLPLSCAPPETPTESMEFLARSWSLSAMELSTALSTTHVSLN 65
            K  S++LENI+E+GPA WLP +CAPPETP ESMEFLARSWSLSAMEL+ AL+  ++   
Sbjct: 17  FKCPSRRLENIEEDGPASWLPETCAPPETPIESMEFLARSWSLSAMELAKALAADNLDKY 76

Query: 66  SLDID-KTPPSSDVEACGASSTVLTESVANEGSAPISPRDSEEMREIFVLHQALHPEFLS 124
           S            V +  AS   + + +   GS PISPRDS++M+E+F+LHQAL+P+FLS
Sbjct: 77  SAFCSVGNEAEIHVASSVASEEAIIQQLPGGGSPPISPRDSDDMKELFLLHQALNPDFLS 136

Query: 125 SQPLLKNGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAA 184
           +Q LL+NGLYKSIMRG+T GRWLKDQKERKKQEIR HNAQLHAAVSV GVAAA+AA+ A+
Sbjct: 137 NQQLLRNGLYKSIMRGKTFGRWLKDQKERKKQEIRTHNAQLHAAVSVAGVAAAVAALAAS 196

Query: 185 TTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTN 244
              S E+   Q K   KTSAA+ASAAALVASHCIEIAEDMGADHD IL  VNSAVNARTN
Sbjct: 197 NAASPEVLATQHKKPSKTSAAIASAAALVASHCIEIAEDMGADHDHILMAVNSAVNARTN 256

Query: 245 GDIMTLTAGAATALRGAATLRARLQKGYGMTTISLAEEKGHEGKESNISAALNLVSKGGE 304
           GDIMTLTAGAATALRGAATLRARLQKG G  T+ L+EE+  EG+ESNI  ALN VS+GGE
Sbjct: 257 GDIMTLTAGAATALRGAATLRARLQKGCGTATLVLSEEQIEEGRESNILIALNFVSRGGE 316

Query: 305 LLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIPRWPPRE 364
           LLKRTRKGALHWKQVSFNI+S  QV  K+KSKHMAG FTKKKKC+VS V CDIP WP RE
Sbjct: 317 LLKRTRKGALHWKQVSFNIDSCWQVAVKMKSKHMAGTFTKKKKCVVSGVYCDIPAWPGRE 376

Query: 365 SEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCANL 411
            E+ SEQRAYFGIKT DR+IEFECRN  DKQMW EGIQ++L+C A++
Sbjct: 377 REESSEQRAYFGIKTDDRIIEFECRNNSDKQMWAEGIQYMLHCRASM 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476040|ref|XP_002281374.2| PREDICTED: uncharacterized protein LOC100261152 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255550988|ref|XP_002516542.1| ice binding protein, putative [Ricinus communis] gi|223544362|gb|EEF45883.1| ice binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|358344720|ref|XP_003636435.1| hypothetical protein MTR_041s0003 [Medicago truncatula] gi|355502370|gb|AES83573.1| hypothetical protein MTR_041s0003 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510017|ref|XP_003523737.1| PREDICTED: uncharacterized protein LOC100814154 [Glycine max] Back     alignment and taxonomy information
>gi|356518332|ref|XP_003527833.1| PREDICTED: uncharacterized protein LOC100815080 [Glycine max] Back     alignment and taxonomy information
>gi|449437252|ref|XP_004136406.1| PREDICTED: uncharacterized protein LOC101221437 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357471039|ref|XP_003605804.1| hypothetical protein MTR_4g039910 [Medicago truncatula] gi|355506859|gb|AES88001.1| hypothetical protein MTR_4g039910 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224142983|ref|XP_002324805.1| predicted protein [Populus trichocarpa] gi|222866239|gb|EEF03370.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242055855|ref|XP_002457073.1| hypothetical protein SORBIDRAFT_03g000810 [Sorghum bicolor] gi|241929048|gb|EES02193.1| hypothetical protein SORBIDRAFT_03g000810 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
TAIR|locus:2130185475 AT4G14740 [Arabidopsis thalian 0.259 0.225 0.481 2.7e-52
TAIR|locus:2149514453 AT5G43870 [Arabidopsis thalian 0.745 0.677 0.325 2e-51
TAIR|locus:2094414472 AT3G22810 [Arabidopsis thalian 0.337 0.294 0.401 1.4e-45
TAIR|locus:2077294498 FKD1 "FORKED 1" [Arabidopsis t 0.269 0.222 0.513 3.3e-44
TAIR|locus:2130888405 AT4G17350 [Arabidopsis thalian 0.674 0.686 0.282 8.3e-39
TAIR|locus:1006230325124 AT4G32785 [Arabidopsis thalian 0.269 0.895 0.669 6.3e-37
TAIR|locus:2129031429 AT4G16670 [Arabidopsis thalian 0.662 0.636 0.277 9.2e-36
TAIR|locus:2125667270 AT4G32780 "AT4G32780" [Arabido 0.533 0.814 0.367 2.1e-29
TAIR|locus:2168943406 AT5G47440 [Arabidopsis thalian 0.728 0.738 0.269 5.7e-27
TAIR|locus:2130185 AT4G14740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 265 (98.3 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
 Identities = 52/108 (48%), Positives = 73/108 (67%)

Query:   299 VSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCIVSAVICDIP 358
             +++G ELLKRTRKG LHWK VS  IN   QV+ K+KS+H+ G FTKKKK IV  VI ++P
Sbjct:   358 LARGCELLKRTRKGDLHWKIVSVYINKMNQVMLKMKSRHVGGTFTKKKKNIVLDVIKNVP 417

Query:   359 RWPPRESEDDSEQRAYFGIKTADRV-IEFECRNKGDKQMWVEGIQHIL 405
              WP R   +  +   YFG+KT  R  +EFE +++ + +MW +G+  +L
Sbjct:   418 AWPGRHLLEGGDDLRYFGLKTVMRGDVEFEVKSQREYEMWTQGVSRLL 465
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=ISM
GO:0007165 "signal transduction" evidence=ISS
GO:0035091 "phosphatidylinositol binding" evidence=ISS
TAIR|locus:2149514 AT5G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094414 AT3G22810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077294 FKD1 "FORKED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130888 AT4G17350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230325 AT4G32785 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129031 AT4G16670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125667 AT4G32780 "AT4G32780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168943 AT5G47440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032444001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (386 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
pfam05703226 pfam05703, Auxin_canalis, Auxin canalisation 1e-61
pfam08458110 pfam08458, PH_2, Plant pleckstrin homology-like re 3e-40
smart00233102 smart00233, PH, Pleckstrin homology domain 1e-05
pfam00169101 pfam00169, PH, PH domain 4e-04
>gnl|CDD|218706 pfam05703, Auxin_canalis, Auxin canalisation Back     alignment and domain information 
 Score =  198 bits (505), Expect = 1e-61
 Identities = 106/247 (42%), Positives = 141/247 (57%), Gaps = 44/247 (17%)

Query: 32  PETPTESMEFLARSWSLSAMELSTALSTTHVSLNSLDIDKTPPSSDVEACGASSTVLTES 91
           P+TP+E MEFL+RSWSLSA E+S AL       + L        S V     +S ++ + 
Sbjct: 1   PQTPSEPMEFLSRSWSLSASEISKALHPKVRQGSEL--------SFVGN--RTSGLVMDR 50

Query: 92  VANEG---SAPISPRDSEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLK 148
           ++++    S PISPR  +++ ++   +                         +T+GRW  
Sbjct: 51  ISSQPDADSPPISPRKLDDVVKLRRANG-----------------------RKTIGRWFH 87

Query: 149 DQKE-----RKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTS 203
            +KE     +KK E R  NAQ+HAAVSV  VAAA+AA+TAAT  S            K  
Sbjct: 88  HRKESSGNRKKKDEARVENAQVHAAVSVAAVAAAVAAVTAATNASSSGGDGA---GSKMD 144

Query: 204 AAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAAT 263
            A+ASAAALVASHC+E+AE  GAD DQ+ + V SAV+ R+ GD+MTLTA AATALRGAAT
Sbjct: 145 TALASAAALVASHCVEMAESAGADRDQVASAVRSAVDVRSPGDLMTLTAAAATALRGAAT 204

Query: 264 LRARLQK 270
           L+AR  K
Sbjct: 205 LKARAPK 211

This domain is frequently found at the N-terminus of proteins containing pfam08458 at the C-terminus. It is a component of the auto-regulatory loop which enables auxin canalisation by recruitment of the PIN1 auxin efflux protein to the cell membrane. Length = 226
>gnl|CDD|219853 pfam08458, PH_2, Plant pleckstrin homology-like region Back     alignment and domain information
>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain Back     alignment and domain information
>gnl|CDD|215766 pfam00169, PH, PH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
PF05703242 Auxin_canalis: Auxin canalisation; InterPro: IPR00 100.0
PF08458110 PH_2: Plant pleckstrin homology-like region; Inter 100.0
PF12814123 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin 97.27
smart00233102 PH Pleckstrin homology domain. Domain commonly fou 96.74
PF00169104 PH: PH domain; InterPro: IPR001849 The pleckstrin 96.36
cd0125094 PH_centaurin Centaurin Pleckstrin homology (PH) do 95.37
cd0082196 PH Pleckstrin homology (PH) domain. Pleckstrin hom 94.95
cd01249104 PH_oligophrenin Oligophrenin Pleckstrin homology ( 93.05
cd01219101 PH_FGD FGD (faciogenital dysplasia protein) plecks 92.99
cd01235101 PH_SETbf Set binding factor Pleckstrin Homology (P 92.84
cd0122099 PH_CDEP Chondrocyte-derived ezrin-like domain cont 92.67
cd01261112 PH_SOS Son of Sevenless (SOS) Pleckstrin homology 90.79
cd0090099 PH-like Pleckstrin homology-like domain. Pleckstri 89.84
cd01233100 Unc104 Unc-104 pleckstrin homology (PH) domain. Un 88.14
cd01254121 PH_PLD Phospholipase D (PLD) pleckstrin homology ( 86.76
cd01251103 PH_centaurin_alpha Centaurin alpha Pleckstrin homo 85.78
cd0126595 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain 84.85
cd01248115 PH_PLC Phospholipase C (PLC) pleckstrin homology ( 81.6
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=2.4e-80  Score=588.75  Aligned_cols=224  Identities=54%  Similarity=0.694  Sum_probs=190.7

Q ss_pred             CCCCcchhhhhcccccccHHHHHHhcccCCCCC-CCc--CCCC-----CCCCCCcccccccccccccccC-------CCC
Q 015176           32 PETPTESMEFLARSWSLSAMELSTALSTTHVSL-NSL--DIDK-----TPPSSDVEACGASSTVLTESVA-------NEG   96 (412)
Q Consensus        32 PetP~epMEFLSRSWS~SA~evskaL~~~~~~~-~~~--~~~~-----~~~~~~~~~~~as~~t~~~~~~-------~~~   96 (412)
                      ||||+|||||||||||+||+||||+|++.+... ...  +.+.     ....+++|+ |++..|+++++.       ...
T Consensus         1 PETP~EPMEFLSRSWSvSAsEVSKAL~~~s~~~~ss~~~~~~~~~~~~~~~~~~~~s-~~~~~t~~lv~~~~~~~~~~~~   79 (242)
T PF05703_consen    1 PETPREPMEFLSRSWSVSASEVSKALSPPSNRSISSFIDPEDAESDNDKDRFGSSFS-FASSATSQLVMDRIMSQSSGAD   79 (242)
T ss_pred             CCCCcccHHHHHHhhhhhHHHHhhhcCCcccccccccccccchhccccccccCCCCC-cccccCcccccccccccccccC
Confidence            899999999999999999999999999843221 111  1111     122456777 888888888753       355


Q ss_pred             CCCCCCCChhhHHHHHHHhhccCccccccchhhcccccccccCccccchhhhhhHHHhHHHHHhhhhhhhHHHhHHHHHH
Q 015176           97 SAPISPRDSEEMREIFVLHQALHPEFLSSQPLLKNGLYKSIMRGRTMGRWLKDQKERKKQEIRAHNAQLHAAVSVVGVAA  176 (412)
Q Consensus        97 ~p~~sp~~~~d~k~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~g~tvgrW~k~~k~KKKee~R~~nAqvHAAVSVAgvAA  176 (412)
                      +||++|++.++.+.++..                       .++++|||||||+|+|||||+|+||||||||||||||||
T Consensus        80 spp~sp~~~~~~~~~~~~-----------------------~~~~~i~~w~~~~~~kkkee~R~~~A~vhaAvSVA~vAa  136 (242)
T PF05703_consen   80 SPPISPRDLDDSKKIIRA-----------------------NGGKTIGRWLKDRKEKKKEEARAHNAQVHAAVSVAGVAA  136 (242)
T ss_pred             CCCcchhhHHHHHHHHHh-----------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999876665533211                       168899999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccccchhhcccccchhhHHHHhHHHHHHHhHHHHHHhcCCCchhHHHHhhhhhcccCCChhHHHhHHHHh
Q 015176          177 AIAAITAATTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAVNARTNGDIMTLTAGAAT  256 (412)
Q Consensus       177 AvAAvaAa~a~~~~~~~~~~~~~~k~~~a~ASAa~LvAa~C~e~AE~~GA~rd~vasaV~sav~~~S~gDimTLTAaAAT  256 (412)
                      |||||+++++.+++.+  .+++++||++||||||+|||+||+|+||.|||+||||+++|+||||+||+||||||||+|||
T Consensus       137 avAavaa~~~~~~~~~--~~~~~~k~~~avASAa~LvAa~C~e~Ae~~GA~~~~v~s~v~sav~~~s~gdi~TLTAaAAT  214 (242)
T PF05703_consen  137 AVAAVAAATAASSSSG--KDESSSKMDAAVASAAALVAAQCAEAAEAAGADRDQVASAVRSAVNVRSPGDIMTLTAAAAT  214 (242)
T ss_pred             HHHHHHhhcccccCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Confidence            9999999999765543  24568999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhccc--Ccccccccc
Q 015176          257 ALRGAATLRARLQKGY--GMTTISLAE  281 (412)
Q Consensus       257 aLRGAAtLKaR~~ke~--~aav~P~~~  281 (412)
                      |||||||||+|++||+  +|+|+|||+
T Consensus       215 aLRGaa~Lk~R~~ke~~~~a~v~P~e~  241 (242)
T PF05703_consen  215 ALRGAATLKARAQKEARSNAAVLPYEK  241 (242)
T ss_pred             cCchHHHHHHHHhhhhhcccccccCCC
Confidence            9999999999999999  599999976

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function Back     alignment and domain information
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis Back     alignment and domain information
>smart00233 PH Pleckstrin homology domain Back     alignment and domain information
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] Back     alignment and domain information
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd00821 PH Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain Back     alignment and domain information
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain Back     alignment and domain information
>cd00900 PH-like Pleckstrin homology-like domain Back     alignment and domain information
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain Back     alignment and domain information
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain Back     alignment and domain information
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain Back     alignment and domain information
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
2lul_A164 Tyrosine-protein kinase TEC; structural genomics, 94.37
2cod_A115 Centaurin-delta 1; ARF GAP and RHO GAP with ankyri 93.83
2rlo_A128 Centaurin-gamma 1; split PH domain, alternative sp 93.66
2dn6_A115 KIAA0640 protein; PH domain, structural genomics, 93.43
1mai_A131 Phospholipase C delta-1; pleckstrin, inositol tris 93.36
2dhk_A119 TBC1 domain family member 2; PH domain, paris-1, s 92.26
4h8s_A407 DCC-interacting protein 13-beta; BAR domain, pleck 91.99
2q13_A385 DCC-interacting protein 13 alpha; APPL1, BAR domai 91.81
1eaz_A125 Tandem PH domain containing protein-1; lipid-bindi 91.16
1fao_A126 Dual adaptor of phosphotyrosine and 3- phosphoinos 91.02
1u5d_A108 SKAP55, SRC kinase-associated phosphoprotein of 55 90.61
3aj4_A112 Pleckstrin homology domain-containing family B ME; 90.25
2d9y_A117 Pleckstrin homology domain-containing protein fami 89.69
2da0_A114 130-kDa phosphatidylinositol 4,5-biphosphate- depe 89.56
2dkp_A128 Pleckstrin homology domain-containing family A mem 89.51
1v5u_A117 SBF1, SET binding factor 1; MTMR5, the pleckstrin 89.49
2yry_A122 Pleckstrin homology domain-containing family A mem 89.22
1btk_A169 Bruton'S tyrosine kinase; transferase, PH domain, 89.2
2cof_A107 Protein KIAA1914; PH domain, structural genomics, 88.23
3mpx_A434 FYVE, rhogef and PH domain-containing protein 5; s 88.03
2i5f_A109 Pleckstrin; PH domain, protein-inositol phosphate 87.88
1upq_A123 PEPP1; PH domain, phosphoinositide binding, signal 87.38
2rsg_A94 Collagen type IV alpha-3-binding protein; pleckstr 87.35
1u5f_A148 SRC-associated adaptor protein; PH domain of SKAP- 87.32
1pls_A113 Pleckstrin homology domain; phosphorylation; NMR { 87.3
2d9v_A130 Pleckstrin homology domain-containing protein fami 87.21
3p6a_A377 RHO guanine nucleotide exchange factor 1; regulati 86.9
2j59_M168 RHO-GTPase activating protein 10; ARF, ARF1, ARFBD 86.36
1wg7_A150 Dedicator of cytokinesis protein 9; pleckstrin hom 85.01
1wjm_A123 Beta-spectrin III; PH domain, signal transduction, 84.98
1x1g_A129 Pleckstrin 2; PH domain, structural genomics, rike 83.73
2lg1_A185 A-kinase anchor protein 13; metal binding protein; 83.7
1v89_A118 Hypothetical protein KIAA0053; pleckstrin homology 82.78
1x05_A129 Pleckstrin; PH domain, structural genomics, NPPSFA 82.77
2d9x_A120 Oxysterol binding protein-related protein 11; PH d 81.24
1wgq_A109 FYVE, rhogef and PH domain containing 6; ethanol d 80.86
1v5p_A126 Pleckstrin homology domain-containing, family A; T 80.29
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Back     alignment and structure
Probab=94.37  E-value=0.35  Score=41.94  Aligned_cols=102  Identities=15%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             cccceeeeeccC----CceeeEEEEEEeCCCcEEEEEeccc----cccccccccceeEEEeeecCCCCCCCCCCCCCCCc
Q 015176          300 SKGGELLKRTRK----GALHWKQVSFNINSNLQVVAKLKSK----HMAGAFTKKKKCIVSAVICDIPRWPPRESEDDSEQ  371 (412)
Q Consensus       300 ~kg~eLlkrtrk----G~lhwk~Vsvyin~~~qVilKmksk----hv~Gafskkkk~vV~~V~~~~pawpgr~~~~~~~~  371 (412)
                      -++|-|+||...    |.--||.==+.+.. ++ +.=-|++    ..-|.|.-..-.+|..|..+.       .....+.
T Consensus        16 i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~-~~-L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~-------~~~~~~~   86 (164)
T 2lul_A           16 ILEEILIKRSQQKKKTSPLNYKERLFVLTK-SM-LTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDD-------GVIPCQN   86 (164)
T ss_dssp             EEEEEEEEECCCCSSSCCCCEEEEEEEEES-SE-EEEECCCSSSCCCCCEEEGGGCCEEEECCCCS-------SSCCSSS
T ss_pred             eEEEEEEEecCCCCCCCCCCceeEEEEEEC-CE-EEEEeccCcccccccEEEEeeeEEEEeccccc-------cCccccc
Confidence            368899999754    23358877666653 22 2222222    233544444434444443331       1111234


Q ss_pred             eeEEEEEecCeeEEEEeCCcchhhhHHHHHHHHHhhhhc
Q 015176          372 RAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCAN  410 (412)
Q Consensus       372 r~YFgLkTa~g~vEfec~s~~~~q~W~~gI~~lL~~~~~  410 (412)
                      ...|.|.|..+++-|.++|..+.+.|++.|+...+...+
T Consensus        87 ~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~  125 (164)
T 2lul_A           87 KYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNN  125 (164)
T ss_dssp             CSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTTCSC
T ss_pred             ceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHHChh
Confidence            456999999999999999999999999999998876544
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Back     alignment and structure
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Back     alignment and structure
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} Back     alignment and structure
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Back     alignment and structure
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Back     alignment and structure
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Back     alignment and structure
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Back     alignment and structure
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Back     alignment and structure
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Back     alignment and structure
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Back     alignment and structure
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Back     alignment and structure
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Back     alignment and structure
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Back     alignment and structure
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Back     alignment and structure
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Back     alignment and structure
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 412
d1maia_119 b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus 2e-05
d1wi1a_126 b.55.1.1 (A:) Calcium-dependent activator protein 1e-04
d2elba2101 b.55.1.1 (A:274-374) DCC-interacting protein 13-al 5e-04
d1upqa_107 b.55.1.1 (A:) Phosphoinositol 3-phosphate binding 7e-04
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 295 ALNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSKHMAGAFTKKKKCI--VSA 352
            L  + KG +LLK         ++  + +  + + +   +S+ +  +   +   I  +  
Sbjct: 7   DLQALLKGSQLLKVKSSS--WRRERFYKLQEDCKTI-WQESRKVMRSPESQLFSIEDIQE 63

Query: 353 VI--CDIPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILN 406
           V              +   ++      K     ++    +  D Q WV+G++ I++
Sbjct: 64  VRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIH 119
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d1maia_119 Phospholipase C delta-1 {Rat (Rattus norvegicus) [ 97.31
d1x1ga1116 Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} 95.79
d1u5fa1111 Src-associated adaptor protein Skap2 {Mouse (Mus m 95.56
d1eaza_103 Tapp1 {Human (Homo sapiens) [TaxId: 9606]} 95.03
d2i5fa1104 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 94.99
d2coda1102 Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 94.97
d1faoa_100 Dual adaptor of phosphotyrosine and 3-phosphoinosi 94.43
d2elba2101 DCC-interacting protein 13-alpha, APPL1 {Human (Ho 94.31
d1omwa2119 G-protein coupled receptor kinase 2 (beta-adrenerg 94.12
d1v5ua_117 SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ 94.08
d1v89a_118 Rho-GTPase-activating protein 25 (KIAA0053) {Human 93.82
d1wg7a_150 Dedicator of cytokinesis protein 9, DOCK9 {Human ( 93.61
d1upqa_107 Phosphoinositol 3-phosphate binding protein-1, PEP 93.54
d1btka_169 Bruton's tyrosine kinase {Human (Homo sapiens) [Ta 92.95
d1u5da1106 Src kinase-associated phosphoprotein SKAP55 (SCAP1 92.87
d1wi1a_126 Calcium-dependent activator protein for secretion, 92.82
d1zc3b1109 Exocyst complex protein EXO84 {Rat (Rattus norvegi 92.51
d1plsa_113 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 92.39
d1v5ma_136 SH2 and PH domain-containing adapter protein APS { 90.82
d1dbha2133 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 90.35
d1ntya2121 Triple functional domain protein TRIO {Human (Homo 90.33
d1v5pa_126 Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} 90.28
d1qqga1103 Insulin receptor substrate 1, IRS-1 {Human (Homo s 88.59
d1u5ea1209 Src-associated adaptor protein Skap2 {Mouse (Mus m 88.44
d2dfka2162 Rho guanine nucleotide exchange factor 9, Collybis 87.93
d1v61a_132 Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [ 87.3
d2j59m1133 Rho GTPase-activating protein 21 {Human (Homo sapi 87.02
d1txda2114 Rho guanine nucleotide exchange factor 12 {Human ( 86.92
d1droa_122 beta-spectrin {Fruit fly (Drosophila melanogaster) 86.14
d1unqa_118 Rac-alpha serine/threonine kinase {Human (Homo sap 85.58
d2coca199 FYVE, RhoGEF and PH domain containing protein 3, F 85.29
d1wgqa_109 FYVE, RhoGEF and PH domain containing protein 6, F 85.28
d1x1fa1136 Signal-transducing adaptor protein 1, STAP-1 {Huma 84.98
d1fgya_127 Grp1 {Mouse (Mus musculus) [TaxId: 10090]} 83.0
d2fjla1101 Phosphoinositide phospholipase C, PLC-gamma-1 {Rat 82.37
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00023  Score=56.43  Aligned_cols=103  Identities=19%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             cccccccceeeeeccCCceeeEEEEEEeCCCcEEEEEeccc-cc----cccccccceeEEEeeecC--CCCCCCCCCCCC
Q 015176          296 LNLVSKGGELLKRTRKGALHWKQVSFNINSNLQVVAKLKSK-HM----AGAFTKKKKCIVSAVICD--IPRWPPRESEDD  368 (412)
Q Consensus       296 ~~~l~kg~eLlkrtrkG~lhwk~Vsvyin~~~qVilKmksk-hv----~Gafskkkk~vV~~V~~~--~pawpgr~~~~~  368 (412)
                      ...+.+|+.|+|.+++|.  +|.--+|++.+++.+- =++. .-    .|.|.-..   |..|...  .+.+  +.....
T Consensus         8 l~~l~~G~~l~K~~~~~~--~k~R~f~L~~d~~~i~-~~~~~~~~~~~~~~i~i~~---I~~V~~G~~s~~~--~~~~~~   79 (119)
T d1maia_           8 LQALLKGSQLLKVKSSSW--RRERFYKLQEDCKTIW-QESRKVMRSPESQLFSIED---IQEVRMGHRTEGL--EKFARD   79 (119)
T ss_dssp             HHHHHHCEEEEEESSSSC--EEEEEEEECTTSSEEE-ECCCCTTCCTTTTEEEGGG---EEEEEESSCSHHH--HHHCTT
T ss_pred             HHHHHcCCeEEEeCCCCC--CEEEEEEEcCCCCEEE-EeCCCCCCCccceEEEHHH---ceEEEcCCCCchh--hhcccC
Confidence            457889999999999884  3445578888888774 3332 11    12232221   3333321  1111  000111


Q ss_pred             CCceeEEEE--EecCeeEEEEeCCcchhhhHHHHHHHHHh
Q 015176          369 SEQRAYFGI--KTADRVIEFECRNKGDKQMWVEGIQHILN  406 (412)
Q Consensus       369 ~~~r~YFgL--kTa~g~vEfec~s~~~~q~W~~gI~~lL~  406 (412)
                      ..+.++|.|  +|....+.|.|.|..+++.|+.||++||+
T Consensus        80 ~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~~  119 (119)
T d1maia_          80 IPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIH  119 (119)
T ss_dssp             SCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CCcCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHhC
Confidence            234466754  68888999999999999999999999974
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure