Citrus Sinensis ID: 015201
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | 2.2.26 [Sep-21-2011] | |||||||
| Q93ZB6 | 418 | Uroporphyrinogen decarbox | yes | no | 0.948 | 0.933 | 0.783 | 0.0 | |
| Q9AXB0 | 402 | Uroporphyrinogen decarbox | yes | no | 0.909 | 0.930 | 0.712 | 1e-161 | |
| Q10LR9 | 390 | Uroporphyrinogen decarbox | no | no | 0.849 | 0.894 | 0.54 | 1e-113 | |
| B1XIF6 | 350 | Uroporphyrinogen decarbox | yes | no | 0.839 | 0.985 | 0.543 | 1e-113 | |
| B7KKW4 | 353 | Uroporphyrinogen decarbox | yes | no | 0.834 | 0.971 | 0.543 | 1e-113 | |
| A2C141 | 352 | Uroporphyrinogen decarbox | yes | no | 0.834 | 0.974 | 0.555 | 1e-113 | |
| Q46LW7 | 352 | Uroporphyrinogen decarbox | yes | no | 0.834 | 0.974 | 0.549 | 1e-113 | |
| Q3AYE3 | 352 | Uroporphyrinogen decarbox | yes | no | 0.832 | 0.971 | 0.565 | 1e-111 | |
| O22886 | 394 | Uroporphyrinogen decarbox | no | no | 0.839 | 0.875 | 0.534 | 1e-111 | |
| B1WVY1 | 354 | Uroporphyrinogen decarbox | yes | no | 0.836 | 0.971 | 0.533 | 1e-111 |
| >sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=At3g14930 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/393 (78%), Positives = 342/393 (87%), Gaps = 3/393 (0%)
Query: 14 SVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPPAW 73
S +GF SN + L KR +A RKF V+CSSSSS DPLLVKAAKG +SRPPAW
Sbjct: 21 SFPIGFGSNPINVGLVCYPKRYSIAARKFVVACSSSSS---DPLLVKAAKGQAISRPPAW 77
Query: 74 MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPA 133
MMRQAGRYMAVY+KLA+KHPSFRERSE TDLIV+ISLQPW+AF PDGVIIFSDILTPLPA
Sbjct: 78 MMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRPDGVIIFSDILTPLPA 137
Query: 134 FGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFV 193
FGVPFDIEEV+GPVIQSPIR+EE +K LH ID EKLQFVGDSLKILR+EVGEHAAVLGFV
Sbjct: 138 FGVPFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEKLQFVGDSLKILRREVGEHAAVLGFV 197
Query: 194 GAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253
GAPWTIATYIVEGGTTRTYT IK+MCHTAP VLR LLSHLT+AI +Y++YQVE GAHCIQ
Sbjct: 198 GAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALLSHLTKAITEYVVYQVEHGAHCIQ 257
Query: 254 IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313
IFDSWGGQL P MWE+WS+PYI EI+ V+ +CP+TPIV YINGNGG LERMKGTG DVI
Sbjct: 258 IFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYINGNGGLLERMKGTGADVI 317
Query: 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373
GLDWTVDMADGR+RLG+++SVQGNVDPA LFSPLPALT+EI+RVVKCAG +GHILNLGHG
Sbjct: 318 GLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGHG 377
Query: 374 VLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEE 406
VLVGTPEEAVAHFFE +++ Y QNHV E
Sbjct: 378 VLVGTPEEAVAHFFETARNLDYQTLFQNHVPAE 410
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7 |
| >sp|Q9AXB0|DCUP1_ORYSJ Uroporphyrinogen decarboxylase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0622300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/376 (71%), Positives = 316/376 (84%), Gaps = 2/376 (0%)
Query: 31 SSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHP-VSRPPAWMMRQAGRYMAVYRKLA 89
++ R++ + S +++SS+ +PLLV+AA+G + RPPAWMMRQAGRYMA Y+ LA
Sbjct: 22 TTHRRRSGLPAISASLATASSTE-EPLLVRAARGEDGLPRPPAWMMRQAGRYMAEYQALA 80
Query: 90 EKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQ 149
++HPSFRERSETT+LIV+I+LQPW AF PDGVI+FSDILTPLPA GVPFDI + +GPVIQ
Sbjct: 81 KRHPSFRERSETTELIVEITLQPWRAFAPDGVILFSDILTPLPAIGVPFDISDSKGPVIQ 140
Query: 150 SPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTT 209
SP+RSEE ++ L ID EKL+FVG+SLKILR E+ AA+LGFVGAPWTIATY+VEGG T
Sbjct: 141 SPVRSEEQVRELTPIDFEKLRFVGESLKILRTEIDGQAALLGFVGAPWTIATYVVEGGMT 200
Query: 210 RTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQ 269
TYT IKSMCHTAP+VLR LLSHL AI++YIIYQV SGA CIQIFDSWGGQLPPH+WEQ
Sbjct: 201 NTYTNIKSMCHTAPNVLRGLLSHLADAISEYIIYQVNSGAQCIQIFDSWGGQLPPHVWEQ 260
Query: 270 WSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLG 329
WS+PYI++IV+ ++ +CP P+VLYINGNGG LERM TGVDVIGLDWTVDMADGR+RLG
Sbjct: 261 WSKPYIKQIVNKIKIECPNVPLVLYINGNGGLLERMTDTGVDVIGLDWTVDMADGRRRLG 320
Query: 330 NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389
N ISVQGNVDPA LFSPLP LTDEI RVVK AG +GHILNLGHGVLV TPEEAVAHFF+V
Sbjct: 321 NKISVQGNVDPAFLFSPLPVLTDEIHRVVKSAGPKGHILNLGHGVLVKTPEEAVAHFFDV 380
Query: 390 GKSMKYDNSSQNHVFE 405
+S++YD Q V E
Sbjct: 381 TRSLRYDTLFQGCVTE 396
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q10LR9|DCUP2_ORYSJ Uroporphyrinogen decarboxylase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0337600 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/350 (54%), Positives = 256/350 (73%), Gaps = 1/350 (0%)
Query: 47 SSSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIV 106
+++ ++ +PLLV A KG V RPP W+MRQAGRYM Y+ L E+HPSFRERSE DL+V
Sbjct: 41 TAAVGTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVV 100
Query: 107 QISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHH-ID 165
+ISLQPW+ F PDGVI+FSDILTPLP +PFDI + +GPVI P+R+ + + +
Sbjct: 101 EISLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVP 160
Query: 166 LEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHV 225
E + +VG +L ILR+EV AAVLGFVGAP+T+A+Y VEGG+++ ++ IK M + P +
Sbjct: 161 EEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEPEI 220
Query: 226 LRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK 285
L LL T ++A+YI YQ ++GA +QIFDSW +L P +E++S PY+++IV V+
Sbjct: 221 LHNLLQKFTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKET 280
Query: 286 CPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFS 345
PE P++LY +G+GG LER+ TGVDV+ LDWTVDMA+GRKRLG++I+VQGNVDP LF
Sbjct: 281 HPELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFG 340
Query: 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
++ I V+ AG+ GH+LNLGHG+ VGTPEE VAHFFEV K ++Y
Sbjct: 341 SKEFISKRIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 390
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Oryza sativa subsp. japonica (taxid: 39947) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B1XIF6|DCUP_SYNP2 Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/346 (54%), Positives = 248/346 (71%), Gaps = 1/346 (0%)
Query: 50 SSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQIS 109
S S++ PLL++AA+G V R P WMMRQAGRYM +YR L EK+PSFRERSE DL ++IS
Sbjct: 2 SESNNTPLLLRAARGEKVERTPVWMMRQAGRYMKIYRDLREKYPSFRERSENPDLAIEIS 61
Query: 110 LQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHID-LEK 168
LQPW AF PDGVI+FSDILTPLP G+PFDI E +GP+I++PIR++ + A+ D E
Sbjct: 62 LQPWHAFQPDGVIMFSDILTPLPGMGIPFDIIESKGPIIENPIRTQAQVDAMTPFDPAES 121
Query: 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRT 228
L F+ L LR+EVG + VLGFVGAPWT+A Y +EG +++ Y IK+M + P VL +
Sbjct: 122 LPFIKTILGTLRQEVGNASTVLGFVGAPWTLAAYAIEGKSSKNYAIIKNMAFSEPAVLHS 181
Query: 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE 288
L + AIADY+ YQ+E GA IQ+FDSW GQL P ++ ++ PY + +V V+ K P+
Sbjct: 182 FLGKIADAIADYVCYQIECGAQVIQMFDSWAGQLSPQDYDMFALPYQKRVVDKVKAKYPD 241
Query: 289 TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLP 348
P++LYI+G+ G LERM +GVD++ +DWTVDMAD R+RLG D+ VQGN+DP LF
Sbjct: 242 FPLILYISGSAGVLERMGKSGVDIVSVDWTVDMADARQRLGKDMKVQGNIDPGVLFGSQD 301
Query: 349 ALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394
+ I V+ AG+ GHILNLGHGVLVGTPE+ V FFE K+++
Sbjct: 302 FIKARIIDTVRKAGNWGHILNLGHGVLVGTPEDNVRFFFETCKNVQ 347
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B7KKW4|DCUP_CYAP7 Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain PCC 7424) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/344 (54%), Positives = 250/344 (72%), Gaps = 1/344 (0%)
Query: 50 SSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQIS 109
S S+ P L++AA+G + RPP WMMRQAGRYM VYR L +K+PSFRERSE DL ++IS
Sbjct: 2 SQSAEIPYLLRAARGEVLDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENADLAIEIS 61
Query: 110 LQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK- 168
LQPW AF PDGVI+FSDILTPLP G+PFDI E +GP+I PIR+++ + LH D ++
Sbjct: 62 LQPWRAFQPDGVIMFSDILTPLPGIGIPFDIIESKGPIIDPPIRTQQQIDHLHPFDPDQT 121
Query: 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRT 228
+ FV LK LR+EVG + VLGFVGAPWT+A Y VEG +++TY+ IKSM + P +L
Sbjct: 122 VPFVKTILKTLRQEVGNQSTVLGFVGAPWTLAAYAVEGKSSKTYSIIKSMAFSEPAILHQ 181
Query: 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE 288
LLS L +A Y+ YQ++ GA +Q+FDSW GQL P ++ ++ PY +++V V+ P+
Sbjct: 182 LLSKLADMVASYVRYQIDCGAQVVQMFDSWAGQLTPQDYDVFALPYQQQVVRQVKETHPD 241
Query: 289 TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLP 348
TP++LYI+G+ G LERM +GVD+I +DWTVDMA+ R+RLG ++ VQGN+DP LF
Sbjct: 242 TPLILYISGSAGVLERMGKSGVDMISVDWTVDMAEARQRLGKEMKVQGNIDPGVLFGSQS 301
Query: 349 ALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392
+ D I ++ AG++GHILNLGHGVLVGTPE+ V FFE K+
Sbjct: 302 FIRDRIVDTIRKAGNQGHILNLGHGVLVGTPEDNVRFFFETAKN 345
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Cyanothece sp. (strain PCC 7424) (taxid: 65393) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|A2C141|DCUP_PROM1 Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain NATL1A) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/344 (55%), Positives = 249/344 (72%), Gaps = 1/344 (0%)
Query: 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQ 111
+ + PLL++AA+G V RPP WMMRQAGRYM VYR L + HPSFRERSE DL +IS+Q
Sbjct: 2 NETTPLLLRAARGEHVERPPVWMMRQAGRYMKVYRDLRDNHPSFRERSENPDLSYEISMQ 61
Query: 112 PWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQ 170
P+ AF PDGVI+FSDILTPLP G+ FDI E +GP+I PIRS + +K L + E+ +
Sbjct: 62 PFTAFQPDGVILFSDILTPLPGMGINFDIVESKGPLINDPIRSLKQVKDLKPLQPEESMS 121
Query: 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLL 230
FVG+ L LR+ VG AAVLGFVGAPWT+A Y+VEG +++ Y IK+M P +L LL
Sbjct: 122 FVGEVLGRLRESVGNKAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEPELLHQLL 181
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290
+H ++IA+Y+ YQ++SGA +Q+FDSW GQL P +++++ PY +++V+LV+ K P+TP
Sbjct: 182 NHFAESIANYLSYQIQSGAQVVQMFDSWAGQLSPQDYDEFAAPYQQKVVNLVKEKHPDTP 241
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++LYI+G+ G LERM TGVD++ LDWTVDMADG KRL + VQGNVDP LF A+
Sbjct: 242 MILYISGSAGVLERMGQTGVDIVSLDWTVDMADGLKRLPQSVGVQGNVDPGLLFGTPDAI 301
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394
I VVK A R HILNLGHG+L GTPEE FFE GK++
Sbjct: 302 RSRIVDVVKKAKGRKHILNLGHGILPGTPEENARVFFEAGKNVN 345
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Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Prochlorococcus marinus (strain NATL1A) (taxid: 167555) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q46LW7|DCUP_PROMT Uroporphyrinogen decarboxylase OS=Prochlorococcus marinus (strain NATL2A) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/344 (54%), Positives = 250/344 (72%), Gaps = 1/344 (0%)
Query: 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQ 111
+ + PLL++AA+G V RPP WMMRQAGRYM VYR L + HPSFRERSE DL +IS+Q
Sbjct: 2 NETTPLLLRAARGENVERPPVWMMRQAGRYMKVYRDLRDNHPSFRERSENPDLSYEISMQ 61
Query: 112 PWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQ 170
P++AF PDGVI+FSDILTPLP G+ FDI E +GP+I PIRS + +K L + E+ +
Sbjct: 62 PFKAFQPDGVILFSDILTPLPGMGINFDIVESKGPLINDPIRSLKQVKDLKPLQPEESMS 121
Query: 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLL 230
FVG+ L LR+ VG AAVLGFVGAPWT+A Y+VEG +++ Y IK+M P +L LL
Sbjct: 122 FVGEVLGRLRESVGNKAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFQEPELLHQLL 181
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290
+H ++IA+Y+ YQ++SGA +Q+FDSW GQL P +++++ PY +++V+LV+ K P+TP
Sbjct: 182 NHFAESIANYLSYQIQSGAQVVQMFDSWAGQLSPQDYDEFAAPYQQKVVNLVKEKHPDTP 241
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
++LYI+G+ G +ERM TGVD++ LDWTVDMADG KRL + VQGNVDP LF A+
Sbjct: 242 MILYISGSAGVIERMGQTGVDIVSLDWTVDMADGLKRLPQAVGVQGNVDPGLLFGTPDAI 301
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394
I VV+ A R HILNLGHG+L GTPEE FFE GK++
Sbjct: 302 RSRIVDVVRKAKGRKHILNLGHGILPGTPEENARVFFEAGKNVN 345
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Prochlorococcus marinus (strain NATL2A) (taxid: 59920) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|Q3AYE3|DCUP_SYNS9 Uroporphyrinogen decarboxylase OS=Synechococcus sp. (strain CC9902) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/343 (56%), Positives = 245/343 (71%), Gaps = 1/343 (0%)
Query: 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQ 111
S + PLL++AA+G V RPP WMMRQAGRYM +YR L +K+PSFRERSE DL +IS+Q
Sbjct: 2 SDTLPLLLRAARGESVERPPVWMMRQAGRYMKIYRDLRDKYPSFRERSENPDLSYEISMQ 61
Query: 112 PWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHID-LEKLQ 170
P+EAF PDGVI+FSDILTPLP G+ FDI E +GP I PIRS E +KAL ++ E +
Sbjct: 62 PFEAFQPDGVILFSDILTPLPGMGIDFDIIESKGPQIGDPIRSMEQVKALRPLNPAESMP 121
Query: 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLL 230
FVG+ L LRK VG AAVLGFVGAPWT+A Y+VEG +++ Y IK+M P +L TLL
Sbjct: 122 FVGEVLGRLRKTVGNQAAVLGFVGAPWTLAAYVVEGKSSKNYAVIKAMAFREPELLHTLL 181
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290
+H ++IA+Y+ YQ++SGA +Q+FDSW GQL P ++ ++ PY +++V LV+ P+TP
Sbjct: 182 NHFAESIANYLRYQIDSGAQVVQMFDSWAGQLSPADYDTFAAPYQKKVVDLVKQTHPDTP 241
Query: 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
VLYI+G+ G LERM TGVD+I LDWTVDMA+ RL I VQGNVDP LF A+
Sbjct: 242 FVLYISGSAGVLERMARTGVDIISLDWTVDMAEACARLPEHIGVQGNVDPGLLFGTPDAI 301
Query: 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393
I V+ A R HILNLGHG+L GTPEE A FF GKS+
Sbjct: 302 QARIDDTVRKARGRRHILNLGHGILPGTPEENGAAFFRSGKSV 344
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Synechococcus sp. (strain CC9902) (taxid: 316279) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|O22886|DCUP2_ARATH Uroporphyrinogen decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=At2g40490 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/346 (53%), Positives = 249/346 (71%), Gaps = 1/346 (0%)
Query: 51 SSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISL 110
S++S+PLL++A KG V RPP W+MRQAGRYM Y+ L EK+PSFR+RSE DL+V+ISL
Sbjct: 49 SATSEPLLLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISL 108
Query: 111 QPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHH-IDLEKL 169
QPW+ F PDGVI+FSDILTPL +PFDI + +GP+I +P +S + + + E +
Sbjct: 109 QPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESV 168
Query: 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTL 229
+VG++L+ LR EV AAVLGFVGAP+T+++Y++EGG+++ +T IK + + P VL L
Sbjct: 169 PYVGEALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQPKVLHAL 228
Query: 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET 289
L T ++ YI YQ +SGA +QIFDSW +L P +E++S PY+++IV V+ P
Sbjct: 229 LQKFTTSMITYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVEAVKQTHPNL 288
Query: 290 PIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPA 349
P++LY +G+GG LER+ TGVDV+ LDWTVDMA+GR RLG DI+VQGNVDP LF
Sbjct: 289 PLILYASGSGGLLERLARTGVDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEF 348
Query: 350 LTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
+T I VK AG HILNLGHG+ VGTPEE VAHFFEV + ++Y
Sbjct: 349 ITSRIHDTVKKAGRDKHILNLGHGIKVGTPEENVAHFFEVAQEIRY 394
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
| >sp|B1WVY1|DCUP_CYAA5 Uroporphyrinogen decarboxylase OS=Cyanothece sp. (strain ATCC 51142) GN=hemE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/345 (53%), Positives = 246/345 (71%), Gaps = 1/345 (0%)
Query: 50 SSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQIS 109
+ ++ P L++AA+G + RPP WMMRQAGRYM VYR L +K+PSFRERSE DL ++IS
Sbjct: 2 TGANDTPYLLRAARGEILDRPPVWMMRQAGRYMKVYRDLRDKYPSFRERSENPDLAIEIS 61
Query: 110 LQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK- 168
LQPW AF PDGVI+FSDILTPLP G+PFDI E +GPVI PIR++E + L +D E+
Sbjct: 62 LQPWRAFQPDGVIMFSDILTPLPGMGIPFDIVESKGPVIDPPIRTKEQVDNLRPLDPEES 121
Query: 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRT 228
L F+ L+ LR+EVG + VLGFVG+PWT+A Y +EG +++ Y IKSM + P +L +
Sbjct: 122 LPFIKTILQSLRQEVGNQSTVLGFVGSPWTLAAYAIEGKSSKNYAIIKSMAFSQPEILHS 181
Query: 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE 288
LS + AIA Y+ YQ++ GA +Q+FDSW GQL P +E ++ PY +++V V+ P+
Sbjct: 182 FLSKIADAIAIYVRYQIDCGAQVVQLFDSWAGQLSPQDYETFALPYQQQVVRQVKETHPD 241
Query: 289 TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLP 348
TP++LYI+G+ G LERM +GVD++ +DWTVDMA+ R+RLG D+ VQGN+DP LF
Sbjct: 242 TPLILYISGSAGVLERMGQSGVDIVSVDWTVDMAEARQRLGRDMKVQGNIDPGVLFGSQD 301
Query: 349 ALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393
+ I V+ AG GHILNLGHGVLVGTPE+ V FFE K +
Sbjct: 302 FIKARILDTVRKAGRGGHILNLGHGVLVGTPEDNVRCFFETAKQV 346
|
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| 255568118 | 429 | uroporphyrinogen decarboxylase, putative | 0.956 | 0.916 | 0.792 | 0.0 | |
| 356544092 | 410 | PREDICTED: uroporphyrinogen decarboxylas | 0.995 | 0.997 | 0.785 | 0.0 | |
| 297830042 | 418 | hypothetical protein ARALYDRAFT_478916 [ | 0.941 | 0.925 | 0.794 | 0.0 | |
| 302142896 | 1560 | unnamed protein product [Vitis vinifera] | 0.978 | 0.257 | 0.775 | 0.0 | |
| 224117002 | 357 | predicted protein [Populus trichocarpa] | 0.868 | 1.0 | 0.874 | 0.0 | |
| 388508040 | 407 | unknown [Lotus japonicus] | 0.958 | 0.968 | 0.772 | 0.0 | |
| 225461671 | 409 | PREDICTED: uroporphyrinogen decarboxylas | 0.978 | 0.982 | 0.775 | 0.0 | |
| 18400577 | 418 | uroporphyrinogen decarboxylase 1 [Arabid | 0.948 | 0.933 | 0.783 | 0.0 | |
| 16323119 | 418 | AT3g14930/K15M2_7 [Arabidopsis thaliana] | 0.948 | 0.933 | 0.783 | 0.0 | |
| 449483285 | 466 | PREDICTED: uroporphyrinogen decarboxylas | 0.909 | 0.802 | 0.816 | 0.0 |
| >gi|255568118|ref|XP_002525035.1| uroporphyrinogen decarboxylase, putative [Ricinus communis] gi|223535697|gb|EEF37362.1| uroporphyrinogen decarboxylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/400 (79%), Positives = 351/400 (87%), Gaps = 7/400 (1%)
Query: 12 SSSVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPP 71
+ +++GF + T +L PS KLA R + C + ++ DPLLVKAA+G PVSRPP
Sbjct: 37 AKCLKVGFAAT--TRSLTPS----KLA-RSGRIVCQAQDAAVEDPLLVKAARGEPVSRPP 89
Query: 72 AWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131
AWMMRQAGRYMAVYRK+AEK+PSFRERSETTDLIV+ISLQPWEAFHPDGVIIFSDILTPL
Sbjct: 90 AWMMRQAGRYMAVYRKVAEKYPSFRERSETTDLIVEISLQPWEAFHPDGVIIFSDILTPL 149
Query: 132 PAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLG 191
PAFGVPFDIEEVRGPVIQ+PI SEEGLKALH I+LEKL FVGDSL+ILR+EV AAVLG
Sbjct: 150 PAFGVPFDIEEVRGPVIQTPICSEEGLKALHPIELEKLHFVGDSLRILRREVDGRAAVLG 209
Query: 192 FVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251
FVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLR LLSHLTQAI++YI++QVESGA C
Sbjct: 210 FVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRALLSHLTQAISEYIVFQVESGAQC 269
Query: 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVD 311
IQIFDSWGGQLPP MW+ WS+PYI E+V VR+KCPE P+VLYINGNGG LERMKGTGVD
Sbjct: 270 IQIFDSWGGQLPPEMWDCWSKPYIEEVVRKVRSKCPEIPLVLYINGNGGLLERMKGTGVD 329
Query: 312 VIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371
VIGLDWTVDMADGRKRLG+ ISVQGNVDPA LFSPL ALTDEIQRVV+CAG +GHILNLG
Sbjct: 330 VIGLDWTVDMADGRKRLGSGISVQGNVDPAYLFSPLSALTDEIQRVVRCAGPKGHILNLG 389
Query: 372 HGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLVV 411
HGVLVGTPEEAVAHFFEV +S+KY+ QN V EE +LVV
Sbjct: 390 HGVLVGTPEEAVAHFFEVARSLKYNTPLQNQVAEEPELVV 429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544092|ref|XP_003540489.1| PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/410 (78%), Positives = 354/410 (86%), Gaps = 1/410 (0%)
Query: 1 MSFSSLTSALGSSSVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVK 60
M+ S +SALG L SN P K K KF+++CS++SSSS DPLLVK
Sbjct: 1 MATSINSSALGWKHSSLFVQSNNGFNVASPPFKHKPPRSSKFSLTCSAASSSS-DPLLVK 59
Query: 61 AAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDG 120
AA+G PVSRPPAWMMRQAGRYMAVY+KLAEK+PSFRERSETTDLIV+ISLQPW AF PDG
Sbjct: 60 AARGDPVSRPPAWMMRQAGRYMAVYKKLAEKYPSFRERSETTDLIVEISLQPWNAFRPDG 119
Query: 121 VIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILR 180
VIIFSDILTPLPAFGV FDIEEVRGPVI SPIRSEEGLK LH IDL++L+FVGDSLKILR
Sbjct: 120 VIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIRSEEGLKVLHPIDLDRLKFVGDSLKILR 179
Query: 181 KEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADY 240
+EVG HAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADY
Sbjct: 180 QEVGGHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADY 239
Query: 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG 300
+I+QVESGAHCIQIFDSWGGQLPP MWE+WS+PYI+EIV+LV+ KCP PIVLYINGNGG
Sbjct: 240 VIFQVESGAHCIQIFDSWGGQLPPEMWERWSKPYIKEIVNLVKKKCPGVPIVLYINGNGG 299
Query: 301 FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKC 360
LERMK TGVDVIGLDWTVDMADGR+RLG+ I VQGNVDPA LFSPL ALT+EIQRVV+C
Sbjct: 300 LLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLDALTEEIQRVVRC 359
Query: 361 AGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLV 410
AG R HILNLGHGVLVGTPEEAVAHFFEV +S+++D QN+ + LV
Sbjct: 360 AGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFDTLFQNNTAKGPNLV 409
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830042|ref|XP_002882903.1| hypothetical protein ARALYDRAFT_478916 [Arabidopsis lyrata subsp. lyrata] gi|297328743|gb|EFH59162.1| hypothetical protein ARALYDRAFT_478916 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/390 (79%), Positives = 343/390 (87%), Gaps = 3/390 (0%)
Query: 14 SVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPPAW 73
S+ +GF SN + L KR +A RKF V+CSSSSS DPLLVKAAKG VSRPPAW
Sbjct: 21 SLPIGFRSNPINVGLVCYPKRHNIAARKFVVACSSSSS---DPLLVKAAKGQSVSRPPAW 77
Query: 74 MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPA 133
MMRQAGRYMAVY+KLA+KHPSFRERSE TDLIV+ISLQPW+AF PDGVIIFSDILTPLPA
Sbjct: 78 MMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRPDGVIIFSDILTPLPA 137
Query: 134 FGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFV 193
FGVPFDIEEV+GPVIQSPIR+EE LK LH ID EKLQFVGDSLKILR+EVGEHAAVLGFV
Sbjct: 138 FGVPFDIEEVKGPVIQSPIRTEEDLKRLHAIDFEKLQFVGDSLKILRREVGEHAAVLGFV 197
Query: 194 GAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253
GAPWTIATYIVEGGTTRTYT IK+MCHTAP+VLR LLSHLT+AI +Y++YQVE GAHCIQ
Sbjct: 198 GAPWTIATYIVEGGTTRTYTVIKNMCHTAPNVLRALLSHLTKAITEYVVYQVEHGAHCIQ 257
Query: 254 IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313
IFDSWGGQL P MWE+WS+PYI EI+ V+ +CP+TPIV YINGNGG LERMKGTG DVI
Sbjct: 258 IFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYINGNGGLLERMKGTGADVI 317
Query: 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373
GLDWTVDMADGR+RLG+++SVQGNVDPA LFSPLPALT+EI+RVVKCAG +GHILNLGHG
Sbjct: 318 GLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGHG 377
Query: 374 VLVGTPEEAVAHFFEVGKSMKYDNSSQNHV 403
VLVGTPEEAVAHFFE ++M Y QNHV
Sbjct: 378 VLVGTPEEAVAHFFETARNMDYQTLFQNHV 407
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142896|emb|CBI20191.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/418 (77%), Positives = 356/418 (85%), Gaps = 16/418 (3%)
Query: 1 MSFSSLTS---ALG---SSSVQLGF-HSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSS 53
MS SS TS LG SSSVQLGF + F + P+ ++F CSSS S
Sbjct: 1152 MSLSSPTSMCCCLGWSSSSSVQLGFLPARFFRVSSRPT--------KRFHFKCSSSVPDS 1203
Query: 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPW 113
DPLLVKAA+G PV+RPPAWMMRQAGRYMAVYRKLAEK+PSFR+RSETTDLIV+ISLQPW
Sbjct: 1204 -DPLLVKAARGDPVTRPPAWMMRQAGRYMAVYRKLAEKYPSFRQRSETTDLIVEISLQPW 1262
Query: 114 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVG 173
EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVI SPIRSEEGLK LH IDL+KL FVG
Sbjct: 1263 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIHSPIRSEEGLKVLHPIDLKKLHFVG 1322
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
+SL+ILR+EVG AAVLGFVGAPWTI TYIVEGGTTRTYT IKSMCHTAP+VLR LLSHL
Sbjct: 1323 ESLRILRQEVGGQAAVLGFVGAPWTIGTYIVEGGTTRTYTIIKSMCHTAPNVLRALLSHL 1382
Query: 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293
TQAI++YI++QVESGAHCIQIFDSWGGQLPP MWE WS+PYI E+VS+VR +CP TPIVL
Sbjct: 1383 TQAISEYIVFQVESGAHCIQIFDSWGGQLPPDMWECWSKPYIEEMVSVVRKRCPGTPIVL 1442
Query: 294 YINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353
YINGNGG LERMKGTGVDVIGLDWTVDMADGRKRLG+ IS+QGNVDPA LFSPLPALTDE
Sbjct: 1443 YINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGSGISIQGNVDPAYLFSPLPALTDE 1502
Query: 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLVV 411
IQRVV+CAG RGHILNLGHGVLVGTPEEAVAHFFEV +++ +++ EE KL V
Sbjct: 1503 IQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARNLNLSTLLEDNAVEEPKLAV 1560
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117002|ref|XP_002331805.1| predicted protein [Populus trichocarpa] gi|222874501|gb|EEF11632.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/358 (87%), Positives = 334/358 (93%), Gaps = 1/358 (0%)
Query: 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPW 113
SDPLLVKAAKG PVSRPPAWMMRQAGRYMAVYRKLAEK+PSFRERSETTDLIV+ISLQPW
Sbjct: 1 SDPLLVKAAKGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPW 60
Query: 114 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVG 173
EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALH I+LEKLQF+G
Sbjct: 61 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHPIELEKLQFLG 120
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
DSL+ILR EV AAVLGFVGAPWTIATYIVEGGTTRTYT IKSMCHTAP VLR LLSHL
Sbjct: 121 DSLRILRNEVEGRAAVLGFVGAPWTIATYIVEGGTTRTYTNIKSMCHTAPQVLRALLSHL 180
Query: 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293
T+AI+DYI++QVESGAHCIQIFDSWGGQLPP MW++WS+PYI EIVS VR KCPETP+VL
Sbjct: 181 TKAISDYIVFQVESGAHCIQIFDSWGGQLPPDMWDRWSKPYIEEIVSTVRNKCPETPLVL 240
Query: 294 YINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353
YINGNGG LERMKGTGVDVIGLDWTVD+ADGRKRLG+ ISVQGNVDPA LFSPLPALTDE
Sbjct: 241 YINGNGGLLERMKGTGVDVIGLDWTVDLADGRKRLGSGISVQGNVDPAYLFSPLPALTDE 300
Query: 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLVV 411
IQRVV+CAG RGHILNLGHGVLVGTPEEAVAHFFEV +S+++ + Q HV EE KLVV
Sbjct: 301 IQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSLEF-TTPQGHVVEEPKLVV 357
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508040|gb|AFK42086.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/405 (77%), Positives = 352/405 (86%), Gaps = 11/405 (2%)
Query: 7 TSALGSSSVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHP 66
+S+L + S GF N ++ + P K F+++CS++SSSS DPLLVKA +G P
Sbjct: 14 SSSLFAHSTSTGF--NLISPSFKPKPK--------FSLTCSAASSSS-DPLLVKATRGDP 62
Query: 67 VSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSD 126
SRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIV+ISLQPW+AF PDGVIIFSD
Sbjct: 63 ASRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSD 122
Query: 127 ILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEH 186
ILTPLPAFG+ FDIE+VRGPVIQSPIRSEEGLKALH IDL++L+FVGDSLK+LR+EVG H
Sbjct: 123 ILTPLPAFGIEFDIEDVRGPVIQSPIRSEEGLKALHSIDLDRLRFVGDSLKLLRQEVGGH 182
Query: 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVE 246
AAVLGFVGAPWT+ATYIVEGGTTR YTTIKSMCHTAP +LRTLLSHL+QAIADYI++QVE
Sbjct: 183 AAVLGFVGAPWTLATYIVEGGTTRAYTTIKSMCHTAPDILRTLLSHLSQAIADYIVFQVE 242
Query: 247 SGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMK 306
SGAHCIQIFDSWGGQLPP MWE WS+PYI EIV +V+ KCPETPIVLYINGNGG LERM
Sbjct: 243 SGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMV 302
Query: 307 GTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGH 366
TGVDVIGLDWTVDMADGR+RLG+ I VQGNVDPA LFSPL +LT+EIQRVVKCAG RGH
Sbjct: 303 DTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGH 362
Query: 367 ILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLVV 411
ILNLGHGVLVGTPEEAVAHFFEV +S+K+D QN + +LV+
Sbjct: 363 ILNLGHGVLVGTPEEAVAHFFEVARSLKFDTHFQNTTANDPELVI 407
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461671|ref|XP_002285451.1| PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/418 (77%), Positives = 356/418 (85%), Gaps = 16/418 (3%)
Query: 1 MSFSSLTS---ALG---SSSVQLGF-HSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSS 53
MS SS TS LG SSSVQLGF + F + P+ ++F CSSS S
Sbjct: 1 MSLSSPTSMCCCLGWSSSSSVQLGFLPARFFRVSSRPT--------KRFHFKCSSSVPDS 52
Query: 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPW 113
DPLLVKAA+G PV+RPPAWMMRQAGRYMAVYRKLAEK+PSFR+RSETTDLIV+ISLQPW
Sbjct: 53 -DPLLVKAARGDPVTRPPAWMMRQAGRYMAVYRKLAEKYPSFRQRSETTDLIVEISLQPW 111
Query: 114 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVG 173
EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVI SPIRSEEGLK LH IDL+KL FVG
Sbjct: 112 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIHSPIRSEEGLKVLHPIDLKKLHFVG 171
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
+SL+ILR+EVG AAVLGFVGAPWTI TYIVEGGTTRTYT IKSMCHTAP+VLR LLSHL
Sbjct: 172 ESLRILRQEVGGQAAVLGFVGAPWTIGTYIVEGGTTRTYTIIKSMCHTAPNVLRALLSHL 231
Query: 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293
TQAI++YI++QVESGAHCIQIFDSWGGQLPP MWE WS+PYI E+VS+VR +CP TPIVL
Sbjct: 232 TQAISEYIVFQVESGAHCIQIFDSWGGQLPPDMWECWSKPYIEEMVSVVRKRCPGTPIVL 291
Query: 294 YINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353
YINGNGG LERMKGTGVDVIGLDWTVDMADGRKRLG+ IS+QGNVDPA LFSPLPALTDE
Sbjct: 292 YINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGSGISIQGNVDPAYLFSPLPALTDE 351
Query: 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESKLVV 411
IQRVV+CAG RGHILNLGHGVLVGTPEEAVAHFFEV +++ +++ EE KL V
Sbjct: 352 IQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARNLNLSTLLEDNAVEEPKLAV 409
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18400577|ref|NP_566495.1| uroporphyrinogen decarboxylase 1 [Arabidopsis thaliana] gi|30683381|ref|NP_850587.1| uroporphyrinogen decarboxylase 1 [Arabidopsis thaliana] gi|238064978|sp|Q93ZB6.2|DCUP1_ARATH RecName: Full=Uroporphyrinogen decarboxylase 1, chloroplastic; Short=UPD1; Short=URO-D1; Flags: Precursor gi|332642068|gb|AEE75589.1| uroporphyrinogen decarboxylase 1 [Arabidopsis thaliana] gi|332642069|gb|AEE75590.1| uroporphyrinogen decarboxylase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/393 (78%), Positives = 342/393 (87%), Gaps = 3/393 (0%)
Query: 14 SVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPPAW 73
S +GF SN + L KR +A RKF V+CSSSSS DPLLVKAAKG +SRPPAW
Sbjct: 21 SFPIGFGSNPINVGLVCYPKRYSIAARKFVVACSSSSS---DPLLVKAAKGQAISRPPAW 77
Query: 74 MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPA 133
MMRQAGRYMAVY+KLA+KHPSFRERSE TDLIV+ISLQPW+AF PDGVIIFSDILTPLPA
Sbjct: 78 MMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRPDGVIIFSDILTPLPA 137
Query: 134 FGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFV 193
FGVPFDIEEV+GPVIQSPIR+EE +K LH ID EKLQFVGDSLKILR+EVGEHAAVLGFV
Sbjct: 138 FGVPFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEKLQFVGDSLKILRREVGEHAAVLGFV 197
Query: 194 GAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253
GAPWTIATYIVEGGTTRTYT IK+MCHTAP VLR LLSHLT+AI +Y++YQVE GAHCIQ
Sbjct: 198 GAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALLSHLTKAITEYVVYQVEHGAHCIQ 257
Query: 254 IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313
IFDSWGGQL P MWE+WS+PYI EI+ V+ +CP+TPIV YINGNGG LERMKGTG DVI
Sbjct: 258 IFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYINGNGGLLERMKGTGADVI 317
Query: 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373
GLDWTVDMADGR+RLG+++SVQGNVDPA LFSPLPALT+EI+RVVKCAG +GHILNLGHG
Sbjct: 318 GLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGHG 377
Query: 374 VLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEE 406
VLVGTPEEAVAHFFE +++ Y QNHV E
Sbjct: 378 VLVGTPEEAVAHFFETARNLDYQTLFQNHVPAE 410
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16323119|gb|AAL15294.1| AT3g14930/K15M2_7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/393 (78%), Positives = 342/393 (87%), Gaps = 3/393 (0%)
Query: 14 SVQLGFHSNFLTEALHPSSKRKKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPPAW 73
S +GF SN + L KR +A RKF V+CSSSSS DPLLVKAAKG +SRPPAW
Sbjct: 21 SFPIGFGSNPINVGLGCYPKRYSIAARKFVVACSSSSS---DPLLVKAAKGQAISRPPAW 77
Query: 74 MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPA 133
MMRQAGRYMAVY+KLA+KHPSFRERSE TDLIV+ISLQPW+AF PDGVIIFSDILTPLPA
Sbjct: 78 MMRQAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRPDGVIIFSDILTPLPA 137
Query: 134 FGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFV 193
FGVPFDIEEV+GPVIQSPIR+EE +K LH ID EKLQFVGDSLKILR+EVGEHAAVLGFV
Sbjct: 138 FGVPFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEKLQFVGDSLKILRREVGEHAAVLGFV 197
Query: 194 GAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253
GAPWTIATYIVEGGTTRTYT IK+MCHTAP VLR LLSHLT+AI +Y++YQVE GAHCIQ
Sbjct: 198 GAPWTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALLSHLTKAITEYVVYQVEHGAHCIQ 257
Query: 254 IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313
IFDSWGGQL P MWE+WS+PYI EI+ V+ +CP+TPIV YINGNGG LERMKGTG DVI
Sbjct: 258 IFDSWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYINGNGGLLERMKGTGADVI 317
Query: 314 GLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373
GLDWTVDMADGR+RLG+++SVQGNVDPA LFSPLPALT+EI+RVVKCAG +GHILNLGHG
Sbjct: 318 GLDWTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGHG 377
Query: 374 VLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEE 406
VLVGTPEEAVAHFFE +++ Y QNHV E
Sbjct: 378 VLVGTPEEAVAHFFETARNLDYQTLFQNHVPAE 410
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483285|ref|XP_004156545.1| PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/376 (81%), Positives = 340/376 (90%), Gaps = 2/376 (0%)
Query: 35 KKLAFRKFTVSCSSSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPS 94
++++ + +V+CSSS S PLLVKAA+G PVSRPPAWMMRQAGRYMA+YRKLAEK+PS
Sbjct: 92 RRVSNKPISVTCSSSLSDP--PLLVKAARGDPVSRPPAWMMRQAGRYMAIYRKLAEKYPS 149
Query: 95 FRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRS 154
FRERSETTDLIV+ISLQPWEAFHPDGVIIFSDILTPLPA GVPFDIE++RGPVI SPIRS
Sbjct: 150 FRERSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPALGVPFDIEDIRGPVIHSPIRS 209
Query: 155 EEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTT 214
EEGLKALH IDL+KL FVG+SLK+LRKEV AAVLGFVGAPWTIATYIVEGGTTRTYTT
Sbjct: 210 EEGLKALHPIDLDKLNFVGESLKLLRKEVEGSAAVLGFVGAPWTIATYIVEGGTTRTYTT 269
Query: 215 IKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPY 274
IK MCHTAPHVL+TLLSHLTQAI++YIIYQ+E GAHCIQIFDSWGGQLPP MWE WS+PY
Sbjct: 270 IKRMCHTAPHVLKTLLSHLTQAISEYIIYQIEHGAHCIQIFDSWGGQLPPDMWESWSKPY 329
Query: 275 IREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISV 334
I++IVS VR KCPETP+VLYINGNGG LERMKGTGVDVIGLDWTVDMADGR RLG DISV
Sbjct: 330 IQKIVSTVRDKCPETPLVLYINGNGGLLERMKGTGVDVIGLDWTVDMADGRNRLGTDISV 389
Query: 335 QGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394
QGNVDPA LFS LPALT+EIQRVV+CAG RGHILNLGHGVLVGTPEEAVAHFF+V +S+
Sbjct: 390 QGNVDPAYLFSTLPALTEEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFDVARSLN 449
Query: 395 YDNSSQNHVFEESKLV 410
++ SQ+ +E KLV
Sbjct: 450 FNTLSQDLTAQEPKLV 465
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| TAIR|locus:2086300 | 418 | HEME1 [Arabidopsis thaliana (t | 0.934 | 0.918 | 0.775 | 7.9e-165 | |
| TAIR|locus:2061903 | 394 | HEME2 [Arabidopsis thaliana (t | 0.829 | 0.865 | 0.535 | 2.4e-99 | |
| TIGR_CMR|CBU_0275 | 361 | CBU_0275 "uroporphyrinogen dec | 0.824 | 0.939 | 0.373 | 1.4e-62 | |
| UNIPROTKB|Q9KV26 | 355 | hemE "Uroporphyrinogen decarbo | 0.802 | 0.929 | 0.364 | 6.2e-62 | |
| TIGR_CMR|VC_0332 | 355 | VC_0332 "uroporphyrinogen deca | 0.802 | 0.929 | 0.364 | 6.2e-62 | |
| TIGR_CMR|GSU_3453 | 340 | GSU_3453 "uroporphyrinogen dec | 0.785 | 0.95 | 0.384 | 2.1e-61 | |
| TIGR_CMR|SO_0435 | 354 | SO_0435 "uroporphyrinogen deca | 0.819 | 0.951 | 0.373 | 5e-60 | |
| UNIPROTKB|P29680 | 354 | hemE [Escherichia coli K-12 (t | 0.802 | 0.932 | 0.368 | 6.4e-60 | |
| TIGR_CMR|CPS_0448 | 355 | CPS_0448 "uroporphyrinogen dec | 0.802 | 0.929 | 0.349 | 6.4e-60 | |
| TIGR_CMR|CHY_0483 | 350 | CHY_0483 "uroporphyrinogen dec | 0.798 | 0.937 | 0.369 | 4e-58 |
| TAIR|locus:2086300 HEME1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1604 (569.7 bits), Expect = 7.9e-165, P = 7.9e-165
Identities = 300/387 (77%), Positives = 333/387 (86%)
Query: 17 LGFHSNFLTEALHPSSKRKKLAFRKFTVXXXXXXXXXXDPLLVKAAKGHPVSRPPAWMMR 76
+GF SN + L KR +A RKF V DPLLVKAAKG +SRPPAWMMR
Sbjct: 24 IGFGSNPINVGLVCYPKRYSIAARKFVVACSSSSS---DPLLVKAAKGQAISRPPAWMMR 80
Query: 77 QAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGV 136
QAGRYMAVY+KLA+KHPSFRERSE TDLIV+ISLQPW+AF PDGVIIFSDILTPLPAFGV
Sbjct: 81 QAGRYMAVYQKLAKKHPSFRERSENTDLIVEISLQPWQAFRPDGVIIFSDILTPLPAFGV 140
Query: 137 PFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAP 196
PFDIEEV+GPVIQSPIR+EE +K LH ID EKLQFVGDSLKILR+EVGEHAAVLGFVGAP
Sbjct: 141 PFDIEEVKGPVIQSPIRTEEDMKRLHPIDFEKLQFVGDSLKILRREVGEHAAVLGFVGAP 200
Query: 197 WTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFD 256
WTIATYIVEGGTTRTYT IK+MCHTAP VLR LLSHLT+AI +Y++YQVE GAHCIQIFD
Sbjct: 201 WTIATYIVEGGTTRTYTVIKNMCHTAPDVLRALLSHLTKAITEYVVYQVEHGAHCIQIFD 260
Query: 257 SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316
SWGGQL P MWE+WS+PYI EI+ V+ +CP+TPIV YINGNGG LERMKGTG DVIGLD
Sbjct: 261 SWGGQLTPEMWERWSKPYIEEIIHAVKKRCPDTPIVFYINGNGGLLERMKGTGADVIGLD 320
Query: 317 WTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV 376
WTVDMADGR+RLG+++SVQGNVDPA LFSPLPALT+EI+RVVKCAG +GHILNLGHGVLV
Sbjct: 321 WTVDMADGRRRLGSEVSVQGNVDPAYLFSPLPALTEEIERVVKCAGPKGHILNLGHGVLV 380
Query: 377 GTPEEAVAHFFEVGKSMKYDNSSQNHV 403
GTPEEAVAHFFE +++ Y QNHV
Sbjct: 381 GTPEEAVAHFFETARNLDYQTLFQNHV 407
|
|
| TAIR|locus:2061903 HEME2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 183/342 (53%), Positives = 245/342 (71%)
Query: 55 DPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWE 114
+PLL++A KG V RPP W+MRQAGRYM Y+ L EK+PSFR+RSE DL+V+ISLQPW+
Sbjct: 53 EPLLLRAVKGEVVDRPPVWLMRQAGRYMKSYQTLCEKYPSFRDRSENADLVVEISLQPWK 112
Query: 115 AFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHH-IDLEKLQFVG 173
F PDGVI+FSDILTPL +PFDI + +GP+I +P +S + + + E + +VG
Sbjct: 113 VFKPDGVILFSDILTPLSGMNIPFDIVKGKGPIIFNPPQSAADVAQVREFVPEESVPYVG 172
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
++L+ LR EV AAVLGFVGAP+T+++Y++EGG+++ +T IK + + P VL LL
Sbjct: 173 EALRRLRNEVNNEAAVLGFVGAPFTLSSYVIEGGSSKNFTQIKRLAFSQPKVLHALLQKF 232
Query: 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293
T ++ YI YQ +SGA +QIFDSW +L P +E++S PY+++IV V+ P P++L
Sbjct: 233 TTSMITYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVEAVKQTHPNLPLIL 292
Query: 294 YINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353
Y +G+GG LER+ TGVDV+ LDWTVDMA+GR RLG DI+VQGNVDP LF +T
Sbjct: 293 YASGSGGLLERLARTGVDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEFITSR 352
Query: 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
I VK AG HILNLGHG+ VGTPEE VAHFFEV + ++Y
Sbjct: 353 IHDTVKKAGRDKHILNLGHGIKVGTPEENVAHFFEVAQEIRY 394
|
|
| TIGR_CMR|CBU_0275 CBU_0275 "uroporphyrinogen decarboxylase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 128/343 (37%), Positives = 203/343 (59%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV R P W+MRQAGRY+ YR+L EK P+F +T +L + +LQP F
Sbjct: 10 IRALLRQPVDRTPVWIMRQAGRYLPEYRQLREKVPNFMAFCKTPELACEATLQPLRRFPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLK 177
D IIFSDILT A GV I GPVI++P+RS + + L +E+ L ++ D+++
Sbjct: 70 DAAIIFSDILTIPDAMGVDLHIAPTVGPVIRNPVRSAQDVNRLQMPAVEEALSYLFDAIR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+ K + ++GF G+PWT+A Y+ EG +++T+ T ++M + P V TLL LT
Sbjct: 130 LTVKALDHRVPLIGFAGSPWTLACYMTEGQSSKTFLTARAMLYQQPDVFHTLLQKLTTLT 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVRTKCP-ETPIVLYI 295
Y+ Q+++GA + +FD+WGG L P ++ Q+S Y+ +I + +VR K + P++ +
Sbjct: 190 IAYLNAQIKAGADVVMLFDTWGGLLTPSLYRQFSLDYLSQIAAEVVRQKNGRKIPLIFFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G +LE + +G D +GLDWT D+ R+R+G+ +++QGN+DPA L S +++
Sbjct: 250 KNGGQWLESIANSGCDAVGLDWTTDIGQARRRVGDRVALQGNLDPAILLSNPESISTAAV 309
Query: 356 RVVKCAGS-RGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDN 397
++K G GH+ NLGHG+ TP E VA E ++ N
Sbjct: 310 DILKSYGQGSGHVFNLGHGIDPSTPIENVAALVEAVQNFSIKN 352
|
|
| UNIPROTKB|Q9KV26 hemE "Uroporphyrinogen decarboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 122/335 (36%), Positives = 200/335 (59%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ YR + F + +L +++LQP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ GPV + PI + + + D E +LQ+V ++++
Sbjct: 70 DAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+RK++ ++GF G+PWT+ATY+VEGG+++ +T IK M ++ P VL LL L ++
Sbjct: 130 QIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVR-TKCPETPIVLYI 295
Y+ Q+++GA + +FD+WGG L P ++Q+S Y+ +IV L+R + P+ L+
Sbjct: 190 ISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G +LE++ TG D +GLDWT+++AD + R+G+ +++QGN+DP+ L++P P + +E+
Sbjct: 250 KNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVA 309
Query: 356 RVVKC--AGSRGHILNLGHGVLVGTPEEAVAHFFE 388
++ G GH+ NLGHG+ + P E F E
Sbjct: 310 SILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344
|
|
| TIGR_CMR|VC_0332 VC_0332 "uroporphyrinogen decarboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 122/335 (36%), Positives = 200/335 (59%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ YR + F + +L +++LQP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYRATRAQAGDFMALCKNAELASEVTLQPLRRFPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ GPV + PI + + + D E +LQ+V ++++
Sbjct: 70 DAAILFSDILTIPDAMGLGLRFAAGEGPVFERPITCKADVDKIGIPDPEGELQYVMNAVR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+RK++ ++GF G+PWT+ATY+VEGG+++ +T IK M ++ P VL LL L ++
Sbjct: 130 QIRKDLQGEVPLIGFSGSPWTLATYMVEGGSSKAFTKIKKMMYSEPTVLHALLDKLADSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVR-TKCPETPIVLYI 295
Y+ Q+++GA + +FD+WGG L P ++Q+S Y+ +IV L+R + P+ L+
Sbjct: 190 ISYLNAQIKAGAQAVMVFDTWGGVLTPRDYQQFSLQYMHKIVDGLIRENEGRRVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G +LE++ TG D +GLDWT+++AD + R+G+ +++QGN+DP+ L++P P + +E+
Sbjct: 250 KNGGMWLEQIAATGCDAVGLDWTINIADAKARVGDKVALQGNMDPSILYAPAPRIREEVA 309
Query: 356 RVVKC--AGSRGHILNLGHGVLVGTPEEAVAHFFE 388
++ G GH+ NLGHG+ + P E F E
Sbjct: 310 SILAGFGQGGTGHVFNLGHGIHLDVPPENAGVFVE 344
|
|
| TIGR_CMR|GSU_3453 GSU_3453 "uroporphyrinogen decarboxylase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 127/330 (38%), Positives = 202/330 (61%)
Query: 61 AAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDG 120
A G PV R P W+MRQAGRY+ Y + K +F E +T +L ++++QP + + D
Sbjct: 8 ACWGKPVDRTPVWLMRQAGRYLPEYMAVRSKC-TFLELCKTPELAAEVTIQPIDILNVDA 66
Query: 121 VIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKIL 179
I+FSDILTP+ G+ D V GPV + P+R+ ++ L + E+ + +V D++KIL
Sbjct: 67 AILFSDILTPVEPMGLKLDF--VPGPVFEHPVRTMADVEKLRIPNPEEDVPYVLDTIKIL 124
Query: 180 RKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIAD 239
R+E+ ++GF GAP+T+A Y+VEG ++ + IK M + AP V L+ +T +
Sbjct: 125 RRELAGRVPLIGFGGAPFTLACYMVEGKGSKDWANIKRMMYAAPDVYAALMDKVTMMDME 184
Query: 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG 299
Y+ Q+++GA IQIFD+WGG L P +E++ PY ++++ + + TP++ ++ G G
Sbjct: 185 YLNAQIKAGAQAIQIFDTWGGVLSPTDYEKYVLPYTTKLINGLNRQ--NTPVIHFVKGAG 242
Query: 300 GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVV- 358
LE ++ G DV+GLDW V++ R LG +++VQGN+DP L++P + E++RV+
Sbjct: 243 TMLETVQKAGGDVMGLDWHVNLGKARDVLGQNMAVQGNLDPTVLYAPKEVIEAEVKRVLD 302
Query: 359 KCAGSRGHILNLGHGVLVGTPEEAVAHFFE 388
+ AG GHI NLGHG+L P E H E
Sbjct: 303 ENAGRPGHIFNLGHGILPTVPPENAIHMVE 332
|
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| TIGR_CMR|SO_0435 SO_0435 "uroporphyrinogen decarboxylase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 128/343 (37%), Positives = 200/343 (58%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ Y+ + F + +L +++LQP +
Sbjct: 10 LRALLKQPVDMTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNHELACEVTLQPLRRYEL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ E GP + P + + +K L D E +L +V ++
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFERPTDTIDAIKKLSIPDPEDELGYVMKAVS 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+R+E+ ++GF G+PWT+ATY+VEGG+++T+ IK M + P L LL L ++
Sbjct: 130 TIRRELNGQVPLIGFSGSPWTLATYMVEGGSSKTFEKIKKMAYAEPAALHMLLDKLADSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVR-TKCPETPIVLYI 295
Y+ QV +GA + IFDSWGG L + ++S Y+++IV L R + P+ L+
Sbjct: 190 TLYLNAQVANGAQSLMIFDSWGGALSHTAYREFSLRYMQKIVDGLTRFADGRQVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G G +LE M TG D +GLDWTVD+AD R+R+G+ +++QGN+DP+ L++P+P + +E+
Sbjct: 250 KGGGLWLEAMAETGCDALGLDWTVDIADARRRVGHKVALQGNMDPSMLYAPIPRIEEEVG 309
Query: 356 RVVKCAGS-RGHILNLGHGVLVGT-PEEAVAHFFEV-GKSMKY 395
+++ G GH+ NLGHG+ PE A A V +S +Y
Sbjct: 310 QILAGYGEGTGHVFNLGHGIHQHVDPEHAGAFIKAVHAQSKQY 352
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| UNIPROTKB|P29680 hemE [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 123/334 (36%), Positives = 194/334 (58%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ Y+ + F + +L +++LQP +
Sbjct: 10 LRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ E GP SP+ + + L D E +L +V ++++
Sbjct: 70 DAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+R+E+ ++GF G+PWT+ATY+VEGG+++ +T IK M + P L LL L +++
Sbjct: 130 TIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKLAKSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVRTKCPE-TPIVLYI 295
Y+ Q+++GA + IFD+WGG L ++Q+S Y+ +IV L+R P+ L+
Sbjct: 190 TLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G G +LE M TG D +GLDWT D+AD R+R+GN +++QGN+DP+ L++P + +E+
Sbjct: 250 KGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVA 309
Query: 356 RVVKCAG-SRGHILNLGHGVLVGTPEEAVAHFFE 388
++ G GH+ NLGHG+ P E F E
Sbjct: 310 TILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343
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| TIGR_CMR|CPS_0448 CPS_0448 "uroporphyrinogen decarboxylase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 117/335 (34%), Positives = 194/335 (57%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
++A PV P WMMRQAGRY+ YR++ + F + +L ++++QP F
Sbjct: 10 LRALLKQPVDYTPVWMMRQAGRYLPEYREVRKNAGDFMSVCKNAELACEVTIQPLRRFPL 69
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KLQFVGDSLK 177
D I+FSDILT A G+ E GP + PI + + + D E +L +V ++++
Sbjct: 70 DAAILFSDILTIPDAMGLGLYFETGEGPKFERPITCKADVDKIAVPDPEDELGYVMNAVR 129
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
+RKE+ ++GF G+PWT+ATY++EGG+++ +T IK M P L LL L ++
Sbjct: 130 TIRKELKGEVPLIGFSGSPWTLATYMIEGGSSKAFTKIKKMMFAEPQTLHLLLDKLADSV 189
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS-LVR-TKCPETPIVLYI 295
Y+ Q+ +GA + +FD+WGG L P + ++S Y+ +IV L R + + P+ L+
Sbjct: 190 ISYLNAQIAAGAQSVMVFDTWGGVLSPRDYNEFSLQYMAKIVDGLTRHNEGRQVPVTLFT 249
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G +LE + TG D +GLDWT+D+ + + R+G+ +++QGN+DP+ L++PLP + E+
Sbjct: 250 KNGGMWLESIAATGCDAVGLDWTIDIENAKARVGDKVALQGNMDPSMLYAPLPRIEQEVS 309
Query: 356 RVVKC--AGSRGHILNLGHGVLVGTPEEAVAHFFE 388
+++ G GH+ NLGHG+ + HF E
Sbjct: 310 KILSGFGEGGTGHVFNLGHGIHPDVNPDHAGHFIE 344
|
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| TIGR_CMR|CHY_0483 CHY_0483 "uroporphyrinogen decarboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 123/333 (36%), Positives = 191/333 (57%)
Query: 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHP 118
+KA + P W+MRQAGRYMA Y ++ K+ SF E +T +L V+++LQP
Sbjct: 6 LKACRRENTPYTPVWLMRQAGRYMAEYMEIRNKY-SFLEMCKTPELAVEVTLQPVRKLGV 64
Query: 119 DGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLK 177
D I+F+DIL PL G+ F GPVI++P+R+ +K + I E+ + +V +++K
Sbjct: 65 DAAILFADILLPLEGMGIGFRFARDEGPVIENPVRTIVDVKKVRVITPEEDVPYVLEAIK 124
Query: 178 ILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAI 237
ILR+E+ ++GF GAP+T+A+YI+EGG ++ Y K + AP LL + ++
Sbjct: 125 ILRRELAGKVPLIGFSGAPFTLASYIIEGGGSKNYIQCKRLMWEAPEAWHELLGKIAEST 184
Query: 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297
Y+ Q+ +GA +Q+FDSW G L P +E++ P+ + + K P++ + N
Sbjct: 185 VRYLKAQIAAGAQAVQVFDSWVGTLSPEDYEKYVLPHSKYVFD--NLKETGVPVIHFANN 242
Query: 298 NGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRV 357
G LE + G DVIGLDW V + + +G D VQGN+DP LF+P + +++ +
Sbjct: 243 AGSMLELVAAAGGDVIGLDWRVSLDRAWQTVGFDRGVQGNLDPVALFAPKEVIRQKVKEI 302
Query: 358 VKCAGSR-GHILNLGHGVLVGTPEEAVAHFFEV 389
+ AG R GHI NLGHG+ TP E + EV
Sbjct: 303 LIKAGKRPGHIFNLGHGIHKETPVENAQYLVEV 335
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q114U6 | DCUP_TRIEI | 4, ., 1, ., 1, ., 3, 7 | 0.5438 | 0.8296 | 0.9632 | yes | no |
| Q5QVW3 | DCUP_IDILO | 4, ., 1, ., 1, ., 3, 7 | 0.3582 | 0.8053 | 0.9245 | yes | no |
| B1XIF6 | DCUP_SYNP2 | 4, ., 1, ., 1, ., 3, 7 | 0.5433 | 0.8394 | 0.9857 | yes | no |
| A5GJR6 | DCUP_SYNPW | 4, ., 1, ., 1, ., 3, 7 | 0.5481 | 0.8321 | 0.9715 | yes | no |
| Q8YQC4 | DCUP_NOSS1 | 4, ., 1, ., 1, ., 3, 7 | 0.5087 | 0.8345 | 0.98 | yes | no |
| A2BVP6 | DCUP_PROM5 | 4, ., 1, ., 1, ., 3, 7 | 0.5219 | 0.8272 | 0.9826 | yes | no |
| Q93ZB6 | DCUP1_ARATH | 4, ., 1, ., 1, ., 3, 7 | 0.7837 | 0.9489 | 0.9330 | yes | no |
| Q31BV1 | DCUP_PROM9 | 4, ., 1, ., 1, ., 3, 7 | 0.5073 | 0.8272 | 0.9826 | yes | no |
| Q7V8B4 | DCUP_PROMM | 4, ., 1, ., 1, ., 3, 7 | 0.5510 | 0.8321 | 0.9715 | yes | no |
| Q3AYE3 | DCUP_SYNS9 | 4, ., 1, ., 1, ., 3, 7 | 0.5655 | 0.8321 | 0.9715 | yes | no |
| O81220 | DCUP_MAIZE | 4, ., 1, ., 1, ., 3, 7 | 0.5515 | 0.8004 | 0.8371 | N/A | no |
| Q3AKV7 | DCUP_SYNSC | 4, ., 1, ., 1, ., 3, 7 | 0.5422 | 0.8321 | 0.9715 | yes | no |
| Q42855 | DCUP_HORVU | 4, ., 1, ., 1, ., 3, 7 | 0.5484 | 0.8004 | 0.9969 | N/A | no |
| Q3MC76 | DCUP_ANAVT | 4, ., 1, ., 1, ., 3, 7 | 0.5029 | 0.8345 | 0.98 | yes | no |
| Q0I8Y1 | DCUP_SYNS3 | 4, ., 1, ., 1, ., 3, 7 | 0.5539 | 0.8321 | 0.9743 | yes | no |
| B7KKW4 | DCUP_CYAP7 | 4, ., 1, ., 1, ., 3, 7 | 0.5436 | 0.8345 | 0.9716 | yes | no |
| Q7V2A0 | DCUP_PROMP | 4, ., 1, ., 1, ., 3, 7 | 0.5190 | 0.8272 | 0.9826 | yes | no |
| Q8DKW0 | DCUP_THEEB | 4, ., 1, ., 1, ., 3, 7 | 0.4926 | 0.8272 | 0.9912 | yes | no |
| A5GSG3 | DCUP_SYNR3 | 4, ., 1, ., 1, ., 3, 7 | 0.5451 | 0.8321 | 0.9715 | yes | no |
| Q7NEK2 | DCUP_GLOVI | 4, ., 1, ., 1, ., 3, 7 | 0.5266 | 0.8175 | 0.9682 | yes | no |
| A2CAR8 | DCUP_PROM3 | 4, ., 1, ., 1, ., 3, 7 | 0.5510 | 0.8321 | 0.9715 | yes | no |
| A5IDL1 | DCUP_LEGPC | 4, ., 1, ., 1, ., 3, 7 | 0.3649 | 0.8004 | 0.9346 | yes | no |
| A3PBV7 | DCUP_PROM0 | 4, ., 1, ., 1, ., 3, 7 | 0.5190 | 0.8272 | 0.9826 | yes | no |
| A2BQ64 | DCUP_PROMS | 4, ., 1, ., 1, ., 3, 7 | 0.5161 | 0.8272 | 0.9826 | yes | no |
| P54224 | DCUP_SYNY3 | 4, ., 1, ., 1, ., 3, 7 | 0.5368 | 0.8223 | 0.9657 | N/A | no |
| Q42967 | DCUP_TOBAC | 4, ., 1, ., 1, ., 3, 7 | 0.5166 | 0.8564 | 0.9002 | N/A | no |
| Q7VBL3 | DCUP_PROMA | 4, ., 1, ., 1, ., 3, 7 | 0.5406 | 0.8345 | 0.9772 | yes | no |
| A8G3U9 | DCUP_PROM2 | 4, ., 1, ., 1, ., 3, 7 | 0.5102 | 0.8272 | 0.9826 | yes | no |
| Q9AXB0 | DCUP1_ORYSJ | 4, ., 1, ., 1, ., 3, 7 | 0.7127 | 0.9099 | 0.9303 | yes | no |
| P16891 | DCUP_SYNE7 | 4, ., 1, ., 1, ., 3, 7 | 0.5174 | 0.8345 | 0.9689 | yes | no |
| Q5N4W6 | DCUP_SYNP6 | 4, ., 1, ., 1, ., 3, 7 | 0.5174 | 0.8345 | 0.9689 | yes | no |
| B2J9R9 | DCUP_NOSP7 | 4, ., 1, ., 1, ., 3, 7 | 0.5188 | 0.8369 | 0.9745 | yes | no |
| Q46LW7 | DCUP_PROMT | 4, ., 1, ., 1, ., 3, 7 | 0.5494 | 0.8345 | 0.9744 | yes | no |
| Q5WV12 | DCUP_LEGPL | 4, ., 1, ., 1, ., 3, 7 | 0.3679 | 0.8004 | 0.9346 | yes | no |
| Q2JKH3 | DCUP_SYNJB | 4, ., 1, ., 1, ., 3, 7 | 0.4939 | 0.8004 | 0.9508 | yes | no |
| Q2JX97 | DCUP_SYNJA | 4, ., 1, ., 1, ., 3, 7 | 0.5057 | 0.8321 | 0.9447 | yes | no |
| B1WVY1 | DCUP_CYAA5 | 4, ., 1, ., 1, ., 3, 7 | 0.5333 | 0.8369 | 0.9717 | yes | no |
| A1TYW3 | DCUP_MARAV | 4, ., 1, ., 1, ., 3, 7 | 0.3731 | 0.8053 | 0.9350 | yes | no |
| A2C141 | DCUP_PROM1 | 4, ., 1, ., 1, ., 3, 7 | 0.5552 | 0.8345 | 0.9744 | yes | no |
| B0JL12 | DCUP_MICAN | 4, ., 1, ., 1, ., 3, 7 | 0.5243 | 0.8467 | 0.9942 | yes | no |
| Q7U645 | DCUP_SYNPX | 4, ., 1, ., 1, ., 3, 7 | 0.5422 | 0.8321 | 0.9715 | yes | no |
| A9BAY8 | DCUP_PROM4 | 4, ., 1, ., 1, ., 3, 7 | 0.5465 | 0.8345 | 0.9772 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.1.37 | 0.979 |
| 3rd Layer | 4.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.182.88.1 | uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_XI000217 | coproporphyrinogen oxidase (EC-1.3.3.3) (300 aa) | • | • | • | • | 0.978 | ||||
 | gw1.XII.1260.1 | hypothetical protein (421 aa) | • | • | • | 0.974 | |||||
 | gw1.VI.1271.1 | ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa) | • | • | • | • | 0.958 | ||||
 | gw1.40.619.1 | hypothetical protein (272 aa) | • | • | • | • | 0.932 | ||||
 | eugene3.00150799 | glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa) | • | • | • | • | 0.930 | ||||
 | gw1.13426.3.1 | Delta-aminolevulinic acid dehydratase (293 aa) | • | • | • | • | 0.873 | ||||
 | fgenesh4_pm.C_LG_VII000271 | hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa) | • | • | • | • | • | 0.848 | |||
 | fgenesh4_pg.C_LG_V000312 | hydroxymethylbilane synthase (EC-2.5.1.61) (364 aa) | • | • | • | • | • | 0.844 | |||
 | gw1.16698.2.1 | Delta-aminolevulinic acid dehydratase (254 aa) | • | • | • | 0.829 | |||||
 | eugene3.00020758 | hypothetical protein (430 aa) | • | • | • | • | 0.802 | ||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 411 | |||
| PLN02433 | 345 | PLN02433, PLN02433, uroporphyrinogen decarboxylase | 0.0 | |
| cd00717 | 335 | cd00717, URO-D, Uroporphyrinogen decarboxylase (UR | 1e-167 | |
| PRK00115 | 346 | PRK00115, hemE, uroporphyrinogen decarboxylase; Va | 1e-166 | |
| TIGR01464 | 338 | TIGR01464, hemE, uroporphyrinogen decarboxylase | 1e-166 | |
| pfam01208 | 338 | pfam01208, URO-D, Uroporphyrinogen decarboxylase ( | 1e-132 | |
| COG0407 | 352 | COG0407, HemE, Uroporphyrinogen-III decarboxylase | 1e-121 | |
| cd03465 | 330 | cd03465, URO-D_like, The URO-D _like protein super | 6e-39 | |
| cd00465 | 306 | cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot | 5e-27 | |
| cd03307 | 326 | cd03307, Mta_CmuA_like, MtaA_CmuA_like family | 4e-23 | |
| PRK06252 | 339 | PRK06252, PRK06252, methylcobalamin:coenzyme M met | 3e-20 | |
| TIGR01463 | 340 | TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA | 4e-20 | |
| cd03309 | 321 | cd03309, CmuC_like, CmuC_like | 0.004 |
| >gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Score = 626 bits (1616), Expect = 0.0
Identities = 219/345 (63%), Positives = 273/345 (79%), Gaps = 1/345 (0%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
L++AA+G V RPP W+MRQAGRYM YR+L +K+PSFRERSET DL V+ISLQPW AF
Sbjct: 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFK 60
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALH-HIDLEKLQFVGDSL 176
PDGVI+FSDILTPLPA G+PFDI + +GPVI +PIRSEE +K LH EKL FVG++L
Sbjct: 61 PDGVILFSDILTPLPAMGIPFDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEAL 120
Query: 177 KILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQA 236
KILRKEVG AAVLGFVGAPWT+ATYIVEGG+++ Y IK M TAP VL LL LT A
Sbjct: 121 KILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIKKMAFTAPEVLHALLDKLTDA 180
Query: 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296
+ +Y+ YQ+++GA +QIFDSW G L P +E++S+PY+ +IV V+ + P+ P++LY N
Sbjct: 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240
Query: 297 GNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQR 356
G+GG LER+ GTGVDVIGLDWTVDMAD R+RLG+D++VQGNVDPA LF A+ E++
Sbjct: 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRD 300
Query: 357 VVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQN 401
VVK AG +GHILNLGHGVLVGTPEE VAHFF+V + ++Y+ +Q
Sbjct: 301 VVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELRYEMIAQA 345
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Length = 345 |
| >gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Score = 472 bits (1218), Expect = e-167
Identities = 146/331 (44%), Positives = 211/331 (63%), Gaps = 3/331 (0%)
Query: 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPD 119
+A +G PV RPP W MRQAGRY+ YR+L K+ SF E + +L +++LQP F D
Sbjct: 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVD 60
Query: 120 GVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHID-LEKLQFVGDSLKI 178
IIFSDIL PL A G+ + E +GPVI +PIR+E + L D E+L +V +++K+
Sbjct: 61 AAIIFSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIKL 120
Query: 179 LRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIA 238
RKE+ ++GF GAPWT+A+Y++EGG ++ + K M +T P LL LT A
Sbjct: 121 TRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATI 180
Query: 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN 298
+Y+ Q+E+GA +QIFDSW G L P +E++ PY++ I+ V+ + P P++L+ G
Sbjct: 181 EYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGA 240
Query: 299 GGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVV 358
GG LE + G DV+GLDW VD+ + RKRLG +++QGN+DPA L++P A+ E++R++
Sbjct: 241 GGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRIL 300
Query: 359 KCAGSR-GHILNLGHGVLVGTPEEAVAHFFE 388
K G GHI NLGHG+L TP E V E
Sbjct: 301 KAFGGAPGHIFNLGHGILPDTPPENVKALVE 331
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). Length = 335 |
| >gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 469 bits (1209), Expect = e-166
Identities = 145/339 (42%), Positives = 214/339 (63%), Gaps = 1/339 (0%)
Query: 51 SSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISL 110
+ + ++A +G PV R P WMMRQAGRY+ YR L K SF E + +L +++L
Sbjct: 1 TELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTL 60
Query: 111 QPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE-KL 169
QP + D I+FSDILTP A G+ D EE GPV +PIR+E ++ L D E L
Sbjct: 61 QPVRRYGVDAAILFSDILTPPDAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDL 120
Query: 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTL 229
+V +++++LR+E+G ++GF GAPWT+ATY+VEGG ++ Y K+M + P +L L
Sbjct: 121 PYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHAL 180
Query: 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPET 289
L L A Y+ Q+E+GA +QIFDSW G L P + ++ PY++ IV+ ++ + P+
Sbjct: 181 LDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDV 240
Query: 290 PIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPA 349
P++L+ G G LE M TG DV+GLDWTVD+A+ R+R+G+ ++QGN+DPA L +P A
Sbjct: 241 PVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEA 300
Query: 350 LTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFE 388
+ +E++ ++ G GHI NLGHG+L TP E V E
Sbjct: 301 IEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVE 339
|
Length = 346 |
| >gnl|CDD|233423 TIGR01464, hemE, uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Score = 468 bits (1207), Expect = e-166
Identities = 145/334 (43%), Positives = 217/334 (64%), Gaps = 2/334 (0%)
Query: 57 LLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAF 116
L ++AAKG V RPP W MRQAGRY+ YR+L K F E DL V+++LQP F
Sbjct: 1 LFLRAAKGEVVDRPPVWFMRQAGRYLPEYRELRAKAGDFLELCRNPDLAVEVTLQPIRRF 60
Query: 117 HPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDS 175
D IIFSDIL PL A G+ + E +GPVI +PIR+ E ++ L D E L +V ++
Sbjct: 61 GVDAAIIFSDILVPLQALGLDVEFVEGKGPVISNPIRTAEDVERLKEFDPESELSYVYEA 120
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQ 235
+K+LR+E+ ++GF GAPWT+A+Y++EGG ++ + K + P L LL+ LT
Sbjct: 121 IKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKRFMYQEPEALHALLNKLTD 180
Query: 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI 295
A +Y++ QV++GA +QIFDSW G L P +E++ PY+ +I+ V+ + P P++L+
Sbjct: 181 ATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLAKIIEEVKARLPGVPVILFA 240
Query: 296 NGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQ 355
G G LE + TG DV+GLDW+VD+ + RKR+G+ +++QGN+DPA L++P AL ++++
Sbjct: 241 KGAGHLLEELAETGADVVGLDWSVDLKEARKRVGDGVAIQGNLDPAVLYAPEEALEEKVE 300
Query: 356 RVVKCAGSR-GHILNLGHGVLVGTPEEAVAHFFE 388
R+++ G + G+I NLGHG+L TP E V E
Sbjct: 301 RILEAFGGKSGYIFNLGHGILPDTPPENVKALVE 334
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 338 |
| >gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D) | Back alignment and domain information |
|---|
Score = 383 bits (985), Expect = e-132
Identities = 137/344 (39%), Positives = 208/344 (60%), Gaps = 13/344 (3%)
Query: 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPW 113
+ L++A +G PV R P W+MRQAGRY+ YR L SF E + +L +++LQP+
Sbjct: 2 PNERLLRALRGEPVDRTPVWLMRQAGRYLPEYRALRAGA-SFLEACKDPELAAEVTLQPY 60
Query: 114 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKAL---HHIDLEKLQ 170
F D I+FSDIL A G D E GPV+++PIR+ E ++ L ++ E+L
Sbjct: 61 RRFGLDAAILFSDILVEAEAMGCEVDFGEGEGPVVENPIRTPEDVEKLEVPDPLEDERLP 120
Query: 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLL 230
+V ++++ILRKE+G+ ++GFVG P+T+A+Y+VEG + K + + P ++ LL
Sbjct: 121 YVLEAIRILRKELGDEVPLIGFVGGPFTLASYLVEG-----FEKFKKLMYKDPELVHALL 175
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290
LT A+ +Y+ Q+E+GA IQIFDSW G L P + ++ PY++ IV V+ + P P
Sbjct: 176 DKLTDAVIEYLKAQIEAGADAIQIFDSWAGLLSPEDFREFVLPYLKRIVDEVKARGP-GP 234
Query: 291 IVLYINGNG-GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPA 349
++L+I GNG LE M TG DVI LDWTVD+A+ ++ +G D+++QGN+DPA L
Sbjct: 235 VILHICGNGTPILEDMAETGADVISLDWTVDLAEAKRIVG-DVALQGNLDPALLLGTPEE 293
Query: 350 LTDEIQRVVKCAGS-RGHILNLGHGVLVGTPEEAVAHFFEVGKS 392
+ E++ +++ GHI NLGHG+ TP E V E
Sbjct: 294 IEAEVKEILEAGDGGPGHIFNLGHGIPPDTPPENVKALVEAVHE 337
|
Length = 338 |
| >gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 355 bits (912), Expect = e-121
Identities = 137/344 (39%), Positives = 214/344 (62%), Gaps = 4/344 (1%)
Query: 48 SSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQ 107
+ + +D L +A KG PV R P WMMRQAGRY+ YR L EK SF E + +L +
Sbjct: 1 MTEMTKNDRFL-RALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAE 59
Query: 108 ISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE 167
++LQP + D I+FSDIL P A G E +GP + PIR +E ++ L +
Sbjct: 60 VTLQPVRRYGLDAAILFSDILVPPEALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDP 119
Query: 168 --KLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHV 225
+L +V D++K+LR+++G ++GF G+PWT+A+Y++EGG ++ ++ K+M +T P
Sbjct: 120 EGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDA 179
Query: 226 LRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK 285
+ LL LT A+ +Y+ Q+E+GA +QIFDSW G L ++++ PY++ IV V+
Sbjct: 180 VHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEV 239
Query: 286 CPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFS 345
P++ + G G LE M TG DV+G+DW VD+ + +KRLG+ +++QGN+DPA L++
Sbjct: 240 KGGVPVIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYA 299
Query: 346 PLPALTDEIQRVVKCAG-SRGHILNLGHGVLVGTPEEAVAHFFE 388
P A+ +E++R+++ G G+I NLGHG+L TP E V E
Sbjct: 300 PPEAIKEEVKRILEDGGDGSGYIFNLGHGILPETPPENVKALVE 343
|
Length = 352 |
| >gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 6e-39
Identities = 83/334 (24%), Positives = 149/334 (44%), Gaps = 28/334 (8%)
Query: 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPD 119
A G R P + G + S +E +L + + ++ F PD
Sbjct: 2 AALNGEKPDRVPVGPLLHGGA-----AEFIGI--SLKEYYTDPELGAEAQIALYKKFGPD 54
Query: 120 GVIIFSDILTPLPAFGVPFDIEEVRGPVIQ-SPIRSEEGLKALHHIDLEKLQFVG---DS 175
+ +FSD+ AFG E P ++ I EE L D + ++
Sbjct: 55 AIKVFSDLFVEAEAFGAEIRYPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEA 114
Query: 176 LKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR-TYTTIKSMCHTAPHVLRTLLSHLT 234
+++L++E+G+ V+G VG P+T+A+ ++ G ++ P ++ LL T
Sbjct: 115 IRLLKEELGDRVPVIGAVGGPFTLASLLM--GASKFLMLLYTD-----PELVHKLLEKCT 167
Query: 235 QAIADYIIYQVESGAHCIQIFDSWGGQ--LPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292
+ I Y +E+GA I I D W L P ++++S PY++++ K P++
Sbjct: 168 EFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFD--AIKALGGPVI 225
Query: 293 LYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACLFSPLPAL 350
+ G+ LE M G DV +D TVD+A+ +K++G+ + GN+DP L + P
Sbjct: 226 HHNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEE 285
Query: 351 T-DEIQRVVKCAGSRGH--ILNLGHGVLVGTPEE 381
+E++ +++ G IL+ G + TP E
Sbjct: 286 IKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIE 319
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. Length = 330 |
| >gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-27
Identities = 64/310 (20%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 71 PAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTP 130
P Q G A + P ++E +V+ P + + D+L
Sbjct: 1 PVQCEGQTGIMEASETMAISEEPGETSKAEWGITLVEPEEIPLDVIP----VHEDDVLKV 56
Query: 131 LPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVL 190
A G + P + E+ LE + V +
Sbjct: 57 AQALGEWAFRYYSQAPSVPEIDEEEDPF--REAPALEHITAVRSLEEF---------PTA 105
Query: 191 GFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250
G G P+T + + G + P + L+ +LT+ I +Y +E+GA
Sbjct: 106 GAAGGPFTFTHHSMSMGD------ALMALYERPEAMHELIEYLTEFILEYAKTLIEAGAK 159
Query: 251 CIQIFDSWGGQ----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-LERM 305
+QI + Q L P M+++++ P +++ E PIV + + LE M
Sbjct: 160 ALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA--GEVPIVHHSCYDAADLLEEM 217
Query: 306 KGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSR 364
GVDVI D TV + + +++G ++ G VDP L + +++ +V+ G
Sbjct: 218 IQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLG-P 276
Query: 365 GHILNLGHGV 374
+I+N G+
Sbjct: 277 HYIINPDCGL 286
|
Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc. Length = 306 |
| >gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-23
Identities = 72/276 (26%), Positives = 125/276 (45%), Gaps = 35/276 (12%)
Query: 128 LTPLPAFGVPFDIE---EVRG-----------PVIQS-PIRSEEGLKALHHIDLEK--LQ 170
+ A VPF + E G P + S P + E ++ L LE+ +
Sbjct: 53 VAGFEAVRVPFCMTVEAEALGCEVDWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIP 112
Query: 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLL 230
V +++KIL+++ GE V+G + P ++A+++ +K + P +R L
Sbjct: 113 TVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG-----VENFLKWLI-KKPEKVREFL 166
Query: 231 SHLTQAIADYIIYQVESGAHCIQIFDSWGGQ--LPPHMWEQWSEPYIREIVSLVRTKCPE 288
LT+A +Y Q+E+GA I I D + P +E+++ PY ++IV +
Sbjct: 167 EFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIV----KELHG 222
Query: 289 TPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACLFSP 346
P +L+I GN LE + G D I +D VD+ ++ +G ++ GNV P L +
Sbjct: 223 CPTILHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNG 282
Query: 347 LPA-LTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE 381
P + E ++ ++ G IL G G+ TP
Sbjct: 283 TPEDVKAEARKCLE-DGVD--ILAPGCGIAPRTPLA 315
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. Length = 326 |
| >gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 88/367 (23%), Positives = 149/367 (40%), Gaps = 64/367 (17%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
L+ A KG V R P + Q G T +L+ I+ W H
Sbjct: 9 LLNALKGKEVDRVPVICVTQTG---------------------TVELM-DITGAYWPEAH 46
Query: 118 PDGVI-----IFSDILTPLPAFGVPFDIE---EVRG-----------P-VIQSPIRSEEG 157
D I + A VPF + E G P V + PI+ +
Sbjct: 47 SDPEKMADLAIAGYEVAGFEAVRVPFCMTVEAEAMGCEVDMGTKDRQPSVTKYPIKKDVE 106
Query: 158 LKALHHIDLEK--LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYT-- 213
+ L LE+ + V +++KIL+++VGE ++ + P ++A+ ++ + +
Sbjct: 107 YRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMG---PKNFLKW 163
Query: 214 TIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQ--LPPHMWEQWS 271
IK P + L +T +Y Q+E+GA I I D L P M+E++
Sbjct: 164 LIKK-----PELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFV 218
Query: 272 EPYIREIVSLVRTKCPETPIVLYINGN-GGFLERMKGTGVDVIGLDWTVDMADGRKRLGN 330
PY+ +I+ + P +L+I G+ LE M G D I +D VD+ ++ +G+
Sbjct: 219 LPYLNKIID----EVKGLPTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGD 274
Query: 331 DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRG-HILNLGHGVLVGTPEEAVAHFFEV 389
++ GNV + F+ L ++++ K G IL G G+ TP E + E
Sbjct: 275 RAALIGNVSTS--FTLLNGTPEKVKAEAKKCLEDGVDILAPGCGIAPKTPLENIKAMVEA 332
Query: 390 GKSMKYD 396
K +
Sbjct: 333 RKEYYAE 339
|
Length = 339 |
| >gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 4e-20
Identities = 69/346 (19%), Positives = 136/346 (39%), Gaps = 22/346 (6%)
Query: 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFH 117
L A G V P + Q + E ++ E + + +++ +E F
Sbjct: 9 LFAAVTGQTVDDVPPCVPTQ----TLTTELMRECGATWPEAHRDGEAMAHLAIAAYEKFG 64
Query: 118 PDGVIIFSDILTPLPAFGVPFDIEEV-RGPVIQSP-IRSEEGLKALHHIDLE--KLQFVG 173
+ V D+ T G D + V + P + + + L+ ++ V
Sbjct: 65 GEAVRPPFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIPVVL 124
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
+++KILR+ G+ ++G +G P+T+A ++ ++ + T P + +L
Sbjct: 125 EAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWIS------TDPDYAKAVLELA 178
Query: 234 TQAIADYIIYQVESGAHCIQIFD--SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI 291
+ Y VE+GA I I D + + P ++++ PY + + + + K
Sbjct: 179 LDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYI--KEIGGIT 236
Query: 292 VLYINGN-GGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPAL 350
VL+I G L + G +D M ++ +G S+ GN+ P
Sbjct: 237 VLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTP- 295
Query: 351 TDEIQRVVKCAGSRG-HILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
++++++ K G I+ G + TP E + E KS+KY
Sbjct: 296 -EKVKKLAKEVLYNGGDIVMPGCDIDWMTPLENLKAMIEACKSIKY 340
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. Length = 340 |
| >gnl|CDD|239425 cd03309, CmuC_like, CmuC_like | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 20/126 (15%)
Query: 239 DYIIYQVESGAHCIQIFDSWGGQ----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294
D ++Y D G Q + P + ++ P ++ I +R+ IV +
Sbjct: 171 DLLVYH-----------DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSA-LIVHH 218
Query: 295 INGNG-GFLERMKGTGVDVIGLDWT-VDMADGRKRLGNDISVQGNVDPACLFSPLPALTD 352
G + M GVD + T + A+ R+ LG+ + + G +D L +
Sbjct: 219 SCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVAL--DTATWPE 276
Query: 353 EIQRVV 358
E R V
Sbjct: 277 EDARGV 282
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. Length = 321 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 100.0 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 100.0 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 100.0 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 100.0 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 100.0 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 100.0 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 100.0 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 100.0 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 100.0 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 100.0 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 100.0 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 100.0 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 100.0 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 100.0 | |
| PRK04326 | 330 | methionine synthase; Provisional | 99.9 | |
| PRK00957 | 305 | methionine synthase; Provisional | 99.81 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 99.65 | |
| cd03310 | 321 | CIMS_like CIMS - Cobalamine-independent methonine | 99.48 | |
| PRK01207 | 343 | methionine synthase; Provisional | 99.29 | |
| PRK08575 | 326 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.17 | |
| PRK09121 | 339 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.14 | |
| PRK06052 | 344 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.1 | |
| PRK06233 | 372 | hypothetical protein; Provisional | 99.08 | |
| PRK06520 | 368 | 5-methyltetrahydropteroyltriglutamate--homocystein | 99.01 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.97 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.95 | |
| cd03312 | 360 | CIMS_N_terminal_like CIMS - Cobalamine-independent | 98.92 | |
| PF01717 | 324 | Meth_synt_2: Cobalamin-independent synthase, Catal | 98.9 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 98.85 | |
| COG0620 | 330 | MetE Methionine synthase II (cobalamin-independent | 98.81 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 98.69 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.66 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.58 | |
| PF08267 | 310 | Meth_synt_1: Cobalamin-independent synthase, N-ter | 96.94 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 96.79 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 95.94 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.54 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 95.53 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.41 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 95.4 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 95.11 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 95.09 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 94.99 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 94.84 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 94.8 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 94.72 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 94.72 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 94.7 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.43 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 94.36 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 94.34 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 94.31 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 94.18 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.35 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 93.29 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 92.99 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 92.91 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 92.81 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 92.72 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 92.71 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 92.68 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 92.66 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 92.61 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 92.55 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.46 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 92.42 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.39 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.32 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 92.27 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.27 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 92.24 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.24 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 92.24 | |
| PRK07094 | 323 | biotin synthase; Provisional | 92.23 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 91.92 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 91.89 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 91.87 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 91.81 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 91.31 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 91.27 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 91.23 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 90.89 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 90.74 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 90.69 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 90.57 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 90.49 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 90.48 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 90.25 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 90.16 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 90.12 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 90.09 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 90.09 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 90.05 | |
| PRK08508 | 279 | biotin synthase; Provisional | 89.8 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 89.77 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 89.59 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 89.58 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 89.57 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 89.51 | |
| PRK06256 | 336 | biotin synthase; Validated | 89.44 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 89.27 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 89.18 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 89.18 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 88.99 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 88.84 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 88.58 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 88.52 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 88.37 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 88.3 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 88.14 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 88.11 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 88.09 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 88.0 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 87.94 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 87.9 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 87.63 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 87.6 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 87.57 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 87.44 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 87.36 | |
| TIGR00381 | 389 | cdhD CO dehydrogenase/acetyl-CoA synthase, delta s | 87.26 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 87.05 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 87.02 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 86.92 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 86.84 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 86.72 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 86.69 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 86.65 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 86.57 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 86.55 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 86.54 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 86.5 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 86.49 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 86.49 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 86.4 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 86.38 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 86.3 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 86.17 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 86.05 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 85.53 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 85.52 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 85.4 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 85.2 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 84.96 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 84.88 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 84.86 | |
| PLN02389 | 379 | biotin synthase | 84.7 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 84.57 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 84.37 | |
| PLN02591 | 250 | tryptophan synthase | 83.9 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 83.86 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 83.62 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 83.57 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 83.48 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 83.33 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 82.98 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 82.89 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 82.81 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 82.3 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 82.15 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 82.11 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 81.89 | |
| cd08213 | 412 | RuBisCO_large_III Ribulose bisphosphate carboxylas | 81.79 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 81.76 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 81.6 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 81.45 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 81.27 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 81.27 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 81.14 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 80.91 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 80.8 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 80.77 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 80.74 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 80.57 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 80.53 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 80.39 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 80.28 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 80.25 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 80.14 |
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-74 Score=569.32 Aligned_cols=344 Identities=64% Similarity=1.130 Sum_probs=326.5
Q ss_pred HHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCe
Q 015201 58 LVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVP 137 (411)
Q Consensus 58 v~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~ 137 (411)
++++++|+++||+|||+|+|+|+|+|+|+++++...++.+++.||+++++++++++++||+|++++++|+.++++|||++
T Consensus 1 ~~~~~~g~~~dr~Pv~~~~q~g~~~~ey~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~di~~~~ea~G~~ 80 (345)
T PLN02433 1 LLRAARGEKVERPPVWLMRQAGRYMKEYRELCKKYPSFRERSETPDLAVEISLQPWRAFKPDGVILFSDILTPLPAMGIP 80 (345)
T ss_pred ChHHHCCCCCCCCCeeeeecchhccHHHHHHHHhcCCHHHHhCCHHHHHHHHHHHHHHhCCCeEEecCCCCcCHHHcCCe
Confidence 46899999999999999999999999999887655579999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHH
Q 015201 138 FDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIK 216 (411)
Q Consensus 138 ~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l 216 (411)
+.|+++.+|++.+||++++|+++|+.++++. ++.++++++++++++++++|++++++||||+|++|+||++++++++++
T Consensus 81 i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~l~~~leai~~l~~~~~~~v~iig~v~gP~Tla~~l~gg~~~~~~~~~~ 160 (345)
T PLN02433 81 FDIVKGKGPVIPNPIRSEEDVKRLHPLDPEEKLPFVGEALKILRKEVGNEAAVLGFVGAPWTLATYIVEGGSSKNYKVIK 160 (345)
T ss_pred EEECCCCCCccCCCCCCHHHHHhccCCCchhhhHHHHHHHHHHHHHhCCCCceeeeCCcHHHHHHHHHcCCCCccHHHHH
Confidence 9999887897788999999999998877755 999999999999999999999999999999999999987788899999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 217 SMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 217 ~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
.+++++||.+|++|+++++.+++|+++++|+||++++++|+|++++||++|+||++||+|++++.+++.+++.|+++|+|
T Consensus 161 ~~l~~~Pe~v~~ll~~it~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c 240 (345)
T PLN02433 161 KMAFTAPEVLHALLDKLTDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN 240 (345)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998755678999999
Q ss_pred CCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC
Q 015201 297 GNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV 376 (411)
Q Consensus 297 G~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~ 376 (411)
|+...++++.++|++++++|+.+|+.++++.+|++++++||+||.+|.||+|+|+++|+++|+.++++|||+++||++|+
T Consensus 241 G~~~~~~~~~~~~~~~i~~d~~~dl~e~~~~~g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~ 320 (345)
T PLN02433 241 GSGGLLERLAGTGVDVIGLDWTVDMADARRRLGSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLV 320 (345)
T ss_pred CCHHHHHHHHhcCCCEEEcCCCCCHHHHHHHhCCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCC
Confidence 99767899999999999999999999999999999999999999877899999999999999998777899999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCCCC
Q 015201 377 GTPEEAVAHFFEVGKSMKYDNSSQN 401 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~~yg~~~~~~~ 401 (411)
+||+||++||++++|+||+.++.|.
T Consensus 321 ~tp~eNi~a~v~av~~~~~~~~~~~ 345 (345)
T PLN02433 321 GTPEENVAHFFDVARELRYEMIAQA 345 (345)
T ss_pred CCCHHHHHHHHHHHHHhChhhhccC
Confidence 9999999999999999999999874
|
|
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=568.83 Aligned_cols=342 Identities=42% Similarity=0.799 Sum_probs=324.9
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
.+++||++++++|+++||+|||+|.++|+|+|+|++++.+++++.|++.|++++++++++++++||+|++++++|+.+++
T Consensus 2 ~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~~ 81 (346)
T PRK00115 2 ELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTPP 81 (346)
T ss_pred CcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhhH
Confidence 37999999999999999999999999999999999999888679999999999999999999999999999999999999
Q ss_pred ccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 132 PAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 132 ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
+|||+++.|+++.+|++.++|++++|+++|+.++++. ++.++++++++++++++++|++++++||||++++|+||+.++
T Consensus 82 ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~~ 161 (346)
T PRK00115 82 DAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVPDPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGSK 161 (346)
T ss_pred HHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCCCchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCCc
Confidence 9999999999888998888899999999999888765 999999999999999999999999999999999999866677
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
++++++++++++||.+|++|+.+++.+++|+++++++|||+|+++|+++++|||++|+||++||+|++++.+++.+|+.
T Consensus 162 ~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~- 240 (346)
T PRK00115 162 DYAKTKAMMYAEPELLHALLDKLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDV- 240 (346)
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999975444
Q ss_pred EEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 291 IVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 291 ~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
.++|.||++. .++++.++|++++++|+.+|+.++++.+|++++++||+||.+|+||+|+|+++|+++|+.++++||||+
T Consensus 241 ~ilh~cg~~~~~~~~~~~~~~~~is~d~~~dl~~~k~~~g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~ 320 (346)
T PRK00115 241 PVILFGKGAGELLEAMAETGADVVGLDWTVDLAEARRRVGDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFN 320 (346)
T ss_pred CEEEEcCCcHHHHHHHHhcCCCEEeeCCCCCHHHHHHHcCCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeee
Confidence 4789999987 689999999999999999999999999999999999999977789999999999999999877899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
+||++|++||+|||+||++++|+|+
T Consensus 321 ~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 321 LGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred cCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999987
|
|
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=540.42 Aligned_cols=343 Identities=40% Similarity=0.766 Sum_probs=327.3
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
++++|+++|++||++||+|||+++|||||+|+|+.++++..+|.|+|.|||+++++++++.++||+|++++++|++++++
T Consensus 5 ~~~~~fl~al~g~~vdr~PVw~mrqAgry~pey~~~r~~~~s~~d~~~~~e~~~evtl~p~~~~~~DAailf~DIlv~~~ 84 (352)
T COG0407 5 TKNDRFLRALKGKPVDRTPVWMMRQAGRYLPEYRALREKGGSFLEACKNPELAAEVTLQPVRRYGLDAAILFSDILVPPE 84 (352)
T ss_pred chHHHHHHHHcCCCCCCCCeEeeecccccccHHHHHHHhcCCHHHHhcCHHHHHHHHhhhHHHhCCCeeeeehhhcccHH
Confidence 89999999999999999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCC-CCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHH-IDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~-~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
+||++++|.++.+|.+..|+.+.+|.+.+.. ++++. ++.++++++++++++++++|++|+++||||+|++|++|++++
T Consensus 85 alG~~v~f~~~~gP~v~~~~~~~~~~~~~~~~~~~~~~~~~V~~ai~~lrekl~~~~pLIgf~gsP~TlAsymieg~~s~ 164 (352)
T COG0407 85 ALGCEVRFGEGKGPSVLKPIRDKEDVELLVPLLDPEGRLPYVLDAIKLLREKLGGEVPLIGFAGSPWTLASYLIEGGGSK 164 (352)
T ss_pred HcCCeeecCCCCCCccCCCCCchhhhhhccCCcCcccchHHHHHHHHHHHHHcCCCCCeEEecCCHHHHHHHHHcCCCcc
Confidence 9999999999999998889999999877774 67766 999999999999999999999999999999999999998899
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
++.+++.+|+++||.+|++|++++|.++.|+++|+++|||.|+++|+|++-+++..|++|..||.+++++.+++.+++.|
T Consensus 165 ~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~p 244 (352)
T COG0407 165 DFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGVP 244 (352)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764544
Q ss_pred EEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEE
Q 015201 291 IVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHIL 368 (411)
Q Consensus 291 ~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIl 368 (411)
++|.|++.. +++.+.+.|+|++++|+.++++++++..|++.+++||+||.+|++++|+|+++++++|+.+.+ .||||
T Consensus 245 -ii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l~~a~~~~~~~~~lqGNldP~lL~~~~~~i~~~~~~iL~~~~~~~~~If 323 (352)
T COG0407 245 -VIHFCKGAGHLLEDMAKTGFDVLGVDWRVDLKEAKKRLGDKVALQGNLDPALLYAPPEAIKEEVKRILEDGGDGSGYIF 323 (352)
T ss_pred -EEEECCCcHHHHHHHHhcCCcEEeeccccCHHHHHHHhCCCceEEeccChHhhcCCHHHHHHHHHHHHHHhccCCCcee
Confidence 789999988 689999999999999999999999999999899999999977889999999999999999987 59999
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
++||+|+|+||+||+++|++++++|+..
T Consensus 324 nlGhGI~P~tp~e~v~~lve~v~~~~~~ 351 (352)
T COG0407 324 NLGHGILPETPPENVKALVEAVHEYSRE 351 (352)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999864
|
|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-71 Score=544.46 Aligned_cols=335 Identities=44% Similarity=0.845 Sum_probs=316.6
Q ss_pred HHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCC
Q 015201 57 LLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGV 136 (411)
Q Consensus 57 Rv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~ 136 (411)
|++++++|+++||+|||+|+++|+|+|+|++++.+.+++.|++.||+++++++++++++||+|++++++|+.++++|||+
T Consensus 1 ~~~~~~~g~~~dr~Pv~~~~~~g~~~~~~~~~~~~~~~~~e~~~~~e~~ae~~~~~~~~~~~D~~~i~~d~~~~~ea~G~ 80 (338)
T TIGR01464 1 LFLRAAKGEEVDRPPVWLMRQAGRYLPEYRELRAKAPDFLELCRNPDLAVEVTLQPIRRFGVDAAILFSDILVPLQALGL 80 (338)
T ss_pred ChhHHhCCCCCCCCCeeeehhcccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccccccHHHcCC
Confidence 57899999999999999999999999999999888767999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHH
Q 015201 137 PFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTI 215 (411)
Q Consensus 137 ~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~ 215 (411)
++.|+++.+|++.+++++.+|+++|+.++++. ++.++++++++++++++++|++++++||||++++|+||++.++++++
T Consensus 81 ~i~~~~~~~P~~~~~i~~~~d~~~l~~~~~~~~~~~~leai~~l~~~~~~~~pi~g~~~gP~Tla~~l~~g~~~~~~~~~ 160 (338)
T TIGR01464 81 DVDFVEGKGPVIPEPIRTPEDVERLKEFDPESELPYVYEAIKLLREELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKA 160 (338)
T ss_pred eeEecCCCCCccCCCCCCHHHHHhcCCCChhhchHHHHHHHHHHHHHcCCCCceEEeCCchHHHHHHHHcCCCCccHHHH
Confidence 99999888897788899999999999887765 99999999999999999999999999999999999987677889999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
+++++++||.+|++++.+++.+++|+++++|+|+|+++++|+|+++|||++|+||++||++|+++.++++.++.+ ++|.
T Consensus 161 ~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~-ilh~ 239 (338)
T TIGR01464 161 KRFMYQEPEVLHALLNKLTDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVP-VILF 239 (338)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998733544 7899
Q ss_pred cCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCC
Q 015201 296 NGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLGHG 373 (411)
Q Consensus 296 CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~ 373 (411)
||++. .++++.++|++++++|+.+|+.++++.+|++++++||+||..|+||+|+|+++|+++|+.+++ +||||++||+
T Consensus 240 cg~~~~~~~~~~~~~~~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~ 319 (338)
T TIGR01464 240 AKGAGHLLEELAETGADVVGLDWTVDLKEARKRVGPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHG 319 (338)
T ss_pred eCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCc
Confidence 99887 689999999999999999999999999999999999999977789999999999999999864 8999999999
Q ss_pred CCCCCcHHHHHHHHHHHHh
Q 015201 374 VLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~ 392 (411)
+|++||+|||+||++++|+
T Consensus 320 i~~~tp~eni~a~v~a~~~ 338 (338)
T TIGR01464 320 ILPDTPPENVKALVEYVHS 338 (338)
T ss_pred CCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999974
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. |
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=535.07 Aligned_cols=331 Identities=44% Similarity=0.832 Sum_probs=312.3
Q ss_pred HHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCeee
Q 015201 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFD 139 (411)
Q Consensus 60 ~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~~ 139 (411)
+|++|+++||||+|++.++|+|+|+|++++.++ ++.+++.|||++++++++++++||+|++++++|+.+++||||+++.
T Consensus 2 ~a~~g~~~DriPv~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~e~~~e~~~~~~~~~g~D~~~i~~d~~~~~ea~G~~i~ 80 (335)
T cd00717 2 RALRGEPVDRPPVWFMRQAGRYLPEYRELRAKY-SFLELCKNPELAAEVTLQPVRRFGVDAAIIFSDILVPLEAMGMDVE 80 (335)
T ss_pred ccccCCCCCCCCeeeehhcccccHHHHHHHccC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHcCCeEE
Confidence 689999999999999999999999999999888 7999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHH
Q 015201 140 IEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSM 218 (411)
Q Consensus 140 ~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~ 218 (411)
|+++.+|.+.+++++.+|+++++.+++.. ++.++++++++++++++++|++++++||||++++|+|+++.++|++++++
T Consensus 81 ~~~~~~p~~~~~i~~~~d~~~~~~~~~~~~~~~~leai~~l~~~~~~~~~i~g~v~gP~Tla~~l~~~~~~~~~~~~~~~ 160 (335)
T cd00717 81 FVEGKGPVIPNPIRTEADVDRLLVPDPEEELSYVYEAIKLTRKELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKM 160 (335)
T ss_pred eCCCCCCcCCCCCCCHHHHHhccCCChhhhhHHHHHHHHHHHHHcCCCceEEeecCCHHHHHHHHHCCCCCccHHHHHHH
Confidence 99877887788899999999988777666 99999999999999999999999999999999999986566788999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC
Q 015201 219 CHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN 298 (411)
Q Consensus 219 l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~ 298 (411)
++++||.+|++++.+++.+++++++++|+|+|+|+++|+++++|||++|+||++||+||+++.+++++|+.+ ++|.||+
T Consensus 161 l~~~Pe~v~~~l~~it~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~cg~ 239 (335)
T cd00717 161 MYTDPEAFHALLDKLTDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVP-VILFAKG 239 (335)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999854554 6788887
Q ss_pred cc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCC
Q 015201 299 GG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLGHGVLV 376 (411)
Q Consensus 299 ~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~ 376 (411)
.. +++++.++|++++++|+.+|+.++++.+|++++++||+||..|.+++|+|+++|+++|+.+++ +||||++||++|+
T Consensus 240 ~~~~~~~~~~~~~~~~s~d~~~dl~e~k~~~g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~ 319 (335)
T cd00717 240 AGGLLEDLAQLGADVVGLDWRVDLDEARKRLGPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILP 319 (335)
T ss_pred CHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCC
Confidence 76 689999999999999999999999999999999999999987778999999999999999986 8999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 015201 377 GTPEEAVAHFFEVGKS 392 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~~ 392 (411)
+||+|||+||++++|+
T Consensus 320 ~tp~eNi~a~v~a~~~ 335 (335)
T cd00717 320 DTPPENVKALVEAVHS 335 (335)
T ss_pred CcCHHHHHHHHHHHhC
Confidence 9999999999999974
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). |
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=503.05 Aligned_cols=345 Identities=44% Similarity=0.828 Sum_probs=334.4
Q ss_pred CCCCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccc
Q 015201 50 SSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILT 129 (411)
Q Consensus 50 ~~~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~ 129 (411)
.+.+|++.+++|.+|+++||+|||+|+|+|||+|+|+++++++ +|.+.|+|||...|.++++.++|..|++++++|+++
T Consensus 7 fp~~kndlllRAakGE~vdrpPvW~MRQAGRYl~eyqel~~k~-~Ff~~c~~~el~~EitlQP~rrF~~DaaIIFSDILv 85 (359)
T KOG2872|consen 7 FPALKNDLLLRAAKGEEVDRPPVWIMRQAGRYLPEYQELRAKQ-DFFETCRNPELACEITLQPLRRFRLDAAIIFSDILV 85 (359)
T ss_pred CCCCCchHHHHHhcCcccCCCchHHHHHhhcccHHHHHHHHhc-cHHHhcCCccceeeEecchhhccCCceeEEeecccc
Confidence 4578999999999999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred ccccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc--hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCC
Q 015201 130 PLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK--LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGG 207 (411)
Q Consensus 130 ~~ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~--~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~ 207 (411)
++.|||..+.+.++.||++..|+.+++|++++..+++.. ++++.+|++++|.++++++|++||+++|||++++++.|+
T Consensus 86 ipqalgm~v~m~egkGP~~p~Plr~~eDl~rl~~~~~~~s~L~yVgdAit~~R~kl~g~vpl~GF~GaPwTlm~YmiEGG 165 (359)
T KOG2872|consen 86 IPQALGMPVDMVEGKGPVFPEPLRVPEDLKRLRDPEVVESELGYVGDAITLTRQKLDGRVPLIGFVGAPWTLMTYMIEGG 165 (359)
T ss_pred CchhcCceEEEeeccCCCCCCCCCCHHHHHHhccCcchhhhcchHHHHHHHHHHHhcCccceeeecCCchhhheeeecCC
Confidence 999999999999999999999999999999998766543 899999999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 015201 208 TTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP 287 (411)
Q Consensus 208 ~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~ 287 (411)
++++|...-.|++..||..|++|+++|+.+++|+..|+++||..++++|+|++-+||++|+||++||+++|+++++++.+
T Consensus 166 gSkt~~~aK~w~~~~Pe~sh~lL~~lTda~v~Yl~~Qv~aGAq~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~ 245 (359)
T KOG2872|consen 166 GSKTFTQAKRWLFQYPEVSHALLQILTDAIVEYLVYQVVAGAQALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLP 245 (359)
T ss_pred CchhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC-----CEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC
Q 015201 288 ET-----PIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 288 g~-----~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~ 362 (411)
.. |++++.-|+...|+.++++|+|++++|+.+|+.+++++.|++++++||+||..|+|++|+|.+.++++++.+|
T Consensus 246 ~~~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ear~~~g~~VtlQGNlDP~~ly~s~e~it~~v~~mv~~fG 325 (359)
T KOG2872|consen 246 ELGLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEARRRVGNRVTLQGNLDPGVLYGSKEEITQLVKQMVKDFG 325 (359)
T ss_pred hhcCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHHHHhhCCceEEecCCChHHhcCCHHHHHHHHHHHHHHhC
Confidence 77 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+.+||++.||++-++||+|++..|+|++|++++
T Consensus 326 ~~ryI~NLGHGi~p~tp~e~v~~f~E~~h~~~~ 358 (359)
T KOG2872|consen 326 KSRYIANLGHGITPGTPPEHVAHFVEAVHKIGY 358 (359)
T ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999985
|
|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-68 Score=525.98 Aligned_cols=332 Identities=32% Similarity=0.565 Sum_probs=278.2
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
|||||++++++|+++||||||++++++++++.|.....+. ++.+++.|++++++++++++++||+|++.+++|..++++
T Consensus 1 T~~er~~~~~~~~~~DrvPv~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~ae~~~~~~~~~~~D~~~~~~d~~~~ae 79 (343)
T PF01208_consen 1 TSRERVLAALNGEPVDRVPVWPMRQAGRYLPEYAAEKTGI-SFPEYCRDPEKMAEAQIKAYEKFGPDFIKIPFDLTVEAE 79 (343)
T ss_dssp -S--HHHHHHTT---SS--B--TTSSSTTSHHHHHHHHHS-SHHHHCTSHHHHHHHHHHHHHHC--SEEE-S--TTHHHH
T ss_pred CchhHHHHHHcCCCCCCcCeEccccccccChHHHHHhcCc-chHHHhcCHHHHHHHHHHHHHhcCCCEEEecCceeehHH
Confidence 7899999999999999999999888888888776655566 699999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCCCCcc--c-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHH---cC
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLE--K-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIV---EG 206 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~--~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~---gg 206 (411)
+||+++.++++.+|.+.+++.+++|+++|+.+++. . ++.++++++++++++++++|+++++.|||++++.|+ |
T Consensus 80 a~G~~v~~~~~~~P~~~~~~~~~eD~~~l~~~~~~~~~~~~~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g- 158 (343)
T PF01208_consen 80 ALGCEVEFPEDDGPSVEEPIISPEDLDKLKIPDPENEGRLPEVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRG- 158 (343)
T ss_dssp GCTTEEEEETTTEEEESS---SHHHHHTS--GGHHH-HHTHHHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-
T ss_pred HcCCeEEecCCCCCccccCcCCHHHHhhhcccCcchhhhHHHHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCC-
Confidence 99999999998889876654499999999999873 3 899999999999999999999999999999999999 6
Q ss_pred CCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 015201 207 GTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC 286 (411)
Q Consensus 207 ~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~ 286 (411)
+++++++|+++||.++++++++++.+++++++++++|+|+|+++|.++++|||++|+||++||+||+++.+|++
T Consensus 159 -----~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~- 232 (343)
T PF01208_consen 159 -----FEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEA- 232 (343)
T ss_dssp ------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHH-
T ss_pred -----HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 68999999999999999999999999999999999999999999977789999999999999999999999998
Q ss_pred CCC-CEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCc-CccCCCHHHHHHHHHHHHHH-hC
Q 015201 287 PET-PIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACLFSPLPALTDEIQRVVKC-AG 362 (411)
Q Consensus 287 ~g~-~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~-~~L~gt~eeV~~ev~~~i~~-~~ 362 (411)
|. ++++|+||++. .++.+.++|+|++++++.+|+.++++++|++++++||+|| ..|.||+|+|+++|+++|+. .+
T Consensus 233 -g~~~~~lH~cG~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~ 311 (343)
T PF01208_consen 233 -GKDPVILHICGNTTPILDDLADLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLA 311 (343)
T ss_dssp -ETE-EEEEETTHG-GGHHHHHTSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHC
T ss_pred -CCCceEEEECCchHHHHHHHHhcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcC
Confidence 56 89999999997 7899999999999999999999999999999999999999 45569999999999999995 55
Q ss_pred -CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 363 -SRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 363 -~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++||||++||++|++||+||++||++++|+|
T Consensus 312 ~~~gfIl~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 312 GGGGFILSPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp TSSSEEBEBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999998
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=506.18 Aligned_cols=328 Identities=24% Similarity=0.356 Sum_probs=301.1
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
=|++||++++++|+++||+|||+++++|++ +|.+++. . ++.|++.||+.+++++++++++||+|++++++|+.+++
T Consensus 3 mt~~er~~~~~~g~~~dr~Pv~~~~~~g~~--e~~~~~g-~-~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~a 78 (339)
T PRK06252 3 LTPKERLLNALKGKEVDRVPVICVTQTGTV--ELMDITG-A-YWPEAHSDPEKMADLAIAGYEVAGFEAVRVPFCMTVEA 78 (339)
T ss_pred CCHHHHHHHHHCCCCCCccCccchhhhHHH--HHHHHcC-C-CchhccCCHHHHHHHHHHHHHhcCCCeeccCcchHHHH
Confidence 378999999999999999999999998876 5655443 4 69999999999999999999999999999999999999
Q ss_pred ccCCCeeeecC-CCCCc-cCCCCCChhhhhcCCCCCcc-c-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCC
Q 015201 132 PAFGVPFDIEE-VRGPV-IQSPIRSEEGLKALHHIDLE-K-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGG 207 (411)
Q Consensus 132 ea~G~~~~~~~-~~~p~-~~~pi~~~eD~~~l~~~d~~-~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~ 207 (411)
++||+++.|.+ +.+|. .++++++.+|+.+++.++.+ . ++.++++++++++++++++|++++++||||++++++|
T Consensus 79 ea~G~~v~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~~leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g-- 156 (339)
T PRK06252 79 EAMGCEVDMGTKDRQPSVTKYPIKKDVEYRKLPDDLLEEGRIPTVLEAIKILKEKVGEEVPIIAGLTGPISLASSLMG-- 156 (339)
T ss_pred HHhCCeecCCCCCCCCcccccccccChhhhhcccchhhCccHhHHHHHHHHHHHHcCCcCceeCccCChHHHHHHHHH--
Confidence 99999999974 46886 57889999999999764433 3 9999999999999999899999999999999999997
Q ss_pred CCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhh
Q 015201 208 TTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTK 285 (411)
Q Consensus 208 ~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~ 285 (411)
.++++++++++||.+|++++++++.+++|+++++++|+|+|+++|+|++ ++||++|+||++||++|+++.++++
T Consensus 157 ----~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~ 232 (339)
T PRK06252 157 ----PKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL 232 (339)
T ss_pred ----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 4788999999999999999999999999999999999999999999986 9999999999999999999999863
Q ss_pred CCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCc-Ccc-CCCHHHHHHHHHHHHHHhC
Q 015201 286 CPETPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDP-ACL-FSPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 286 ~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~-~~L-~gt~eeV~~ev~~~i~~~~ 362 (411)
+.++|+||+.. .++++.++|+|++++++.+|+.++++.+|++++++||+|| ..| .||+|+|+++++++++.
T Consensus 233 ----~~ilH~cG~~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~g~~~~i~Gnidp~~~l~~gt~eeI~~~v~~~l~~-- 306 (339)
T PRK06252 233 ----PTILHICGDLTSILEEMADCGFDGISIDEKVDVKTAKENVGDRAALIGNVSTSFTLLNGTPEKVKAEAKKCLED-- 306 (339)
T ss_pred ----CcEEEECCCchHHHHHHHhcCCCeeccCCCCCHHHHHHHhCCCeEEEeccCcHHHhcCCCHHHHHHHHHHHHHc--
Confidence 56899999997 6899999999999999999999999999999999999999 444 69999999999999984
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
|++|+++||+++++||+||++||++++|+||.+
T Consensus 307 -g~~Il~~gcgi~~~tp~enl~a~v~a~~~~~~~ 339 (339)
T PRK06252 307 -GVDILAPGCGIAPKTPLENIKAMVEARKEYYAE 339 (339)
T ss_pred -CCCEEcCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999964
|
|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=501.89 Aligned_cols=317 Identities=24% Similarity=0.348 Sum_probs=292.3
Q ss_pred HHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCee
Q 015201 59 VKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPF 138 (411)
Q Consensus 59 ~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~ 138 (411)
++|++||++||+|||+++++++ ++|.+.... ++.|++.|||.+++++++++++||+|++++++|+.++++|||+++
T Consensus 1 ~~~~~g~~~dr~Pv~~~~~~~~--~e~~~~~g~--~~~e~~~~~e~~ae~~~~~~~~~g~D~~~~~~di~~~~ea~G~~v 76 (326)
T cd03307 1 LAALNGQPVDRVPVICPTQTGT--VELMEATGA--YWPEAHSDAEKMADLAAAGHEVAGFEAVRVPFCMTVEAEALGCEV 76 (326)
T ss_pred CccccCCCCCccCcccchhhHH--HHHHHHhCC--cchhhhcCHHHHHHHHHHHHHHhCCCeeecCCccchHHHhcCCee
Confidence 3689999999999999999887 777666533 599999999999999999999999999999999999999999999
Q ss_pred eecCC-CCCcc-CCCCCChhhhhcCCCCC-ccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHH
Q 015201 139 DIEEV-RGPVI-QSPIRSEEGLKALHHID-LEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTT 214 (411)
Q Consensus 139 ~~~~~-~~p~~-~~pi~~~eD~~~l~~~d-~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~ 214 (411)
.|.++ .+|.+ ++|+++.+|+++++.++ .+. ++.++++++++++++++++|++++++||||++++++| .++
T Consensus 77 ~~~~~~~~P~v~~~~i~~~~d~~~l~~~~~~~~~~~~v~eai~~l~~~~~~~~pvig~~~gP~Tla~~l~g------~~~ 150 (326)
T cd03307 77 DWGTKDIQPSVTSHPFKKLEDVEKLPDDFLERGRIPTVLEAIKILKEKYGEEVPVIGGMTGPASLASHLAG------VEN 150 (326)
T ss_pred ccCCCCCCccccCCCCCCHHHHhhccccccccccHHHHHHHHHHHHHHcCCcceeeCCCCCHHHHHHHHHh------HHH
Confidence 99865 48976 78899999999886433 233 9999999999999999899999999999999999997 478
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 215 IKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 215 ~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
++++|+++||.+|++++++++.+++|+++++++|+|+|+++|+|++ ++||++|+||++||+||+++.+++ .+++
T Consensus 151 ~~~~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~----~~~i 226 (326)
T cd03307 151 FLKWLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG----CPTI 226 (326)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc----CCcE
Confidence 8999999999999999999999999999999999999999999985 889999999999999999999986 3689
Q ss_pred EEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-c-cCCCHHHHHHHHHHHHHHhCCCCeEEe
Q 015201 293 LYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-C-LFSPLPALTDEIQRVVKCAGSRGHILN 369 (411)
Q Consensus 293 ~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~-L~gt~eeV~~ev~~~i~~~~~~gfIls 369 (411)
+|+||+.. .++.+.++|+|++++|+.+|+.++++.+|++++++||+||. . +.||+|+|+++|+++++. ++|||+
T Consensus 227 lh~cG~~~~~l~~~~~~g~d~~~~d~~~dl~e~~~~~g~~~~i~Gnidp~~~l~~gt~e~i~~~~~~~l~~---g~~Il~ 303 (326)
T cd03307 227 LHICGNTTPILEYIAQCGFDGISVDEKVDVKTAKEIVGGRAALIGNVSPSQTLLNGTPEDVKAEARKCLED---GVDILA 303 (326)
T ss_pred EEECCCChhHHHHHHHcCCCeecccccCCHHHHHHHcCCceEEEeCCChHHHhcCCCHHHHHHHHHHHHHc---cCCEec
Confidence 99999987 68999999999999999999999999999999999999997 4 479999999999999997 369999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHh
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+||++|++||+||++||++++++
T Consensus 304 ~Gc~i~~~tp~env~a~v~a~~e 326 (326)
T cd03307 304 PGCGIAPRTPLANLKAMVEARKE 326 (326)
T ss_pred CcCCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999985
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-65 Score=503.24 Aligned_cols=319 Identities=22% Similarity=0.360 Sum_probs=294.2
Q ss_pred CcHHHHHHHHcCCCCCCccc---------ccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEee
Q 015201 53 SSDPLLVKAAKGHPVSRPPA---------WMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVII 123 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv---------~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~ 123 (411)
|++||++++++||++||+|| |+++++|++ +.||+.||+++++++++++++||+|++++
T Consensus 4 t~~er~~~~~~g~~~dr~Pv~~~~~~~~~~~~~~~G~~-------------~~e~~~~~~~~a~~~~~~~~~~~~D~~~~ 70 (340)
T TIGR01463 4 TPKERLFAAVTGQTVDDVPPCVPTQTLTTELMRECGAT-------------WPEAHRDGEAMAHLAIAAYEKFGGEAVRP 70 (340)
T ss_pred CHHHHHHHHhcCCCCCcCCcccchHHHHHHHHHHhCCc-------------chhhcCCHHHHHHHHHHHHHHhCCCeeec
Confidence 78999999999999999999 555555554 55778999999999999999999999999
Q ss_pred ccCcccccccCCCeeeecCCCCCccC-CC-CCChhhhhcCCCCCc-cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHH
Q 015201 124 FSDILTPLPAFGVPFDIEEVRGPVIQ-SP-IRSEEGLKALHHIDL-EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTI 199 (411)
Q Consensus 124 ~~d~~~~~ea~G~~~~~~~~~~p~~~-~p-i~~~eD~~~l~~~d~-~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~ 199 (411)
++|+.++++|||+++.|.++.+|.+. +| +++++|+++++.+|. +. ++.++++++++++++++++|++++++||||+
T Consensus 71 ~~d~~~~aea~G~~i~~~~~~~P~v~~~~~i~~~~d~~~l~~~~~~~~~~~~~l~ai~~l~~~~~~~~pv~g~v~GP~Tl 150 (340)
T TIGR01463 71 PFDLTTEAECVGCELDYGPYAQPSVTKHPTPTNLADYRYPENYLLKPGRIPVVLEAIKILRERYGDTHPIIGPMGGPFTL 150 (340)
T ss_pred CCCcchHHHhcCCeecCCCCCCCccccCCCCCCHHHhccccccCcCCcchhhHHHHHHHHHHHcCCceeeeCCCCcHHHH
Confidence 99999999999999999988789764 47 699999999987753 33 9999999999999999999999999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHH
Q 015201 200 ATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIRE 277 (411)
Q Consensus 200 a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~ 277 (411)
+++|+| .++++++++++||.+|++++.+++.+++++++++++|+|+|+++|++++ ++||++|+||++||+++
T Consensus 151 a~~l~g------~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~ 224 (340)
T TIGR01463 151 AQLMIG------VSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKR 224 (340)
T ss_pred HHHHHC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHH
Confidence 999997 4788999999999999999999999999999999999999999999875 99999999999999999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCc-c-CCCHHHHHHHH
Q 015201 278 IVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPAC-L-FSPLPALTDEI 354 (411)
Q Consensus 278 i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~-L-~gt~eeV~~ev 354 (411)
+++.+++. +.+.++|+||+.. .++.+.++|+|++++|+.+|+.++++.+|++++++||+||.. + .||+|+|++++
T Consensus 225 i~~~i~~~--g~~~ilH~CG~~~~~~~~l~~~g~d~ls~d~~~~l~~~~~~~g~~~~i~Gnidp~~ll~~gt~eeI~~~v 302 (340)
T TIGR01463 225 LFAYIKEI--GGITVLHICGFTQPILRDIANNGCFGFSVDMKPGMDHAKRVIGGQASLVGNLSPFSTLMNGTPEKVKKLA 302 (340)
T ss_pred HHHHHHhc--CCceEEEECCCchhhHHHHHHhCCCEEeecCCCCHHHHHHHcCCceEEEecCChHHHhcCCCHHHHHHHH
Confidence 99999987 3467899999998 689999999999999999999999999999999999999964 4 59999999999
Q ss_pred HHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 355 QRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 355 ~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+++++. ++|||++||++|++||+||++||++++|+|++
T Consensus 303 ~~~l~~---~~~Il~~gcgi~~~tp~eni~a~v~a~~~~~~ 340 (340)
T TIGR01463 303 KEVLYN---GGDIVMPGCDIDWMTPLENLKAMIEACKSIKY 340 (340)
T ss_pred HHHHHc---CCeEECCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 999984 58999999999999999999999999999984
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=473.75 Aligned_cols=318 Identities=26% Similarity=0.462 Sum_probs=292.3
Q ss_pred HHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCCeee
Q 015201 60 KAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGVPFD 139 (411)
Q Consensus 60 ~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~~~~ 139 (411)
++++|+++||||+|++.+.++ ++|.++ ++.|++.|++++++++++++++|++|++++++|+.+++++||+++.
T Consensus 2 ~a~~g~~~drvPv~~~~~~~~--~~~~g~-----~~~e~~~d~e~~~e~~~~~~~~~~~D~~~~~~d~~~~~ealG~~i~ 74 (330)
T cd03465 2 AALNGEKPDRVPVGPLLHGGA--AEFIGI-----SLKEYYTDPELGAEAQIALYKKFGPDAIKVFSDLFVEAEAFGAEIR 74 (330)
T ss_pred chhcCCCCCccceeeeecccc--hhhcCc-----cHHHHhcCHHHHHHHHHHHHHHcCCCeEEeccCccchHHhcCCeEe
Confidence 689999999999999876554 555443 5899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccC-CCCCChhhhhcCCCCCc--cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHH
Q 015201 140 IEEVRGPVIQ-SPIRSEEGLKALHHIDL--EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTI 215 (411)
Q Consensus 140 ~~~~~~p~~~-~pi~~~eD~~~l~~~d~--~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~ 215 (411)
++++.+|.+. +++++.+|++++..+++ +. ++.++++++++++++++++|+++++.||||++.+++| .+++
T Consensus 75 ~~~~~~p~v~~~~~~~~~d~~~~~~~~~~~~~r~~~~l~a~~~l~~~~~~~~~v~g~~~gP~t~a~~l~g------~~~~ 148 (330)
T cd03465 75 YPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPELLEAIRLLKEELGDRVPVIGAVGGPFTLASLLMG------ASKF 148 (330)
T ss_pred ecCCCCCccccccCCCHHHHhhccCCCcCccchHHHHHHHHHHHHHHhCCCeeeeccCCCHHHHHHHHHh------HHHH
Confidence 9988888764 55899999997654333 33 8999999999999999889999999999999999997 5789
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
+++++++||.++++++.+++.+++++++++++|+|+|+++|++++ +|||++|+||++||+||+++.+++. |.++++
T Consensus 149 ~~~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~l 226 (330)
T cd03465 149 LMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIH 226 (330)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEE
Confidence 999999999999999999999999999999999999999999885 7899999999999999999999987 578999
Q ss_pred EecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcC-cc-CCCHHHHHHHHHHHHHHhCC--CCeEE
Q 015201 294 YINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPA-CL-FSPLPALTDEIQRVVKCAGS--RGHIL 368 (411)
Q Consensus 294 H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~-~L-~gt~eeV~~ev~~~i~~~~~--~gfIl 368 (411)
|+||+.. .++.+.++|+|+++++..+|+.++++.+|++++++||+||. .| .||+|+|+++++++|+.+++ +||||
T Consensus 227 H~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il 306 (330)
T cd03465 227 HNCGDTAPILELMADLGADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYIL 306 (330)
T ss_pred EECCCchhHHHHHHHhCCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 9999996 78999999999999999999999999999999999999997 66 59999999999999999875 89999
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
++||++|+++|+|||+||++++|+
T Consensus 307 ~~gc~i~~~~p~enl~a~v~a~~~ 330 (330)
T cd03465 307 SSGCEIPPDTPIENIKAMIDAVRE 330 (330)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999985
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. |
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=453.52 Aligned_cols=323 Identities=15% Similarity=0.148 Sum_probs=279.4
Q ss_pred cHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccc--cc
Q 015201 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILT--PL 131 (411)
Q Consensus 54 ~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~--~~ 131 (411)
..||+.++++||++||||+..+ ++.+...|.++ ++.|+++|++++++++.+.+++||+|++.+++++.. ++
T Consensus 5 r~eR~~~~~~g~~~DRvP~~~~--~~~~~~~~~G~-----~~~e~~~d~~~~a~~~~~~~~~~g~D~~~~~~~l~~~~~a 77 (378)
T cd03308 5 RVQRLKDAIEGKKPDRVPILSQ--FTEWFIQYAGM-----TLKEAQWDTDKLEEAYDKVLKDFDFDITPGSASLRPPSFY 77 (378)
T ss_pred HHHHHHHHHcCCCCCceeecch--hhHHHHHHcCc-----cHHHHhcCHHHHHHHHHHHHHHcCccccccccccCCchHH
Confidence 4699999999999999998553 23344444333 689999999999999999999999999999999888 79
Q ss_pred ccCCCeeeecCC--CCCcc-CCCCCChhhhhcCCCCCcc---------------------chHHHHHH------------
Q 015201 132 PAFGVPFDIEEV--RGPVI-QSPIRSEEGLKALHHIDLE---------------------KLQFVGDS------------ 175 (411)
Q Consensus 132 ea~G~~~~~~~~--~~p~~-~~pi~~~eD~~~l~~~d~~---------------------~~~~~~ea------------ 175 (411)
++||+++.+.+. ..|.+ .+++++++|++++.. ++. .++.++++
T Consensus 78 ealG~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~lpr~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~ 156 (378)
T cd03308 78 QALGSKNFKMSSGGFLQHPEVYEYMEADEYDEFIA-DPYDFIVEKILPRIYKELAEDPAEKSLALAKAAAAFVDYNNTNG 156 (378)
T ss_pred HHhcccceecCCCCccCcchhhccCCHHHHHHHHh-CHHHHHHHhHhhhhhhhhcccchhhHHHHHHHHHHHHHHHhhHH
Confidence 999999975432 23433 457889999884332 111 24466777
Q ss_pred --HHHHH-HHhCCceeEEEecccHHH-HHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 176 --LKILR-KEVGEHAAVLGFVGAPWT-IATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 176 --ik~l~-~~~~~~~~v~~~~~gPft-~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
+++++ +++|+.+|+.+.+.|||+ +++.|+| +++++++|+++||.+|++|+++++.+++|+++++++|+++
T Consensus 157 ~~~~~l~~~~~g~~vpi~~~~~gPf~~la~~l~g------~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~ 230 (378)
T cd03308 157 PIGAKLAEKEYGTPLNAGGVSEAPFDIIGDYLRG------FKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPG 230 (378)
T ss_pred HHHHHHHhhccCCccccceeEeCChHHHHHHHhC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888 888888999999999997 8889987 7999999999999999999999999999999999999995
Q ss_pred ---EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc-EEEcCCCCCHHHHHH
Q 015201 252 ---IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD-VIGLDWTVDMADGRK 326 (411)
Q Consensus 252 ---i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d-~l~~d~~~di~~~~~ 326 (411)
++++++|+++|||++|+||++||+||+++.+++. |.++++|+||++. +++++.++|.+ ++++++.+|+.++++
T Consensus 231 ~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~--g~~~ilh~cG~~~~~l~~l~~~g~~~v~~~~~~~dl~~ak~ 308 (378)
T cd03308 231 PVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAAR--GQRIFLFFEGDWERYLEYLQELPKGKTVGLFEYGDPKKVKE 308 (378)
T ss_pred ceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcCCCcHHHHHHHHhcCCCcEEEcCCCCCHHHHHH
Confidence 4555668899999999999999999999999986 5789999999998 68999999998 677777799999999
Q ss_pred HhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhC-CCCeEEeCCCCCCCCCc--HHHHHHHHHHHHh
Q 015201 327 RLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAG-SRGHILNLGHGVLVGTP--EEAVAHFFEVGKS 392 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~-~~gfIls~gc~i~~~tp--~Eni~a~~~a~~~ 392 (411)
.+|++++++||+||..| .||+|+|+++|+++|+.++ ++||||++||+++++|| +||++||++++|+
T Consensus 309 ~~g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~~eNi~a~v~av~~ 378 (378)
T cd03308 309 KLGDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAKPENLIAVIEFVRE 378 (378)
T ss_pred HhCCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCChHHHHHHHHHHhC
Confidence 99999999999999865 5999999999999999998 58999999999999998 9999999999985
|
|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=371.87 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=264.4
Q ss_pred ccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeec-cCcccccccCCCeeeecCCCCCccC
Q 015201 71 PAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIF-SDILTPLPAFGVPFDIEEVRGPVIQ 149 (411)
Q Consensus 71 Pv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~-~d~~~~~ea~G~~~~~~~~~~p~~~ 149 (411)
|||++++++++.+.|..+ +. ++.+++.|++.+++.....+ ||+|.+..+ +++.+++++||+.+.+.++.+|.+.
T Consensus 1 Pv~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~g~D~~~~~~~~~~~~~ealg~~~~~~~~~~p~v~ 75 (306)
T cd00465 1 PVQCEGQTGIMEASETMA--IS-EEPGETSKAEWGITLVEPEE--IPLDVIPVHEDDVLKVAQALGEWAFRYYSQAPSVP 75 (306)
T ss_pred CeEEEccCccccHHHHhh--cC-CchhhhCCchhhceeecccc--CCCCeeeecCcceeehhhhcCceEEecCCCCCCCC
Confidence 899999999988876542 22 58899999999999998887 999999999 9999999999999987777677654
Q ss_pred CCCCChhhhhcCCCCCccchHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHH
Q 015201 150 SPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTL 229 (411)
Q Consensus 150 ~pi~~~eD~~~l~~~d~~~~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~l 229 (411)
.+..+. +..+++.++++++.+++.. ++|+++++.||||++.+++|. +.++.+++++|+.++++
T Consensus 76 ~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~GP~Tla~~l~~~------~~~~~~~~~~p~~~~~l 138 (306)
T cd00465 76 EIDEEE---------DPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSMSM------GDALMALYERPEAMHEL 138 (306)
T ss_pred CcccCC---------ChhhHHHHHHHHHHHHhcc--ccceEeecCCHHHHHHHHHcc------cHHHHHHHHChHHHHHH
Confidence 443221 2223788899999999885 689999999999999999983 57789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLER 304 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~ 304 (411)
++.+++.+++++++++++|+|+|++.|++++ ++||++|++|++||+|++++.++.. +.++++|+||+.. .++.
T Consensus 139 l~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~--~~~~~lH~cg~~~~~~~~ 216 (306)
T cd00465 139 IEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAG--EVPIVHHSCYDAADLLEE 216 (306)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhc--CCceEEEECCCHHHHHHH
Confidence 9999999999999999999999999999885 4799999999999999999999875 5688999999976 6899
Q ss_pred HhcCCCcEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcH--H
Q 015201 305 MKGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPE--E 381 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~--E 381 (411)
+.++|+|++++|..+ |+.++++.+|++++++|||+|..+.||+|+|+++++++++.+++ |||+++||++++++|+ |
T Consensus 217 l~~~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~~~~~~~e~i~~~v~~~l~~~~~-~~il~~~cgi~~~~~~~~e 295 (306)
T cd00465 217 MIQLGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPGYLPATDEECIAKVEELVERLGP-HYIINPDCGLGPDSDYKPE 295 (306)
T ss_pred HHHhCcceEecccccCCHHHHHHHhCCCEEEECCCCccccCCCHHHHHHHHHHHHHHhCC-CeEEeCCCCCCCCCCCcHH
Confidence 999999999999887 99999999999999999999996679999999999999999877 9999999999999999 9
Q ss_pred HHHHHHHHHHh
Q 015201 382 AVAHFFEVGKS 392 (411)
Q Consensus 382 ni~a~~~a~~~ 392 (411)
|++||++++++
T Consensus 296 nl~a~v~a~~~ 306 (306)
T cd00465 296 HLRAVVQLVDE 306 (306)
T ss_pred HHHHHHHHhhC
Confidence 99999999985
|
Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc. |
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=312.81 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=194.4
Q ss_pred CCChhhhh-cCCCCCccchHHHHHHHH-HHHHHhCCc-eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHH
Q 015201 152 IRSEEGLK-ALHHIDLEKLQFVGDSLK-ILRKEVGEH-AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRT 228 (411)
Q Consensus 152 i~~~eD~~-~l~~~d~~~~~~~~eaik-~l~~~~~~~-~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ 228 (411)
++++.+|. ..+.|+........++.+ .+..--.++ ++.....+|||++++.|+| +++++++|+++||.+|+
T Consensus 75 ~~~~~~w~~~v~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~Gpf~~a~~l~g------~e~~~~~l~~~PE~v~~ 148 (321)
T cd03309 75 VDDITKWKDYVKPPDIQHPLDWQAPARADLQSLDRNDLVIDVPLPGGVFERFRLRMS------MEDALMALYEEPEAAHE 148 (321)
T ss_pred hHHHHHHHHhccCCCCCCcccchhhhHHHHHhcccccceeccCCCCCHHHHHHHHHH------HHHHHHHHHHCHHHHHH
Confidence 66777774 345555543101111111 111111122 3334456799999999997 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH
Q 015201 229 LLSHLTQAIADYIIYQVES-GAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL 302 (411)
Q Consensus 229 ll~~~~d~~~~~~~~~~e~-G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l 302 (411)
+|+++++.+++|+++++++ |+|+|+++|+|++ +|||++|+||++||+|||++.+|+.+ +.|+++|+||+.. ++
T Consensus 149 lld~ltd~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~~~~l 227 (321)
T cd03309 149 LFDYLTDAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAAASLV 227 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCcHHHH
Confidence 9999999999999999999 9999999999986 69999999999999999999999875 6789999999986 78
Q ss_pred hHHhcCCCcEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCCCC
Q 015201 303 ERMKGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGS-RGHILNLGHGVLVGT 378 (411)
Q Consensus 303 ~~~~e~g~d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~~t 378 (411)
+.+.++|+|++++++.. |+.++++.+|++++++||+||..| . +|+|+|+++|+++++.+++ +|||++++|++|.++
T Consensus 228 ~~~~e~g~dvl~~d~~~~dl~eak~~~g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~~~~ 307 (321)
T cd03309 228 PSMAEMGVDSWNVVMTANNTAELRRLLGDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLPFSI 307 (321)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHhCCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCCccc
Confidence 99999999999999886 999999999999999999999876 4 5689999999999999997 999999999999999
Q ss_pred cHHHHHHHHHH
Q 015201 379 PEEAVAHFFEV 389 (411)
Q Consensus 379 p~Eni~a~~~a 389 (411)
++||++++-+.
T Consensus 308 ~~~~~~~~~~~ 318 (321)
T cd03309 308 FPEVLRRVSAF 318 (321)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. |
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=202.32 Aligned_cols=254 Identities=14% Similarity=0.123 Sum_probs=191.1
Q ss_pred HHhhhhhHHHhCCCEE----------eeccCcccccccCCCeeeecCCC---CCccCCCCCChhhhhcCCCCCccchHHH
Q 015201 106 VQISLQPWEAFHPDGV----------IIFSDILTPLPAFGVPFDIEEVR---GPVIQSPIRSEEGLKALHHIDLEKLQFV 172 (411)
Q Consensus 106 ae~~~~~~~~f~~D~~----------~~~~d~~~~~ea~G~~~~~~~~~---~p~~~~pi~~~eD~~~l~~~d~~~~~~~ 172 (411)
++.....++++|+|.+ ..++....+..++|+.+++.... .|.+..++ ...+ +..
T Consensus 48 ~~~~v~~q~~~Gld~itdGe~~r~~~~~~f~~~~~G~~~~~~~~~~~~~~~~~P~v~g~~---------~~~~----~~~ 114 (330)
T PRK04326 48 VRLVVKDHERAGVDIPVDGEMRREEMVEYFAERIEGFKFYGPVRVWGNNYFRKPSVVGKI---------EYKE----PML 114 (330)
T ss_pred HHHHHHHHHHhCCCeeeCCeEEcHhHHHHHHHhCCceeccCceeccccccccCCeEEEec---------cCCC----CCc
Confidence 6677788899999998 44455555566677776643211 13221122 1111 234
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
+++++.+++..++ .++.+.+.||+|++..+.. ++ ..+++|.++ .+.+...++++.+.++|++.|
T Consensus 115 l~~~~~~~~~~~~-~~vk~~l~GP~Tla~~~~~--------~~---y~~~~e~~~----~l~~~~~~~i~~l~~~G~~~i 178 (330)
T PRK04326 115 VDEFEFAKSVTYT-RPVKVPITGPYTIAEWSFN--------EY---YKDKEELVF----DLAKVINEEIKNLVEAGAKYI 178 (330)
T ss_pred HHHHHHHHhcccC-CCceEeccCHHHHHhhccc--------cc---CCCHHHHHH----HHHHHHHHHHHHHHHCCCCEE
Confidence 5666777776644 7889999999999976543 11 123445554 445788888899999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC----CHHHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV----DMADGRK 326 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~----di~~~~~ 326 (411)
++.|+.... +|+.+ +++.++++++++.++ ..+.+|+| |+.. .++.+.++|+|++++|... ++..+++
T Consensus 179 qidEP~l~~-~~~~~-~~~~~~l~~~~~~~~-----~~v~lH~C~G~~~~~~~~l~~~~vd~i~~d~~~~~~~~l~~~~~ 251 (330)
T PRK04326 179 QIDEPALAT-HPEDV-EIAVEALNRIVKGIN-----AKLGLHVCYGDYSRIAPYILEFPVDQFDLEFANGNYKLLDLLKE 251 (330)
T ss_pred EecCchhhc-CHHHH-HHHHHHHHHHHhCCC-----CEEEEEEeCCCcHHHHHHHHhCCCCEEEEEeCCCCchhHHHhhc
Confidence 999986653 67777 899999999999772 35789999 8877 5899999999999998755 7788877
Q ss_pred HhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC---CcHHHHHHHHHHHHhcCC
Q 015201 327 RLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG---TPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 327 ~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~---tp~Eni~a~~~a~~~yg~ 395 (411)
..+++..++|+||+... .+++|+|++.++++++.....+++++|+|+++.- ++.+|+++++++++++..
T Consensus 252 ~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~~~~~~~~~lsp~Cgl~~~~~~~a~~kl~~l~~~a~~~~~ 324 (330)
T PRK04326 252 YGFDKELGLGVIDVHSARVESVEEIKEAIKKGLEYVPPEKLYINPDCGLKLLPREIAYQKLVNMVKATREVRE 324 (330)
T ss_pred cCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 65567889999999765 6999999999999999655579999999999766 999999999999998764
|
|
| >PRK00957 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=170.00 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=149.5
Q ss_pred CceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CCC
Q 015201 185 EHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--GQL 262 (411)
Q Consensus 185 ~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~~i 262 (411)
++.++.+.+.||+|++..+.+ ++++.++ .+++. +..+++...+.++++.++|++.|++.|+.. ++.
T Consensus 106 ~~~~vK~~i~GP~Tla~~~~~-------~~~y~~~-~~~~~----~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~ 173 (305)
T PRK00957 106 PNKGVKGIITGPSTLAYSLRV-------EPFYSDN-KDEEL----IYDLARALRKEAEALEKAGVAMIQIDEPILSTGAY 173 (305)
T ss_pred CCCceeEEecCHHHHHhhccc-------ccccCCc-cHHHH----HHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCc
Confidence 567899999999999987653 1122222 33444 444577888888888899999999988743 355
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCC---CCCHHHHHH-HhCCCeeEEcc
Q 015201 263 PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDW---TVDMADGRK-RLGNDISVQGN 337 (411)
Q Consensus 263 Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~---~~di~~~~~-~~g~~~~l~G~ 337 (411)
++ +++.++++++.+.++ ..+.+|+||+.. .++.+.++|+|++++|. ..++..+++ ..+++..++|+
T Consensus 174 ~~----~~~~~~~~~~~~~i~-----~~v~lH~CG~~~~i~~~l~~~~vd~i~ld~~~~~~~l~~l~~~~~~~k~l~~Gv 244 (305)
T PRK00957 174 DL----EVAKKAIDIITKGLN-----VPVAMHVCGDVSNIIDDLLKFNVDILDHEFASNKKNLEILEEKDLIGKKIGFGC 244 (305)
T ss_pred hH----HHHHHHHHHHHHhhC-----CceEEEECCCcHHHHHHHHhCCCCEEEEeecCCCCCHHHHhhhccCCCEEEEEE
Confidence 54 577899999988773 357889999998 57999999999999986 447888874 34567899999
Q ss_pred CCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHhc
Q 015201 338 VDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKSM 393 (411)
Q Consensus 338 vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~y 393 (411)
||+... .+|+|+|++.+++.++..+..+++++|+|++..-+ +.+|+++|++++++|
T Consensus 245 Id~~~~~~e~~e~v~~~i~~~~~~~~~~~l~lsp~CGl~~~~~~~~~~kL~~l~~aa~~~ 304 (305)
T PRK00957 245 VDTKSKSVESVDEIKALIEEGIEILGAENILIDPDCGMRMLPRDVAFEKLKNMVEAAREI 304 (305)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEECCCcCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 999765 69999999999999998866789999999996544 899999999999986
|
|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=150.31 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=153.3
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecC-CCCCCCHH
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDS-WGGQLPPH 265 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~-~~~~iSp~ 265 (411)
.++.+.+.||+|++..+.+. ... .|.+ .+++++.+++.+.+.++++.++|++.|++.|+ ++.+++++
T Consensus 119 ~~lk~~l~GP~Tla~~~~~~------~~~---~y~~---~~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~ 186 (332)
T cd03311 119 KPLKGILTGPVTIPSPSFVR------FRG---YYPS---REELAMDLALALREEIRDLYDAGCRYIQIDEPALAEGLPLE 186 (332)
T ss_pred ccccccCCCCeeECCchhhc------ccc---cCCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhccCCcc
Confidence 56778889999999877641 111 2333 46799999999999999999999999999997 44577777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc----------c-cHhHHhcCCCcEEEcCCCC----CHHHHHHHhC
Q 015201 266 MWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG----------G-FLERMKGTGVDVIGLDWTV----DMADGRKRLG 329 (411)
Q Consensus 266 ~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~----------~-~l~~~~e~g~d~l~~d~~~----di~~~~~~~g 329 (411)
++++..++.+++++.+.+...+..+.+|+| |+. . .++.+.+.++|+++++... ++..+++...
T Consensus 187 -~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~ 265 (332)
T cd03311 187 -PDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYIFELDVDVFFLEYDNSRAGGLEPLKELPY 265 (332)
T ss_pred -cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCC
Confidence 899999999999999986433567899999 776 4 5799999999999987643 6788877555
Q ss_pred CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC---CcHHHHHHHHHHHH
Q 015201 330 NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG---TPEEAVAHFFEVGK 391 (411)
Q Consensus 330 ~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~---tp~Eni~a~~~a~~ 391 (411)
++..+.|.||+... ..|+|+|++.++++++..+...++++|+|+++.. .-...+++|.++++
T Consensus 266 ~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~~~~a~~kl~~~~~~~~ 331 (332)
T cd03311 266 DKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRERGNALTKLENMVKAAL 331 (332)
T ss_pred CCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCCCchhHHHHHHHHHHhh
Confidence 67889999999765 6999999999999999887667999999998643 34566666666553
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from |
| >cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=128.36 Aligned_cols=192 Identities=17% Similarity=0.109 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.++++.+++..++.+++.+.+.||||++..+.+. +. .|+..+++++.+++...++++++.++|++.|
T Consensus 102 ~~~~~~~~~~~~~~~~vk~~l~GP~Tla~~~~~~------~~-------~~~~~~~l~~~l~~~~~~~~~~l~~~G~~~i 168 (321)
T cd03310 102 LDYLEEVAEAYKEALKVKVVVTGPLTLALLAFLP------NG-------EPDAYEDLAKSLAEFLREQVKELKNRGIVVV 168 (321)
T ss_pred HHHHHHHHHhcCCCCceEEEecCHHhHhHhhccc------cC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 4566666666666678899999999999888762 11 1788899999999999999999999999999
Q ss_pred EEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCCCC-------HHH
Q 015201 253 QIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVD-------MAD 323 (411)
Q Consensus 253 ~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~d-------i~~ 323 (411)
++.|+..+ ..| .++..++.+++++.+++.. +..+.+|+||+ ..++.+.++|+|++++|.... +..
T Consensus 169 qidEP~l~~~~~s----~~~~~~~~~~~~~~~~~~~-~~~~~lHic~~-~~~~~l~~~~vd~l~~D~~~~~~~~~~~l~~ 242 (321)
T cd03310 169 QIDEPSLGAVGAG----AFEDLEIVDAALEEVSLKS-GGDVEVHLCAP-LDYEALLELGVDVIGFDAAALPSKYLEDLKK 242 (321)
T ss_pred EeCCCcccccccc----ccchHHHHHHHHHHHhhcc-CCceEEEECCC-CCHHHHHhCCCCEEEEecccCcccchhHHHH
Confidence 99998553 556 6778899999999997622 33468999999 667899999999999987543 344
Q ss_pred HHHHh-CCCeeEEccCCcC----ccCCCHHHHHHHHHHHHHHhC---CCCeEEeCCCCCCCCCcHHHHHH
Q 015201 324 GRKRL-GNDISVQGNVDPA----CLFSPLPALTDEIQRVVKCAG---SRGHILNLGHGVLVGTPEEAVAH 385 (411)
Q Consensus 324 ~~~~~-g~~~~l~G~vd~~----~L~gt~eeV~~ev~~~i~~~~---~~gfIls~gc~i~~~tp~Eni~a 385 (411)
+.+.. +++..-.|-+|.. .....+|.+ +...+.++..+ +...+++|+|++.. .|.+-.+.
T Consensus 243 ~~~~g~~~~~lg~gvid~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~vtpscgL~~-~p~~~a~~ 310 (321)
T cd03310 243 LLRIGVRTLILGLVVTDNEAKGRNAWKEIERL-EKLVRRLEEPGEVLDEILYLTPDCGLAF-LPPQEARR 310 (321)
T ss_pred HHhcCCceEEEEeeecCCcccCCCHHHHHHHH-HHHHHHhccchhhhhhceeeCCCccCCC-CCHHHHHH
Confidence 43422 3333445666773 111112233 44444454443 24699999999853 44443333
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o |
| >PRK01207 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=112.07 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=145.1
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVES------ 247 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~------ 247 (411)
+-++.+++.. +.|+-+.+.||+|++.+... ..|.+. .+++..++..+.+-++.+.++
T Consensus 108 ~e~~~a~~~t--~kpvK~~ltGP~Ti~~~S~~------------~~Y~~~---~el~~~iA~al~~Ev~~L~~a~~~~~~ 170 (343)
T PRK01207 108 DEVEFVADNT--KKPIKVPITGPYTMMDWSFN------------DFYRDR---YDLAMEFARIINEELKDIKSAWDRKSP 170 (343)
T ss_pred HHHHHHHHcc--CCCcEEEecCHHHHHHHhcc------------cccCCH---HHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3334444443 36789999999999987653 245555 355566777888888899999
Q ss_pred CCC-EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-C-Ccc-cHhHHhcCCCcEEEcCCCC----
Q 015201 248 GAH-CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-G-NGG-FLERMKGTGVDVIGLDWTV---- 319 (411)
Q Consensus 248 G~d-~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G-~~~-~l~~~~e~g~d~l~~d~~~---- 319 (411)
|++ .|++-+|.-. ....+.++....++..++.+. ..+.+|.| | +.. +++.+.++.+|+++++...
T Consensus 171 G~~~~IQiDEPal~--~~~~~l~~av~a~n~~~~gv~-----~~i~~H~C~g~~~~~i~~~i~~~~~d~~~~E~a~~~~~ 243 (343)
T PRK01207 171 GRKLEIQIDEPATT--THPDEMDIVVDSINKSVYGID-----NEFSIHVCYSSDYRLLYDRIPELNIDGYNLEYSNRDTL 243 (343)
T ss_pred CCceEEEEeCCCcC--CChHHHHHHHHHHHHHHhCCC-----CcEEEEEEcCCChHHHHHHHHhCCCCEEEEEeccCccc
Confidence 887 7999887543 234566777777777777774 24789999 7 455 5799999999999886531
Q ss_pred -------------CHHHHHHHh----CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhC-CCCeEEeCCCCC---CCC
Q 015201 320 -------------DMADGRKRL----GNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAG-SRGHILNLGHGV---LVG 377 (411)
Q Consensus 320 -------------di~~~~~~~----g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~-~~gfIls~gc~i---~~~ 377 (411)
++..+++.. .++..-.|-+|...- .-++|+|++.+++.++..+ +...+++|+|++ +..
T Consensus 244 ~~~~~~~~r~~~~~l~~~~~~~~~l~~~~~Ig~GV~D~~s~~vEs~e~I~~ri~~~l~~v~~~e~l~vnpDCGl~t~~~~ 323 (343)
T PRK01207 244 EPGTSDEKRPGFQDLKYFAEHNESLQRKKFIGLGVTDVHIDYVEPVKLIEDRIRYALKIIKDPELVRLNPDCGLRTRSRE 323 (343)
T ss_pred ccccccccccchhHHHHHHhhccccCCCCeEEeeEEeCCCCCCCCHHHHHHHHHHHHHhcCCcceEEEcCCCCCCcCCHH
Confidence 333343321 133456788999864 5899999999999999985 589999999997 456
Q ss_pred CcHHHHHHHHHHHHhcC
Q 015201 378 TPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 378 tp~Eni~a~~~a~~~yg 394 (411)
.-.+.+++|+++++++.
T Consensus 324 ~a~~KL~~mv~aa~~~r 340 (343)
T PRK01207 324 IGEQKLRNMVAAKNNIL 340 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66789999999999876
|
|
| >PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=107.00 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=139.5
Q ss_pred eEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-C-CCCHH
Q 015201 188 AVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-G-QLPPH 265 (411)
Q Consensus 188 ~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~-~iSp~ 265 (411)
++-..+.||+|++....+ ..|.+ ..+++..+++.+.+.++++.+ |++.|++-|+.- . -++ +
T Consensus 129 ~~K~vl~GP~T~~~~s~~------------~~Y~~---~e~l~~~~a~~l~~e~~~L~~-G~~~IQiDEP~L~~~~~~-~ 191 (326)
T PRK08575 129 KLKAVLPGPLTYAVLSDN------------EYYKN---LIELMEDYASVVNSLIKELSS-VVDAVEIHEPSIFAKGIK-R 191 (326)
T ss_pred CccEEEecHHHHHHHhcc------------ccCCC---HHHHHHHHHHHHHHHHHHHHc-CCCEEEecCcceeCCCCC-H
Confidence 567788999998864322 12333 356777888888888888888 999999999865 4 343 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc--ccHhHHhcCCCcEEEcCCC---CCHHHHHHHhCCCeeEEccCC
Q 015201 266 MWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG--GFLERMKGTGVDVIGLDWT---VDMADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 266 ~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~--~~l~~~~e~g~d~l~~d~~---~di~~~~~~~g~~~~l~G~vd 339 (411)
.+.+.....++++.+.+ +.++.+|.| |.. ..++.+.++++|++++|.. -++..+.+.+.++....|-||
T Consensus 192 ~~~~~~~~a~~~~~~~~-----~~~i~l~tyfg~~~~~~~~~l~~~~vd~l~ld~~~~~~~l~~~~~~~~~k~l~~GviD 266 (326)
T PRK08575 192 DTLEKLPEVYKTMAKNV-----NIEKHLMTYFEINNLKRLDILFSLPVTYFGIDVIENLKKLGRVYTYLKGRKVYLGILN 266 (326)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCEEEECCCCCccccHHHHHhcCCCcEEEEEecCChhHHHHHHhhCCCCEEEEEEEe
Confidence 46677777888887766 246889999 752 3579999999999998752 246667665656667789999
Q ss_pred cCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHHHHHHHHHHHHhc
Q 015201 340 PACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 340 ~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~Eni~a~~~a~~~y 393 (411)
-..- .-|+|+|++.+++.++ .++...+++|+|++ |..+-.+++++|+++ ++.
T Consensus 267 ~rn~~vE~~eev~~~i~~~~~-~~~~~l~v~pdcgl~~lp~~~a~~KL~~l~~~-~~~ 322 (326)
T PRK08575 267 ARNTKMEKISTIRRIVNKVKR-KGVSDIIVGNNTLFDFIPEVVAVKKLKLLGKL-EKL 322 (326)
T ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCeEEEeCCCCcccCcHHHHHHHHHHHHHH-Hhh
Confidence 9764 5899999999999999 66689999999996 567778999999988 554
|
|
| >PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=106.71 Aligned_cols=197 Identities=11% Similarity=0.147 Sum_probs=137.5
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +.++-+++.||.+++..+.. ..|.+. .+++.-+++.+.+.++++.++|++.|+
T Consensus 112 ~~~~~~~~~~--~~~vK~~ipgP~tl~~~~~~------------~~Y~~~---~el~~dlA~al~~Ei~~L~~aG~~~IQ 174 (339)
T PRK09121 112 EDAKFLRQQT--TQPIKWALPGPMTMIDTLYD------------DHYKSR---EKLAWEFAKILNQEAKELEAAGVDIIQ 174 (339)
T ss_pred HHHHHHHhcc--CCCceEEeCcHHHHHHHhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3444455443 24578889999999865542 235554 456677777888889999999999999
Q ss_pred EecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc------------------c-cHhHHhcCCCcE
Q 015201 254 IFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG------------------G-FLERMKGTGVDV 312 (411)
Q Consensus 254 i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~------------------~-~l~~~~e~g~d~ 312 (411)
+-|+.-+ +.+ ...++....+.++++.+ ..++.+|+| |+. . .++.+.++++|.
T Consensus 175 iDeP~l~~~~~--~~~~~~v~~~n~~~~g~-----~~~v~~HvC~G~~~~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~ 247 (339)
T PRK09121 175 FDEPAFNVFFD--EVNDWGVAALERAIEGL-----KCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPKLQKSNIDI 247 (339)
T ss_pred ecccHHhhhhH--HHHHHHHHHHHHHHcCC-----CCceEEEEeCCCCCCCccccccccccccccHHHHHHHHHhCCCCE
Confidence 9887443 332 22333333334444333 245788999 753 2 358888999999
Q ss_pred EEcCCCCC--HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHH
Q 015201 313 IGLDWTVD--MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHF 386 (411)
Q Consensus 313 l~~d~~~d--i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~ 386 (411)
+.++...+ -.+..+.+.++....|-||...- .-++|+|++.+++.++..+....+++|+|++.. ..-.+++++|
T Consensus 248 ~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~~l~~~~a~~KL~~l 327 (339)
T PRK09121 248 ISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKALQFVDADKLYPCTNCGMAPLSRDVARGKLNAL 327 (339)
T ss_pred EEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEEECCCCCCCcCCHHHHHHHHHHH
Confidence 98864321 12333444556677899999864 589999999999999998768999999999753 4457899999
Q ss_pred HHHHHhcC
Q 015201 387 FEVGKSMK 394 (411)
Q Consensus 387 ~~a~~~yg 394 (411)
+++++...
T Consensus 328 ~~~a~~~~ 335 (339)
T PRK09121 328 SAGAEIVR 335 (339)
T ss_pred HHHHHHHH
Confidence 99888765
|
|
| >PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-09 Score=99.54 Aligned_cols=208 Identities=14% Similarity=0.097 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 015201 170 QFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGA 249 (411)
Q Consensus 170 ~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~ 249 (411)
..+-+..+..+++.|...++-+.+.||+|++.+..++ . .|.+- .+.+..-+..++.+.++.+.++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~VKv~iTGP~tL~~~~f~~-------~----~Y~d~--~~~la~~ia~~l~~e~~~l~~~gv 160 (344)
T PRK06052 94 EAIEEVAKEYKEETGETLEVRVCVTGPTELYLQEFGG-------T----IYTDI--LLILAKSVERFVENAIKSAKNFKI 160 (344)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEecCHHHHHHHHcCC-------c----cccch--HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444555667888888888999999999999999873 1 12221 245666677777788888889999
Q ss_pred CEEEEecCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccH-hHHhcCC-CcEEEcCCCC---CHHH
Q 015201 250 HCIQIFDSWGGQLPP-HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFL-ERMKGTG-VDVIGLDWTV---DMAD 323 (411)
Q Consensus 250 d~i~i~D~~~~~iSp-~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l-~~~~e~g-~d~l~~d~~~---di~~ 323 (411)
+.|++-+|.-+.-.+ ....+.+...+..+...+...|-++++.+|+ .++ +.+.+++ +|+++++... ++.-
T Consensus 161 ~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a~~~a~~~gvdv~i~lH~----~l~~~~i~~~~~idvi~~E~A~~~~~L~~ 236 (344)
T PRK06052 161 KTISIDEPSLGINPEIQFSDDEIISALTVASTYARKQGADVEIHLHS----PLYYELICETPGINVIGVESAATPSYLDL 236 (344)
T ss_pred CEEEecCcccccCCccccCHHHHHHHHHHHHhhhccCCcceEEEEeh----HhhHHHHhcCCCCCEEeeeccCChHHHHH
Confidence 999999986652111 1122444444444433333222245556677 456 8889998 9999986532 4444
Q ss_pred HHHH----hCCCeeEEccCCc--C------------------------c-cCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 324 GRKR----LGNDISVQGNVDP--A------------------------C-LFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 324 ~~~~----~g~~~~l~G~vd~--~------------------------~-L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
+.+. + ++..-.|-+|. . . -.-|+|||.+.+++.++...+..+.++|+|
T Consensus 237 l~~~~~e~~-dk~ig~GV~dtd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDC 315 (344)
T PRK06052 237 IDKKVLEDT-DTFLRVGVARTDIFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDC 315 (344)
T ss_pred Hhhhhhhhc-CCceEEeEEEchhhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCC
Confidence 4443 3 34555688887 3 1 126899999999999999988999999999
Q ss_pred CCCC----CCcHHHHHHHHHHHHhcCC
Q 015201 373 GVLV----GTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 373 ~i~~----~tp~Eni~a~~~a~~~yg~ 395 (411)
|+-. ....+.++.|+++++.+..
T Consensus 316 GLK~~~e~~~A~~KL~nmv~aa~~~r~ 342 (344)
T PRK06052 316 GLGSWPSQELAFRLLENVAKAINEFRA 342 (344)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 9852 3346889999999988764
|
|
| >PRK06233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=105.71 Aligned_cols=210 Identities=15% Similarity=0.061 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
++..+.+++..++..++..++.||.+++..... ......|.+. ++++.-+++.+.+.++++.++|++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~K~tipgP~~l~~~~~~--------~~~~~~Y~~~---eel~~dlA~a~~~Ei~~L~~aG~~~I 188 (372)
T PRK06233 120 FAAFKYLKSIVPEGVLPKQTIPSPSLLFRDNRS--------DNWPKFYDSW---DDYLDDLAQAYHDTIQHFYDLGARYI 188 (372)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcHHhccCccc--------ccccccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 355566666544455678889999988731110 1112356555 46778888888899999999999999
Q ss_pred EEecCC-CCCCC--------H---HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-----------cHhHHhcC
Q 015201 253 QIFDSW-GGQLP--------P---HMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-----------FLERMKGT 308 (411)
Q Consensus 253 ~i~D~~-~~~iS--------p---~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-----------~l~~~~e~ 308 (411)
++-|+. +.+.+ | +.+.++...+.+-+-..++..-.+..+.+|.| ||.. .++.+.++
T Consensus 189 QiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~p~d~~i~~H~C~Gn~~~~~~~~g~y~~i~~~l~~~ 268 (372)
T PRK06233 189 QLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALADLPEDLTVTTHICRGNFKSTYLFSGGYEPVAKYLGQL 268 (372)
T ss_pred EEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHhCCCcCCEEEEEeeCCCCCCcccccCcHHHHHHHHHhC
Confidence 999874 32222 1 12444444444333333432211445788999 8763 35888999
Q ss_pred CCcEEEcCCCC----CHHHHHHHhC---CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-----
Q 015201 309 GVDVIGLDWTV----DMADGRKRLG---NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL----- 375 (411)
Q Consensus 309 g~d~l~~d~~~----di~~~~~~~g---~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~----- 375 (411)
++|.+.++... ++.-+++... ++.+..|-||...- .-++|+|++.+++.++......++++|+|++.
T Consensus 269 ~vd~~~lE~~~~r~~~~~~L~~~~~~~~~k~v~lGvid~~~~~vE~~e~I~~rI~~a~~~v~~e~l~lspdCGf~s~~~g 348 (372)
T PRK06233 269 NYDGFFLEYDNDRSGSFEPLKQIWNNRDNVRIVLGLITSKFPELEDEDEIIARIDEATEYVPLSNLALSTQCGFASTEEG 348 (372)
T ss_pred CCCEEEEecCCCccCccchHHHhhccCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHHHhCCHHHEEecCCCCCcccccc
Confidence 99999886532 3444444432 46678899999864 58999999999999998866899999999976
Q ss_pred ----CCCcHHHHHHHHHHHHhc
Q 015201 376 ----VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 376 ----~~tp~Eni~a~~~a~~~y 393 (411)
...-.++++.|.+.+++.
T Consensus 349 ~~l~~~~~~~KL~~l~~~a~~~ 370 (372)
T PRK06233 349 NILTEADQWAKLALVKKIADKV 370 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 233457888888888764
|
|
| >PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=102.37 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=134.7
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +..++..++.||.+++....+. ......|.+. .+++.-+++...+.++++.++|++.|+
T Consensus 120 ~~~~~l~~~~-~~~~~K~~ipgP~~l~~~~~~~-------~~~~~~Y~~~---~~~~~dlA~al~~Ei~~L~~aG~~~IQ 188 (368)
T PRK06520 120 EDFRFLKSIS-GDATPKMTIPSPSVLHFRGGRK-------AIDATVYPDL---DDYFDDLAKTWRDAIKAFYDAGCRYLQ 188 (368)
T ss_pred HHHHHHHhhc-cCCCCCEEcCcHHHHHhhcccc-------ccchhcCCCH---HHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4455555543 3345678899999988442210 0112356665 466777888888899999999999999
Q ss_pred EecCC-CCCCCHHHHHHH---------HHHHHHHHHHHHHhhCC-CCCEEEEec-CCcc-----------cHhHH-hcCC
Q 015201 254 IFDSW-GGQLPPHMWEQW---------SEPYIREIVSLVRTKCP-ETPIVLYIN-GNGG-----------FLERM-KGTG 309 (411)
Q Consensus 254 i~D~~-~~~iSp~~f~ef---------~~Py~k~i~~~i~~~~~-g~~~~~H~C-G~~~-----------~l~~~-~e~g 309 (411)
+-|+. +.++++++...+ ....+.++++.+-+.-| +..+.+|+| |+.. .++.+ .+++
T Consensus 189 iDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~p~d~~v~~HiC~Gn~~~~~~~~~~y~~i~~~L~~~~~ 268 (368)
T PRK06520 189 LDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALAGKPADLTIGLHVCRGNFRSTWISEGGYEPVAETLFGGVN 268 (368)
T ss_pred ecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEeecCCCCCccccccchhHHHHHHHhhcC
Confidence 99874 456665432111 11111133333222111 344677999 8852 35774 5799
Q ss_pred CcEEEcCCCCC----HHHHH--HHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC------
Q 015201 310 VDVIGLDWTVD----MADGR--KRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV------ 376 (411)
Q Consensus 310 ~d~l~~d~~~d----i~~~~--~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~------ 376 (411)
+|.+.++...+ +..++ .. +++.+..|-||...- .-++|+|++.+++.++.......+++|+|++..
T Consensus 269 vd~~~lE~~~~r~g~~e~L~~l~~-~~k~v~lGvvd~~~~~vE~~e~I~~rI~~a~~~v~~~~l~lspdCGf~s~~~~~~ 347 (368)
T PRK06520 269 VDAFFLEYDNERAGGFEPLRFIPP-GHQQVVLGLITTKNGELENADDVKARLAEAAKFVPLEQLCLSPQCGFASTEEGNS 347 (368)
T ss_pred CCeEEEEeccCCCCCcchHHHhhh-cCCEEEeeEEeCCCCCCCCHHHHHHHHHHHHHhCCHHHEeeCcccCCCccccCCC
Confidence 99998764321 22222 22 235677899999864 589999999999999998767899999999762
Q ss_pred ---CCcHHHHHHHHHHHHh
Q 015201 377 ---GTPEEAVAHFFEVGKS 392 (411)
Q Consensus 377 ---~tp~Eni~a~~~a~~~ 392 (411)
..-.++++.|.+++++
T Consensus 348 l~~~~~~~KL~~l~~~a~~ 366 (368)
T PRK06520 348 LSEEQQWAKLRLVVEIANE 366 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3345778888888876
|
|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=109.12 Aligned_cols=200 Identities=16% Similarity=0.199 Sum_probs=143.8
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++.. +.++-+++.||.|++.+... +.+ .+ -.+++..++..+.+.++.+.++|++.|+
T Consensus 537 ~~~~~aq~~t--~~~vK~~ltGP~T~~~~s~~----r~~--------~~---~~e~~~dlA~al~~Ev~~L~~aG~~~IQ 599 (758)
T PRK05222 537 EWIKYAQSLT--DKPVKGMLTGPVTILNWSFV----RDD--------QP---REETARQIALAIRDEVLDLEAAGIKIIQ 599 (758)
T ss_pred HHHHHHHhcc--CCCCcEEEecHHHHHHHHhc----ccC--------CC---HHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3344444433 24688899999998865432 100 11 2566777888888889999999999999
Q ss_pred EecCCC--CC----CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CC-H
Q 015201 254 IFDSWG--GQ----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VD-M 321 (411)
Q Consensus 254 i~D~~~--~~----iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~d-i 321 (411)
+-|+.- ++ ...+.|.++....++..++.+.. +..+.+|.| |+.. +++.+.++++|+++++.. ++ +
T Consensus 600 iDEPal~e~~~~~~~~~~~~l~~~v~a~n~a~~~~~~---~~~i~tH~C~g~~~~i~~~i~~l~vD~~~lE~~rs~~e~L 676 (758)
T PRK05222 600 IDEPALREGLPLRRSDWDAYLDWAVEAFRLATSGVKD---ETQIHTHMCYSEFNDIIDAIAALDADVISIETSRSDMELL 676 (758)
T ss_pred eeCchhhhcCcccccCHHHHHHHHHHHHHHHHcCCCC---CCEEEEEEeccChHHHHHHHHhCCCCEEEEEecCCCchhH
Confidence 998743 22 23556777776666666665542 355789999 8877 679999999999998753 22 2
Q ss_pred HHHHHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHHhcC
Q 015201 322 ADGRKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 322 ~~~~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~~~a~~~yg 394 (411)
..+.+ .+ ++....|-+|...- .-++|+|++.+++.++......++++|+||+-. ..-...++.|++++++..
T Consensus 677 ~~~~~-~~~~~~iglGVvd~~s~~ves~eei~~rI~~a~~~v~~e~l~v~PdCGl~t~~~~~~~~kL~~mv~aa~~~r 753 (758)
T PRK05222 677 DAFED-FGYPNEIGPGVYDIHSPRVPSVEEIEELLRKALEVIPAERLWVNPDCGLKTRGWEETIAALKNMVAAAKELR 753 (758)
T ss_pred HHhhc-cCCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHhCChheEEEeCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33322 22 34577899999865 589999999999999998778999999999853 444678888999998875
|
|
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=106.27 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=140.4
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--CC---
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--GQ--- 261 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~~--- 261 (411)
.|+-+++.||.|++.+..- +. +. + -++++.-++..+.+.++.+.++|++.|++-|+.- ++
T Consensus 553 ~~vK~~ltGP~Ti~~~s~~----r~--------~~-~--~~e~~~~iA~alr~Ev~~L~~aG~~~IQIDEPal~e~~~~~ 617 (766)
T PLN02475 553 RPMKGMLTGPVTILNWSFV----RN--------DQ-P--RHETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLR 617 (766)
T ss_pred CccceEEecHHHHHhhhhc----cc--------CC-C--HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcchhhcCCcC
Confidence 4788999999998865432 10 11 1 3567778888888889999999999999998743 21
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-C---HHHHHHHhC-CCee
Q 015201 262 -LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-D---MADGRKRLG-NDIS 333 (411)
Q Consensus 262 -iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-d---i~~~~~~~g-~~~~ 333 (411)
...+.|.+++...++...+.++. +..+.+|+| |+.. +++.+.++.+|+++++..- + +..+++.++ ++.+
T Consensus 618 ~~~~~~~l~~av~af~~~~~~v~~---~~~I~~H~C~gnf~~I~~~i~~l~~D~~~~E~~rs~~~~l~~l~~~~~~~~~I 694 (766)
T PLN02475 618 KSEHAFYLDWAVHSFRITNCGVQD---TTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 694 (766)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCC---CCEEEEEEecCCcHHHHHHHHhCCCCEEEEEcCCCChhhhHHHHhhcCCCCeE
Confidence 23445666665555555555542 345788999 8877 6799999999999987532 2 455545232 3456
Q ss_pred EEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHHhcCC
Q 015201 334 VQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 334 l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~~~a~~~yg~ 395 (411)
..|-+|...- .-++|+|++.+++.++..+...++++|+||+-. ..-.+.++.|+++++....
T Consensus 695 glGViD~~s~~ves~Eei~~rI~~a~~~v~~e~l~vnPDCGl~tr~~~~~~~kL~~mv~aa~~~r~ 760 (766)
T PLN02475 695 GPGVYDIHSPRIPSTEEIADRINKMLAVLESNILWVNPDCGLKTRKYPEVKPALKNMVAAAKLLRA 760 (766)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCCcceEEEcCCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999865 589999999999999999778999999999853 3445788899999988763
|
|
| >cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-08 Score=96.09 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
.++..+.+++. + .++-.++.||+|++..... + .-|.++ .++++.++....+.++.+.++|++.
T Consensus 136 ~l~~~~~a~~~-~--~~~K~~i~GP~T~~~ls~~-------~----~~Y~~~---~el~~dla~~y~~el~~L~~aG~~~ 198 (360)
T cd03312 136 LLDEYLEAKAL-G--INTKPVLLGPVTFLKLSKA-------K----GGGFDR---LSLLDKLLPVYKELLKKLAAAGAEW 198 (360)
T ss_pred HHHHHHHHHhc-C--CCCcEEEECHHHHHHHhcc-------c----ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 34444545443 3 4567788899999844321 0 003333 4667778888888889999999999
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHHH
Q 015201 252 IQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADGR 325 (411)
Q Consensus 252 i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~~ 325 (411)
|++-|+.- ..++.+ +.+.+ ++.++.+.+..|+..+.+|.| |+.. .++.+.++++|++++|.. -++..++
T Consensus 199 IQiDEP~l~~~~~~~-~~~~~----~~~~~~l~~~~~~~~l~l~tyfg~~~~~~~~l~~l~Vd~l~le~~~~~~~l~~l~ 273 (360)
T cd03312 199 VQIDEPALVLDLPEE-WLAAF----KRAYEELAKAAPGLKLLLATYFGSLGENLDLLASLPVDGLHLDLVRGPENLEAVL 273 (360)
T ss_pred EEeeCChhhcCCCHH-HHHHH----HHHHHHHhcCCCCCcEEEEecccchHHHHHHHHcCCCCEEEEEecCCcccHHHHH
Confidence 99999754 456543 33433 444444443222456899999 8776 578899999999998653 3577776
Q ss_pred HHh-CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 326 KRL-GNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 326 ~~~-g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
+.. .++....|-||.... .-++|++.+.++++.+.. ...++++|+|++ |.++..|
T Consensus 274 ~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~l~lsp~CgL~~lP~~~~~e 333 (360)
T cd03312 274 KAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDRLVVSPSCSLLHVPVDLENE 333 (360)
T ss_pred hcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCcEEEECCCCCcCCCcccccc
Confidence 633 467788899999764 589999999999999977 668999999996 5454333
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro |
| >PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=97.60 Aligned_cols=189 Identities=19% Similarity=0.154 Sum_probs=123.1
Q ss_pred eEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHH
Q 015201 188 AVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQLPPHM 266 (411)
Q Consensus 188 ~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~ 266 (411)
++.+.+.||++++..... + +.....+++.-+.+...+.++++.++|+..|++-|+.- +.++...
T Consensus 122 ~vK~~i~gP~tl~~~~~~----~-----------~y~~~~~~~~dla~a~~~ei~~l~~~G~~~iQiDeP~l~~~~~~~~ 186 (324)
T PF01717_consen 122 PVKGTITGPSTLADPSAN----R-----------YYKDREELLEDLAEAYREEIRALYDAGCRYIQIDEPALSEGPPDAS 186 (324)
T ss_dssp SBEEEEE-HHHHHHTSEE----S-----------SSS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETCHHCTSCSSH
T ss_pred ccccccCHHHHhhchhcc----c-----------cCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEecchHhhcchhhhc
Confidence 367788999998876543 1 11123456666777778888899999999999999843 2222111
Q ss_pred ---HHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCC----CCHHHHHHHhCCCeeEEcc
Q 015201 267 ---WEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWT----VDMADGRKRLGNDISVQGN 337 (411)
Q Consensus 267 ---f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~----~di~~~~~~~g~~~~l~G~ 337 (411)
-+.+-.....+.++.+-+. .+.++.+|+|+... .++.+.++++|+++++.. .+++-+++.-.++....|-
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~H~C~~~~~~~~~~l~~~~vd~~~lE~~~~~~~~l~~l~~~~~~k~v~lGv 265 (324)
T PF01717_consen 187 FDRDEYLDEAVAAEALNRAVKG-EDATVGVHVCRGNYPSILPLLADLNVDAFFLEFADRRAGDLEPLRELPSGKKVVLGV 265 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST-TTSEEEEEESSSCHCTTHHHHHCSS-SEEEEEETSSTTGGGHHCHCTTTTSEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhccCC-CCCEEEEEecCccchhhHHHHhhcccceEEeecccCCcccHHHHHhCcCCceEEEEE
Confidence 1111111223444433222 36778999997754 358999999999987532 2566666633456778899
Q ss_pred CCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHh
Q 015201 338 VDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKS 392 (411)
Q Consensus 338 vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~ 392 (411)
||+..- .-++|+|.+.+++.++.......+++|+||+..-+ -.+.++.|+++++|
T Consensus 266 v~~~~~~vE~~e~v~~ri~~a~~~~~~~~l~~sPdCGfa~~~~~~a~~kL~~~v~aa~~ 324 (324)
T PF01717_consen 266 VDTKSPEVESPEEVADRIEEALEYVPLEQLWLSPDCGFASLTREEARAKLRNMVEAARE 324 (324)
T ss_dssp S-TTSSS--THHHHHHHHHHHHTTS-GGGEEEEESSTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCcCCHHHHHHHHHHHHhcCccccEEEcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 998764 47999999999999998766899999999997543 33567778888875
|
1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B .... |
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=102.72 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=130.8
Q ss_pred ceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CC--
Q 015201 186 HAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QL-- 262 (411)
Q Consensus 186 ~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~i-- 262 (411)
+.++-+++.||.|++.+..- + .+ ..-.++++.++....+.++.+.++|++.|++-|+.-. .+
T Consensus 541 ~~~vK~~LtGPvT~l~~s~~----r----------~d-~~~~~~~~~la~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~ 605 (750)
T TIGR01371 541 SKPVKGMLTGPVTILNWSFV----R----------DD-IPRKEIAYQIALAIRDEVLDLEEAGIKIIQIDEPALREGLPL 605 (750)
T ss_pred CCCCceEEechHHHHhhhhh----c----------cC-CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhhhcCCc
Confidence 35688899999998754321 0 01 1125677788888888889999999999999987432 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-C---HHHHHH--HhCCCeeE
Q 015201 263 PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-D---MADGRK--RLGNDISV 334 (411)
Q Consensus 263 Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-d---i~~~~~--~~g~~~~l 334 (411)
..+.+.++..-.++.+-..+.....+..+.+|+| |+.. +++.+.++++|++++|... + +..+.+ .++. -..
T Consensus 606 ~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i~~~l~~l~vD~i~lE~~r~~~e~L~~~~~~~~~~~-~ig 684 (750)
T TIGR01371 606 RKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEIIESIADLDADVISIEASRSDMELLSAFKNGFGYPN-GIG 684 (750)
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHHHHHHHhCCCCEEEEEecCCChhHHHHhhhhcccCC-eEE
Confidence 2234444433333333222221111345789999 6766 6799999999999987532 2 333333 2333 366
Q ss_pred EccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC---cHHHHHHHHHHHHhcC
Q 015201 335 QGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT---PEEAVAHFFEVGKSMK 394 (411)
Q Consensus 335 ~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t---p~Eni~a~~~a~~~yg 394 (411)
.|-+|.... .-++|++.+.+++.++.......+++|+|++-.-. -...++.|++++++..
T Consensus 685 ~GVvD~~s~~ve~~eei~~~i~~a~~~i~~erl~vsPdCGL~tr~~~~~~~~L~~mv~aa~~~r 748 (750)
T TIGR01371 685 PGVYDIHSPRVPSVEEMADLIEKALQVLPAERLWVNPDCGLKTRNWEEVIASLKNMVEAAKEAR 748 (750)
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHhcCcceEEEeCCCCCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 788998765 47899999999999998866789999999986433 3456777888888765
|
This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717. |
| >COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=92.71 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.9
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCH-
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPP- 264 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp- 264 (411)
.|+.+.+.||.|++.+-.+ ..+..+ +++...++.++.+.++.+.++|+..|++.++.-+ .+..
T Consensus 125 ~~~K~~ltGP~ti~~~s~~------------~~~~~~---~el~~~iA~al~~ev~~l~~agi~~iQiDEpal~~~~~~~ 189 (330)
T COG0620 125 KPVKGMLTGPVTILLWSFN------------RYYISR---EELAKDIALALRDEVKDLEDAGIKIIQIDEPALREGLPLR 189 (330)
T ss_pred ccceeeeccHHhhHhhhcc------------ccCCCH---HHHHHHHHHHHHHHHHHHHHcCCCEEeechhhhhcCCccc
Confidence 7788899999997766443 122233 5677777888888899999999999999886332 1111
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c-cHhHHhcCCCcEEEcCCC---CC-HHHHHHHhCCCeeEEc
Q 015201 265 --HMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G-FLERMKGTGVDVIGLDWT---VD-MADGRKRLGNDISVQG 336 (411)
Q Consensus 265 --~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~-~l~~~~e~g~d~l~~d~~---~d-i~~~~~~~g~~~~l~G 336 (411)
+.|.+.+...++..++... .+.-+.+|+|... . .++.+..+.+|+++++.. ++ +..+.+.-.++-.-.|
T Consensus 190 ~~~~~l~~~~~~~~~~~~~~~---~d~~i~~HiCy~e~~~~~~~i~~ld~dv~~~e~~~s~~~~~~~~~~~~~~~~Ig~G 266 (330)
T COG0620 190 RDDDYLEWAVEAINLAAAGVG---ADTQIHLHICYSEFNDIPDAIEALDADVIDIETSRSRMELLEVLEEVKYDKEIGLG 266 (330)
T ss_pred cchHHHHHHHHHHHHHHhcCC---CCcEEEEEEECCcccchhHHHhhcCCcEEeeeccccccchhHHHHhccCCCeeecc
Confidence 3456666655555555443 2566788999663 4 468888899999987543 33 3333333234555668
Q ss_pred cCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHHHHHHHHHHHHhcC
Q 015201 337 NVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 337 ~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~Eni~a~~~a~~~yg 394 (411)
-+|...- .-++++|.+.+++.++......++++|+|++ |...-.+.++.|+++++...
T Consensus 267 v~d~~~~~ve~~eei~~~i~k~~~~~~~e~~~vnPDCGl~~~~~~~a~~kL~nmv~a~~~~r 328 (330)
T COG0620 267 VVDIHSPKVESVEEIAARIRKALERVPPERLYVNPDCGLKTLPREIAEAKLENMVKAAKEIR 328 (330)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhCChheEEEcCCCCcccCcHHHHHHHHHHHHHHHHHHh
Confidence 8888765 4789999999999999998889999999997 44566778888998888754
|
|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.2e-07 Score=96.41 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
.++.++..++ .| .++-..+.||+|++..... + . -+.++ .++++.++....+.++.+.++|++.
T Consensus 132 ~~~e~~~A~~-~g--~~~Kpvl~GP~T~l~lsk~----~---~----~y~~~---~~ll~~L~~~y~~~l~~L~~~G~~~ 194 (750)
T TIGR01371 132 PLEEYLEAKE-LG--IETKPVLLGPITFLKLSKA----V---E----EPFEP---LSLLEKLLPVYKEVLKKLAEAGATW 194 (750)
T ss_pred HHHHHHHHHh-cC--CCCeEEEECHHHHHHHhCc----c---C----CCCCH---HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 3444444443 23 4566778899998876431 0 0 13344 4667777788888888999999999
Q ss_pred EEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHHH
Q 015201 252 IQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADGR 325 (411)
Q Consensus 252 i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~~ 325 (411)
|++-+|.-. -++++ +.+.+...++++.+.+. +.++++|+| |+.. .++.+.++++|++++|.. .++..+.
T Consensus 195 IQiDEP~L~~d~~~~-~~~~~~~ay~~l~~~~~----~~ki~l~tyFg~~~~~~~~l~~lpvd~l~lD~v~~~~~L~~~~ 269 (750)
T TIGR01371 195 VQIDEPALVTDLSKE-DLAAFKEAYTELSEALS----GLKLLLQTYFDSVGDALEALVSLPVKGIGLDFVHGKGTLELVK 269 (750)
T ss_pred EEeeCchhcCCCCHH-HHHHHHHHHHHHHhccC----CceEEEECCCCchHHHHHHHHcCCCCEEEEEeccCcccHHHHH
Confidence 999998653 34443 55656666666655442 356789999 8877 589999999999998753 3566554
Q ss_pred HHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 326 KRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 326 ~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
..++ ++....|-||-... ..+++++.+.++++++.. + ..+++|+|++ |.++..|
T Consensus 270 ~~~~~~k~L~~GVIDgrniw~~d~~~~~~~l~~~~~~~-~-~l~v~psCsLlhvP~~~~~e 328 (750)
T TIGR01371 270 AGFPEDKVLSAGVIDGRNIWRNDLEASLSLLKKLLAHV-G-KLVVSTSCSLLHVPVDLELE 328 (750)
T ss_pred hcCCCCCeEEEEEEeccccccCCHHHHHHHHHHHHhhC-C-CEEEeCCCCcccCCccCccc
Confidence 3344 56777899999765 689999999999999953 3 5999999996 5554444
|
This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717. |
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=94.61 Aligned_cols=173 Identities=15% Similarity=0.094 Sum_probs=127.1
Q ss_pred cccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHH
Q 015201 193 VGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWS 271 (411)
Q Consensus 193 ~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~ 271 (411)
+.||+|++...... . ..+++ ..-.++++.++....+.++.+.++|++.|++-+|.-. -+++ .+.+.+
T Consensus 155 l~GP~T~l~Lsk~~---~-------~~~~~-~~~~~ll~~L~~~y~~~l~~L~~~Gv~~IQiDEP~L~~d~~~-~~~~~~ 222 (766)
T PLN02475 155 LVGPVSYLLLSKPA---K-------GVDKS-FDLLSLLDKILPVYKEVIAELKAAGASWIQFDEPALVMDLES-HKLQAF 222 (766)
T ss_pred EECHHHHHHHhccc---c-------cccCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhcCCCH-HHHHHH
Confidence 67999988764420 0 01111 1124677778888888889999999999999998653 3444 567777
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCC-CcEEEcCCC---CCHHHHHHH-hC-CCeeEEccCCcCc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTG-VDVIGLDWT---VDMADGRKR-LG-NDISVQGNVDPAC 342 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g-~d~l~~d~~---~di~~~~~~-~g-~~~~l~G~vd~~~ 342 (411)
...++++.+.+. +.++.+|+| |+.. .++.+.+++ +|++++|.. .++..+++. ++ ++....|-||-..
T Consensus 223 ~~ay~~l~~~~~----~~~i~l~TyFg~~~~~~~~~l~~lp~Vd~l~lD~v~~~~~L~~l~~~~~p~~k~L~~GVVDgRN 298 (766)
T PLN02475 223 KTAYAELESTLS----GLNVLVETYFADVPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLIKKAGFPSGKYLFAGVVDGRN 298 (766)
T ss_pred HHHHHHHHhccC----CCeEEEEccCCCCCHHHHHHHHcCCCCCEEEEEecCChhhHHHHHhccCCCCCeEEEEEEeCCC
Confidence 788888776553 357899999 8876 489999999 999998753 356666443 44 5667789999976
Q ss_pred c-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCCcHH
Q 015201 343 L-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGTPEE 381 (411)
Q Consensus 343 L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~tp~E 381 (411)
. ..+.+++.+.++++++..++.+++++|+|++ |.+...|
T Consensus 299 iw~~dl~~~~~~i~~~~~~~~~~~l~v~psCsLlhvP~~~~~e 341 (766)
T PLN02475 299 IWANDLAASLATLQALEGIVGKDKLVVSTSCSLLHTAVDLVNE 341 (766)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEeCCCCCccCCcccccc
Confidence 5 5899999999999999876568999999996 5444333
|
|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-06 Score=90.96 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..++..+.+++. + .++-.++.||+|++..... . .-+.++ .++++.+.....+.++.+.++|++
T Consensus 137 ~~l~e~~~ak~~-g--~~~K~vl~GP~T~l~ls~~--------~---~~~~~~---~ell~dl~~~y~~~l~~L~~aG~~ 199 (758)
T PRK05222 137 KLLDEFEEAKAL-G--INTKPVLLGPVTFLWLSKS--------K---GEGFDR---LDLLDDLLPVYAELLAELAAAGAE 199 (758)
T ss_pred cHHHHHHHHHhC-C--CCceEEEccHHHHHHHhcc--------c---ccCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344555555554 3 4567788999999843321 0 011223 466777888888889999999999
Q ss_pred EEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHH
Q 015201 251 CIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADG 324 (411)
Q Consensus 251 ~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~ 324 (411)
.|++-|+.- ..++++ +.+.+...++++.+.. ++..+.+|+| |+.. .++.+.++++|++++|.. .++..+
T Consensus 200 ~IQiDEP~l~~~~~~~-~~~~~~~~y~~l~~~~----~~~~i~l~tyfg~~~~~~~~l~~l~Vd~l~LD~~~~~~~l~~l 274 (758)
T PRK05222 200 WVQIDEPALVLDLPQE-WLEAFKRAYEALAAAK----PRPKLLLATYFGSLNDALDLLASLPVDGLHLDLVRGPEQLAAL 274 (758)
T ss_pred EEEeeCchhhcCCCHH-HHHHHHHHHHHHhcCC----CCCCEEEEeeccchhhHHHHHHcCCCCEEEEEeeCCccchHHH
Confidence 999999754 456654 4454555555555421 1346889999 7765 579999999999998642 367777
Q ss_pred HHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 325 RKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 325 ~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
++.++ ++....|-||.... .-++|++.+.++++.+.. ..++++|+|++
T Consensus 275 ~~~~p~~k~l~lGVId~rn~~~ed~e~v~~ri~~a~~~v--e~L~lspsCgL 324 (758)
T PRK05222 275 LKYFPADKVLSAGVIDGRNIWRADLEAALALLEPLAAKV--DRLWVAPSCSL 324 (758)
T ss_pred HhhcCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHhh--ccEEEeCCCCC
Confidence 65443 56777899999764 589999999999999876 68999999996
|
|
| >PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.02 Score=55.99 Aligned_cols=165 Identities=20% Similarity=0.206 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..++.++.. +..| +.+...+-||+|.+..--. .+. . .-.++++.+.....+.++.+.++|+.
T Consensus 135 ~~~~~~~eA-~~~G--~~~kpvL~GP~TfL~Lsk~----~~~--------~---~~~~ll~~l~~vY~~ll~~L~~~G~~ 196 (310)
T PF08267_consen 135 KLLDEFREA-KALG--INTKPVLPGPVTFLLLSKN----EDG--------S---DPLDLLDDLLPVYAELLKELAAAGVE 196 (310)
T ss_dssp HHHHHHHHH-HHTT--GGEEEEEE-HHHHHHTSEE----TTC--------C---HHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHH-Hhhh--cCCeeEEEcHHHHHHHcCc----CCC--------C---CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334444444 3444 3456667799998864221 000 1 22468888889989999999999999
Q ss_pred EEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCC---CCHHHH
Q 015201 251 CIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWT---VDMADG 324 (411)
Q Consensus 251 ~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~---~di~~~ 324 (411)
.|++.+|.-. =. ++.+.+-+..-++++. .. ++.++++.+- |+.. .++.+.+++++++++|.. .++..+
T Consensus 197 ~VQldEP~Lv~d~-~~~~~~~~~~aY~~L~----~~-~~~~ill~TYFg~~~~~l~~l~~lpv~~l~lDlv~~~~~l~~~ 270 (310)
T PF08267_consen 197 WVQLDEPALVLDL-PEEWLEAFEEAYEELA----AA-PRPKILLATYFGDLGDNLELLLDLPVDGLHLDLVRGPENLEAL 270 (310)
T ss_dssp EEEEE-GGGGSSG-CHHHHHHHHHHHHHHC----CT-TTSEEEEE--SS--CCHHHHHTTSSESEEEEETTTHCHHHHHH
T ss_pred EEEecCCeeecCC-CHHHHHHHHHHHHHHh----cC-CCCcEEEECCCCchhhHHHHHhcCCCcEEEeeccCCcccHHHH
Confidence 9999998653 23 5556666666666665 21 2566666654 5544 689999999999999864 356666
Q ss_pred HH-Hh-CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHH
Q 015201 325 RK-RL-GNDISVQGNVDPACL-FSPLPALTDEIQRVVK 359 (411)
Q Consensus 325 ~~-~~-g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~ 359 (411)
.+ .+ .++....|-||-... ..+.+++.+.++++.+
T Consensus 271 ~~~~~p~~k~L~~GvVDGRNiW~~dl~~~~~~l~~l~~ 308 (310)
T PF08267_consen 271 LKYGFPADKVLSAGVVDGRNIWRTDLEAALALLEKLRE 308 (310)
T ss_dssp HHHTTTTTSEEEEEEE-SSS-B---HHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEECCccccccCHHHHHHHHHHHHh
Confidence 66 34 467777899998764 5788888877777654
|
The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A .... |
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0069 Score=60.97 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=115.7
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC--C-CCC
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG--G-QLP 263 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~--~-~iS 263 (411)
.|+-|++.||.|++.+-.- ++ +.|+ |+.+-.++=.+.+..+-+.++|+.+|++.++.- | -+.
T Consensus 553 rPmKGMLTgPvTiL~WSF~----R~---------D~~~--~~~~~QiALaikDEV~DLEkaGikVIQiDE~ALREGLPLR 617 (765)
T KOG2263|consen 553 RPMKGMLTGPVTILNWSFV----RN---------DQPR--HETCYQIALAIKDEVEDLEKAGIKVIQIDEAALREGLPLR 617 (765)
T ss_pred CcccccccCceEEEEeccc----cC---------Ccch--hHHHHHHHHHHHHHHHHHHHcCceEEEeChHHHhcCCCcc
Confidence 5788999999998765432 10 2232 444555555666677778889999999877532 3 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCC-cc-cHhHHhcCCCcEEEcCCCCCHHHHHHH------hCCCeeE
Q 015201 264 PHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGN-GG-FLERMKGTGVDVIGLDWTVDMADGRKR------LGNDISV 334 (411)
Q Consensus 264 p~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~-~~-~l~~~~e~g~d~l~~d~~~di~~~~~~------~g~~~~l 334 (411)
...+ .|.+.+--.-+......-- ..-+--|.|=. .+ ++..++++..|++++++.-+=.++-.. ||..+ -
T Consensus 618 ~aE~-~~Yl~WAv~aFRi~~sgVqd~TQIHtH~CYSdfndi~~~I~~mDADVitIEnSrsD~kllsvf~~gvkY~~~I-G 695 (765)
T KOG2263|consen 618 KAEH-SFYLDWAVHAFRITNSGVQDSTQIHTHMCYSDFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI-G 695 (765)
T ss_pred hhhH-HHHHHHHHHHhhhccccccccchhhhhhhhhhccHHHHHHHhccCcEEEEecCcchHHHHHHHhccCcccCCc-C
Confidence 3332 3333443333322211000 11234466743 34 579999999999999764332222222 44211 1
Q ss_pred EccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC----CCCcHHHHHHHHHHHHhcC
Q 015201 335 QGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL----VGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 335 ~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~----~~tp~Eni~a~~~a~~~yg 394 (411)
-|-.|.... .-+.+|+.+.+.+++.......+.++|+|++- +.+.+ .++.|+++++...
T Consensus 696 pG~~DIHSPRiPs~dE~~erI~~~l~~~~~~~lWvNPDCGLKTR~~~E~~~-~L~~Mv~AAk~~R 759 (765)
T KOG2263|consen 696 PGVYDIHSPRIPSTDEIAERINKMLAVLPQNILWVNPDCGLKTRGYTEVKP-ALKNMVAAAKLIR 759 (765)
T ss_pred CceecccCCCCCCHHHHHHHHHHHHHhcccccEEECCCcCcccCCCccccH-HHHHHHHHHHHHH
Confidence 233444443 36789999999999998877899999999984 34444 4888999998764
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.33 Score=46.48 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCC----
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTG---- 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g---- 309 (411)
++..+++++.+.++|++.|-++- ...||+.|+ .++.+.+..++..+..+.-++...++...+.|
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~~~~---------~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 19 PEEKLEIARQLDELGVDVIEAGF---PAASPGDFE---------AVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC---CCCCHHHHH---------HHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 45667888899999999986631 124787652 33444443335555555546655677777777
Q ss_pred CcEEEcCCC-----------CC----HHH------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLDWT-----------VD----MAD------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d~~-----------~d----i~~------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+.+-.. .+ +.. ..+..|-++++ +..+. -.-+++.+.+.++++.+.. ...+-+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~G-~~~i~l 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEF-SAEDA--TRTDLDFLIEVVEAAIEAG-ATTINI 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-eeecC--CCCCHHHHHHHHHHHHHcC-CCEEEE
Confidence 888765211 11 111 11223444332 22221 1357888888888877643 223333
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
..++. -..|+.+..+++.+++.
T Consensus 163 --~DT~G-~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 163 --PDTVG-YLTPEEFGELIKKLKEN 184 (268)
T ss_pred --CCCCC-CCCHHHHHHHHHHHHHh
Confidence 33332 23466677777777764
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.45 Score=45.51 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++.+ -.+|++++.. +.+ .+......+..|...+..-++...+.|++.+
T Consensus 21 ~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~-----~~l----~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 21 TEDKIEIAKALDAFGVDYIELTSP---AASPQSRADC-----EAI----AKLGLKAKILTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHH-----HHH----HhCCCCCcEEEEecCCHHHHHHHHHcCcCEE
Confidence 455677888999999999987643 4567776532 222 2211122345565555556888889999988
Q ss_pred EcCC-----------CCCHHHHHHHh----------CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDW-----------TVDMADGRKRL----------GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~-----------~~di~~~~~~~----------g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
++-. ..+.+++.+.+ | +.+..++-- ...-+++.+.+.++++.+. +...+.+. .
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G--~~v~~~~ed-a~r~~~~~l~~~~~~~~~~-g~~~i~l~--D 162 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKG--IEVRFSSED-SFRSDLVDLLRVYRAVDKL-GVNRVGIA--D 162 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEe-eCCCCHHHHHHHHHHHHHc-CCCEEEEC--C
Confidence 6521 23333332222 3 222222211 1124567777766666554 32344442 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++. -..|+.+..++..+++.
T Consensus 163 t~G-~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 163 TVG-IATPRQVYELVRTLRGV 182 (262)
T ss_pred cCC-CCCHHHHHHHHHHHHHh
Confidence 332 34456677777777764
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.5 Score=47.43 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+ .+|++.|+. ++.+.+..++..+..+.-.+...++...+.|++.+
T Consensus 22 ~~~k~~ia~~L~~~Gv~~IEvG~p---~~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 22 AAEKLAIARALDEAGVDELEVGIP---AMGEEERAV---------IRAIVALGLPARLMAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHH---------HHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEE
Confidence 355567888889999999876522 256655442 33333332233333333244446788888999988
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 90 ~i 91 (365)
T TIGR02660 90 HI 91 (365)
T ss_pred EE
Confidence 65
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.5 Score=45.79 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTG 309 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g 309 (411)
.+.++++.+++.|++++++..+.|. .+|.++.++++ +..++.+. +.+|++.|++.++. -+ ....+.|
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~----~~~~~~~~---~~~pvi~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVV----RAAVEETA---GRVPVLAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhC---CCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 3445566778899999988887774 79999988873 34444443 25789999876543 23 4555789
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|++.+
T Consensus 95 ad~v~~ 100 (289)
T cd00951 95 ADGILL 100 (289)
T ss_pred CCEEEE
Confidence 888754
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.64 Score=44.24 Aligned_cols=141 Identities=13% Similarity=0.032 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++=+ .+++..|+ .++.+.+..++..+..+.-.+...++...+.|++.+
T Consensus 19 ~~~k~~i~~~L~~~Gv~~iE~g~p---~~~~~~~e---------~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 19 REEKLAIARALDEAGVDEIEVGIP---AMGEEERE---------AIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC---CCCHHHHH---------HHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEE
Confidence 466678888899999999877522 24554432 233333332244444454344445777888999988
Q ss_pred EcCCCCC-----------HH----------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDWTVD-----------MA----------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~~~d-----------i~----------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.+-...+ .+ +..+..|-.+.+ +-.|. -.-+++.+.+.++++.+. +...+.|. .
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~-G~~~i~l~--D 160 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV-GAEDA--SRADPDFLIEFAEVAQEA-GADRLRFA--D 160 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE-eeccC--CCCCHHHHHHHHHHHHHC-CCCEEEeC--C
Confidence 6521111 11 112223433222 21111 125688888887777664 32233332 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++. ...|+.+..++..+++.
T Consensus 161 T~G-~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 161 TVG-ILDPFTTYELIRRLRAA 180 (259)
T ss_pred CCC-CCCHHHHHHHHHHHHHh
Confidence 222 34466677777777653
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.4 Score=42.33 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-----c
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-----G 300 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-----~ 300 (411)
++.+.+...+-++.+++-|+|.+.+ +. +.+...- +-+.-..++.++.... ..|+++|.- |.+ .
T Consensus 138 fd~l~~ay~eq~~~Li~gG~D~iLi-ET---~~D~l~~-KaA~~a~~~~~~~~~~---~LPv~~s~Ti~~sG~tl~Gq~~ 209 (311)
T COG0646 138 FDELVEAYREQVEGLIDGGADLILI-ET---IFDTLNA-KAAVFAAREVFEELGV---RLPVMISGTITDSGRTLSGQTI 209 (311)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEE-eh---hccHHHH-HHHHHHHHHHHHhcCC---cccEEEEEEEecCceecCCCcH
Confidence 6666777778888999999999854 33 3344332 2344455555554433 478887752 332 1
Q ss_pred --cHhHHhcCCCcEEEcCCCCC-------HHHHHHHhCCCeeEEccC--CcC---cc-C-CCHHHHHHHHHHHHHHhCCC
Q 015201 301 --FLERMKGTGVDVIGLDWTVD-------MADGRKRLGNDISVQGNV--DPA---CL-F-SPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 301 --~l~~~~e~g~d~l~~d~~~d-------i~~~~~~~g~~~~l~G~v--d~~---~L-~-gt~eeV~~ev~~~i~~~~~~ 364 (411)
++..+...|++.+.+.-..- +.++.+....-++...|- +.. .+ + .+||+..+.++...+.++
T Consensus 210 ~a~~~~l~~~~~~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~-- 287 (311)
T COG0646 210 EAFLNSLEHLGPDAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG-- 287 (311)
T ss_pred HHHHHHhhccCCcEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC--
Confidence 35667788999886543222 344444444445555543 221 11 2 689999999988888763
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHH
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
.=+=-||. ||.||+|+||.++++
T Consensus 288 -vnIvGGCC---GTTPeHIraia~~v~ 310 (311)
T COG0646 288 -VNIVGGCC---GTTPEHIRAIAEAVK 310 (311)
T ss_pred -ceeecccc---CCCHHHHHHHHHHhc
Confidence 22223554 578999999999886
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.6 Score=41.68 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-C---CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDS-W---GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~-~---~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++.. . ...++++.=.+-+.|. ++.+++.. +.|+.+|+.... .++.-.+.|+
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~----v~~~~~~~-~~plsiDT~~~~-vi~~al~~G~ 96 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPV----IKALRDQP-DVPISVDTYRAE-VARAALEAGA 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH----HHHHHhcC-CCeEEEeCCCHH-HHHHHHHcCC
Confidence 44556677899999999988632 2 2367887533444444 44454442 577777764332 3455555699
Q ss_pred cEEE-cCC--CCCHHHHHHHhCCCeeEEc--cCCcCc---c-C-CCHHHHHHHHHHHHHHhCC-----CCeEEeCCCCCC
Q 015201 311 DVIG-LDW--TVDMADGRKRLGNDISVQG--NVDPAC---L-F-SPLPALTDEIQRVVKCAGS-----RGHILNLGHGVL 375 (411)
Q Consensus 311 d~l~-~d~--~~di~~~~~~~g~~~~l~G--~vd~~~---L-~-gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~i~ 375 (411)
+.++ +.. .-++..+.+++|-.+++|= +++... . + ...+++.+..++.++.+.. ...||-||.+..
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ 176 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFG 176 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcc
Confidence 9985 432 2236677777887666652 221111 1 1 1246677777777665432 467999988755
Q ss_pred CCCcHHHHHHHHHHHHhc
Q 015201 376 VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 376 ~~tp~Eni~a~~~a~~~y 393 (411)
. +..+| ..+++..+++
T Consensus 177 k-s~~~~-~~~l~~i~~l 192 (257)
T TIGR01496 177 K-TPEHN-LELLKHLEEF 192 (257)
T ss_pred c-CHHHH-HHHHHHHHHH
Confidence 4 43333 3333444443
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.77 Score=46.34 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++- ..++++.|+. ++.+.+.+....+..++-.....++...+.|++.+
T Consensus 25 ~e~k~~ia~~L~~~GV~~IE~G~---p~~~~~~~e~---------i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 25 NEEKLAIARMLDEIGVDQIEAGF---PAVSEDEKEA---------IKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeC---CCcChHHHHH---------HHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 34556778888999999986642 2367766542 33443332222234443232335788888999887
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
.+
T Consensus 93 ~i 94 (378)
T PRK11858 93 HI 94 (378)
T ss_pred EE
Confidence 65
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.79 Score=44.40 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c-cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G-FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~-~l---~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|+++.+++ .+.+.+.++. .+|++.|.++.. . .+ ....+
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~----~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEEL----IRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHH----HHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHH
Confidence 34445666778899999988776664 7999998887 3444444432 478999998753 2 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|.+.+
T Consensus 95 ~G~d~v~~ 102 (292)
T PRK03170 95 AGADGALV 102 (292)
T ss_pred cCCCEEEE
Confidence 89998854
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.3 Score=48.76 Aligned_cols=111 Identities=22% Similarity=0.242 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHh--cCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMK--GTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~--e~g~ 310 (411)
++..++++.+.+.|+|-|++ -|++|+++|..-. ++++.+|+.. ++|+.+|++.... ..-+++ +.|+
T Consensus 156 e~yv~~akel~~~g~DSIci-KDmaGlltP~~ay--------elVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGv 225 (472)
T COG5016 156 EYYVELAKELLEMGVDSICI-KDMAGLLTPYEAY--------ELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGV 225 (472)
T ss_pred HHHHHHHHHHHHcCCCEEEe-ecccccCChHHHH--------HHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCc
Confidence 45556788889999999977 4567789997644 4567788876 6899999987654 244544 6799
Q ss_pred cEEE-----cCCC---CCHHHHHHHhCCCeeEEc-cCCcCccCCCHHHHHHHHHHHHHHh
Q 015201 311 DVIG-----LDWT---VDMADGRKRLGNDISVQG-NVDPACLFSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 311 d~l~-----~d~~---~di~~~~~~~g~~~~l~G-~vd~~~L~gt~eeV~~ev~~~i~~~ 361 (411)
|++. +..+ .+.......+ .| +-|+.+...-.+++.++.+++.+..
T Consensus 226 D~iDTAisp~S~gtsqP~tEtmv~aL------~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 226 DGIDTAISPLSGGTSQPATETMVAAL------RGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred chhhhhhccccCCCCCCcHHHHHHHh------cCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 9873 2222 2333333333 23 4455433344566777777776665
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.66 Score=44.97 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++ +|.+|+.+-...-+ .+.+..+.+. ++..+. ..+-+..-++.-.+.|++.+
T Consensus 25 ~e~k~~ia~~L~~~Gv~~IEvg----sf~~p~~~p~~~d~--~e~~~~l~~~-~~~~~~-~l~~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 25 TADKIALIDRLSAAGLSYIEVA----SFVSPKWVPQMADA--AEVMAGIQRR-PGVTYA-ALTPNLKGLEAALAAGADEV 96 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCcCcccccccccH--HHHHHhhhcc-CCCeEE-EEecCHHHHHHHHHcCCCEE
Confidence 4566788889999999998664 45555443222211 3444444432 244333 44544445788888999988
Q ss_pred EcCCC-----------CCHHH----------HHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLDWT-----------VDMAD----------GRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d~~-----------~di~~----------~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+-.. .+..+ ..+..| +.+.++|.... -.-+++.+.+.++++.+.+. ..+.
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-d~i~ 173 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGC-YEIS 173 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCC-cEEE
Confidence 54211 11111 122334 23344333211 12467778777777776532 2333
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
|. .++. -..|+.+..+++.+++
T Consensus 174 l~--DT~G-~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 174 LG--DTIG-VGTPGQVRAVLEAVLA 195 (287)
T ss_pred ec--cccC-ccCHHHHHHHHHHHHH
Confidence 32 2222 2345557777766664
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.72 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++.-+++++.+.++|++.|-++ .+.||+..-.+. -.+++++.+++. .+..+. -.|.+..-++...++|++.+
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvG----s~vspk~vPqma--d~~ev~~~i~~~-~~~~~~-~l~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEAT----SFVSPKWVPQLA--DAKDVMAAVRNL-EGARFP-VLTPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC----CCcCcccccccc--cHHHHHHHHHhc-cCCcee-EEcCCHHHHHHHHHcCcCEE
Confidence 3555678889999999998664 234553221111 112233333332 133222 23554446888889999987
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 139 ~i 140 (347)
T PLN02746 139 AV 140 (347)
T ss_pred EE
Confidence 54
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.71 Score=44.57 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++++..+.|- .+|.+++++++ +...+.++. .+|++.|+++... -+ ....+
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~ 91 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVI----EFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAED 91 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHH
Confidence 34455666778899999988777664 79999998874 444555542 4788888876532 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 92 ~Gad~v~v 99 (285)
T TIGR00674 92 VGADGFLV 99 (285)
T ss_pred cCCCEEEE
Confidence 89998854
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.3 Score=43.32 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTGV 310 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g~ 310 (411)
+.+.++.+++.|+++|++....|- .+|++..++++ +...+.+. +.+|++.|+++++. -+ ....+.|+
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~---~~~pvi~gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVV----RAAVETTA---GRVPVIAGAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhC---CCCcEEEecCCCHHHHHHHHHHHHHhCC
Confidence 345556777889999988777774 79999988873 33444443 25789999976543 23 44556899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
|++.+
T Consensus 103 dav~~ 107 (303)
T PRK03620 103 DGILL 107 (303)
T ss_pred CEEEE
Confidence 88753
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.2 Score=44.70 Aligned_cols=141 Identities=12% Similarity=0.023 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+ ..|++.|+ .++.+.+.+....+..|...+...++...+.|++.+
T Consensus 21 ~~~k~~ia~~L~~~Gv~~IEvG~p---~~~~~~~e---------~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (363)
T TIGR02090 21 VEQKVEIARKLDELGVDVIEAGFP---IASEGEFE---------AIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSI 88 (363)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCChHHHH---------HHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEE
Confidence 455567788889999999866322 34565542 233333333244455566655556888889999988
Q ss_pred EcCCC-----------CCHHH----------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GLDWT-----------VDMAD----------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~d~~-----------~di~~----------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.+-.. .+.++ ..+..|-++.+. -.|. -.-+++.+.+.++++.+. +...+.+.-
T Consensus 89 ~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~-~eda--~r~~~~~l~~~~~~~~~~-g~~~i~l~D-- 162 (363)
T TIGR02090 89 HTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS-AEDA--TRTDIDFLIKVFKRAEEA-GADRINIAD-- 162 (363)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE-Eeec--CCCCHHHHHHHHHHHHhC-CCCEEEEeC--
Confidence 65211 12111 112234333221 1121 135677777777766654 323444432
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++ ....|+.+..+++.+++.
T Consensus 163 T~-G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 163 TV-GVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CC-CccCHHHHHHHHHHHhcc
Confidence 22 234456677777776653
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.9 Score=40.21 Aligned_cols=138 Identities=11% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CC-------cccHhH----Hh
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GN-------GGFLER----MK 306 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~-------~~~l~~----~~ 306 (411)
.++..++.|++.+.+-...+.. + .+......+++.+..+++ +.|+++-.+ |. ...+.. ..
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~-~----~~~~~~~i~~v~~~~~~~--g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSE-E----EREMLEELARVAAEAHKY--GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCc-h----HHHHHHHHHHHHHHHHHc--CCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 3456788999988554444432 1 355666788888888876 788876443 21 112333 55
Q ss_pred cCCCcEEEcCCCCCHHHHH---HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHH
Q 015201 307 GTGVDVIGLDWTVDMADGR---KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAV 383 (411)
Q Consensus 307 e~g~d~l~~d~~~di~~~~---~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni 383 (411)
+.|+|.+-+.+..|+..++ +..+-.+.+.||+.. .|+++..+.++++++.+.. |+.++..- +...-|.+-+
T Consensus 154 ~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~----~~~~~~l~~~~~~~~~Ga~-gv~vg~~i-~~~~dp~~~~ 227 (235)
T cd00958 154 ELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKK----DSEEEFLKMVYDAMEAGAA-GVAVGRNI-FQRPDPVAML 227 (235)
T ss_pred HHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCC----CCHHHHHHHHHHHHHcCCc-EEEechhh-hcCCCHHHHH
Confidence 7899999776555555554 444444656677655 4788888888999885433 66555432 2233355556
Q ss_pred HHHHHHH
Q 015201 384 AHFFEVG 390 (411)
Q Consensus 384 ~a~~~a~ 390 (411)
+++.+.+
T Consensus 228 ~~~~~~~ 234 (235)
T cd00958 228 RAISAVV 234 (235)
T ss_pred HHHHHHh
Confidence 6665543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.7 Score=41.58 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=89.7
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-------cCCcc--c----HhHHhc
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-------NGNGG--F----LERMKG 307 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-------CG~~~--~----l~~~~e 307 (411)
++..++.|+|.+.+-..+++.- ++...-..+++.+..++. |+|++++. -+... . .....+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~-----~~~~~~~~~~v~~~~~~~--g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSET-----EAEMLEDLGEVAEECEEW--GMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChh-----HHHHHHHHHHHHHHHHHc--CCcEEEEEecCCCccCCCccHHHHHHHHHHHHH
Confidence 4457899999988876666422 334566788888888876 78887762 11111 1 133447
Q ss_pred CCCcEEEcCCCCCHHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHH
Q 015201 308 TGVDVIGLDWTVDMADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAV 383 (411)
Q Consensus 308 ~g~d~l~~d~~~di~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni 383 (411)
.|+|.+-..+..++..+++.. +-.+...||++. .|.++..+.++++++.+.. |.. .|-.+ ...-|.+.+
T Consensus 172 ~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~GGi~~----~~~~~~l~~v~~~~~aGA~-Gis--~gr~i~~~~~p~~~~ 244 (267)
T PRK07226 172 LGADIVKTNYTGDPESFREVVEGCPVPVVIAGGPKT----DTDREFLEMVRDAMEAGAA-GVA--VGRNVFQHEDPEAIT 244 (267)
T ss_pred HCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCCc-EEe--hhhhhhcCCCHHHHH
Confidence 899999665544565555544 335777898887 4678888888888887554 433 33333 334467777
Q ss_pred HHHHHHHHhc
Q 015201 384 AHFFEVGKSM 393 (411)
Q Consensus 384 ~a~~~a~~~y 393 (411)
+++...+++=
T Consensus 245 ~~l~~~v~~~ 254 (267)
T PRK07226 245 RAISAVVHEG 254 (267)
T ss_pred HHHHHHHhCC
Confidence 7777777653
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.2 Score=38.72 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++- +....++++.=.+-+.|.++.+-+.. +.|+. ++-... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-----~~plS--IDT~~~~v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-----DVLIS--VDTFRAEVARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCcEE--EeCCCHHHHHHHHHhC
Confidence 4455667788999999998873 23347899887777777777765433 45543 333333 466666779
Q ss_pred CcEEE-cCCC---CCHHHHHHHhCCCeeEEc--cCCcCc--c--C-CCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 310 VDVIG-LDWT---VDMADGRKRLGNDISVQG--NVDPAC--L--F-SPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 310 ~d~l~-~d~~---~di~~~~~~~g~~~~l~G--~vd~~~--L--~-gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
++.++ +... ..+..+.+++|-.+++|- +++... . + ...+++.+..++.++.+.. ..+|+-||.+
T Consensus 97 ~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~g 176 (257)
T cd00739 97 ADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIG 176 (257)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCC
Confidence 99986 5332 235555677876666652 222211 0 1 1246677777777776543 3789999987
Q ss_pred CCCCCcHHHH
Q 015201 374 VLVGTPEEAV 383 (411)
Q Consensus 374 i~~~tp~Eni 383 (411)
+... ..+|+
T Consensus 177 f~ks-~~~~~ 185 (257)
T cd00739 177 FGKT-PEHNL 185 (257)
T ss_pred cccC-HHHHH
Confidence 6544 44443
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.3 Score=42.88 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhC-CCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc-cH---hHHh
Q 015201 235 QAIADYIIYQVESG-AHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G-~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~-~l---~~~~ 306 (411)
+.+.++++.+++.| +++|++....|. .+|.++.++++ +...+.... .+|++.|+.+. +. -+ ....
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~la~~a~ 93 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIF----RIAKDEAKD---QIALIAQVGSVNLKEAVELGKYAT 93 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHH----HHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHH
Confidence 34456677788999 999988887774 79999988864 334444432 47888776443 32 23 4556
Q ss_pred cCCCcEEEc
Q 015201 307 GTGVDVIGL 315 (411)
Q Consensus 307 e~g~d~l~~ 315 (411)
+.|+|++.+
T Consensus 94 ~~Gad~v~v 102 (290)
T TIGR00683 94 ELGYDCLSA 102 (290)
T ss_pred HhCCCEEEE
Confidence 789988754
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=7 Score=37.77 Aligned_cols=154 Identities=9% Similarity=0.076 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++--+ +..+|++.-.+-+.|.++.+.+.. ++|+ -++-... .++.-.+.|
T Consensus 38 ~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-----~~~I--SIDT~~~~va~~AL~~G 110 (282)
T PRK11613 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-----EVWI--SVDTSKPEVIRESAKAG 110 (282)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCeE--EEECCCHHHHHHHHHcC
Confidence 344566778889999999887522 248999887777888888775433 3443 3444433 467777789
Q ss_pred CcEEE-cCC--CCCHHHHHHHhCCCeeEEccC-CcCccC-----CC-HHHHHHHHHHHHHHhC----C-CCeEEeCCCCC
Q 015201 310 VDVIG-LDW--TVDMADGRKRLGNDISVQGNV-DPACLF-----SP-LPALTDEIQRVVKCAG----S-RGHILNLGHGV 374 (411)
Q Consensus 310 ~d~l~-~d~--~~di~~~~~~~g~~~~l~G~v-d~~~L~-----gt-~eeV~~ev~~~i~~~~----~-~gfIls~gc~i 374 (411)
++++| +.. ..++.+..+++|-.+++|=.- .|.... .+ .++|.+..++.++.+. + ..+|+-||-++
T Consensus 111 adiINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF 190 (282)
T PRK11613 111 AHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGF 190 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc
Confidence 99994 322 123444456677677776221 122111 11 3445445455555432 2 47899999887
Q ss_pred CCCCcHHHHHHHH--HHHHhcCCC
Q 015201 375 LVGTPEEAVAHFF--EVGKSMKYD 396 (411)
Q Consensus 375 ~~~tp~Eni~a~~--~a~~~yg~~ 396 (411)
.. +..+|+.-+- +..+++|.+
T Consensus 191 ~k-~~~~n~~ll~~l~~l~~lg~P 213 (282)
T PRK11613 191 GK-NLSHNYQLLARLAEFHHFNLP 213 (282)
T ss_pred CC-CHHHHHHHHHHHHHHHhCCCC
Confidence 53 3456665543 445666543
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=92.99 E-value=2.3 Score=40.95 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--c---HhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--F---LERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~---l~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|.+++++++ +...+... +..|++.+.++... - .....+
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~----~~~~~~~~---~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVI----EAVVEAVN---GRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHH----HHHHHHhC---CCCcEEeccCCccHHHHHHHHHHHHH
Confidence 44556677788899999988876664 79999988873 33334443 25788888887542 2 355667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|.+.+
T Consensus 94 ~G~d~v~~ 101 (284)
T cd00950 94 AGADAALV 101 (284)
T ss_pred cCCCEEEE
Confidence 89998753
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=92.91 E-value=4.1 Score=38.69 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec------CCcc--cH----hHHhc
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN------GNGG--FL----ERMKG 307 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C------G~~~--~l----~~~~e 307 (411)
.++..++.|++.+.+-+.++. ...+ +++ ...+++.+..+++ |+|++++.- |... .+ ....+
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~---~~~~-~~~-~~~~~i~~~~~~~--g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGS---DTEW-EQI-RDLGMIAEICDDW--GVPLLAMMYPRGPHIDDRDPELVAHAARLGAE 167 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCC---chHH-HHH-HHHHHHHHHHHHc--CCCEEEEEeccCcccccccHHHHHHHHHHHHH
Confidence 355678999999998887664 1222 333 5788888888876 678766321 2111 12 23346
Q ss_pred CCCcEEEcCCCCCHHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHH
Q 015201 308 TGVDVIGLDWTVDMADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAV 383 (411)
Q Consensus 308 ~g~d~l~~d~~~di~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni 383 (411)
.|+|.+-+.+..++..+++.. +-.+...||+.. .|.++..+.+.++++.+.. |+..+ -.+ ...-|.+.+
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~----~~~~~~~~~i~~~~~aGa~-Gia~g--~~i~~~~dp~~~~ 240 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKT----NSDREFLQMIKDAMEAGAA-GVAVG--RNIFQHDDPVGIT 240 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCC----CCHHHHHHHHHHHHHcCCc-EEehh--hHhhcCCCHHHHH
Confidence 899999776665666555443 344666788876 4678888888888887554 44433 333 233356666
Q ss_pred HHHHHHHHh
Q 015201 384 AHFFEVGKS 392 (411)
Q Consensus 384 ~a~~~a~~~ 392 (411)
+++.+.+++
T Consensus 241 ~~l~~~i~~ 249 (258)
T TIGR01949 241 KAVCKIVHE 249 (258)
T ss_pred HHHHHHHhC
Confidence 666665543
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.81 E-value=2 Score=40.94 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHH----HHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQ----WSEPYIREIVSLVRTKCPETPIVLYINGNGG---- 300 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~e----f~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---- 300 (411)
+..++.++.+.++|+|.+-++ ||.+. .|-...-|- +-.+..-++++.+++.+.++|+++..+-|.-
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G 110 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG 110 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh
Confidence 455677788899999998655 55552 222222221 2235555678888877668899999988742
Q ss_pred ---cHhHHhcCCCcEEEc-CC----CCCHHHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 301 ---FLERMKGTGVDVIGL-DW----TVDMADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 301 ---~l~~~~e~g~d~l~~-d~----~~di~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
++...++.|+|++-+ |- ..++.+..+++| +++..|. .|+++- .+++.+.. .|||--.
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~g--------i~~I~lvaPtt~~~r---l~~i~~~a--~GFiY~v 177 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHG--------IDPIFLVAPTTPDER---LKKIAEAA--SGFIYYV 177 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcC--------CcEEEEeCCCCCHHH---HHHHHHhC--CCcEEEE
Confidence 345677899999854 32 223444555444 4554432 455432 33344433 3666555
Q ss_pred CC-CCC-CCCc-HHHHHHHHHHHHhcCCCCCCC
Q 015201 371 GH-GVL-VGTP-EEAVAHFFEVGKSMKYDNSSQ 400 (411)
Q Consensus 371 gc-~i~-~~tp-~Eni~a~~~a~~~yg~~~~~~ 400 (411)
+. ++. ...+ .+-+...++.+|+|...++..
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v 210 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLV 210 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEE
Confidence 54 221 1112 223899999999987666543
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=92.72 E-value=5 Score=38.12 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CCcccHh
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GNGGFLE 303 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~~~~l~ 303 (411)
++.+.+..++-++.+.+.|+|+|.+-+-. ..-.+|+ ....+-+++..+++.. ++|+-+.+= +...-+.
T Consensus 24 ~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~e-----tvaaM~~i~~~v~~~~-~~p~GVnvL~nd~~aala 97 (254)
T PF03437_consen 24 MEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPE-----TVAAMARIAREVRREV-SVPVGVNVLRNDPKAALA 97 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHH-----HHHHHHHHHHHHHHhC-CCCEEeeeecCCCHHHHH
Confidence 56677778888999999999999665422 2224543 3456778888887764 566533322 2222344
Q ss_pred HHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc--cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 304 RMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC--LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 304 ~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~--L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
.-..+|.+-+-+ +.. -++-..|+.++-++.++++|+... -.++ ..+.+.++..++.++.-+.
T Consensus 98 iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~~~~~~~~a~~~~~aDav 176 (254)
T PF03437_consen 98 IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RDLEEAAKDAVERGGADAV 176 (254)
T ss_pred HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CCHHHHHHHHHHhcCCCEE
Confidence 444456555421 111 145667888887899999999853 1222 2255667777776665566
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~ 390 (411)
|++-. .....++++.++.+.+.+
T Consensus 177 iVtG~-~TG~~~~~~~l~~vr~~~ 199 (254)
T PF03437_consen 177 IVTGK-ATGEPPDPEKLKRVREAV 199 (254)
T ss_pred EECCc-ccCCCCCHHHHHHHHhcC
Confidence 66533 333345566555555443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.5 Score=40.51 Aligned_cols=74 Identities=15% Similarity=0.295 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++++....|. .+|.+..++.+ +.+.+.++. .+|++.|..+... .+ ....+
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVI----EAVVEAVAG---RVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHhCC---CCeEEEecCCccHHHHHHHHHHHHH
Confidence 44556677788889999988887774 79999988763 334444432 5788999887643 23 45667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 91 ~Gad~v~v 98 (281)
T cd00408 91 AGADGVLV 98 (281)
T ss_pred cCCCEEEE
Confidence 89998754
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.1 Score=41.11 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++++.++|++.|-++ ++.||+.+-.+.- ...++..+... .+..+..+ |.+..-++...+.|++.+
T Consensus 19 ~e~K~~i~~~L~~~Gv~~IEvG----s~~~~~~~p~~~d--~~~~~~~l~~~-~~~~~~~~-~~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 19 TEDKIELIDALSAAGLRRIEVT----SFVSPKWVPQMAD--AEEVLAGLPRR-PGVRYSAL-VPNLRGAERALAAGVDEV 90 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC----CCCCcccccccCC--HHHHHhhcccC-CCCEEEEE-CCCHHHHHHHHHcCcCEE
Confidence 3566788899999999998764 3455543211110 00222222221 13333333 555446888889999988
Q ss_pred EcCC-C----------CCH----------HHHHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLDW-T----------VDM----------ADGRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d~-~----------~di----------~~~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
++-. . .+. .+..+..|. .+.+++.... =.-+++.+.+.++++.+. +...+-
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~--~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~ 167 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL--RVRGYVSTAFGCPYEGEVPPERVAEVAERLLDL-GCDEIS 167 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHc-CCCEEE
Confidence 6421 1 121 112222342 3444433221 013677777777777653 322343
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+.- ++. -..|+.+..+++.+++.
T Consensus 168 l~D--T~G-~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 168 LGD--TIG-VATPAQVRRLLEAVLER 190 (274)
T ss_pred ECC--CCC-ccCHHHHHHHHHHHHHH
Confidence 432 222 23466677777777653
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=92.66 E-value=4.8 Score=38.78 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
++.++.+.+.|+..+++...... ..++.+ .++++++.+.+++. ++.+.++. |..+ .++.+++.|++.+++
T Consensus 68 ~~~~~~~~~~g~~~~~l~~~g~~-~~~~~~----~~~~~~i~~~~~~~--~i~~~~~~-g~~~~e~l~~Lk~aG~~~v~i 139 (296)
T TIGR00433 68 LEEARKAKAAGATRFCLVASGRG-PKDREF----MEYVEAMVQIVEEM--GLKTCATL-GLLDPEQAKRLKDAGLDYYNH 139 (296)
T ss_pred HHHHHHHHHCCCCEEEEEEecCC-CChHHH----HHHHHHHHHHHHhC--CCeEEecC-CCCCHHHHHHHHHcCCCEEEE
Confidence 44455556678888766554443 334433 56777777777665 56555443 6554 478899999999865
Q ss_pred C
Q 015201 316 D 316 (411)
Q Consensus 316 d 316 (411)
+
T Consensus 140 ~ 140 (296)
T TIGR00433 140 N 140 (296)
T ss_pred c
Confidence 3
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=92.61 E-value=9.6 Score=36.21 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.. +..+|++.=.+-+.|..+.+.+.. +.|+. ++-... .++.-.+.|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~-----~~piS--IDT~~~~v~~aaL~~g 96 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP-----DVPIS--VDTFNAEVAEAALKAG 96 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC-----CCeEE--EeCCcHHHHHHHHHhC
Confidence 455677788999999999877433 237888775555666666654322 45543 333322 467667778
Q ss_pred CcEEE-cCCC---CCHHHHHHHhCCCeeEEccCC-cCc---c---CCCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 310 VDVIG-LDWT---VDMADGRKRLGNDISVQGNVD-PAC---L---FSPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 310 ~d~l~-~d~~---~di~~~~~~~g~~~~l~G~vd-~~~---L---~gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
++.++ +... ..+.++.+++|-.++++-.=+ +.. + ..+.+++.+..++.++.+.. ..+|+-||-+
T Consensus 97 ~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g 176 (258)
T cd00423 97 ADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIG 176 (258)
T ss_pred CCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCC
Confidence 99885 4322 235666777887677764211 111 1 13557777777777775532 4789999987
Q ss_pred CCCCCcHHHHHHHHHHHHhc
Q 015201 374 VLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~y 393 (411)
... ....|+. +++..+.+
T Consensus 177 ~~k-~~~~~~~-~l~~i~~~ 194 (258)
T cd00423 177 FGK-TEEHNLE-LLRRLDAF 194 (258)
T ss_pred ccC-CHHHHHH-HHHHHHHH
Confidence 554 4344433 44444433
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=92.55 E-value=2.4 Score=39.48 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc----HhHHhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF----LERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~----l~~~~e~g 309 (411)
++..+++++.+.++|++.|-++ -.+.+++.|+ .++++.+.... ..+..+.-..... ++.+.+.|
T Consensus 13 ~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~-----~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGVDYIEVG---FPFASEDDFE-----QVRRLREALPN----ARLQALCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE---HCTSSHHHHH-----HHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEc---ccccCHHHHH-----Hhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhcc
Confidence 4566778888899999998775 3467777654 45567766664 2343443333222 44556799
Q ss_pred CcEEEcC-CCCC--------------HHH------HHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLD-WTVD--------------MAD------GRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d-~~~d--------------i~~------~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+.+- ...| +.. ..+..|.++.+ +..|. -.-+++++.+.++++.+.. ...+.+
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~-~~~~~--~~~~~~~~~~~~~~~~~~g-~~~i~l 156 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAF-GCEDA--SRTDPEELLELAEALAEAG-ADIIYL 156 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEE-EETTT--GGSSHHHHHHHHHHHHHHT--SEEEE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEe-Ccccc--ccccHHHHHHHHHHHHHcC-CeEEEe
Confidence 9998642 2222 222 22334543322 22221 2368899988888887763 334444
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
.-. -.-..|+.+..+++.+++.-
T Consensus 157 ~Dt---~G~~~P~~v~~lv~~~~~~~ 179 (237)
T PF00682_consen 157 ADT---VGIMTPEDVAELVRALREAL 179 (237)
T ss_dssp EET---TS-S-HHHHHHHHHHHHHHS
T ss_pred eCc---cCCcCHHHHHHHHHHHHHhc
Confidence 322 22345777888888887653
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.46 E-value=6.4 Score=37.92 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e 307 (411)
+-.++.++...+.|+|++.+.-+.-.-.|+ +-+.-|++++.+.. +.|++++.. |.. . .+..+.+
T Consensus 80 ~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~i~~~~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 80 EEAISLTKFAEDVGADGFLVVTPYYNKPTQ----EGLYQHFKAIAEEV-----DLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 334566777789999999876654333343 45666888888876 468877753 432 2 3566666
Q ss_pred CCCcEEEc-CCCCCH---HHHHHHhCCCeeEEccCCcC
Q 015201 308 TGVDVIGL-DWTVDM---ADGRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 308 ~g~d~l~~-d~~~di---~~~~~~~g~~~~l~G~vd~~ 341 (411)
.+ +++.+ +...|+ .++++..+++..++.|-|..
T Consensus 151 ~~-~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d~~ 187 (285)
T TIGR00674 151 EP-NIVAIKEATGNLERISEIKAIAPDDFVVLSGDDAL 187 (285)
T ss_pred CC-CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECchHH
Confidence 54 56655 334444 44556666677777776653
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.42 E-value=5.9 Score=38.73 Aligned_cols=145 Identities=8% Similarity=0.134 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCC-------------------HHHHHHHH--HHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLP-------------------PHMWEQWS--EPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iS-------------------p~~f~ef~--~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
.+.+++..++|||.|-+---.. ..|| =++|++.. +.++.++.+.+++. | +++.+
T Consensus 33 ~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~--G--i~~~S 108 (347)
T COG2089 33 KELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKR--G--IIFFS 108 (347)
T ss_pred HHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHc--C--eEEEe
Confidence 4456677789999875543111 2333 24555544 45678999999987 4 34444
Q ss_pred cCCcc-cHhHHhcCCCcEEEcC--CCCCHHHHH--HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 296 NGNGG-FLERMKGTGVDVIGLD--WTVDMADGR--KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 296 CG~~~-~l~~~~e~g~d~l~~d--~~~di~~~~--~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
--.-. ..+.+..+++..+-+. ..+++.-++ .+.++.+.+.-|+ .+-+||.+.+.-+-+...+.-.+|.
T Consensus 109 SPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGm------a~~~ei~~av~~~r~~g~~~i~LLh- 181 (347)
T COG2089 109 SPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGM------ATIEEIEEAVAILRENGNPDIALLH- 181 (347)
T ss_pred cCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEccc------ccHHHHHHHHHHHHhcCCCCeEEEE-
Confidence 33322 4788888999988542 234444433 3345556555444 3577787666555554433233444
Q ss_pred CCCCCCCCcH--HHHHHHHHHHHhcC
Q 015201 371 GHGVLVGTPE--EAVAHFFEVGKSMK 394 (411)
Q Consensus 371 gc~i~~~tp~--Eni~a~~~a~~~yg 394 (411)
|.-..-+|. -|+.+|.+....|+
T Consensus 182 -C~s~YPap~ed~NL~~i~~l~~~Fn 206 (347)
T COG2089 182 -CTSAYPAPFEDVNLKAIPKLAEAFN 206 (347)
T ss_pred -ecCCCCCCHHHhhHHHHHHHHHHhC
Confidence 443334554 58889988888884
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.39 E-value=3.1 Score=43.72 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhH----HhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLER----MKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~----~~e~g 309 (411)
++-.+++++.+.++|+|.|-++-+ ..||+.|+.+ +++.+..+ +..+..+.-.....++. +.+.|
T Consensus 25 ~e~K~~ia~~L~~~Gv~~IE~G~p---~~s~~d~~~v-----~~i~~~~~----~~~i~a~~r~~~~did~a~~a~~~~~ 92 (513)
T PRK00915 25 VEEKLQIAKQLERLGVDVIEAGFP---ASSPGDFEAV-----KRIARTVK----NSTVCGLARAVKKDIDAAAEALKPAE 92 (513)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC---CCChHHHHHH-----HHHHhhCC----CCEEEEEccCCHHHHHHHHHHhhcCC
Confidence 345567788889999999866322 4688876543 55544332 44455555333333443 44677
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.+++
T Consensus 93 ~~~v~i 98 (513)
T PRK00915 93 APRIHT 98 (513)
T ss_pred CCEEEE
Confidence 777654
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=3.5 Score=43.07 Aligned_cols=71 Identities=28% Similarity=0.349 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H-hHH--hcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L-ERM--KGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l-~~~--~e~g 309 (411)
++.+++++.+.++|+|.|++.|.. |++.|+...+ ++..+++..| ++|+-+|++.+... + ..+ .+.|
T Consensus 155 e~~~~~a~~l~~~Gad~I~IkDta-Gll~P~~~~~--------LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG 225 (499)
T PRK12330 155 EGFVEQAKRLLDMGADSICIKDMA-ALLKPQPAYD--------IVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG 225 (499)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCc-cCCCHHHHHH--------HHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC
Confidence 556677778889999999886654 5688877544 4556666543 68899999877652 3 433 4689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
+|.+.
T Consensus 226 ad~vD 230 (499)
T PRK12330 226 VDVVD 230 (499)
T ss_pred CCEEE
Confidence 99985
|
|
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.27 E-value=3.1 Score=40.76 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC------cc--cHhHHh
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN------GG--FLERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~------~~--~l~~~~ 306 (411)
+..++|++.+.++|...|+ .++..|+.+++..+-++++|++.+++. |..+++-+-+. ++ .++.+.
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IF-----tsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~ 88 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIF-----TSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQ 88 (360)
T ss_pred hhHHHHHHHHHHcCcccee-----eecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHH
Confidence 4456888999999998885 358889999999999999999999998 67778777765 22 378899
Q ss_pred cCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-C---CCCcHHH
Q 015201 307 GTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-L---VGTPEEA 382 (411)
Q Consensus 307 e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~---~~tp~En 382 (411)
+.|++++-+|...+..+..+.-.+.+.+.=| +-.+.+++-.++.....-.-|.+. |+. | .|...|.
T Consensus 89 e~G~~glRlD~gfS~eei~~ms~~~lkieLN---------~S~it~~l~~l~~~~an~~nl~~c-HNyYPr~yTGLS~e~ 158 (360)
T COG3589 89 ELGVDGLRLDYGFSGEEIAEMSKNPLKIELN---------ASTITELLDSLLAYKANLENLEGC-HNYYPRPYTGLSREH 158 (360)
T ss_pred HhhhhheeecccCCHHHHHHHhcCCeEEEEc---------hhhhHHHHHHHHHhccchhhhhhc-ccccCCcccCccHHH
Confidence 9999999999998888887765433333322 222334555555554442222221 232 2 3567788
Q ss_pred HHHHHHHHHhcCCC
Q 015201 383 VAHFFEVGKSMKYD 396 (411)
Q Consensus 383 i~a~~~a~~~yg~~ 396 (411)
+...-+..++|+-+
T Consensus 159 f~~kn~~fk~~~i~ 172 (360)
T COG3589 159 FKRKNEIFKEYNIK 172 (360)
T ss_pred HHHHHHHHHhcCCc
Confidence 88888888888743
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.27 E-value=2.9 Score=40.72 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+...+.++.+++.|+|+|++.-..|. .+|.++.++. .+...+.+.. .+|++.+..++.. -+ ....+
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v----~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEV----LEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHH----HHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHh
Confidence 34445666888999999988877774 7999988775 3444445542 3789999988853 23 55667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 98 ~Gad~il~ 105 (299)
T COG0329 98 LGADGILV 105 (299)
T ss_pred cCCCEEEE
Confidence 89999853
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.4 Score=40.02 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH-hCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc-cH---hHHh
Q 015201 235 QAIADYIIYQVE-SGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e-~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~-~l---~~~~ 306 (411)
+.+.++++.+++ .|+++|++....|. .||.++.++++ +..++.+.. .+|++.++... +. -+ ....
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~----~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVL----EIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHH----HHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHHH
Confidence 344456667788 99999988877774 79999887763 334444432 47888888443 33 23 5566
Q ss_pred cCCCcEEEc
Q 015201 307 GTGVDVIGL 315 (411)
Q Consensus 307 e~g~d~l~~ 315 (411)
+.|+|++.+
T Consensus 97 ~~Gad~v~v 105 (293)
T PRK04147 97 ELGYDAISA 105 (293)
T ss_pred HcCCCEEEE
Confidence 789999854
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.24 E-value=6.2 Score=38.31 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTGV 310 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g~ 310 (411)
+.+.++.+++.|+|++++....|. .+|.++.++++.-. .+.++. ..|++.|+.+++. -+ ....+.|+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~----~~~~~g---~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIA----VSTAKG---KVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHH----HHHhCC---CCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 345555777899999988777774 79999887765433 333332 4788888865433 23 44456787
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
|++.
T Consensus 101 dav~ 104 (296)
T TIGR03249 101 DGYL 104 (296)
T ss_pred CEEE
Confidence 7764
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=5.2 Score=36.85 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCEEEE-ecCCC-CCCCHHHHHHHHH--------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--
Q 015201 239 DYIIYQVESGAHCIQI-FDSWG-GQLPPHMWEQWSE--------------PYIREIVSLVRTKCPETPIVLYINGNGG-- 300 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i-~D~~~-~~iSp~~f~ef~~--------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~-- 300 (411)
+-++...++|||.+=+ +.+.. -++|+++.++... +-...+.+.+++. +. -+++.+|+..
T Consensus 14 eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~--~~-d~vQLHg~e~~~ 90 (210)
T PRK01222 14 EDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETV--PL-DLLQLHGDETPE 90 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhc--CC-CEEEECCCCCHH
Confidence 3456667889998743 33322 3899999888763 1233566666654 32 3556667654
Q ss_pred cHhHHhc-CCCcEE---EcCCCCCHHHHHHHhCC-CeeEE-------c-------------cCC-cCccCC--CHHHHHH
Q 015201 301 FLERMKG-TGVDVI---GLDWTVDMADGRKRLGN-DISVQ-------G-------------NVD-PACLFS--PLPALTD 352 (411)
Q Consensus 301 ~l~~~~e-~g~d~l---~~d~~~di~~~~~~~g~-~~~l~-------G-------------~vd-~~~L~g--t~eeV~~ 352 (411)
.+..+.+ .++.++ ++....++...++.++. +..+. | +++ |..|.| +||.|.+
T Consensus 91 ~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~~~~~p~~LAGGi~peNv~~ 170 (210)
T PRK01222 91 FCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPAGLAKPWILAGGLNPDNVAE 170 (210)
T ss_pred HHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhhccCCCEEEECCCCHHHHHH
Confidence 3555554 344444 23222234443332211 11111 1 010 111211 4554443
Q ss_pred HHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHHHHHhc
Q 015201 353 EIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 353 ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~a~~~y 393 (411)
. ++..++.|.=+++|=...+| -+++.+++|+++++.+
T Consensus 171 a----i~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~~ 208 (210)
T PRK01222 171 A----IRQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKSA 208 (210)
T ss_pred H----HHhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHhh
Confidence 3 33445556777777766444 4778888888877654
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=8.2 Score=37.79 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
++.+.+.|+..+.+.......+.. +++.++++.+++. +++.+.+ +.|... .++.+++.|++.+++.
T Consensus 79 ~~~~~~~g~~~i~l~gG~~~~~~~--------~~l~~l~~~i~~~-~~l~i~~-~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 79 AKKAYELGYRTIVLQSGEDPYYTD--------EKIADIIKEIKKE-LDVAITL-SLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred HHHHHHCCCCEEEEecCCCCCCCH--------HHHHHHHHHHHcc-CCceEEE-ecCCCCHHHHHHHHHcCCCEEEec
Confidence 344556799988776332223332 4567788888875 2544333 346543 5789999999988653
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=11 Score=39.03 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHhCCceeEEE--ecccHHHHHHHHHcCCCCccHHHHHH--HHhhCHH---HHHHHHH----HHHHHH
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLG--FVGAPWTIATYIVEGGTTRTYTTIKS--MCHTAPH---VLRTLLS----HLTQAI 237 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~--~~~gPft~a~~l~gg~~~~~~e~~l~--~l~~~Pe---~v~~ll~----~~~d~~ 237 (411)
+...++....|...+++++.++. .+..|-.+.. +..+ .+.+ +. .+++.|+ .+++++. .|.=..
T Consensus 193 ~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~-~~~~--~dav---LiG~~lm~~~d~~~~~~~L~~~~vKICGit~ 266 (454)
T PRK09427 193 LSIDLNRTRELAPLIPADVIVISESGIYTHAQVRE-LSPF--ANGF---LIGSSLMAEDDLELAVRKLILGENKVCGLTR 266 (454)
T ss_pred ceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHH-HHhc--CCEE---EECHHHcCCCCHHHHHHHHhccccccCCCCC
Confidence 33334555556666666654443 3345655433 2221 1111 11 2333332 3344422 233344
Q ss_pred HHHHHHHHHhCCCEEEE-ecC-CCCCCCHHHHHHHHH------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--c
Q 015201 238 ADYIIYQVESGAHCIQI-FDS-WGGQLPPHMWEQWSE------------PYIREIVSLVRTKCPETPIVLYINGNGG--F 301 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i-~D~-~~~~iSp~~f~ef~~------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~ 301 (411)
.+-++...++|||.+=+ +.+ +--.++|++.++... +-...+.+.+++.+ . -+++.+|+.. .
T Consensus 267 ~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~--l-D~vQLHG~e~~~~ 343 (454)
T PRK09427 267 PQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLS--L-AAVQLHGDEDQAY 343 (454)
T ss_pred HHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcC--C-CEEEeCCCCCHHH
Confidence 45567778999998743 433 334899999988764 22335555565542 2 3556677654 3
Q ss_pred HhHHhcC---CCcEE---EcCCC------------------------CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHH
Q 015201 302 LERMKGT---GVDVI---GLDWT------------------------VDMADGRKRLGNDISVQGNVDPACLFSPLPALT 351 (411)
Q Consensus 302 l~~~~e~---g~d~l---~~d~~------------------------~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~ 351 (411)
+..+.+. ++.+| ++... .|...+.........+.||+ +||.|.
T Consensus 344 ~~~l~~~~~~~~~iikai~v~~~~~~~~~~~~d~~LlDs~~GGtG~~~DW~~l~~~~~~p~iLAGGL-------~peNV~ 416 (454)
T PRK09427 344 IDALREALPKTCQIWKAISVGDTLPARDLQHVDRYLLDNGQGGTGQTFDWSLLPGQSLDNVLLAGGL-------NPDNCQ 416 (454)
T ss_pred HHHHHhhcCCCCeEEEEeecCchhhhhhhcCCCEEEEcCCCCCCCCccChHHhhhcccCCEEEECCC-------CHHHHH
Confidence 4555431 23333 22111 12222111111112222222 566665
Q ss_pred HHHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHHHHHhc
Q 015201 352 DEIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 352 ~ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~a~~~y 393 (411)
+.+ ..++-|.=+++|-...|| -+++.+++|+++++.|
T Consensus 417 ~ai-----~~~P~gVDVsSGVE~~pG~KD~~Ki~~Fi~~vr~~ 454 (454)
T PRK09427 417 QAA-----QLGCAGLDFNSGVESAPGIKDAQKLASVFQTLRAY 454 (454)
T ss_pred HHH-----hcCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhhC
Confidence 543 246667888888877666 5889999999999875
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=91.89 E-value=4.7 Score=38.94 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC-Ccc-cH---hHHh
Q 015201 235 QAIADYIIYQVES-GAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING-NGG-FL---ERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~-G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG-~~~-~l---~~~~ 306 (411)
+.+.++++.+++. |++++.+....|. .+|.++.++++ +...+.... .+|++.++.+ ++. -+ ....
T Consensus 21 ~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~----~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIA----EIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred HHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHH----HHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHH
Confidence 3445666778888 9999988887774 79998888763 333444432 4678877743 343 23 5566
Q ss_pred cCCCcEEE
Q 015201 307 GTGVDVIG 314 (411)
Q Consensus 307 e~g~d~l~ 314 (411)
+.|+|++.
T Consensus 94 ~~Gad~v~ 101 (288)
T cd00954 94 ELGYDAIS 101 (288)
T ss_pred HcCCCEEE
Confidence 78999874
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=91.87 E-value=3.4 Score=40.49 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+++|++..+.|. .+|.++.++++.- ..+.+. +.+|++.|..+... -+ ....+.
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~----~~~~~~---grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVAT----VVETVA---GRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHH----HHHHhC---CCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 3445566778899999998888774 7999998886543 333343 25788888876432 23 556678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 103 Gad~vlv 109 (309)
T cd00952 103 GADGTML 109 (309)
T ss_pred CCCEEEE
Confidence 9998754
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=9 Score=35.84 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG-----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL 302 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l 302 (411)
++.+.|...+-++++.+.|+|++ +.+.+++ -+.|+. .-++-.+++.+++.- ++|+-+..=-|-. -+
T Consensus 29 ~~~vid~A~~dA~~leegG~Dav-ivEN~gD~Pf~k~v~~~t-----vaaMa~iv~~v~r~v-~iPvGvNVLrNd~vaA~ 101 (263)
T COG0434 29 LEAVIDRAVRDAAALEEGGVDAV-IVENYGDAPFLKDVGPET-----VAAMAVIVREVVREV-SIPVGVNVLRNDAVAAL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCCCCCChHH-----HHHHHHHHHHHHHhc-cccceeeeeccccHHHH
Confidence 45556666777889999999998 5565553 344433 445666777766553 6776554433322 23
Q ss_pred hHHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc-c-CCCHHHHHHHHHHHHHHhCCCC
Q 015201 303 ERMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC-L-FSPLPALTDEIQRVVKCAGSRG 365 (411)
Q Consensus 303 ~~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~-L-~gt~eeV~~ev~~~i~~~~~~g 365 (411)
..-.-.|.+-+-+ |+. -.+.+.+.+++.++.+.-+++..- . ++++ .+.+.++..++....-+
T Consensus 102 ~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~v~dtver~~aDa 180 (263)
T COG0434 102 AIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEAVKDTVERGLADA 180 (263)
T ss_pred HHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCc-CHHHHHHHHHHccCCCE
Confidence 3333446555521 221 135556778888899999988853 2 3544 58888999998877667
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~ 390 (411)
.|++ |......+++|.++...+++
T Consensus 181 VI~t-G~~TG~~~d~~el~~a~~~~ 204 (263)
T COG0434 181 VIVT-GSRTGSPPDLEELKLAKEAV 204 (263)
T ss_pred EEEe-cccCCCCCCHHHHHHHHhcc
Confidence 7765 44444444555555554444
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.31 E-value=14 Score=35.30 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHh
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMK 306 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~ 306 (411)
+++.+.=.+.+++.++.|++.|||.|-+.-. .+++.=.+-+.|..+.+. +.. +.|+.+-+ -+...++.-.
T Consensus 17 ~~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~----~~~~eE~~r~~~~v~~l~----~~~-~~plsIDT-~~~~v~eaaL 86 (261)
T PRK07535 17 EAIEAKDAAFIQKLALKQAEAGADYLDVNAG----TAVEEEPETMEWLVETVQ----EVV-DVPLCIDS-PNPAAIEAGL 86 (261)
T ss_pred HHHHcCCHHHHHHHHHHHHHCCCCEEEECCC----CCchhHHHHHHHHHHHHH----HhC-CCCEEEeC-CCHHHHHHHH
Confidence 4445556678888899999999999866533 344332234555555543 332 56754322 2222455555
Q ss_pred cC--CCcEEE-cCCC---C-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-----CCeEEeCCCC
Q 015201 307 GT--GVDVIG-LDWT---V-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-----RGHILNLGHG 373 (411)
Q Consensus 307 e~--g~d~l~-~d~~---~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-----~gfIls~gc~ 373 (411)
+. |.++++ +... . .+.++.+++|-.++++-. +..-.-.|.++..+..++.++.+.. ..+|+-||-+
T Consensus 87 ~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~-~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~ 164 (261)
T PRK07535 87 KVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM-DDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVL 164 (261)
T ss_pred HhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 54 999885 4321 1 245566778866666542 2221224566666666666665432 4679999876
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=5.6 Score=41.55 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|+|.|-++-+. .|++.|+- .+++.+ ...+..+..+.......++...+.|++.+
T Consensus 23 ~e~K~~ia~~L~~~Gv~~IE~G~p~---~~~~d~e~-----v~~i~~----~~~~~~i~a~~r~~~~di~~a~~~g~~~v 90 (488)
T PRK09389 23 PEEKLEIARKLDELGVDVIEAGSAI---TSEGEREA-----IKAVTD----EGLNAEICSFARAVKVDIDAALECDVDSV 90 (488)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCc---CCHHHHHH-----HHHHHh----cCCCcEEEeecccCHHHHHHHHhCCcCEE
Confidence 3455677888899999998664332 46666543 233332 22133334444433335778888898887
Q ss_pred Ec
Q 015201 314 GL 315 (411)
Q Consensus 314 ~~ 315 (411)
++
T Consensus 91 ~i 92 (488)
T PRK09389 91 HL 92 (488)
T ss_pred EE
Confidence 64
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.7 Score=39.72 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++.+.++|++.|-++-+...-..| ..+...++++.+++.+++.++..++-.....++...+.|++.+
T Consensus 18 ~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i 91 (265)
T cd03174 18 TEDKLEIAEALDEAGVDSIEVGSGASPKAVP------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEV 91 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCcCccccc------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEE
Confidence 4555677778889999998765433220002 1233445566666654344443444332346888999999998
Q ss_pred EcCC-CC--------------CHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 314 GLDW-TV--------------DMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 314 ~~d~-~~--------------di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.+-. .. ++..+ .+..| +.+..++-... -.-+++++.+.++++.+.+ ...+.+...
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt 168 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDT 168 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechh
Confidence 6421 11 12222 12234 33444432211 1257888888888777654 334444322
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+ ....|+.+..+++.+++...
T Consensus 169 --~-G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 169 --V-GLATPEEVAELVKALREALP 189 (265)
T ss_pred --c-CCcCHHHHHHHHHHHHHhCC
Confidence 2 23557778888888887653
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=90.89 E-value=8.1 Score=37.50 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~g 309 (411)
+.++++.+++.|++++++....|. .+|.++..+++. ...+.+. +.+|++.|..++.. -+ ....+.|
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~----~~~~~~~---g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIE----NAIDQIA---GRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHH----HHHHHhC---CCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 345566777899999988887774 799998877654 3333343 25788888887643 23 4556789
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|++.+
T Consensus 96 ad~v~v 101 (294)
T TIGR02313 96 ADAAMV 101 (294)
T ss_pred CCEEEE
Confidence 999854
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.7 Score=42.16 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
+++.+.++.+.++|+|.|.+.|..|. ++|....++ ++.+++..+++++-+|.+.+... + ..+ .+.|+
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGV-GTPGQVRAV--------LEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCc-cCHHHHHHH--------HHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 45556667788899999988776664 788776553 44444444457899999988762 3 333 36799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 226 ~~id~ 230 (287)
T PRK05692 226 TVFDA 230 (287)
T ss_pred CEEEE
Confidence 98854
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.8 Score=40.45 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~ 312 (411)
+.++++.+.++|+|.|.+.|..|. ++|....+ +++.+++..+++++-+|.+.+... + .. -.+.|++.
T Consensus 139 ~~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~v~~--------lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 139 LLELAEALAEAGADIIYLADTVGI-MTPEDVAE--------LVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTS--S-HHHHHH--------HHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHcCCeEEEeeCccCC-cCHHHHHH--------HHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 334455666779999988887765 78876543 456666665557899999988763 3 33 33679999
Q ss_pred EEc
Q 015201 313 IGL 315 (411)
Q Consensus 313 l~~ 315 (411)
+..
T Consensus 210 id~ 212 (237)
T PF00682_consen 210 IDG 212 (237)
T ss_dssp EEE
T ss_pred EEc
Confidence 853
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=90.57 E-value=6.7 Score=38.93 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH---HHHH------HHHHHHHHHHHHHhhCCCCCEEE
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM---WEQW------SEPYIREIVSLVRTKCPETPIVL 293 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~---f~ef------~~Py~k~i~~~i~~~~~g~~~~~ 293 (411)
++-++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =.|| =.-+..++++.+++..|.-++.+
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~v 223 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGI 223 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEE
Confidence 333555566666677788899999998875433 3777721 1111 13556677888877643326777
Q ss_pred EecCC----------c-c----cHhHHhcCCCcEEEcCCC-C----------CHHHHHHHhCCCeeEEccCC
Q 015201 294 YINGN----------G-G----FLERMKGTGVDVIGLDWT-V----------DMADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 294 H~CG~----------~-~----~l~~~~e~g~d~l~~d~~-~----------di~~~~~~~g~~~~l~G~vd 339 (411)
-+.+. . . +++.+.+.|+|.+++... . ....+|+.++-.+...|+++
T Consensus 224 Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 224 RLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred EECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCC
Confidence 66532 1 1 235566779999987321 1 13445666654555566653
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=17 Score=35.00 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=.+-+.|.++.+.+ . +.++ =++-... .++.-.+.|
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~----~--~~~I--SIDT~~~~va~~al~aG 96 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSD----Q--MHRV--SIDSFQPETQRYALKRG 96 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHh----C--CCcE--EEECCCHHHHHHHHHcC
Confidence 455566778889999999887633 3489999877777888877653 2 3443 2222223 357777899
Q ss_pred CcEEE-cCCCCC--HHHHHHHhCCCeeEEccC-----CcCc-c--CCC-HHHHHHHHHHHHHHhC----C-CCeEEeCCC
Q 015201 310 VDVIG-LDWTVD--MADGRKRLGNDISVQGNV-----DPAC-L--FSP-LPALTDEIQRVVKCAG----S-RGHILNLGH 372 (411)
Q Consensus 310 ~d~l~-~d~~~d--i~~~~~~~g~~~~l~G~v-----d~~~-L--~gt-~eeV~~ev~~~i~~~~----~-~gfIls~gc 372 (411)
+++++ +....| +.++...++-.+++|=+- .+.. . +.+ -++|.++.++.++.+. + ...||-||-
T Consensus 97 adiINDVsg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGi 176 (279)
T PRK13753 97 VGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGM 176 (279)
T ss_pred CCEEEeCCCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC
Confidence 99985 433223 444445566667775431 1211 1 111 2345555555444432 2 589999999
Q ss_pred CCCC-CCcHHHHHHHH
Q 015201 373 GVLV-GTPEEAVAHFF 387 (411)
Q Consensus 373 ~i~~-~tp~Eni~a~~ 387 (411)
++.. .++.+|+.-+-
T Consensus 177 GF~k~k~~~~n~~ll~ 192 (279)
T PRK13753 177 GFFLSPAPETSLHVLS 192 (279)
T ss_pred CCCCCCChHHHHHHHH
Confidence 9852 45567766543
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=90.48 E-value=12 Score=35.81 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g 309 (411)
.++.++...++|+|++.+.-+.-...++ +-+..|++++++.. +.|++++.. |.. + .+..+.+.+
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~----~~l~~~~~~ia~~~-----~~pi~lYn~P~~~g~~ls~~~~~~L~~~p 154 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQ----EGLYAHFKAIAEAT-----DLPVILYNVPGRTGVNIEPETVLRLAEHP 154 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCH----HHHHHHHHHHHhcC-----CCCEEEEEChhHhCCCCCHHHHHHHhcCC
Confidence 3677778889999999876554332343 44668999998864 578877764 332 1 245555553
Q ss_pred CcEEEc-CCCCCH---HHHHHHhCCCeeEEccCCcC
Q 015201 310 VDVIGL-DWTVDM---ADGRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 310 ~d~l~~-d~~~di---~~~~~~~g~~~~l~G~vd~~ 341 (411)
++..+ +...|+ .++.+.+++++.++.+-|..
T Consensus 155 -~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~~ 189 (284)
T cd00950 155 -NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDAL 189 (284)
T ss_pred -CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChHh
Confidence 45444 222344 44556666677777666653
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=14 Score=35.68 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC----Cc-c--cHhHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING----NG-G--FLERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG----~~-~--~l~~~~e 307 (411)
+-.++.++...++|+|++.+.-+.-.-.|+ +-+.-|++++++.. +.|++++.+. .. . .+..+.+
T Consensus 83 ~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~----~~i~~~~~~ia~~~-----~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 83 AEAIELTKFAEKAGADGALVVTPYYNKPTQ----EGLYQHFKAIAEAT-----DLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHHc
Confidence 344566777888999999876654333444 44557888888765 4688777653 22 1 2344444
Q ss_pred CCCcEEEc-CCCCCHHH---HHHHhCCCeeEEccCCcC
Q 015201 308 TGVDVIGL-DWTVDMAD---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 308 ~g~d~l~~-d~~~di~~---~~~~~g~~~~l~G~vd~~ 341 (411)
.+ ++..+ +...|+.. +.+..+++..++.|-|..
T Consensus 154 ~p-~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 190 (292)
T PRK03170 154 HP-NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL 190 (292)
T ss_pred CC-CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh
Confidence 43 45444 33345544 444456666666666553
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=90.16 E-value=16 Score=34.97 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=86.0
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE-EecCCcc-c-HhH-------HhcCCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL-YINGNGG-F-LER-------MKGTGV 310 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~-H~CG~~~-~-l~~-------~~e~g~ 310 (411)
.+..++.|+|++.+.=.+|+ + ++.-.+--+-++.+.++++ |.|++. +.-|... . .+. =.|+|.
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs---~--~E~~~l~~l~~v~~ea~~~--G~Plla~~prG~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGS---E--YEHQSIKNIIQLVDAGLRY--GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEEEecCC---H--HHHHHHHHHHHHHHHHHHh--CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcC
Confidence 44577899999987666663 2 3344555578899999998 788755 4555421 1 222 237899
Q ss_pred cEEEcCCCC-CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-CCCCcHHHHHHHHH
Q 015201 311 DVIGLDWTV-DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-LVGTPEEAVAHFFE 388 (411)
Q Consensus 311 d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~~~tp~Eni~a~~~ 388 (411)
|++=+.+.- ++.++.+..+-.+.+.||=. .+.+++-+.+++.++.++ .|..+ |=+| +..-|.+-++|+..
T Consensus 173 DiVK~~y~~~~f~~vv~a~~vPVviaGG~k-----~~~~~~L~~v~~ai~aGa-~Gv~~--GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 173 QIIKTYYVEEGFERITAGCPVPIVIAGGKK-----LPERDALEMCYQAIDEGA-SGVDM--GRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CEEecCCCHHHHHHHHHcCCCcEEEeCCCC-----CCHHHHHHHHHHHHHcCC-ceeee--chhhhccCCHHHHHHHHHH
Confidence 999776543 45555554444455555432 266889999999999543 34443 4444 44455566666666
Q ss_pred HHHhc
Q 015201 389 VGKSM 393 (411)
Q Consensus 389 a~~~y 393 (411)
.+++-
T Consensus 245 IVh~~ 249 (264)
T PRK08227 245 VVHEN 249 (264)
T ss_pred HHhCC
Confidence 66543
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.12 E-value=2 Score=41.32 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++++++++.+.+.|+|.|.+.|..|. ++|....++ ++.+++..|++++-+|.+.+... + .. -.+.|+
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa 219 (274)
T cd07938 149 ERVAEVAERLLDLGCDEISLGDTIGV-ATPAQVRRL--------LEAVLERFPDEKLALHFHDTRGQALANILAALEAGV 219 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCc-cCHHHHHHH--------HHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 44556666777889999988777665 788776554 44444444567899999988752 3 33 336799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 220 ~~id~ 224 (274)
T cd07938 220 RRFDS 224 (274)
T ss_pred CEEEE
Confidence 98753
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.09 E-value=14 Score=35.65 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHH-HhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhC--CCCCEEEEecCCcccHhHHhcCC
Q 015201 234 TQAIADYIIYQV-ESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKC--PETPIVLYINGNGGFLERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~-e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~--~g~~~~~H~CG~~~~l~~~~e~g 309 (411)
++.-+++++.++ +.|++.|-+ +.+ .||+.| ...+++.+.-...+ .+..+.-+. .+..-++...++|
T Consensus 18 ~e~K~~i~~~L~~~~Gv~~IEv----g~~~~s~~e~-----~av~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~A~~~g 87 (280)
T cd07945 18 PSEKLNIAKILLQELKVDRIEV----ASARVSEGEF-----EAVQKIIDWAAEEGLLDRIEVLGFV-DGDKSVDWIKSAG 87 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEe----cCCCCCHHHH-----HHHHHHHHHhhhhccccCcEEEEec-CcHHHHHHHHHCC
Confidence 345567788875 459999865 334 789776 23344443221110 012222232 2222477778888
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.+++
T Consensus 88 ~~~i~i 93 (280)
T cd07945 88 AKVLNL 93 (280)
T ss_pred CCEEEE
Confidence 888754
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=90.09 E-value=3.7 Score=40.60 Aligned_cols=134 Identities=20% Similarity=0.350 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCEEEEecCCC-CCCC----HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-
Q 015201 227 RTLLSHLTQAIADYIIYQVESG--AHCIQIFDSWG-GQLP----PHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN- 298 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G--~d~i~i~D~~~-~~iS----p~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~- 298 (411)
.++.+.+.++....++++.++| +|.|+++.-.. +|+- +..|.. +.-+++.-++++++..|++++++|+..-
T Consensus 102 ~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~-~a~ll~ag~~AVr~~~p~~kV~lH~~~~~ 180 (332)
T PF07745_consen 102 DQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDN-LAKLLNAGIKAVREVDPNIKVMLHLANGG 180 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHH-HHHHHHHHHHHHHTHSSTSEEEEEES-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHH-HHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 4566677888888889999988 57888886433 3554 455544 4556777788899888889999998743
Q ss_pred -c---c-cHhHHhcCC--CcEEEcCC----CC-------CHHHHHHHhCCCeeEE--c------cCCcCc-c--------
Q 015201 299 -G---G-FLERMKGTG--VDVIGLDW----TV-------DMADGRKRLGNDISVQ--G------NVDPAC-L-------- 343 (411)
Q Consensus 299 -~---~-~l~~~~e~g--~d~l~~d~----~~-------di~~~~~~~g~~~~l~--G------~vd~~~-L-------- 343 (411)
. . +++.+...| +|++.+.. .. .+..+.++|++++.+. | +-|... .
T Consensus 181 ~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~ 260 (332)
T PF07745_consen 181 DNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLIS 260 (332)
T ss_dssp SHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGT
T ss_pred chHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccC
Confidence 2 2 457777754 67775431 11 3566788898766662 2 001110 0
Q ss_pred --CCCHHHHHHHHHHHHHHh
Q 015201 344 --FSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 344 --~gt~eeV~~ev~~~i~~~ 361 (411)
--|++.-++.++++++..
T Consensus 261 ~yp~t~~GQ~~~l~~l~~~v 280 (332)
T PF07745_consen 261 GYPATPQGQADFLRDLINAV 280 (332)
T ss_dssp TS-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 137888778777777754
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=90.05 E-value=12 Score=38.93 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 248 GAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 248 G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
|+..+++.|+.-+ .++ ++.+++++.+++. ++........+.+ .++.+++.|+..+++
T Consensus 245 ~~~~i~f~Dd~f~-~~~--------~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 245 EVREFFFDDDTFT-DDK--------PRAEEIARKLGPL--GVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred CCcEEEEeCCCCC-CCH--------HHHHHHHHHHhhc--CceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 7788877776432 233 4566777777765 4443333333343 478899999998865
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=12 Score=36.02 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~~d 316 (411)
.++...+.|+..+.+.++.-+ ++. ....|+.++++.+++.+++ +.+|.| |... .+..+++.|++.++.+
T Consensus 48 ~a~~a~~~g~~~~~lv~sg~~-~~~-----~~~e~~~ei~~~ik~~~p~--l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 48 EAKMAKANGALGFCLVTSGRG-LDD-----KKLEYVAEAAKAVKKEVPG--LHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred HHHHHHHCCCCEEEEEeccCC-CCc-----ccHHHHHHHHHHHHhhCCC--cEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 333444569988877544333 232 2457888999999987433 345655 5544 4788999999999753
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=11 Score=35.72 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=88.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC--C
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW--T 318 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~--~ 318 (411)
++...++|+..+ ....|-..-||.-|+.+....++.+.+..++. |++++- .--+...++.+.+ .+|++-+.. .
T Consensus 35 a~~~~~~g~~~~-r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~--Gl~~~T-ev~d~~~v~~~~e-~vdilqIgs~~~ 109 (250)
T PRK13397 35 ASSAKKLGYNYF-RGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF--GLLSVS-EIMSERQLEEAYD-YLDVIQVGARNM 109 (250)
T ss_pred HHHHHHcCCCEE-EecccCCCCCCcccCCCCHHHHHHHHHHHHHc--CCCEEE-eeCCHHHHHHHHh-cCCEEEECcccc
Confidence 334667898876 44555567899999999999899998888887 677543 2222335777777 599987643 2
Q ss_pred CCHHHHH--HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH---HHHHHHHHHHhc
Q 015201 319 VDMADGR--KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE---AVAHFFEVGKSM 393 (411)
Q Consensus 319 ~di~~~~--~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E---ni~a~~~a~~~y 393 (411)
.+..-++ .+.|..+.+-- -...|++|+...+..+.+. |...++|.-=|....+++.+ |+.++...-+.+
T Consensus 110 ~n~~LL~~va~tgkPVilk~-----G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 110 QNFEFLKTLSHIDKPILFKR-----GLMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT 183 (250)
T ss_pred cCHHHHHHHHccCCeEEEeC-----CCCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHh
Confidence 2333333 22332221111 1236999999999887754 45578887644444445544 555555444446
Q ss_pred C
Q 015201 394 K 394 (411)
Q Consensus 394 g 394 (411)
+
T Consensus 184 ~ 184 (250)
T PRK13397 184 D 184 (250)
T ss_pred C
Confidence 5
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=12 Score=36.37 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHh-cCCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMK-GTGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~-e~g~d~ 312 (411)
++.++...++|+|++.+.-++-...|+ +-+.-|++.+.+.. +.|++++.+.... .+..+. +.+ ++
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~----~~i~~~f~~va~~~-----~lpi~lYn~~g~~l~~~~l~~L~~~~p-ni 160 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQ----EGLAAHVEAVCKST-----DLGVIVYNRDNAVLTADTLARLAERCP-NL 160 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEcCCCCCCCHHHHHHHHhhCC-CE
Confidence 456667788999999886665444454 55667888888765 4677665554322 245555 543 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEccCC
Q 015201 313 IGL-DWTVDMAD---GRKRLGNDISVQGNVD 339 (411)
Q Consensus 313 l~~-d~~~di~~---~~~~~g~~~~l~G~vd 339 (411)
+.+ +...|+.. +.+..+++..++.|.|
T Consensus 161 ~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d 191 (303)
T PRK03620 161 VGFKDGVGDIELMQRIVRALGDRLLYLGGLP 191 (303)
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCeEEEeCCC
Confidence 555 33446554 4445566666666654
|
|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=8.1 Score=37.97 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQV-ESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~-e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.+++-++.+.+--.++++++. ++|+|.|.+....++ --+++.|.+ ..+++.+.+ ++|+++-+||
T Consensus 63 ~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~----~Vk~V~eav-----d~PL~Id~s~ 133 (319)
T PRK04452 63 PEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAK----TVEEVLQAV-----DVPLIIGGSG 133 (319)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHH----HHHHHHHhC-----CCCEEEecCC
Confidence 44566666666555577888887 899999988754443 235555544 333443333 7899899999
Q ss_pred Cc----ccHhHHhc-C-CCc-EE-Ec--CCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-CC
Q 015201 298 NG----GFLERMKG-T-GVD-VI-GL--DWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-RG 365 (411)
Q Consensus 298 ~~----~~l~~~~e-~-g~d-~l-~~--d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~g 365 (411)
|. ..++.-.+ + |-. .+ +. +..-.+..+.+.||-.+....-.| .+.. +..-+.+...| + ..
T Consensus 134 n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA~~y~~~Vva~s~~D-------ln~a-k~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 134 NPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAAMAYGHAVIAWSPLD-------INLA-KQLNILLTELGVPRER 205 (319)
T ss_pred CCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHHHHhCCeEEEEcHHH-------HHHH-HHHHHHHHHcCCCHHH
Confidence 63 23544333 3 232 33 22 222235566677775444433122 2222 22223333444 3 67
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+++-|+. .+-++..|.....++..|..
T Consensus 206 IviDP~~-~~lg~g~e~~~~~~e~IR~a 232 (319)
T PRK04452 206 IVMDPTT-GALGYGIEYSYSVMERIRLA 232 (319)
T ss_pred EEEeCCc-ccccCCHHHHHHHHHHHHHH
Confidence 8999986 34455555555555555544
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.3 Score=43.92 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..+.++.+.++|+|.|++.|..| ++.|....+ ++..+++.. ++|+-+|.+.+... + ..+ .+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 154 DYFVKLAKEMQEMGADSICIKDMAG-ILTPYVAYE--------LVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCC
Confidence 4445666677889999998876554 588877554 566666654 57899999887652 3 333 36899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 224 d~vD~ 228 (448)
T PRK12331 224 DIIDT 228 (448)
T ss_pred CEEEe
Confidence 99853
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=89.51 E-value=15 Score=36.33 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHHHHh-CCCEEEEecCCCC---C---------------CCHHHHHHHH-----------HHHHHHHHHHHHhhCCC
Q 015201 239 DYIIYQVES-GAHCIQIFDSWGG---Q---------------LPPHMWEQWS-----------EPYIREIVSLVRTKCPE 288 (411)
Q Consensus 239 ~~~~~~~e~-G~d~i~i~D~~~~---~---------------iSp~~f~ef~-----------~Py~k~i~~~i~~~~~g 288 (411)
+.+..+++. +++.+.+-|..-+ + +|++.+++++ .+..+++++..+++ |
T Consensus 99 ~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~A~~~--g 176 (325)
T cd01306 99 PELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARAR--G 176 (325)
T ss_pred HHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHC--C
Confidence 334445543 5888888885432 3 5666655553 36677888999988 7
Q ss_pred CCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHH--HhCCCeeEEccCCcCccC-CCHHHHHHHHHHHHHHhCCCC
Q 015201 289 TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRK--RLGNDISVQGNVDPACLF-SPLPALTDEIQRVVKCAGSRG 365 (411)
Q Consensus 289 ~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~--~~g~~~~l~G~vd~~~L~-gt~eeV~~ev~~~i~~~~~~g 365 (411)
+|+..|.+.....++...+.|+++.. +.++...++. ..|- .+++| . |..+. ++... ...++++++.+ -.
T Consensus 177 l~vasH~d~~~~~v~~a~~~Gv~~~E--~p~t~e~a~~a~~~G~-~vv~g-a-pn~lrg~s~~g-~~~~~~ll~~G--v~ 248 (325)
T cd01306 177 IPLASHDDDTPEHVAEAHELGVVISE--FPTTLEAAKAARELGL-QTLMG-A-PNVVRGGSHSG-NVSARELAAHG--LL 248 (325)
T ss_pred CcEEEecCCChHHHHHHHHCCCeecc--CCCCHHHHHHHHHCCC-EEEec-C-cccccCccccc-cHhHHHHHHCC--Ce
Confidence 89999987765678888888988764 3445444443 3343 33444 2 33333 22111 12244455432 24
Q ss_pred eEEeCCCC
Q 015201 366 HILNLGHG 373 (411)
Q Consensus 366 fIls~gc~ 373 (411)
.++++++.
T Consensus 249 ~al~SD~~ 256 (325)
T cd01306 249 DILSSDYV 256 (325)
T ss_pred EEEEcCCC
Confidence 68888874
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=89.44 E-value=21 Score=35.14 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~ 314 (411)
++.++.+.+.|+..+++.....+.-.+ -.+++.++++.+++. .++. ++.+ |... .+..+++.|++.++
T Consensus 97 ~~~~~~~~~~g~~~~~l~~~g~~p~~~------~~~~~~e~i~~i~~~-~~i~--~~~~~g~l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 97 IEAAKEAIEEGAGTFCIVASGRGPSGK------EVDQVVEAVKAIKEE-TDLE--ICACLGLLTEEQAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHHHCCCCEEEEEecCCCCCch------HHHHHHHHHHHHHhc-CCCc--EEecCCcCCHHHHHHHHHhCCCEEe
Confidence 333444566787766555433322111 136778888888875 2432 2333 4443 46889999999886
Q ss_pred cC
Q 015201 315 LD 316 (411)
Q Consensus 315 ~d 316 (411)
+.
T Consensus 168 ~~ 169 (336)
T PRK06256 168 HN 169 (336)
T ss_pred cC
Confidence 53
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=89.27 E-value=10 Score=39.66 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHH
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWE 268 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ 268 (411)
+--+++++.+.++|+|.|-++-+ -.|+..|+
T Consensus 23 e~K~~ia~~L~~~GV~~IEvG~p---~~s~~d~e 53 (494)
T TIGR00973 23 EEKLQIALALERLGVDIIEAGFP---VSSPGDFE 53 (494)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC---CCCHHHHH
Confidence 44567788889999999865322 24676664
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=89.18 E-value=2 Score=41.55 Aligned_cols=73 Identities=16% Similarity=0.296 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++.+....|. .+|.+++++++ +...+.++. .+|++.++-+... -+ ....+
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELL----EIVVEAAAG---RVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHH----HHHHHHHTT---SSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHH----HHHHHHccC---ceEEEecCcchhHHHHHHHHHHHhh
Confidence 44456677888999999988887774 79999987763 344555543 5788877665432 23 55667
Q ss_pred CCCcEEE
Q 015201 308 TGVDVIG 314 (411)
Q Consensus 308 ~g~d~l~ 314 (411)
.|+|++.
T Consensus 95 ~Gad~v~ 101 (289)
T PF00701_consen 95 AGADAVL 101 (289)
T ss_dssp TT-SEEE
T ss_pred cCceEEE
Confidence 8999874
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=89.18 E-value=5.4 Score=38.39 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+++|++....|. .+|.++.++.+ +...+.+.. .+|++.|+.++.. -+ ....+.
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~----~~~~~~~~~---~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 23 AYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGG---KIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHH----HHHHHHhCC---CCcEEEECCCccHHHHHHHHHHHHHc
Confidence 3445666778899999988887774 79999888753 333444432 4788887766432 23 445678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 96 Gadav~~ 102 (280)
T PLN02417 96 GMHAALH 102 (280)
T ss_pred CCCEEEE
Confidence 9998754
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=88.99 E-value=11 Score=37.70 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLD 316 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d 316 (411)
+++.++.+.+.|+..+. ...+-.--||.-|+.+....++.+.+..++. |++++- ..-+...++.+.++ +|++-+.
T Consensus 134 ~~~~A~~lk~~g~~~~r-~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~--Gl~~~t-~v~d~~~~~~l~~~-vd~lkI~ 208 (360)
T PRK12595 134 VEAVAKALKAKGLKLLR-GGAFKPRTSPYDFQGLGVEGLKILKQVADEY--GLAVIS-EIVNPADVEVALDY-VDVIQIG 208 (360)
T ss_pred HHHHHHHHHHcCCcEEE-ccccCCCCCCccccCCCHHHHHHHHHHHHHc--CCCEEE-eeCCHHHHHHHHHh-CCeEEEC
Confidence 33445556678887653 3334456777889999999999999998887 677543 22333357778888 8988664
Q ss_pred C--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CCCC-C-CCCcHHHHHHHHHH
Q 015201 317 W--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GHGV-L-VGTPEEAVAHFFEV 389 (411)
Q Consensus 317 ~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc~i-~-~~tp~Eni~a~~~a 389 (411)
. ..+..-+++ ..|..+.+-- -+..|.+|+...+..+... |...++|.- |... | ++-..-|+.++...
T Consensus 209 s~~~~n~~LL~~~a~~gkPVilk~-----G~~~t~~e~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 209 ARNMQNFELLKAAGRVNKPVLLKR-----GLSATIEEFIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred cccccCHHHHHHHHccCCcEEEeC-----CCCCCHHHHHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 2 234433333 2332222211 1236999999998888754 455788875 3322 2 11112277777765
Q ss_pred HHhcCC
Q 015201 390 GKSMKY 395 (411)
Q Consensus 390 ~~~yg~ 395 (411)
-+.|+.
T Consensus 283 k~~~~~ 288 (360)
T PRK12595 283 KQETHL 288 (360)
T ss_pred HHHhCC
Confidence 555763
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.9 Score=40.33 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d 311 (411)
++.++++.+.++|++.|.+.|..|. ++|....+ +++.+++..|+.++-+|.+-+... + .. -.+.|++
T Consensus 148 ~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~--------l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 148 YVFQLVDFLSDLPIKRIMLPDTLGI-LSPFETYT--------YISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCC-CCHHHHHH--------HHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 5556666778889999988777665 77876444 455555544567888999887652 3 33 3467999
Q ss_pred EEE
Q 015201 312 VIG 314 (411)
Q Consensus 312 ~l~ 314 (411)
.++
T Consensus 219 ~vd 221 (280)
T cd07945 219 GLH 221 (280)
T ss_pred EEE
Confidence 885
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.58 E-value=17 Score=33.50 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=76.6
Q ss_pred HHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE--EEEecCCcc-cHhHHhcCCCcEEEcCC----
Q 015201 245 VESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI--VLYINGNGG-FLERMKGTGVDVIGLDW---- 317 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~--~~H~CG~~~-~l~~~~e~g~d~l~~d~---- 317 (411)
.+.+.|.|+++.+ .+|+.+ +.+++.. +.++ .++.-.... .........+|.+-+|.
T Consensus 72 ~~~~ld~VQlHG~----e~~~~~------------~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~ 134 (208)
T COG0135 72 EELGLDAVQLHGD----EDPEYI------------DQLKEEL-GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPG 134 (208)
T ss_pred HhcCCCEEEECCC----CCHHHH------------HHHHhhc-CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCC
Confidence 3567899998655 555543 3444432 2344 334433333 22333344566665543
Q ss_pred -------CCCHHHHHHH-hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC-cHHHHHHHHH
Q 015201 318 -------TVDMADGRKR-LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT-PEEAVAHFFE 388 (411)
Q Consensus 318 -------~~di~~~~~~-~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t-p~Eni~a~~~ 388 (411)
..|...+... ...+..+.||++| +.|.+.|+...+-|.=+|+|-...||. +++.++++++
T Consensus 135 ~~GGtG~~fDW~~l~~~~~~~~~~LAGGL~p-----------~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~ 203 (208)
T COG0135 135 LPGGTGQTFDWNLLPKLRLSKPVMLAGGLNP-----------DNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFFE 203 (208)
T ss_pred CCCCCCcEECHHHhccccccCCEEEECCCCH-----------HHHHHHHHhcCCceEEeccccccCCCCCCHHHHHHHHH
Confidence 1355565554 5566888898887 456677777666788899998888775 7899999999
Q ss_pred HHHhc
Q 015201 389 VGKSM 393 (411)
Q Consensus 389 a~~~y 393 (411)
.++.+
T Consensus 204 ~vk~~ 208 (208)
T COG0135 204 AVKRA 208 (208)
T ss_pred HHhcC
Confidence 99864
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=2.6 Score=43.70 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++.++.++.+.++|+|.|++.|..| ++.|....+ ++..+++.. ++|+-+|.+.+... + ..+ .+.|+
T Consensus 153 e~~~~~a~~l~~~Gad~I~i~Dt~G-~l~P~~v~~--------Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 153 EYYLEFARELVDMGVDSICIKDMAG-LLTPKRAYE--------LVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccC-CcCHHHHHH--------HHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 5556667778899999998877655 578876544 455666554 47899999887652 3 433 36799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 223 d~vD 226 (467)
T PRK14041 223 DMFD 226 (467)
T ss_pred CEEE
Confidence 9985
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=19 Score=37.78 Aligned_cols=32 Identities=3% Similarity=-0.126 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHH
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQ 269 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~e 269 (411)
+--+++++.+.++|+|.|-++- .-.||++++-
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~~e~e~ 137 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF---PGSSEEEFEA 137 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCCCHHHHHH
Confidence 3445677888899999886633 2467888764
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=88.30 E-value=3.2 Score=39.19 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~ 312 (411)
+.+.++.+.++|++.|.+.|..| .++|+.++++ ++.+++..+++++-+|.+-+... + .. -.+.|++.
T Consensus 148 l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~l--------i~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~ 218 (265)
T cd03174 148 VLEVAKALEEAGADEISLKDTVG-LATPEEVAEL--------VKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADR 218 (265)
T ss_pred HHHHHHHHHHcCCCEEEechhcC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCE
Confidence 34555567788999998887755 5999887765 44444444347889999988752 3 22 23579988
Q ss_pred EE
Q 015201 313 IG 314 (411)
Q Consensus 313 l~ 314 (411)
+.
T Consensus 219 id 220 (265)
T cd03174 219 VD 220 (265)
T ss_pred EE
Confidence 74
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.14 E-value=3.4 Score=39.33 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+.+.+.++...++|+|.|.+.|..|. +.|+...++ ++.++++.+.+++-+|.+-+... + .. -.+.|+
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa 211 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGA-MLPDDVRER--------VRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGA 211 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC-cCHHHHHHH--------HHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCC
Confidence 34555666777899999988777765 788775553 44555544234789999988652 2 22 336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 212 ~~vd 215 (263)
T cd07943 212 TRID 215 (263)
T ss_pred CEEE
Confidence 9874
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=88.11 E-value=11 Score=38.69 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=76.6
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEE--EecCCc-ccHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVL--YINGNG-GFLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~--H~CG~~-~~l~~~~e~g~d~l~~d 316 (411)
+++.+.++|+|++.+.... +.. ..+++++.++++ |.++++ .+|... ..+....+.|+|.+.+.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~----~~~--------~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLA----DDS--------TIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecCC----ChH--------HHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 7778899999999765321 110 135677788876 555554 244332 23555677899998643
Q ss_pred CC--------CC---HHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHH
Q 015201 317 WT--------VD---MADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAH 385 (411)
Q Consensus 317 ~~--------~d---i~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a 385 (411)
.. .. +.++++.++-.+.+.|||++ +.+.++++.+. .++++++. =+...-|.+.+++
T Consensus 139 pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI~~-----------~n~~~~l~aGA-dgv~vGsa-I~~~~d~~~~~~~ 205 (430)
T PRK07028 139 VGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGLDA-----------ETAAKAVAAGA-DIVIVGGN-IIKSADVTEAARK 205 (430)
T ss_pred eccchhhcCCChHHHHHHHHhhCCCcEEEECCCCH-----------HHHHHHHHcCC-CEEEEChH-HcCCCCHHHHHHH
Confidence 21 11 33444444444667787765 23455555433 35555544 1223346677888
Q ss_pred HHHHHHhcCCCCCC
Q 015201 386 FFEVGKSMKYDNSS 399 (411)
Q Consensus 386 ~~~a~~~yg~~~~~ 399 (411)
+.+..++|-.-+++
T Consensus 206 l~~~i~~~~~~~~~ 219 (430)
T PRK07028 206 IREAIDSGKPVKID 219 (430)
T ss_pred HHHHHhccCCcccc
Confidence 88888777554443
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=88.09 E-value=15 Score=35.35 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC-----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-----------
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG-----GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN----------- 298 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~-----~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~----------- 298 (411)
+..+++++.+.++|++.|-++-+.. .+++.+.|+. ++.+.+..++.++..++.|.
T Consensus 21 ~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~---------i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~ 91 (275)
T cd07937 21 EDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWER---------LRELRKAMPNTPLQMLLRGQNLVGYRHYPDD 91 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHH---------HHHHHHhCCCCceehhcccccccCccCCCcH
Confidence 4445567888899999886654321 1344444332 33333332345666676652
Q ss_pred -cc-cHhHHhcCCCcEEEcC-CCCCHHHH------HHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 299 -GG-FLERMKGTGVDVIGLD-WTVDMADG------RKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 299 -~~-~l~~~~e~g~d~l~~d-~~~di~~~------~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
.. .++...+.|++.+.+- ...|+..+ .+..|. .+..+++... -.-+++.+.+.++++.+.+.. .+
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~---~i 166 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK--HVEGAICYTGSPVHTLEYYVKLAKELEDMGAD---SI 166 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC---EE
Confidence 11 3566778899998653 33344332 233453 3334554322 236888888888887775422 33
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+...++. -..|+.+..+++.+++.
T Consensus 167 ~l~DT~G-~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 167 CIKDMAG-LLTPYAAYELVKALKKE 190 (275)
T ss_pred EEcCCCC-CCCHHHHHHHHHHHHHh
Confidence 3333333 33467788888888764
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=3.1 Score=43.08 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g 309 (411)
.++..+.++.+.++|+|.|++.|..| ++.|+...+ +++.+++. +++|+-+|.+.+... + .. -.+.|
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~IkDtaG-~l~P~~v~~--------Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAG 231 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSICIKDMAG-ILTPKAAKE--------LVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAG 231 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC-CcCHHHHHH--------HHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcC
Confidence 35666777788899999998866554 588877555 44455554 368899999887652 3 33 34689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 232 ad~vD 236 (468)
T PRK12581 232 ADRID 236 (468)
T ss_pred CCEEE
Confidence 99984
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=87.94 E-value=20 Score=34.19 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCcccH
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWGG-----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGGFL 302 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~~l 302 (411)
++.+.+..++-++++.+.|+|+|.+ +.+++ -++|+. .-.+-+++..+++.. .+|+- +..++...-+
T Consensus 23 ~~~i~e~A~~ea~~l~~~GvD~viv-eN~~d~P~~~~~~p~t-----va~m~~i~~~v~~~~-~~p~GvnvL~nd~~aal 95 (257)
T TIGR00259 23 LNAVIDKAWKDAMALEEGGVDAVMF-ENFFDAPFLKEVDPET-----VAAMAVIAGQLKSDV-SIPLGINVLRNDAVAAL 95 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEE-ecCCCCCCcCCCCHHH-----HHHHHHHHHHHHHhc-CCCeeeeeecCCCHHHH
Confidence 5566677788889999999999965 44443 244443 345667777777654 34542 2333333335
Q ss_pred hHHhcCCCcEEEc---------CCC------CCHHHHHHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 303 ERMKGTGVDVIGL---------DWT------VDMADGRKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 303 ~~~~e~g~d~l~~---------d~~------~di~~~~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
..-...|.+-+-+ |+. -.+...++.++.++.+..+|.+.. -.-..-.+.+.++..+..+..-+.
T Consensus 96 ~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDav 175 (257)
T TIGR00259 96 AIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAV 175 (257)
T ss_pred HHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEE
Confidence 5444566655521 221 145567888898899999998852 111122355556666655543344
Q ss_pred EEe
Q 015201 367 ILN 369 (411)
Q Consensus 367 Ils 369 (411)
|++
T Consensus 176 ivt 178 (257)
T TIGR00259 176 ILS 178 (257)
T ss_pred EEC
Confidence 443
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.90 E-value=8.5 Score=39.53 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCcc-c-H
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNGG-F-L 302 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~~-~-l 302 (411)
..++.++.....+.+..+.++||..|++.++.-.+ +.-+. ...+++.+..+.+.-.+..+++-. -|+.. . .
T Consensus 179 lsLl~kiLPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~-----l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a~ 253 (765)
T KOG2263|consen 179 LSLLPKILPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEK-----LQAFKGAYAELESTLSGLNVLLATYFADVPAEAY 253 (765)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHH-----HHHHHHHHHHHHhhccccceeehhhhccCCHHHH
Confidence 56788888888999999999999999998886542 33322 223344444444322122333322 35554 3 5
Q ss_pred hHHhcC-CCcEEEcCC---CCCHHHHHHHhCC-CeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 303 ERMKGT-GVDVIGLDW---TVDMADGRKRLGN-DISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 303 ~~~~e~-g~d~l~~d~---~~di~~~~~~~g~-~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
+.+..+ |+.++++|- .-.+..++..+|. ++.+.|-||-..+ ..+-..--.-+.+++...|..+.+++++|++.
T Consensus 254 ~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~GvVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlL 332 (765)
T KOG2263|consen 254 KTLKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLL 332 (765)
T ss_pred HHHhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEEEeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhh
Confidence 667776 488888764 2357777888875 5666788887654 34444455666777888888899999999974
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=87.63 E-value=3.1 Score=44.42 Aligned_cols=70 Identities=26% Similarity=0.282 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..+.++.+.++|+|.|++.|..|. +.|.... +++..+++.. ++|+-+|++-+... + ..+ .+.|+
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~-~~P~~v~--------~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGI-LTPKAAY--------ELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGA 218 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCC-cCHHHHH--------HHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCC
Confidence 45566677888899999988776665 7776643 4455666554 47888999877652 3 333 36799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 219 ~~vd 222 (582)
T TIGR01108 219 DGID 222 (582)
T ss_pred CEEE
Confidence 9985
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=87.60 E-value=2.9 Score=44.71 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++.++.++.+.++|+|.|++.|..|. +.|... .++++.+++.. ++|+-+|++.+... + .. -.+.|+
T Consensus 154 ~~~~~~a~~l~~~Gad~I~i~Dt~G~-~~P~~~--------~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 154 EKYVELAKELEEMGCDSICIKDMAGL-LTPYAA--------YELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCC-cCHHHH--------HHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCC
Confidence 55566777888899999988877665 777765 44566666654 47889999877652 3 33 336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 224 d~vD 227 (592)
T PRK09282 224 DIID 227 (592)
T ss_pred CEEE
Confidence 9984
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=87.57 E-value=13 Score=34.52 Aligned_cols=126 Identities=11% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhc-CC-CcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKG-TG-VDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e-~g-~d~l~ 314 (411)
+|++.+.++|+|.|.++--. .+...++++.+|+. |....+-.+-.+. .++.+.+ .. +-+++
T Consensus 72 ~~i~~~~~~gad~i~~H~Ea-------------~~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 72 RIIPDFAKAGASMITFHVEA-------------SEHVDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHHHHhCCCEEEEcccC-------------cccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCeEEEEE
Confidence 56678889999999875332 13467788999998 5556555555554 4544443 32 22234
Q ss_pred cCCCC-----------CHHHHHHHhCC-----CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC
Q 015201 315 LDWTV-----------DMADGRKRLGN-----DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGT 378 (411)
Q Consensus 315 ~d~~~-----------di~~~~~~~g~-----~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t 378 (411)
++.+. .+.++++...+ .+.+-|||++ +.++++++.+ ..+++++++ =+..+-
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~-----------eni~~l~~aG-Ad~vVvGSa-If~~~d 203 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV-----------DNIREIAEAG-ADMFVAGSA-IFGQPD 203 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCH-----------HHHHHHHHcC-CCEEEEeHH-HhCCCC
Confidence 43211 25555555431 2556777765 3445555543 347777765 122334
Q ss_pred cHHHHHHHHHHHHh
Q 015201 379 PEEAVAHFFEVGKS 392 (411)
Q Consensus 379 p~Eni~a~~~a~~~ 392 (411)
+.++++.+.+..++
T Consensus 204 ~~~~i~~l~~~~~~ 217 (220)
T PRK08883 204 YKAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777766554
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.44 E-value=4.2 Score=39.01 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
+++.++++.+.++|++.|.+.|..|. ++|+...+++ +.+++..|++++-+|.+-+... + .. -.+.|+
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~v~~lv--------~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa 221 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGG-TLPHEIAEIV--------KEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGA 221 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHHH--------HHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCC
Confidence 33444555666789999988777765 8887765544 4555444457899999987652 2 22 235799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.++
T Consensus 222 ~~id 225 (273)
T cd07941 222 TQVQ 225 (273)
T ss_pred CEEE
Confidence 9885
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.36 E-value=3.7 Score=39.26 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC--CCEEEEecCCccc-H---hHHhcCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE--TPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g--~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
++.+.++.+.++|++.|.+.|..|. +.|+...++ ++.+++..++ +++-+|.+-+... + -.-.+.|
T Consensus 144 ~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG 214 (268)
T cd07940 144 FLIEVVEAAIEAGATTINIPDTVGY-LTPEEFGEL--------IKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAG 214 (268)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCC-CCHHHHHHH--------HHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhC
Confidence 3344555667789999988777765 788776653 4445444433 6889999887652 2 2233679
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 215 ~~~iD 219 (268)
T cd07940 215 ARQVE 219 (268)
T ss_pred CCEEE
Confidence 99874
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit | Back alignment and domain information |
|---|
Probab=87.26 E-value=18 Score=36.42 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQV-ESGAHCIQIFDSWGG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~-e~G~d~i~i~D~~~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.+++-++.+.+--.++.+..+ +.|+|.|.+....++ -=||+.|-+- .|++.+.+ ++|+++-+||
T Consensus 127 ~~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~----vk~V~~av-----~vPLIL~gsg 197 (389)
T TIGR00381 127 PKPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKV----LEDVLQAV-----DVPIVIGGSG 197 (389)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHH----HHHHHHhC-----CCCEEEeCCC
Confidence 45566666666644457777776 689999998865553 3577666543 23333333 6899999999
Q ss_pred Ccc-c---HhHHhc-C-CCcEE--Ec--C-CCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-C
Q 015201 298 NGG-F---LERMKG-T-GVDVI--GL--D-WTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-R 364 (411)
Q Consensus 298 ~~~-~---l~~~~e-~-g~d~l--~~--d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~ 364 (411)
+.. . ++.-.+ + |-..+ +. + +.-.+.++.+.||-.+.+++-. +.+..+...+++. ..| + .
T Consensus 198 ~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~-------Din~ak~Ln~kL~-~~Gv~~e 269 (389)
T TIGR00381 198 NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVVLSWTIM-------DINMQKTLNRYLL-KRGLMPR 269 (389)
T ss_pred CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeEEEEcCC-------cHHHHHHHHHHHH-HcCCCHH
Confidence 875 2 433333 3 42333 22 3 2235666777888644444322 2344555555555 544 3 5
Q ss_pred CeEEeCCCC-CCCCC--cHHHHHHHHHHHHh
Q 015201 365 GHILNLGHG-VLVGT--PEEAVAHFFEVGKS 392 (411)
Q Consensus 365 gfIls~gc~-i~~~t--p~Eni~a~~~a~~~ 392 (411)
..||-|++. +..+. ..+++.++..++-+
T Consensus 270 DIVlDP~t~alG~Gieya~s~~erIRraALk 300 (389)
T TIGR00381 270 DIVMDPTTCALGYGIEFSITNMERIRLSGLK 300 (389)
T ss_pred HEEEcCCCccccCCHHHHHHHHHHHHHHHhc
Confidence 899999863 33332 34566666666654
|
This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=87.05 E-value=17 Score=35.92 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CC------C-CCCC---------HHHHHHHH--HHHHHHHHHHHHhhCCCCCEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SW------G-GQLP---------PHMWEQWS--EPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~------~-~~iS---------p~~f~ef~--~Py~k~i~~~i~~~~~g~~~~ 292 (411)
+..++.+++..++|||.|-+-- .. . .+.+ -++|+++. +..++++.++.++. |++ +
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~ 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK--GIE-F 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh--CCc-E
Confidence 3445566677889999875431 11 0 1111 13455543 45788999999988 554 2
Q ss_pred EEecCCcccHhHHhcCCCcEEEcCC--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCC-CeE
Q 015201 293 LYINGNGGFLERMKGTGVDVIGLDW--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSR-GHI 367 (411)
Q Consensus 293 ~H~CG~~~~l~~~~e~g~d~l~~d~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~-gfI 367 (411)
+=+.=+...++.+.++|++++-+.. .+++.-+++ +.|..+.+.-|. .|.+||++.+..+.+.+.+. .++
T Consensus 93 ~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm------atl~Ei~~Av~~i~~~G~~~~~i~ 166 (329)
T TIGR03569 93 LSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM------ATLEEIEAAVGVLRDAGTPDSNIT 166 (329)
T ss_pred EEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC------CCHHHHHHHHHHHHHcCCCcCcEE
Confidence 2222333368888899999986643 345444433 245444443222 58999999888876543222 466
Q ss_pred EeCCCCCCCCCcH--HHHHHHHHHHHhcC
Q 015201 368 LNLGHGVLVGTPE--EAVAHFFEVGKSMK 394 (411)
Q Consensus 368 ls~gc~i~~~tp~--Eni~a~~~a~~~yg 394 (411)
|-= |.-...+|+ -|+.++-..-+.|+
T Consensus 167 llh-C~s~YP~~~~~~nL~~I~~Lk~~f~ 194 (329)
T TIGR03569 167 LLH-CTTEYPAPFEDVNLNAMDTLKEAFD 194 (329)
T ss_pred EEE-ECCCCCCCcccCCHHHHHHHHHHhC
Confidence 622 332222333 46666665555565
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=87.02 E-value=24 Score=32.32 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=84.3
Q ss_pred HHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE-c
Q 015201 241 IIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG-L 315 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~-~ 315 (411)
++.++++|||+|-+.-.+ +..++++.=.+.+.|.++.+.+.. .++|+.+-+ -+...++.-.+.|++.++ .
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~----~~~plSIDT-~~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN----PDVPLSIDT-FNPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH----TTSEEEEEE-SSHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC----CCeEEEEEC-CCHHHHHHHHHcCcceEEec
Confidence 888999999999887543 247888876677788777777622 156655433 122245555556999985 3
Q ss_pred CC---CCCHHHHHHHhCCCeeEEccCC-cCccCCC-------HHHHHHHHHHHHHH---hC-C-CCeEEeCCCCCCCCCc
Q 015201 316 DW---TVDMADGRKRLGNDISVQGNVD-PACLFSP-------LPALTDEIQRVVKC---AG-S-RGHILNLGHGVLVGTP 379 (411)
Q Consensus 316 d~---~~di~~~~~~~g~~~~l~G~vd-~~~L~gt-------~eeV~~ev~~~i~~---~~-~-~gfIls~gc~i~~~tp 379 (411)
.. .-.+..+.++++-.+++|=.-. |..+..+ .+++.+..++.++. .| + ...|+-||-+. +..
T Consensus 100 ~~~~~~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf--~~~ 177 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGF--GKD 177 (210)
T ss_dssp TTTSSSTTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTS--STT
T ss_pred ccccccchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCc--CCC
Confidence 22 3357777788887766664331 2222222 23344444433222 34 3 68999999766 444
Q ss_pred HHHHHHHHHHHHhc
Q 015201 380 EEAVAHFFEVGKSM 393 (411)
Q Consensus 380 ~Eni~a~~~a~~~y 393 (411)
.+.-..+++..+.+
T Consensus 178 ~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 178 PEQNLELLRNIEEL 191 (210)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444445544
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=86.92 E-value=11 Score=33.49 Aligned_cols=133 Identities=14% Similarity=0.079 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CCCEEEEecCCc-----c----cHhH
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP--ETPIVLYINGNG-----G----FLER 304 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~--g~~~~~H~CG~~-----~----~l~~ 304 (411)
...+.++.+++.|++++.+.- ++++.+.+..+ .+|++.+..... . ..+.
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHH
Confidence 344556677779999986542 33333332222 367788776554 2 2366
Q ss_pred HhcCCCcEEEcCC----CCC--HH-------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 305 MKGTGVDVIGLDW----TVD--MA-------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 305 ~~e~g~d~l~~d~----~~d--i~-------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
..+.|+|.+.+.. ..+ .+ ++.+..+.++.++-...|... .+++++.+.++.+ ...+--++-.+++
T Consensus 74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~-~~~g~~~iK~~~~ 151 (201)
T cd00945 74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIA-AEAGADFIKTSTG 151 (201)
T ss_pred HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHH-HHhCCCEEEeCCC
Confidence 7788999986421 112 22 233332112333322223222 4677777665544 3332223434443
Q ss_pred CCCCCCCcHHHHHHHHHHHH
Q 015201 372 HGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~ 391 (411)
. .+.+...+.++.+.+...
T Consensus 152 ~-~~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 152 F-GGGGATVEDVKLMKEAVG 170 (201)
T ss_pred C-CCCCCCHHHHHHHHHhcc
Confidence 2 223446778887776553
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.5 Score=44.08 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..++++.+.++|+|.|++.|.. |++.|....+ ++..+++.. ++|+-+|++.+... + ..+ .+.|+
T Consensus 154 e~~~~~ak~l~~~Gad~I~IkDta-G~l~P~~v~~--------lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 154 DNFLELGKKLAEMGCDSIAIKDMA-GLLTPTVTVE--------LYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGC 223 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcc-cCCCHHHHHH--------HHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCC
Confidence 555667778888999999886654 5688877554 445555544 57899999877652 3 333 46899
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
|.+.
T Consensus 224 d~iD 227 (596)
T PRK14042 224 NHID 227 (596)
T ss_pred CEEE
Confidence 9984
|
|
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=86.72 E-value=13 Score=34.60 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~ 314 (411)
+.+..+...|-.++.++..+- +.+.-.-|. ..++++++.. |..+..|. |-.. .++.+++.++|+.+
T Consensus 46 k~~~el~kkGy~g~llSGGm~srg~VPl~kf~--------d~lK~lke~~-~l~inaHv-GfvdE~~~eklk~~~vdvvs 115 (275)
T COG1856 46 KRCMELEKKGYEGCLLSGGMDSRGKVPLWKFK--------DELKALKERT-GLLINAHV-GFVDESDLEKLKEELVDVVS 115 (275)
T ss_pred HHHHHHHhcCceeEEEeCCcCCCCCccHHHHH--------HHHHHHHHhh-CeEEEEEe-eeccHHHHHHHHHhcCcEEE
Confidence 344456677888888876443 345544433 3456677765 56667777 5554 67999999999999
Q ss_pred cCCCCCHHHHHHHhC
Q 015201 315 LDWTVDMADGRKRLG 329 (411)
Q Consensus 315 ~d~~~di~~~~~~~g 329 (411)
+|.--|-..+++.|+
T Consensus 116 LDfvgDn~vIk~vy~ 130 (275)
T COG1856 116 LDFVGDNDVIKRVYK 130 (275)
T ss_pred EeecCChHHHHHHHc
Confidence 887656666666665
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=86.69 E-value=12 Score=33.46 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGL 315 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~ 315 (411)
...+.+++.++.|++.+++-+.. ++.+.+.+ ..+++.+.++++ +.++++|. ..+...+.|+|++|+
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~---~~~~~~~~----~a~~l~~~~~~~--~~~liin~-----~~~la~~~~~dGvHl 78 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD---LSDEELLE----LARRLAELCQKY--GVPLIIND-----RVDLALELGADGVHL 78 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS---S-HHHHHH----HHHHHHHHHHHT--TGCEEEES------HHHHHHCT-SEEEE
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC---CCccHHHH----HHHHHHHHhhcc--eEEEEecC-----CHHHHHhcCCCEEEe
Confidence 34566777889999999886653 34555544 456667777766 67888876 567777899999998
Q ss_pred CC-CCCHHHHHHHhCCCeeE
Q 015201 316 DW-TVDMADGRKRLGNDISV 334 (411)
Q Consensus 316 d~-~~di~~~~~~~g~~~~l 334 (411)
.. ..+..++++.++.+..+
T Consensus 79 ~~~~~~~~~~r~~~~~~~~i 98 (180)
T PF02581_consen 79 GQSDLPPAEARKLLGPDKII 98 (180)
T ss_dssp BTTSSSHHHHHHHHTTTSEE
T ss_pred cccccchHHhhhhcccceEE
Confidence 54 46888888888765543
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=86.65 E-value=6.6 Score=34.90 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCc-c--cHh----HH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNG-G--FLE----RM 305 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~-~--~l~----~~ 305 (411)
++..++.++...++|+|++.+.-++....+.. .+....+++++.+.+ +. +.|+++... +.. . .+. ..
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~--~~~~~~~~~~i~~~~-~~--~~pv~iy~~p~~~~~~~~~~~~~~~~ 138 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGD--WEEVLEEIAAVVEAA-DG--GLPLKVILETRGLKTADEIAKAARIA 138 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCC--HHHHHHHHHHHHHHh-cC--CceEEEEEECCCCCCHHHHHHHHHHH
Confidence 45566777888899999997644432211100 367788888888877 32 678766554 322 1 222 23
Q ss_pred hcCCCcEEEcCCC-----CCHHH---HHHHhCC--CeeEEccCC
Q 015201 306 KGTGVDVIGLDWT-----VDMAD---GRKRLGN--DISVQGNVD 339 (411)
Q Consensus 306 ~e~g~d~l~~d~~-----~di~~---~~~~~g~--~~~l~G~vd 339 (411)
.+.|++++-.... .|+.. +++.+++ ++...|+++
T Consensus 139 ~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 4679999854332 24444 4454442 355566665
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=26 Score=36.44 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEe-----cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---------
Q 015201 234 TQAIADYIIYQVESGAHCIQIF-----DSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------- 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~-----D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------- 299 (411)
++-.++.++++.++|++.|-+. |....|++++-|+. ++.+++..++.++..+.-|..
T Consensus 24 t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~---------l~~l~~~~~~~~l~~l~r~~N~~G~~~~~d 94 (467)
T PRK14041 24 TEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWER---------LKEIRKRLKNTKIQMLLRGQNLVGYRHYAD 94 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHH---------HHHHHHhCCCCEEEEEeccccccCcccccc
Confidence 4455667778888899988552 11123688885543 444444333555555444521
Q ss_pred ---c-cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 300 ---G-FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 300 ---~-~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
. +++...+.|+|.+.+ +...|+..++ +..|. .+.|+++-.. ..-|++.+.+.++++.+.+.. .
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~-- 169 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA--HVQGAISYTVSPVHTLEYYLEFARELVDMGVD-S-- 169 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-E--
Confidence 1 146667889999864 4443433322 33453 4556664332 134678888888877664322 3
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++.. +...-..|+.+..++.++++-
T Consensus 170 I~i~-Dt~G~l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 170 ICIK-DMAGLLTPKRAYELVKALKKK 194 (467)
T ss_pred EEEC-CccCCcCHHHHHHHHHHHHHh
Confidence 3332 233334577788888888763
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=86.55 E-value=20 Score=33.71 Aligned_cols=80 Identities=26% Similarity=0.255 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHH---------HHHHHHHHHHHHhhCCCCCEEEEecCC------
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWS---------EPYIREIVSLVRTKCPETPIVLYINGN------ 298 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~---------~Py~k~i~~~i~~~~~g~~~~~H~CG~------ 298 (411)
+...++++.+.++|+|.+-+.=+... .+.-..-++.. ....-++++.+++.. .+|+++-+=-+
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN-TIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC-CCCEEEEEecCHHHHhC
Confidence 45567788889999999987633332 22222222211 123334555565543 56744322222
Q ss_pred -cccHhHHhcCCCcEEEc
Q 015201 299 -GGFLERMKGTGVDVIGL 315 (411)
Q Consensus 299 -~~~l~~~~e~g~d~l~~ 315 (411)
..+++.+++.|++++.+
T Consensus 93 ~~~fi~~~~~aG~~giii 110 (242)
T cd04724 93 LERFLRDAKEAGVDGLII 110 (242)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 22578889999999876
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.6 Score=40.24 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++++++++.+.++|+|.|.+.|..|- ..|....++ ++.+++..+..++-+|.+.+... + ..+ .+.|+
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G~-a~P~~v~~l--------v~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa 267 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIGV-GTPGTVVPM--------LEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGI 267 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcCC-cCHHHHHHH--------HHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 44556677788899999988777664 778776554 33444433334688899888652 3 444 36799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.++.
T Consensus 268 ~~vd~ 272 (347)
T PLN02746 268 STVDS 272 (347)
T ss_pred CEEEE
Confidence 98853
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.50 E-value=5 Score=38.39 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H-h--HHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L-E--RMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l-~--~~~e~g 309 (411)
+.+.++++.+.++|++.|.+.|+.|. +.|+...++ +..+++..+ ++|+-+|.+.+... + . .-.+.|
T Consensus 138 ~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG 208 (266)
T cd07944 138 EELLELLELVNEIKPDVFYIVDSFGS-MYPEDIKRI--------ISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELG 208 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCC-CCHHHHHHH--------HHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcC
Confidence 34445566777889999988887775 888876654 334444332 37899999988652 2 2 234689
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
++.++.
T Consensus 209 a~~vd~ 214 (266)
T cd07944 209 VEIIDA 214 (266)
T ss_pred CCEEEE
Confidence 988753
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.49 E-value=33 Score=33.36 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++..++..++++|+++.+++. -|+-.+++++...+.|+|++
T Consensus 60 ~~v~~~~v~~~~grvpviaG~g~~------------------------------------~t~eai~lak~a~~~Gad~i 103 (299)
T COG0329 60 KEVLEAVVEAVGGRVPVIAGVGSN------------------------------------STAEAIELAKHAEKLGADGI 103 (299)
T ss_pred HHHHHHHHHHHCCCCcEEEecCCC------------------------------------cHHHHHHHHHHHHhcCCCEE
Confidence 344566677778888888765432 12344577788889999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---c-cHhHHhcC--CCcEEEc-CCCCCHHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---G-FLERMKGT--GVDVIGL-DWTVDMADGR 325 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---~-~l~~~~e~--g~d~l~~-d~~~di~~~~ 325 (411)
.+.-+.-.-.+ .+-..-|++++++.. +.|+++...-.. . ..+.+..+ .-+++.+ |...|+..+.
T Consensus 104 l~v~PyY~k~~----~~gl~~hf~~ia~a~-----~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~ 174 (299)
T COG0329 104 LVVPPYYNKPS----QEGLYAHFKAIAEAV-----DLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLE 174 (299)
T ss_pred EEeCCCCcCCC----hHHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHH
Confidence 87666544344 467778889999888 368888887432 1 23444433 3466666 4555777766
Q ss_pred HH---hCCC-eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHh
Q 015201 326 KR---LGND-ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392 (411)
Q Consensus 326 ~~---~g~~-~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~ 392 (411)
+. .+++ ..+ +.|..+.. ...+. +|..|+|-+++|-. |+-...|++++++
T Consensus 175 ~~~~~~~~~~f~v--------~~G~d~~~----~~~~~-~G~~G~is~~~N~~-----p~~~~~l~~~~~~ 227 (299)
T COG0329 175 EIIAALGDRDFIV--------LSGDDELA----LPALL-LGADGVISVTANVA-----PELAVELYRAAKA 227 (299)
T ss_pred HHHHhcCccCeeE--------EeCchHHH----HHHHh-CCCCeEEecccccC-----HHHHHHHHHHHHc
Confidence 54 5542 222 22433322 22233 45567877766544 3445555555543
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=86.49 E-value=16 Score=36.71 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------HH---HHHHHHHHHHHHHHHhhC-CCCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------WE---QWSEPYIREIVSLVRTKC-PETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f~---ef~~Py~k~i~~~i~~~~-~g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|.+.-.-+ .|+||.. |- |-=.-+..++++.+++.. ++.|+.+-+
T Consensus 139 I~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRi 218 (361)
T cd04747 139 IDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRF 218 (361)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 444445555666777889999998876543 2666632 10 112445667777887764 356777655
Q ss_pred cC-----------Ccc-----cHhHHhcCCCcEEEcCCC-----------CCH-HHHHHHhCCCeeEEccCC
Q 015201 296 NG-----------NGG-----FLERMKGTGVDVIGLDWT-----------VDM-ADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 296 CG-----------~~~-----~l~~~~e~g~d~l~~d~~-----------~di-~~~~~~~g~~~~l~G~vd 339 (411)
.+ ... ++..+.+.|+|.+++... .++ ..+|+..+..+...|++.
T Consensus 219 s~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~ 290 (361)
T cd04747 219 SQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVG 290 (361)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcc
Confidence 43 110 123456789999977321 122 346777776788889884
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=86.40 E-value=35 Score=33.74 Aligned_cols=149 Identities=11% Similarity=0.153 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEec----CC----C------------CCCCHHHHHHH--HHHHHHHHHHHHHhhCCCCCEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFD----SW----G------------GQLPPHMWEQW--SEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D----~~----~------------~~iSp~~f~ef--~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
+...+.++...++|||.|-+-- .. . +.-..++|+++ ...+++++.++.++. |++++
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~~~ 94 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKEL--GLTIF 94 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHh--CCcEE
Confidence 3445566677788999864321 11 0 00123455554 345566899999987 56532
Q ss_pred EEecCCcccHhHHhcCCCcEEEcCC--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 293 LYINGNGGFLERMKGTGVDVIGLDW--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 293 ~H~CG~~~~l~~~~e~g~d~l~~d~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
=..=+...++.+.++|++.+-+.. .+++.-+++ +.|..+.+.-|. .|.+||...+..+.+. |...++|
T Consensus 95 -stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~------~t~~Ei~~Av~~i~~~-g~~~i~L 166 (327)
T TIGR03586 95 -SSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI------ATLEEIQEAVEACREA-GCKDLVL 166 (327)
T ss_pred -EccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC------CCHHHHHHHHHHHHHC-CCCcEEE
Confidence 222222357888899999997643 234443333 234333332221 5899998888877643 3445666
Q ss_pred eCCCCCCCCCcHH--HHHHHHHHHHhcC
Q 015201 369 NLGHGVLVGTPEE--AVAHFFEVGKSMK 394 (411)
Q Consensus 369 s~gc~i~~~tp~E--ni~a~~~a~~~yg 394 (411)
.= |.-...+|++ |+.+|-..-+.|+
T Consensus 167 lh-C~s~YP~~~~~~nL~~i~~lk~~f~ 193 (327)
T TIGR03586 167 LK-CTSSYPAPLEDANLRTIPDLAERFN 193 (327)
T ss_pred Ee-cCCCCCCCcccCCHHHHHHHHHHhC
Confidence 43 4333334554 5666655555565
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=86.38 E-value=26 Score=33.33 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC--CcHHHHHHHHHHHHhcC
Q 015201 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVG--TPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 346 t~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~--tp~Eni~a~~~a~~~yg 394 (411)
+||-| +++++..++-|.=+++|=...+| -+++.|++|++.+++..
T Consensus 209 ~peNV----~~ai~~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~~~ 255 (256)
T PLN02363 209 TPENV----HEAVSLLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKSVA 255 (256)
T ss_pred CHHHH----HHHHHhcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHhhc
Confidence 55544 44455666667778888887777 48899999999988653
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=3.8 Score=43.84 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g 309 (411)
.++..+.++.+.++|+|.|++.|..|. +.|....+ +++.+++.. ++|+-+|++.+... + ..+ .+.|
T Consensus 154 ~~~~~~~a~~l~~~Gad~i~i~Dt~G~-l~P~~~~~--------lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 154 LQTWVDLAKQLEDMGVDSLCIKDMAGL-LKPYAAYE--------LVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC-cCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcC
Confidence 355666777788899999988776665 77876544 344555543 57899999887652 3 333 3679
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 224 a~~vD 228 (593)
T PRK14040 224 IDGVD 228 (593)
T ss_pred CCEEE
Confidence 99985
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=86.17 E-value=28 Score=33.22 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc---c----cHhHHhcCC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG---G----FLERMKGTG 309 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~---~----~l~~~~e~g 309 (411)
.++.++...++|+|++.+.-+.-.-.|+ +-+.-|++++.+.. ++|++++..... . .+..+.+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~----~~~~~~~~~ia~~~-----~~pi~iYn~P~~tg~~l~~~~~~~L~~~- 150 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQ----EGIVAHFKAVADAS-----DLPVILYNIPGRTGVDLSPETIARLAEH- 150 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEECccccCCCCCHHHHHHHhcC-
Confidence 4566667788899999876654433454 44566777777763 578888876532 1 23444443
Q ss_pred CcEEEc-CCCCCHHH---HHHHhCCCeeEEccCCcC
Q 015201 310 VDVIGL-DWTVDMAD---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 310 ~d~l~~-d~~~di~~---~~~~~g~~~~l~G~vd~~ 341 (411)
-++..+ +...|+.. +.+..++++.++.|-|..
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~ 186 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDL 186 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchHH
Confidence 244444 33335544 445455566666555653
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=86.05 E-value=7.5 Score=36.68 Aligned_cols=143 Identities=9% Similarity=0.116 Sum_probs=69.2
Q ss_pred HHHHHHhCCCEEEEe--cC--C-------CCCCCH---------HHHHHHHH--HHHHHHHHHHHhhCCCCCEEEEecCC
Q 015201 241 IIYQVESGAHCIQIF--DS--W-------GGQLPP---------HMWEQWSE--PYIREIVSLVRTKCPETPIVLYINGN 298 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~--D~--~-------~~~iSp---------~~f~ef~~--Py~k~i~~~i~~~~~g~~~~~H~CG~ 298 (411)
++...++|||.|-+- +. . ..+.++ ++|+++.+ ..+++|.+.+++. |+ .+.+.-.
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--gi--~f~stpf 77 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKEL--GI--DFFSTPF 77 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHT--T---EEEEEE-
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHc--CC--EEEECCC
Confidence 567788999997543 21 0 012222 45665544 4577999999998 54 2323222
Q ss_pred -cccHhHHhcCCCcEEEcC--CCCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE-eCCC
Q 015201 299 -GGFLERMKGTGVDVIGLD--WTVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL-NLGH 372 (411)
Q Consensus 299 -~~~l~~~~e~g~d~l~~d--~~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl-s~gc 372 (411)
..-++.+.++|++.+=+. ..+++.-+++. .|..+.+.-| ..|.+||++.++-+-+. +...++| -.--
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG------~stl~EI~~Av~~~~~~-~~~~l~llHC~s 150 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG------MSTLEEIERAVEVLREA-GNEDLVLLHCVS 150 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T------T--HHHHHHHHHHHHHH-CT--EEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC------CCCHHHHHHHHHHHHhc-CCCCEEEEecCC
Confidence 235788888899998542 23455444433 4443333221 25789998877666444 4434444 3222
Q ss_pred CCCCCCcHHHHHHHHHHHHhcC
Q 015201 373 GVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~yg 394 (411)
..|..-..-|++.|-..-+.|+
T Consensus 151 ~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 151 SYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp SSS--GGG--TTHHHHHHHHST
T ss_pred CCCCChHHcChHHHHHHHHhcC
Confidence 3342222346666666666676
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=85.53 E-value=13 Score=43.12 Aligned_cols=71 Identities=27% Similarity=0.399 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~ 310 (411)
++..++++.+.++|+|.|.+.|. +|++.|....+ ++..+++.. ++|+-+|++.+... + ..+ .+.|+
T Consensus 691 ~~~~~~a~~l~~~Ga~~i~ikDt-~G~l~P~~~~~--------lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGa 760 (1146)
T PRK12999 691 DYYVDLAKELEKAGAHILAIKDM-AGLLKPAAAYE--------LVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGV 760 (1146)
T ss_pred HHHHHHHHHHHHcCCCEEEECCc-cCCCCHHHHHH--------HHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCC
Confidence 55567778888899999877665 45688876544 455666654 67899999877652 3 333 36899
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
|.++.
T Consensus 761 d~vD~ 765 (1146)
T PRK12999 761 DIVDV 765 (1146)
T ss_pred CEEEe
Confidence 99854
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.52 E-value=15 Score=35.13 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHHH----HHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWSE----PYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~~----Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++++.+.|||.+-++ ||.+. .|-...-+-+-. ...-++++.+++. ..+|+++-..-|.
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G 107 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYYNPVLHYG 107 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhC
Confidence 445566778899999998755 56553 333332222111 1222344455543 3678777777663
Q ss_pred -c-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCCCCeEEeCC-CCC
Q 015201 300 -G-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGSRGHILNLG-HGV 374 (411)
Q Consensus 300 -~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~~gfIls~g-c~i 374 (411)
. +++.+++.|+|++.+..- .+.+..+.+. .+---|+++..| . .|+++ ..+++.+.. .|||.-.+ -++
T Consensus 108 ~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~--~~~~~gi~~I~lv~PtT~~e---ri~~i~~~a--~gFIY~vS~~Gv 179 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDL-PYEESDYLIS--VCNLYNIELILLIAPTSSKS---RIQKIARAA--PGCIYLVSTTGV 179 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCC-CHHHHHHHHH--HHHHcCCCEEEEECCCCCHH---HHHHHHHhC--CCcEEEEcCCCC
Confidence 1 467788899999875321 2233322211 111123455443 2 55543 333444433 36766522 222
Q ss_pred CC--CCcHHHHHHHHHHHHhcCCCCC
Q 015201 375 LV--GTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 375 ~~--~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
.. ..-+++++.+++.+|++...++
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~t~~Pi 205 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKMTNKPI 205 (263)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCCE
Confidence 21 2335789999999998755444
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=85.40 E-value=24 Score=37.83 Aligned_cols=142 Identities=19% Similarity=0.344 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-----c-
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-----G- 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-----~- 299 (411)
++-.+..++.+.++|.+.|-+ |++ +++++-|+. ++ .+++..++.++..+.-|. .
T Consensus 25 t~d~l~ia~~l~~~G~~~iE~---~ggatfd~~~rfl~edp~e~-----l~----~l~~~~~~~~l~~l~Rg~N~~gy~~ 92 (592)
T PRK09282 25 TEDMLPIAEKLDKVGFWSLEV---WGGATFDVCIRYLNEDPWER-----LR----KLKKALPNTPLQMLLRGQNLVGYRH 92 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEe---cCCccchhhcccCCccHHHH-----HH----HHHHhCCCCEEEEEecccccccccc
Confidence 344556777888889888755 432 678877664 33 333333355665554441 1
Q ss_pred -----c--cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCC
Q 015201 300 -----G--FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 300 -----~--~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~ 364 (411)
. +++...+.|+|++.+ +...|+..++ +..|. .+.+++.-.. -.-|++.+.+.++++.+. |..
T Consensus 93 ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad 169 (592)
T PRK09282 93 YPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGA--HVQGTISYTTSPVHTIEKYVELAKELEEM-GCD 169 (592)
T ss_pred ccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCC
Confidence 1 256667789999964 4444433322 33453 3456553321 135788888888888664 322
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+.| |+......|+.+..+++++++-
T Consensus 170 ~I~i---~Dt~G~~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 170 SICI---KDMAGLLTPYAAYELVKALKEE 195 (592)
T ss_pred EEEE---CCcCCCcCHHHHHHHHHHHHHh
Confidence 3333 4445556788899999888764
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.20 E-value=5.9 Score=37.61 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~ 310 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++..+ +++-+|.+-+... + . .-.+.|+
T Consensus 139 ~~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~ 208 (259)
T cd07939 139 DFLIEFAEVAQEAGADRLRFADTVGI-LDPFTTYEL--------IRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGA 208 (259)
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCC
Confidence 34445556667789999988887775 778776553 444544443 6889999987652 2 2 2336799
Q ss_pred cEEEc
Q 015201 311 DVIGL 315 (411)
Q Consensus 311 d~l~~ 315 (411)
+.+..
T Consensus 209 ~~vd~ 213 (259)
T cd07939 209 THVSV 213 (259)
T ss_pred CEEEE
Confidence 98743
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=84.96 E-value=6.2 Score=37.94 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~d 311 (411)
++.+.++...++|+|.|.+.|+.|. +.|+...+ +++.++++. ++++-+|.+-+... + . .-.+.|++
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~--------lv~~l~~~~-~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGL-LTPYAAYE--------LVKALKKEV-GLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCC-CCHHHHHH--------HHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 3445555677889999988877765 77876544 345555544 36889999887652 2 2 23367999
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
.++.
T Consensus 220 ~vd~ 223 (275)
T cd07937 220 IVDT 223 (275)
T ss_pred EEEE
Confidence 8853
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=84.88 E-value=29 Score=31.11 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
.+.++..++.|++.+++-+.. .+... .....+++.+.++++ +.++++|. .++...+.|.+++++..
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~---~~~~~----~~~~~~~l~~~~~~~--~~~l~i~~-----~~~la~~~g~~GvHl~~ 81 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKG---SNTRE----RLALAEKLQELCRRY--GVPFIVND-----RVDLALALGADGVHLGQ 81 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCC---CCHHH----HHHHHHHHHHHHHHh--CCeEEEEC-----HHHHHHHcCCCEEecCc
Confidence 355667888999998775432 23333 344556666677665 57788865 46667788999988743
Q ss_pred -CCCHHHHHHHhC
Q 015201 318 -TVDMADGRKRLG 329 (411)
Q Consensus 318 -~~di~~~~~~~g 329 (411)
..+...+++.++
T Consensus 82 ~~~~~~~~r~~~~ 94 (196)
T TIGR00693 82 DDLPASEARALLG 94 (196)
T ss_pred ccCCHHHHHHhcC
Confidence 345555555443
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.86 E-value=37 Score=32.39 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-------c-HhHH------
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-------F-LERM------ 305 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-------~-l~~~------ 305 (411)
..+..+..|+|++.+.=-+++--+.+|.+++ -++.+..+++ |.|++.+.=..-. . -+.+
T Consensus 102 ~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~-----~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRl 174 (265)
T COG1830 102 TVEDAIRLGADAVGATVYVGSETEREMIENI-----SQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARL 174 (265)
T ss_pred eHHHHHhCCCcEEEEEEecCCcchHHHHHHH-----HHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHH
Confidence 3455668899999887778876667776664 5788889988 7898876543211 1 1222
Q ss_pred -hcCCCcEEEcCCCC---CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC-CCCcH
Q 015201 306 -KGTGVDVIGLDWTV---DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL-VGTPE 380 (411)
Q Consensus 306 -~e~g~d~l~~d~~~---di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-~~tp~ 380 (411)
.++|.|++-..+.- ...++-+-.+-.+.+.||=.. ++++++.+.++..|+.++. | +..|-++- .+-|.
T Consensus 175 aaelGADIiK~~ytg~~e~F~~vv~~~~vpVviaGG~k~----~~~~~~l~~~~~ai~aGa~-G--~~~GRNifQ~~~p~ 247 (265)
T COG1830 175 AAELGADIIKTKYTGDPESFRRVVAACGVPVVIAGGPKT----ETEREFLEMVTAAIEAGAM-G--VAVGRNIFQHEDPE 247 (265)
T ss_pred HHHhcCCeEeecCCCChHHHHHHHHhCCCCEEEeCCCCC----CChHHHHHHHHHHHHccCc-c--hhhhhhhhccCChH
Confidence 37899999766544 345555555655666665433 5888999999999998543 3 33455553 33443
Q ss_pred HHHHHHHHHHH
Q 015201 381 EAVAHFFEVGK 391 (411)
Q Consensus 381 Eni~a~~~a~~ 391 (411)
.=++|+...++
T Consensus 248 ~m~~Ai~~Ivh 258 (265)
T COG1830 248 AMVKAIQAIVH 258 (265)
T ss_pred HHHHHHHHHhc
Confidence 33344444333
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=84.70 E-value=37 Score=34.26 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=76.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
++.++...+.|+..+++...+.+...++. .++++.++++.+++. +.. +.-+.|... .+..+++.|+|.++.
T Consensus 122 l~~a~~~~~~G~~~~~ivts~rg~~~e~~----~~e~i~eiir~ik~~--~l~-i~~s~G~l~~E~l~~LkeAGld~~~~ 194 (379)
T PLN02389 122 LEAAKRAKEAGSTRFCMGAAWRDTVGRKT----NFNQILEYVKEIRGM--GME-VCCTLGMLEKEQAAQLKEAGLTAYNH 194 (379)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCCChh----HHHHHHHHHHHHhcC--CcE-EEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 33455556779999888766655455433 247778888888865 332 223346554 478899999999876
Q ss_pred CCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 316 DWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS--RGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 316 d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~--~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.-.. ..+.|.. ++ + ..+.++..+.++.+.+.+-. .|+|++.| . ..|.+..++...+++
T Consensus 195 ~LeT----s~~~y~~-i~------~---~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlg-----E-t~edrv~~l~~Lr~L 254 (379)
T PLN02389 195 NLDT----SREYYPN-VI------T---TRSYDDRLETLEAVREAGISVCSGGIIGLG-----E-AEEDRVGLLHTLATL 254 (379)
T ss_pred eecC----ChHHhCC-cC------C---CCCHHHHHHHHHHHHHcCCeEeEEEEECCC-----C-CHHHHHHHHHHHHhc
Confidence 3222 1233432 22 1 13677777776666665433 46777543 2 345555566677776
Q ss_pred C
Q 015201 394 K 394 (411)
Q Consensus 394 g 394 (411)
.
T Consensus 255 ~ 255 (379)
T PLN02389 255 P 255 (379)
T ss_pred c
Confidence 3
|
|
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.57 E-value=41 Score=32.66 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHH--HHHHHHHHHHHHHHHHhhCC--C--CCEEEE-ecCCcc-------
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWG-GQLPPHMW--EQWSEPYIREIVSLVRTKCP--E--TPIVLY-INGNGG------- 300 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f--~ef~~Py~k~i~~~i~~~~~--g--~~~~~H-~CG~~~------- 300 (411)
.+.+.-++++|+|||.|.. +.++ +.++-+.| +.-++.-.++-++..++... + .|.++- +=|-+.
T Consensus 54 ~I~~IH~aY~eAGADiIeT-NTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~ 132 (311)
T COG0646 54 VIEAIHRAYIEAGADIIET-NTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISP 132 (311)
T ss_pred HHHHHHHHHHhccCcEEEe-cCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCC
Confidence 3445567899999998843 4444 45665554 34555555544433332210 1 233222 222211
Q ss_pred ---------------cHhHHhcCCCcEEEcCCCCCHHHHHHHh----------CCC--eeEEccCCcCc--cCC-CHHHH
Q 015201 301 ---------------FLERMKGTGVDVIGLDWTVDMADGRKRL----------GND--ISVQGNVDPAC--LFS-PLPAL 350 (411)
Q Consensus 301 ---------------~l~~~~e~g~d~l~~d~~~di~~~~~~~----------g~~--~~l~G~vd~~~--L~g-t~eeV 350 (411)
-++-+++-|+|++-++...|+.++|..+ |.+ +.+.|-++..- |.| ++++.
T Consensus 133 ~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~ 212 (311)
T COG0646 133 DFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAF 212 (311)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHH
Confidence 0223456799999888777776654332 333 45567777752 444 45544
Q ss_pred HHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCCCCC
Q 015201 351 TDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSS 399 (411)
Q Consensus 351 ~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~ 399 (411)
-.. ++.. +-++++..|.+.| +.++..++...++....++
T Consensus 213 ~~~----l~~~--~~~~vGlNCa~Gp----~~m~~~l~~ls~~~~~~vs 251 (311)
T COG0646 213 LNS----LEHL--GPDAVGLNCALGP----DEMRPHLRELSRIADAFVS 251 (311)
T ss_pred HHH----hhcc--CCcEEeeccccCH----HHHHHHHHHHHhccCceEE
Confidence 332 3333 4788999999885 4555555555554433333
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.37 E-value=28 Score=33.04 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHH----HHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWS----EPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~----~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++++.++|+|.|-++ ||.+. .|-...-+-+- ....-++++.+++...++|+++-.--|.
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G 103 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKG 103 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhh
Confidence 445567778889999998755 55553 33332222111 1223344555654322678663333443
Q ss_pred -c-cHhHHhcCCCcEEEc
Q 015201 300 -G-FLERMKGTGVDVIGL 315 (411)
Q Consensus 300 -~-~l~~~~e~g~d~l~~ 315 (411)
. +++.+++.|++++-+
T Consensus 104 ~e~f~~~~~~aGvdgvii 121 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLV 121 (256)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 2 567888999999865
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=83.90 E-value=24 Score=33.47 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHHH----HHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQWS----EPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef~----~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...+.++.+.++|+|.+-++ ||.+. .|-...-+-+- ..-.-++++.+++. ..+|+++-..-|.
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecccHHHHhH
Confidence 455677888999999998755 56553 33322222111 01122333444433 2678777777663
Q ss_pred --ccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHhCCCCeEEeCC-CCC
Q 015201 300 --GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCAGSRGHILNLG-HGV 374 (411)
Q Consensus 300 --~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~~~~gfIls~g-c~i 374 (411)
.+++..++.|+|++-+-. ..+++..+... .+--=|+++..|. .|+++ .++++.+.. .|||--.+ .++
T Consensus 95 ~~~F~~~~~~aGv~GviipD-LP~ee~~~~~~--~~~~~gl~~I~lv~Ptt~~~---ri~~ia~~~--~gFIY~Vs~~Gv 166 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPD-LPLEETEALRA--EAAKNGIELVLLTTPTTPTE---RMKAIAEAS--EGFVYLVSSTGV 166 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCC-CCHHHHHHHHH--HHHHcCCeEEEEeCCCCCHH---HHHHHHHhC--CCcEEEeeCCCC
Confidence 246778889999986522 23333322211 1111234444332 34332 222333322 35555322 233
Q ss_pred CC--CCcHHHHHHHHHHHHhcCCCC
Q 015201 375 LV--GTPEEAVAHFFEVGKSMKYDN 397 (411)
Q Consensus 375 ~~--~tp~Eni~a~~~a~~~yg~~~ 397 (411)
.. ..-++++..+++.+|++..-+
T Consensus 167 TG~~~~~~~~~~~~i~~vk~~~~~P 191 (250)
T PLN02591 167 TGARASVSGRVESLLQELKEVTDKP 191 (250)
T ss_pred cCCCcCCchhHHHHHHHHHhcCCCc
Confidence 21 122567888888888864433
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=83.86 E-value=17 Score=35.72 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 245 VESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+.|+..|.+.. | .++.++ +.++++.+++..+...+.+.+.|... .++.+.+.|++.+++
T Consensus 62 ~~~gi~~I~~tG--GEPll~~~---------l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~I 124 (331)
T PRK00164 62 VALGVRKVRLTG--GEPLLRKD---------LEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNV 124 (331)
T ss_pred HHCCCCEEEEEC--CCCcCccC---------HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEE
Confidence 345888887743 2 255543 34556666665323456677777642 467788899987643
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=83.62 E-value=34 Score=30.94 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=61.1
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLDW 317 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d~ 317 (411)
++.+.++|+|.|.+.--. ++ ...+++++.++++ |.++++=.++..+ .+....+.|+|.+.+..
T Consensus 69 ~~~~~~~Gad~i~vh~~~----~~--------~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA----DD--------ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHcCCCEEEEeccC----CH--------HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 667789999998654221 11 2456788889887 6777654344332 34556778999987643
Q ss_pred C--------CC---HHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 318 T--------VD---MADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 318 ~--------~d---i~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
. .. +.++++.++. .+.+.||+++ +. ++++++. |-.++++++.
T Consensus 135 g~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~-------~n----~~~~~~~-Ga~~v~vGsa 188 (206)
T TIGR03128 135 GLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINL-------DT----IPDVIKL-GPDIVIVGGA 188 (206)
T ss_pred CcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCH-------HH----HHHHHHc-CCCEEEEeeh
Confidence 2 12 3555555543 3444688843 22 3344543 3346666554
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=83.57 E-value=23 Score=34.18 Aligned_cols=74 Identities=8% Similarity=0.130 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPE-TPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g-~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
+...+++..+.+.+.|....... .+++. | +.+.++.+.+.+.. . +|+.+|.|-... .+....+.|++.
T Consensus 29 ~~avi~aAe~~~~PvIl~~~~~~~~~~~~--~-~~~~~~~~~~a~~~-----~~vpv~lhlDH~~~~e~i~~ai~~Gf~s 100 (282)
T TIGR01859 29 TQAILEAAEEENSPVIIQVSEGAIKYMGG--Y-KMAVAMVKTLIERM-----SIVPVALHLDHGSSYESCIKAIKAGFSS 100 (282)
T ss_pred HHHHHHHHHHhCCCEEEEcCcchhhccCc--H-HHHHHHHHHHHHHC-----CCCeEEEECCCCCCHHHHHHHHHcCCCE
Confidence 33445566677888875432211 12221 1 22345555554443 4 799999874332 567777889999
Q ss_pred EEcCCC
Q 015201 313 IGLDWT 318 (411)
Q Consensus 313 l~~d~~ 318 (411)
+.+|..
T Consensus 101 Vmid~s 106 (282)
T TIGR01859 101 VMIDGS 106 (282)
T ss_pred EEECCC
Confidence 988753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=83.48 E-value=36 Score=36.43 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEec-----CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------
Q 015201 233 LTQAIADYIIYQVESGAHCIQIFD-----SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-------- 299 (411)
Q Consensus 233 ~~d~~~~~~~~~~e~G~d~i~i~D-----~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-------- 299 (411)
-++-.+++++.+.++|.+.|-+.. ..-.+++++-|+. ++.+++..++.++..+.-|..
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~---------l~~l~~~~~~~~l~~L~Rg~N~~G~~~yp 89 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWER---------LRELKKALPNTPLQMLLRGQNLLGYRHYA 89 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHH---------HHHHHHhCCCCEEEEEEccccccccccCc
Confidence 345566778888899999875531 1124788885543 344444334666766655521
Q ss_pred ----c-cHhHHhcCCCcEEEc-CCCCCHHHHH------HHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 300 ----G-FLERMKGTGVDVIGL-DWTVDMADGR------KRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 300 ----~-~l~~~~e~g~d~l~~-d~~~di~~~~------~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
. +++...+.|+|.+.+ +...|...++ +..|. .+.+++.-.. -.-|++.+.+.++++.+.+. ..+
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~--~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Ga-d~I 166 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGA--HAQGTISYTTSPVHTLETYLDLAEELLEMGV-DSI 166 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 1 246667889999864 4443433322 33453 3444443221 13578888888888776532 233
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+ |+......|+.+..++.++++.
T Consensus 167 ~i---~Dt~G~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 167 CI---KDMAGILTPKAAYELVSALKKR 190 (582)
T ss_pred EE---CCCCCCcCHHHHHHHHHHHHHh
Confidence 33 3444455677788888888764
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=83.33 E-value=8.5 Score=37.28 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDV 312 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~ 312 (411)
+-.++.++++.++|||++++. +..-++++.+++ ++.++...|.+|+++.. +... .++.+.++|++.
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~--------~~~~~~~~p~~pl~~~~-~~~~~~~~~eL~~lG~~~ 236 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIH---SRKKDPDEILEF--------ARRFRNHYPRTPLVIVP-TSYYTTPTDEFRDAGISV 236 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHH--------HHHhhhhCCCCCEEEec-CCCCCCCHHHHHHcCCCE
Confidence 445667889999999999874 234667665553 44444433456765433 4322 478999999999
Q ss_pred EEcC
Q 015201 313 IGLD 316 (411)
Q Consensus 313 l~~d 316 (411)
+++.
T Consensus 237 v~~~ 240 (285)
T TIGR02320 237 VIYA 240 (285)
T ss_pred EEEh
Confidence 8774
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=56 Score=34.29 Aligned_cols=139 Identities=17% Similarity=0.328 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc------
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGG--------QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG------ 299 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~--------~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~------ 299 (411)
++-.+..++++-++|.+.|-+ ||| +++.+-|++ ++.+++..++.++....-|..
T Consensus 26 t~d~l~ia~~ld~~G~~siE~---~GGatfd~~~rfl~Edpwer---------lr~lr~~~~nt~lqmL~Rg~N~vGy~~ 93 (499)
T PRK12330 26 MEDMVGACEDIDNAGYWSVEC---WGGATFDACIRFLNEDPWER---------LRTFRKLMPNSRLQMLLRGQNLLGYRH 93 (499)
T ss_pred HHHHHHHHHHHHhcCCCEEEe---cCCcchhhhhcccCCCHHHH---------HHHHHHhCCCCeEEEEEcccccCCccC
Confidence 344455666777788887644 543 577777765 445554445667777776651
Q ss_pred -----c--cHhHHhcCCCcEEEc-CCCCCHHHH------HHHhCCCeeEEccC----CcCccCCCHHHHHHHHHHHHHHh
Q 015201 300 -----G--FLERMKGTGVDVIGL-DWTVDMADG------RKRLGNDISVQGNV----DPACLFSPLPALTDEIQRVVKCA 361 (411)
Q Consensus 300 -----~--~l~~~~e~g~d~l~~-d~~~di~~~------~~~~g~~~~l~G~v----d~~~L~gt~eeV~~ev~~~i~~~ 361 (411)
. +++...+.|+|++.+ +...|+... .++.|.. ..|.| +| .-|+|.+.+.++++.+.+
T Consensus 94 y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~--~~~~i~yt~sp---~~t~e~~~~~a~~l~~~G 168 (499)
T PRK12330 94 YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKH--AQGTICYTVSP---IHTVEGFVEQAKRLLDMG 168 (499)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCe--EEEEEEEecCC---CCCHHHHHHHHHHHHHcC
Confidence 1 244556789999964 555554332 2334542 22322 33 248888888888887754
Q ss_pred CCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 362 GSRGHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 362 ~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
. -+++.... ..-..|+.+..++.+.++.
T Consensus 169 a---d~I~IkDt-aGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 169 A---DSICIKDM-AALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred C---CEEEeCCC-ccCCCHHHHHHHHHHHHHh
Confidence 2 23443333 2334567788888888764
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=82.89 E-value=33 Score=33.52 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------H---HHHHHHHHHHHHHHHHhhC-CCCCEEEEe
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------W---EQWSEPYIREIVSLVRTKC-PETPIVLYI 295 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f---~ef~~Py~k~i~~~i~~~~-~g~~~~~H~ 295 (411)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||.. | -+-=..+..++++.+++.. ++.++.+-.
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vri 215 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRL 215 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 444455555667788899999998764322 2666631 1 0111234456666666653 355676644
Q ss_pred cCC------c---c---cHhHHhcCCCcEEEcC
Q 015201 296 NGN------G---G---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 296 CG~------~---~---~l~~~~e~g~d~l~~d 316 (411)
... . . +++.+.+.|+|.+++.
T Consensus 216 s~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs 248 (327)
T cd02803 216 SADDFVPGGLTLEEAIEIAKALEEAGVDALHVS 248 (327)
T ss_pred chhccCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 422 1 1 2466778899999753
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=82.81 E-value=28 Score=33.63 Aligned_cols=91 Identities=16% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHhc-CCCcE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMKG-TGVDV 312 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~e-~g~d~ 312 (411)
++.++...++|+|++.+.-+.-.-.|+ +=+.-|++.+.+.. ++|++++.+.... .+..+.+ .+ ++
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~----~~i~~~f~~v~~~~-----~~pi~lYn~~g~~l~~~~l~~L~~~~p-ni 153 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQ----EGLYAHVEAVCKST-----DLGVIVYNRANAVLTADSLARLAERCP-NL 153 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCH----HHHHHHHHHHHhcC-----CCCEEEEeCCCCCCCHHHHHHHHhcCC-CE
Confidence 456677788999999876665433454 44555778887754 4688776653322 2444554 43 55
Q ss_pred EEc-CCCCCHHH---HHHHhCCCeeEEccC
Q 015201 313 IGL-DWTVDMAD---GRKRLGNDISVQGNV 338 (411)
Q Consensus 313 l~~-d~~~di~~---~~~~~g~~~~l~G~v 338 (411)
..+ +...|+.. +.+..+++..++.|.
T Consensus 154 vgiKds~~d~~~~~~~~~~~~~~~~v~~G~ 183 (289)
T cd00951 154 VGFKDGVGDIELMRRIVAKLGDRLLYLGGL 183 (289)
T ss_pred EEEEeCCCCHHHHHHHHHhcCCCeEEEeCC
Confidence 554 33445555 445556666666554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=26 Score=33.40 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHH----HHHHHHHHHHHHHhhCCCCCEEEEecCCc-----
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQW----SEPYIREIVSLVRTKCPETPIVLYINGNG----- 299 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef----~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----- 299 (411)
+...++++.+.+.|||.|-++ ||.+. .|-....+-+ -..-.-++++.+++...++|+++-..-|.
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G 105 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYG 105 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcC
Confidence 445567778889999998765 55542 3322222211 11122233444553334678777776653
Q ss_pred --ccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHhCCCCeEEe--CCCC
Q 015201 300 --GFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCAGSRGHILN--LGHG 373 (411)
Q Consensus 300 --~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~~~~gfIls--~gc~ 373 (411)
.+++..++.|+|++.+- ...+.+..+... .+--=|+++..| . .|+++ .++++.+. ..|||-- .-..
T Consensus 106 ~e~f~~~~~~aGvdGviip-DLp~ee~~~~~~--~~~~~gl~~I~lvap~t~~e---ri~~i~~~--s~gfIY~vs~~Gv 177 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIP-DLPPEEAEELRA--AAKKHGLDLIFLVAPTTTDE---RLKKIASH--ASGFVYYVSRAGV 177 (258)
T ss_pred HHHHHHHHHHcCCcEEEEC-CCCHHHHHHHHH--HHHHcCCcEEEEeCCCCCHH---HHHHHHHh--CCCcEEEEeCCCC
Confidence 24688889999998762 233444433221 011122444332 1 34432 22222222 2467743 2111
Q ss_pred CC-CCCcHHHHHHHHHHHHhcCCCC
Q 015201 374 VL-VGTPEEAVAHFFEVGKSMKYDN 397 (411)
Q Consensus 374 i~-~~tp~Eni~a~~~a~~~yg~~~ 397 (411)
.. ....++++..+++.+|++..-+
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~~~~p 202 (258)
T PRK13111 178 TGARSADAADLAELVARLKAHTDLP 202 (258)
T ss_pred CCcccCCCccHHHHHHHHHhcCCCc
Confidence 11 1123466888888888875433
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=22 Score=35.65 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH------HH---HHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM------WE---QWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~------f~---ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.+.+-..+.++...++|.|+|.+.-.-+ .|+||.. |= |-=.-+..++++.+++..|.-.+.+.+.
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis 233 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRIS 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 444555555567778899999999876544 3777741 10 1113445566666666543324555553
Q ss_pred CC----------c----c--cHhHHhcCCCcEEEcC
Q 015201 297 GN----------G----G--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 297 G~----------~----~--~l~~~~e~g~d~l~~d 316 (411)
+. . . ++..+.+.|+|.+++.
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 21 1 0 1244556799999874
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=82.11 E-value=6.8 Score=34.83 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=40.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLD 316 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d 316 (411)
++..+++|+|+|.+ |. +||++ ++++++.+++..+. +.+-.+|.++ .++.+.++|+|++++.
T Consensus 93 ~~ea~~~g~d~I~l-D~----~~~~~--------~~~~v~~l~~~~~~--v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 93 AEEALEAGADIIML-DN----MSPED--------LKEAVEELRELNPR--VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHTT-SEEEE-ES-----CHHH--------HHHHHHHHHHHTTT--SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHhCCCEEEe-cC----cCHHH--------HHHHHHHHhhcCCc--EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 33455689999844 44 36755 45566666666433 5667788876 5999999999999874
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=81.89 E-value=31 Score=32.98 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCC--c-c-cHhHHhcCCCc-----EEEcCCCCCHHHHHHHh--CCCeeEEccCCc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYINGN--G-G-FLERMKGTGVD-----VIGLDWTVDMADGRKRL--GNDISVQGNVDP 340 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~CG~--~-~-~l~~~~e~g~d-----~l~~d~~~di~~~~~~~--g~~~~l~G~vd~ 340 (411)
...+++.++..++. |.|+++|+... . . .++.+.+.|+. +.|.....|...+++.. |-.+.+-|.. .
T Consensus 135 ~~~f~~~~~lA~~~--~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~-~ 211 (293)
T cd00530 135 EKVLRAAARAQKET--GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIG-K 211 (293)
T ss_pred HHHHHHHHHHHHHH--CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCC-c
Confidence 35566777777776 79999998752 2 2 46888887764 23555334666666654 3222222211 1
Q ss_pred Cc-c-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 341 AC-L-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 341 ~~-L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
.. - .-+.++..+.++++++......++++++..-
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~ 247 (293)
T cd00530 212 DKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFR 247 (293)
T ss_pred ccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCc
Confidence 10 0 1123456667888888765578899998754
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III | Back alignment and domain information |
|---|
Probab=81.79 E-value=59 Score=33.26 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|...-....+.++. +.+++.++...++|
T Consensus 182 v~~~~~a~~~a~~eTG~~~~y~~NiT~~~-------------------------------------~em~~ra~~a~e~G 224 (412)
T cd08213 182 AKESLKARDKAEAETGERKAYLANITAPV-------------------------------------REMERRAELVADLG 224 (412)
T ss_pred HHHHHHHHHHHHHhhCCcceEEEEecCCH-------------------------------------HHHHHHHHHHHHhC
Confidence 67778888888888876554444444431 11223345567789
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc----------c-c-H-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG----------G-F-L-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~----------~-~-l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.|+ |. +..+.+...+. +.|+..|-.+.- . . + ..+.=.|+|.+++
T Consensus 225 ~~~~mv~~~~~G~-~~----------l~~l~~~~~~~--~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~ 291 (412)
T cd08213 225 GKYVMIDVVVAGW-SA----------LQYLRDLAEDY--GLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVDQLHI 291 (412)
T ss_pred CCeEEeeccccCh-HH----------HHHHHHhcccc--CeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCCcccc
Confidence 9987443334442 22 22233333222 566666665431 1 1 2 3333469999875
Q ss_pred CC-----CCCHH---HHHHHhCCCe-----------eEEccCCcCcc--C-C-CHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 316 DW-----TVDMA---DGRKRLGNDI-----------SVQGNVDPACL--F-S-PLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 316 d~-----~~di~---~~~~~~g~~~-----------~l~G~vd~~~L--~-g-t~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.. ..+-+ .+.+.+.... .-+|++.+.+. - | ++.. +.++++.+|. -+|+..|.
T Consensus 292 ~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~~----~p~~~~~~G~-Dvil~~GG 366 (412)
T cd08213 292 GTAVGKMEGDKEEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPVASGGLHPGL----VPDVIDILGK-DIVIQVGG 366 (412)
T ss_pred CCccCCcCCCHHHHHHHHHHHHhccccccchhccccCccccCCCceEecCCCCChhH----HHHHHHHhCC-ceEEecCC
Confidence 32 11222 2333332211 12567766652 2 1 4443 4566677774 58888888
Q ss_pred CC--CCCCcHHHHHHHHHHHHhcCCCCCCCCccccccc
Q 015201 373 GV--LVGTPEEAVAHFFEVGKSMKYDNSSQNHVFEESK 408 (411)
Q Consensus 373 ~i--~~~tp~Eni~a~~~a~~~yg~~~~~~~~~~~~~~ 408 (411)
++ -|+-+-+..+|+.+++...-.....++.|-+.|.
T Consensus 367 Gi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~e 404 (412)
T cd08213 367 GVHGHPDGTRAGAKAVRQAIEAALEGISLDEYAKDHKE 404 (412)
T ss_pred ceecCCCCchhHHHHHHHHHHHHHcCCCHHHHhhcCHH
Confidence 87 3567788899998887776443344444444443
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.76 E-value=47 Score=31.80 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+...++++.+.++|+..+.. ..+-..-||.-|+.+....++.+.+..++. |++++-=.. +...++.+.++ ++.+-
T Consensus 41 ~~~~~~A~~lk~~g~~~~r~-~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~-d~~~~~~l~~~-vd~~k 115 (266)
T PRK13398 41 EQMVKVAEKLKELGVHMLRG-GAFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVM-DTRDVEEVADY-ADMLQ 115 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEE-eeecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeC-ChhhHHHHHHh-CCEEE
Confidence 34556777788889887643 222244456677777788888888888887 677653222 22346777777 78876
Q ss_pred cCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 315 LDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 315 ~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
+.. ..+..-+++. .|..+.+-- -..+|.+|+...+..+.. .|+...+|
T Consensus 116 Iga~~~~n~~LL~~~a~~gkPV~lk~-----G~~~s~~e~~~A~e~i~~-~Gn~~i~L 167 (266)
T PRK13398 116 IGSRNMQNFELLKEVGKTKKPILLKR-----GMSATLEEWLYAAEYIMS-EGNENVVL 167 (266)
T ss_pred ECcccccCHHHHHHHhcCCCcEEEeC-----CCCCCHHHHHHHHHHHHh-cCCCeEEE
Confidence 643 2243333332 232221111 123589999998877654 34434444
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=81.60 E-value=9.6 Score=37.76 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-PETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-~g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++.. +++++-+|.+-+... + -.-.+.|
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 213 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAGA-MLPDDVRDR--------VRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG 213 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCC-CCHHHHHHH--------HHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC
Confidence 44556667778889999988777665 778776553 34444432 247899999988752 2 2244689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 214 a~~iD 218 (333)
T TIGR03217 214 ATRID 218 (333)
T ss_pred CCEEE
Confidence 99874
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=81.45 E-value=6.7 Score=36.98 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--ccHhHHhcCCCcE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--GFLERMKGTGVDV 312 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--~~l~~~~e~g~d~ 312 (411)
+-.++.++++.++|||++++.-+. +++++++ +.+.+ +.|+++..-.+. ..++.+.++|++.
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~----~~~~~~~--------~~~~~-----~~Pl~~~~~~~~~~~~~~~l~~lG~~~ 222 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLK----DPEEIRA--------FAEAP-----DVPLNVNMTPGGNLLTVAELAELGVRR 222 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC----CHHHHHH--------HHhcC-----CCCEEEEecCCCCCCCHHHHHHCCCeE
Confidence 446677889999999999774332 5544443 44443 468776654444 2579999999999
Q ss_pred EEcCC
Q 015201 313 IGLDW 317 (411)
Q Consensus 313 l~~d~ 317 (411)
+++..
T Consensus 223 v~~~~ 227 (243)
T cd00377 223 VSYGL 227 (243)
T ss_pred EEECh
Confidence 88754
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=81.27 E-value=50 Score=31.30 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhc
Q 015201 229 LLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKG 307 (411)
Q Consensus 229 ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e 307 (411)
+.+.-.+..++.++.+++.|||.|-++-..+ .++++. -++|+++.+.+.. +.|+.+-+ ... .++.-.+
T Consensus 20 ~~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~-~~~~~e-------e~~r~v~~i~~~~-~~piSIDT--~~~~v~e~aL~ 88 (252)
T cd00740 20 IKAEDYDEALDVARQQVEGGAQILDLNVDYG-GLDGVS-------AMKWLLNLLATEP-TVPLMLDS--TNWEVIEAGLK 88 (252)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCHHH-------HHHHHHHHHHHhc-CCcEEeeC--CcHHHHHHHHh
Confidence 3444456777888899999999997765332 455533 2344444444433 56754433 222 4555555
Q ss_pred C--CCcEEE-cCCCC------CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHH----hC-C-CCeEEeCCC
Q 015201 308 T--GVDVIG-LDWTV------DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKC----AG-S-RGHILNLGH 372 (411)
Q Consensus 308 ~--g~d~l~-~d~~~------di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~----~~-~-~gfIls~gc 372 (411)
. |.+.++ +.... .+.++.+++|-.++++-. ++.-.-.|.++..+.++++++. .+ + ..+|+-||-
T Consensus 89 ~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~-~~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgi 167 (252)
T cd00740 89 CCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF-DEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLI 167 (252)
T ss_pred hCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCc
Confidence 4 999885 43221 133445668866766642 2221223444444444444443 23 2 489999998
Q ss_pred CCCC
Q 015201 373 GVLV 376 (411)
Q Consensus 373 ~i~~ 376 (411)
+...
T Consensus 168 g~~~ 171 (252)
T cd00740 168 LPIA 171 (252)
T ss_pred cccc
Confidence 8543
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.27 E-value=28 Score=33.79 Aligned_cols=75 Identities=9% Similarity=-0.011 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-ccHhHHhcCCCcEEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-GFLERMKGTGVDVIG 314 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~~l~~~~e~g~d~l~ 314 (411)
+...+++..+.+.++|.-..+.. .++++ -+++.++.+.+.+... ..+|+.+|.+-.. ..+....+.|++.+.
T Consensus 31 ~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~---~~vPV~lHLDH~~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 31 TQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMG---ITVPVAIHLDHGHYEDALECIEVGYTSIM 104 (293)
T ss_pred HHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcC---CCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 33455566777888875322221 23332 1334555555555531 1469999997442 356777889999998
Q ss_pred cCC
Q 015201 315 LDW 317 (411)
Q Consensus 315 ~d~ 317 (411)
+|.
T Consensus 105 ~d~ 107 (293)
T PRK07315 105 FDG 107 (293)
T ss_pred EcC
Confidence 874
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=81.14 E-value=39 Score=30.59 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=64.5
Q ss_pred HHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE--EEecCCccc-HhHHhcCCCcEEEcCCC---
Q 015201 245 VESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV--LYINGNGGF-LERMKGTGVDVIGLDWT--- 318 (411)
Q Consensus 245 ~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~--~H~CG~~~~-l~~~~e~g~d~l~~d~~--- 318 (411)
.+.|+|+|+++.+- +++.. +.+++.. +.+++ +|.-..... +..-...++|.+-+|..
T Consensus 70 ~~~~~d~Vqlhg~e----~~~~~------------~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~ 132 (203)
T cd00405 70 EELGLDVVQLHGDE----SPEYC------------AQLRARL-GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGG 132 (203)
T ss_pred HhcCCCEEEECCCC----CHHHH------------HHHHhhc-CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCC
Confidence 45799999987532 34332 2233221 23344 444333221 11122357777755431
Q ss_pred --------CCHHHHHHHh-CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHH
Q 015201 319 --------VDMADGRKRL-GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFE 388 (411)
Q Consensus 319 --------~di~~~~~~~-g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~ 388 (411)
.|+..+++.. .-.+.+.||++| +.+.++++...+.|+.+++|=...|+ -+++.++++++
T Consensus 133 ~~Gg~g~~~~~~~l~~~~~~~PvilaGGI~~-----------~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~ 201 (203)
T cd00405 133 GGGGTGKTFDWSLLRGLASRKPVILAGGLTP-----------DNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIE 201 (203)
T ss_pred CCCCCcceEChHHhhccccCCCEEEECCCCh-----------HHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHH
Confidence 3444454432 334677777766 33455555554568888888655555 68899999987
Q ss_pred H
Q 015201 389 V 389 (411)
Q Consensus 389 a 389 (411)
+
T Consensus 202 ~ 202 (203)
T cd00405 202 A 202 (203)
T ss_pred h
Confidence 5
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=80.91 E-value=34 Score=34.11 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH---HH------HHHHHHHHHHHHHHHhhCC-----CCCEE
Q 015201 231 SHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM---WE------QWSEPYIREIVSLVRTKCP-----ETPIV 292 (411)
Q Consensus 231 ~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~---f~------ef~~Py~k~i~~~i~~~~~-----g~~~~ 292 (411)
+.+.+...+.++...++|.|+|.+.-.-+ .|+||.. =. |-=.-+..++++.+++..| +.++.
T Consensus 140 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~ 219 (353)
T cd04735 140 EDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILG 219 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEE
Confidence 33444444556677789999998865433 2566522 11 1223455677777777643 55666
Q ss_pred EEecCC-------c--c---cHhHHhcCCCcEEEcC
Q 015201 293 LYINGN-------G--G---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 293 ~H~CG~-------~--~---~l~~~~e~g~d~l~~d 316 (411)
+...+. . . ++..+.+.|+|.+++.
T Consensus 220 ~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs 255 (353)
T cd04735 220 YRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHIS 255 (353)
T ss_pred EEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 665542 1 1 2356667899999874
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.80 E-value=8 Score=37.45 Aligned_cols=120 Identities=17% Similarity=0.271 Sum_probs=74.8
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCC--CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQL--PPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~i--Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H 294 (411)
.+|.+||.+.++.+. .|+|.+.++=... |.. .| ++-+..+++|-+.+ ++|+++|
T Consensus 152 ~~~T~peea~~Fv~~--------------TgvD~LAvaiGt~HG~Y~~~p----~Ldfd~l~~I~~~~-----~vPLVLH 208 (286)
T PRK12738 152 AFLTDPQEAKRFVEL--------------TGVDSLAVAIGTAHGLYSKTP----KIDFQRLAEIREVV-----DVPLVLH 208 (286)
T ss_pred hcCCCHHHHHHHHHH--------------hCCCEEEeccCcccCCCCCCC----cCCHHHHHHHHHHh-----CCCEEEe
Confidence 678999988776653 3888765543221 221 23 23344555554444 6899999
Q ss_pred ecCCcc--cHhHHhcCCCcEEEcCCCCC---HHHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCC
Q 015201 295 INGNGG--FLERMKGTGVDVIGLDWTVD---MADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGS 363 (411)
Q Consensus 295 ~CG~~~--~l~~~~e~g~d~l~~d~~~d---i~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~ 363 (411)
-+-... .+....++|+.-+|+....- ...+++.+.+. -+.+||..+ ....+.+++.+++.|+.++.
T Consensus 209 GgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (286)
T PRK12738 209 GASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAEN---PQGNDPRYYMRVGMDAMKEVVRNKINVCGS 280 (286)
T ss_pred CCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 875544 47778889999999875332 12233434221 123677644 46678899999999998864
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.77 E-value=31 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKG 307 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e 307 (411)
+|++.+.++|||.|.+.- | .-+...|+++.+|+. |+..-+-.|-.+. .++++.+
T Consensus 75 ~~i~~fa~agad~It~H~-----------E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 75 RYIEAFAKAGADIITFHA-----------E--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHHHhCCCEEEEEe-----------c--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHh
Confidence 677888999999998742 2 456778899999998 5666666666654 4655554
|
|
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=39 Score=39.40 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=54.5
Q ss_pred hHHhcCCCcEEEcCCCCCHHHHHHHh----------CC--CeeEEccC-CcC--ccCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 303 ERMKGTGVDVIGLDWTVDMADGRKRL----------GN--DISVQGNV-DPA--CLFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 303 ~~~~e~g~d~l~~d~~~di~~~~~~~----------g~--~~~l~G~v-d~~--~L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
+.+.+.|+|.+-++...|+.+++..+ +. .+.+...+ |.. ++.|++- +.+...++. .+-..
T Consensus 171 ~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~---ea~~~~l~~--~~~~a 245 (1229)
T PRK09490 171 RGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTT---EAFWNSLRH--AKPLS 245 (1229)
T ss_pred HHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcH---HHHHHHHhc--CCCCE
Confidence 34567899999998888887765333 22 34445556 322 3456542 122222222 25667
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhcCCCCCCCCcccc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSMKYDNSSQNHVFE 405 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~yg~~~~~~~~~~~ 405 (411)
++..|+.. |+.+...++...++...++.=.+|..
T Consensus 246 vGlNCs~G----P~~m~~~l~~l~~~~~~pi~vyPNAG 279 (1229)
T PRK09490 246 IGLNCALG----ADELRPYVEELSRIADTYVSAHPNAG 279 (1229)
T ss_pred EEEcCCCc----HHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 88889876 66777777777666544444334333
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.57 E-value=57 Score=32.15 Aligned_cols=142 Identities=13% Similarity=0.209 Sum_probs=91.6
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE-EecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC-EEEEe
Q 015201 218 MCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ-IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP-IVLYI 295 (411)
Q Consensus 218 ~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~-i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~-~~~H~ 295 (411)
+.+-|||.+-+.+++++++- .+++- --|..|. -+.+|++-+++++++++ +++- +.+.+
T Consensus 138 dy~Vd~eyLl~w~~kVa~~K-----------gkglEaHlDGqGE--------P~lYP~l~~lVqalk~~-~~v~vVSmQT 197 (414)
T COG2100 138 DYVVDPEYLLEWFEKVARFK-----------GKGLEAHLDGQGE--------PLLYPHLVDLVQALKEH-KGVEVVSMQT 197 (414)
T ss_pred ceEecHHHHHHHHHHHHhhh-----------CCCeEEEecCCCC--------CccchhHHHHHHHHhcC-CCceEEEEee
Confidence 55678987777777766642 22221 2244443 24578999999999987 3543 34555
Q ss_pred cCCc-c--cHhHHhcCCCcEEEcC-CCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC
Q 015201 296 NGNG-G--FLERMKGTGVDVIGLD-WTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG 371 (411)
Q Consensus 296 CG~~-~--~l~~~~e~g~d~l~~d-~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g 371 (411)
.|.. + .++.+.+.|.|-++++ +..|.+.+|...|-+ | -+.+.|.+-++-+++ .+=..+++|-
T Consensus 198 ng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~-------d-----Ydv~kvle~aE~i~~--a~idvlIaPv 263 (414)
T COG2100 198 NGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRK-------D-----YDVKKVLEVAEYIAN--AGIDVLIAPV 263 (414)
T ss_pred CceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCcc-------c-----cCHHHHHHHHHHHHh--CCCCEEEeee
Confidence 5653 2 4689999999999774 346888888755421 1 134445444443333 2235666663
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+-||.+.+.+.++++.|++.|.
T Consensus 264 --~lPG~ND~E~~~iIe~A~~iGa 285 (414)
T COG2100 264 --WLPGVNDDEMPKIIEWAREIGA 285 (414)
T ss_pred --ecCCcChHHHHHHHHHHHHhCC
Confidence 5689999999999999999873
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=80.53 E-value=9.1 Score=38.01 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-PETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-~g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
+.+.+.++.+.++|++.|.+.|+.|. +.|+...++ +..+++.. |++++-+|.+-+... + -...+.|
T Consensus 144 e~l~~~a~~~~~~Ga~~i~i~DT~G~-~~P~~v~~~--------v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCVYVVDSAGA-LLPEDVRDR--------VRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCC-CCHHHHHHH--------HHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 44455567778899999988777765 777665443 34444332 467899999988752 2 2244689
Q ss_pred CcEEEc-----CC---CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-C------CeEEeCCCCC
Q 015201 310 VDVIGL-----DW---TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-R------GHILNLGHGV 374 (411)
Q Consensus 310 ~d~l~~-----d~---~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~------gfIls~gc~i 374 (411)
++.+.. .. ..+++.+...+.. . |+++. -+.+.+.+.++..+....+ . +++++-
T Consensus 215 a~~iD~Sl~GlG~~aGN~~tE~lv~~L~~-~----g~~tg---idl~~l~~~a~~~~~p~~~~~~~~~~~~~~~g~---- 282 (337)
T PRK08195 215 ATRIDGSLAGLGAGAGNTPLEVLVAVLDR-M----GWETG---VDLYKLMDAAEDLVRPLMDRPVRVDREALTLGY---- 282 (337)
T ss_pred CCEEEecChhhcccccCccHHHHHHHHHh-c----CCCCC---cCHHHHHHHHHHHHhhhccCCCCCCHHHHhhhh----
Confidence 998742 11 2355554433321 1 22221 1345555555556555442 1 333322
Q ss_pred CCCCcHHHHHHHHHHHHhcCC
Q 015201 375 LVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a~~~yg~ 395 (411)
.++.-..+...-+++++||-
T Consensus 283 -ag~~s~~~~~~~~~~~~~~~ 302 (337)
T PRK08195 283 -AGVYSSFLLHAERAAERYGV 302 (337)
T ss_pred -cccchhhHHHHHHHHHHhCC
Confidence 34445556666667777753
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.39 E-value=12 Score=35.76 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCCcEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGVDVI 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~d~l 313 (411)
.++++.+.++|++.|.+.|..| .++|+...+ ++..+++.. ++++-+|.+.+... + .. -.+.|++.+
T Consensus 144 ~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~v~~--------~~~~~~~~~-~~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 144 LRVYRAVDKLGVNRVGIADTVG-IATPRQVYE--------LVRTLRGVV-SCDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHHHHcCCCEEEECCcCC-CCCHHHHHH--------HHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 3556666788999998877766 578876444 344555544 47889999988652 3 22 336799987
Q ss_pred E
Q 015201 314 G 314 (411)
Q Consensus 314 ~ 314 (411)
.
T Consensus 214 d 214 (262)
T cd07948 214 D 214 (262)
T ss_pred E
Confidence 4
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=80.28 E-value=25 Score=33.37 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCc---EEEcCCCCCHHHHHHHhC--CCeeEEccCCcCccC
Q 015201 271 SEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVD---VIGLDWTVDMADGRKRLG--NDISVQGNVDPACLF 344 (411)
Q Consensus 271 ~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d---~l~~d~~~di~~~~~~~g--~~~~l~G~vd~~~L~ 344 (411)
-...+++.++.+++. +.|+++|+.+... .++.+++.+.. ++++ +.-+...+++.+. -.+.| .+...+
T Consensus 112 Q~~vf~~ql~lA~~~--~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~-fsG~~~~a~~~l~~G~~iS~----~g~it~ 184 (258)
T PRK11449 112 QQWLLDEQLKLAKRY--DLPVILHSRRTHDKLAMHLKRHDLPRTGVVHG-FSGSLQQAERFVQLGYKIGV----GGTITY 184 (258)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecCccHHHHHHHHhcCCCCCeEEEc-CCCCHHHHHHHHHCCCEEEe----Cccccc
Confidence 346677777888877 7999999999887 57888876542 5555 2235666666553 23333 332223
Q ss_pred CCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-------CcHHHHHHHHHHHHhc
Q 015201 345 SPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG-------TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 345 gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-------tp~Eni~a~~~a~~~y 393 (411)
...++ .+++++......+.+-|++...+- --|.++...++.+-+.
T Consensus 185 ~~~~~----~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l 236 (258)
T PRK11449 185 PRASK----TRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCEL 236 (258)
T ss_pred cCcHH----HHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 22333 455555554468899998865221 1156666666664444
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=44 Score=32.36 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE
Q 015201 237 IADYIIYQVESGAHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI 313 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l 313 (411)
+...+++..+.+..+|.-..... ...+. + +.++.+.+.+.. .+|+.+|.+-..+ .+....+.|++.+
T Consensus 26 ~~avi~AAee~~sPvIl~~~~~~~~~~~~----~-~~~~~~~~a~~~-----~vPV~lHLDHg~~~e~i~~ai~~Gf~SV 95 (283)
T PRK08185 26 LRAVVEEAEANNAPAIIAIHPNELDFLGD----N-FFAYVRERAKRS-----PVPFVIHLDHGATIEDVMRAIRCGFTSV 95 (283)
T ss_pred HHHHHHHHHHhCCCEEEEeCcchhhhccH----H-HHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 34455667778888875333222 23331 2 456666555543 5899999974433 5777888999999
Q ss_pred EcCCC-CC----HHHHH------HHhCCCe----eEEccCCcC-------ccCCCHHHHHHHHHHH-HHHhCCCCeEEeC
Q 015201 314 GLDWT-VD----MADGR------KRLGNDI----SVQGNVDPA-------CLFSPLPALTDEIQRV-VKCAGSRGHILNL 370 (411)
Q Consensus 314 ~~d~~-~d----i~~~~------~~~g~~~----~l~G~vd~~-------~L~gt~eeV~~ev~~~-i~~~~~~gfIls~ 370 (411)
.+|.. .+ +...+ +.+|-.+ -..|+..-. .++-+|||+.+.+++. ++.+ ..-+++
T Consensus 96 M~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~L---AvaiGt 172 (283)
T PRK08185 96 MIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTL---AVAIGT 172 (283)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEE---EeccCc
Confidence 88643 22 22222 3333111 112221111 1123788887777663 4433 222334
Q ss_pred CCCC-----CCCCcHHHHHHHHHHH
Q 015201 371 GHGV-----LVGTPEEAVAHFFEVG 390 (411)
Q Consensus 371 gc~i-----~~~tp~Eni~a~~~a~ 390 (411)
-|++ .|+.++|.++.+.+.+
T Consensus 173 ~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 173 AHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred ccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 4554 2556777777776643
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=80.14 E-value=36 Score=31.27 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=75.3
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 015201 221 TAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG 300 (411)
Q Consensus 221 ~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~ 300 (411)
-||++. +...+.+++..++|+|+|.++-+.+ ++++... ++++.+|+.. ++|+++.. |+..
T Consensus 5 iDP~k~--------e~~~~ia~~v~~~gtDaI~VGGS~g--vt~~~~~--------~~v~~ik~~~-~lPvilfp-~~~~ 64 (205)
T TIGR01769 5 IDPEKS--------DEIEKIAKNAKDAGTDAIMVGGSLG--IVESNLD--------QTVKKIKKIT-NLPVILFP-GNVN 64 (205)
T ss_pred cCCCcH--------HHHHHHHHHHHhcCCCEEEEcCcCC--CCHHHHH--------HHHHHHHhhc-CCCEEEEC-CCcc
Confidence 367766 2233466778899999998865422 3444433 3456667654 78999864 4443
Q ss_pred -cHhHHhcCCCcEE---EcCCCCC------H-HHHH---HHhCCCeeEEcc--CCcC----cc-------CCCHHHHHHH
Q 015201 301 -FLERMKGTGVDVI---GLDWTVD------M-ADGR---KRLGNDISVQGN--VDPA----CL-------FSPLPALTDE 353 (411)
Q Consensus 301 -~l~~~~e~g~d~l---~~d~~~d------i-~~~~---~~~g~~~~l~G~--vd~~----~L-------~gt~eeV~~e 353 (411)
..+ ++|.+ ++-+..| . .++. +++|..+...|- ++|. .+ .-++|++..+
T Consensus 65 ~i~~-----~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~ 139 (205)
T TIGR01769 65 GLSR-----YADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAY 139 (205)
T ss_pred ccCc-----CCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHH
Confidence 222 35665 2211111 1 2223 556654444444 3332 11 1356666555
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHH
Q 015201 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVG 390 (411)
Q Consensus 354 v~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~ 390 (411)
+.- .+..|-.-+-|--+.+....++++-++++.+..
T Consensus 140 a~a-a~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~ 175 (205)
T TIGR01769 140 CLA-AKYFGMKWVYLEAGSGASYPVNPETISLVKKAS 175 (205)
T ss_pred HHH-HHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh
Confidence 433 333333456665556665557766665555543
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 411 | ||||
| 1j93_A | 353 | Crystal Structure And Substrate Binding Modeling Of | 1e-111 | ||
| 3cyv_A | 354 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 4e-64 | ||
| 4exq_A | 368 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 1e-61 | ||
| 3gw3_A | 367 | Human Urod Mutant K297n Length = 367 | 3e-50 | ||
| 2inf_A | 359 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 1e-49 | ||
| 3gw0_A | 367 | Urod Mutant G318r Length = 367 | 1e-49 | ||
| 1uro_A | 367 | Uroporphyrinogen Decarboxylase Length = 367 | 2e-49 | ||
| 3gvv_A | 367 | Single-Chain Urod Y164g (Gy) Mutation Length = 367 | 4e-49 | ||
| 1jph_A | 388 | Ile260thr Mutant Of Human Urod, Human Uroporphyrino | 4e-49 | ||
| 1jpi_A | 388 | Phe232leu Mutant Of Human Urod, Human Uroporphyrino | 4e-49 | ||
| 1r3w_A | 367 | Uroporphyrinogen Decarboxylase Y164f Mutant In Comp | 5e-49 | ||
| 1r3r_A | 367 | Uroporphyrinogen Decarboxylase With Mutation D86n L | 5e-49 | ||
| 1r3v_A | 367 | Uroporphyrinogen Decarboxylase Single Mutant D86e I | 5e-49 | ||
| 1jpk_A | 388 | Gly156asp Mutant Of Human Urod, Human Uroporphyrino | 1e-48 | ||
| 1r3s_A | 367 | Uroporphyrinogen Decarboxylase Single Mutant D86g I | 1e-48 | ||
| 2q71_A | 356 | Uroporphyrinogen Decarboxylase G168r Single Mutant | 1e-48 | ||
| 2eja_A | 338 | Crystal Structure Of Uroporphyrinogen Decarboxylase | 9e-48 | ||
| 4ay7_A | 348 | Methyltransferase From Methanosarcina Mazei Length | 2e-06 | ||
| 4ay8_A | 348 | Semet-Derivative Of A Methyltransferase From M. Maz | 3e-05 |
| >pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The Uroporphyrinogen-Iii Decarboxylase From Nicotiana Tabacum: Implications For The Catalytic Mechanism Length = 353 | Back alignment and structure |
|
| >pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Shigella Flexineri: New Insights Into Its Catalytic Mechanism Length = 354 | Back alignment and structure |
|
| >pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd) From Burkholderia Thailandensis E264 Length = 368 | Back alignment and structure |
|
| >pdb|3GW3|A Chain A, Human Urod Mutant K297n Length = 367 | Back alignment and structure |
|
| >pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Bacillus Subtilis Length = 359 | Back alignment and structure |
|
| >pdb|3GW0|A Chain A, Urod Mutant G318r Length = 367 | Back alignment and structure |
|
| >pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase Length = 367 | Back alignment and structure |
|
| >pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation Length = 367 | Back alignment and structure |
|
| >pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex With Coproporphyrinogen-Iii Length = 367 | Back alignment and structure |
|
| >pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n Length = 367 | Back alignment and structure |
|
| >pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In Complex With Coproporphyrinogen-I Length = 367 | Back alignment and structure |
|
| >pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 | Back alignment and structure |
|
| >pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In Complex With Coproporphyrinogen-I Length = 367 | Back alignment and structure |
|
| >pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme In Complex With Coproporphyrinogen-Iii Length = 356 | Back alignment and structure |
|
| >pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex Aeolicus Length = 338 | Back alignment and structure |
|
| >pdb|4AY7|A Chain A, Methyltransferase From Methanosarcina Mazei Length = 348 | Back alignment and structure |
|
| >pdb|4AY8|A Chain A, Semet-Derivative Of A Methyltransferase From M. Mazei Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Length = 353 | Back alignment and structure |
|---|
Score = 508 bits (1311), Expect = 0.0
Identities = 184/350 (52%), Positives = 248/350 (70%), Gaps = 1/350 (0%)
Query: 47 SSSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIV 106
+ +++ PLL+ A +G V RPP W+MRQAGRYM Y+ L EK+P FR+RSE DL+V
Sbjct: 4 EPKAINATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVV 63
Query: 107 QISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL 166
+ISLQPW+ F PDGVI+FSDILTPL +PFDI + +GPVI P+R+ ++ +
Sbjct: 64 EISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIP 123
Query: 167 EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHV 225
EK + +VG++L ILRKEV AAVLGFVGAP+T+A+Y+VEGG+++ +T IK + P V
Sbjct: 124 EKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 183
Query: 226 LRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTK 285
L LL ++A YI YQ +SGA +QIFDSW +L P +E++S PY+++IV V+
Sbjct: 184 LHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLT 243
Query: 286 CPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFS 345
P P++LY +G+GG LER+ TGVDV+ LDWTVDMADGR+RLG ++++QGNVDP LF
Sbjct: 244 HPNLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFG 303
Query: 346 PLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
+T+ I VK AG HILNLGHG+ VGTPEE AHFFE+ K ++Y
Sbjct: 304 SKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Length = 354 | Back alignment and structure |
|---|
Score = 477 bits (1230), Expect = e-169
Identities = 121/338 (35%), Positives = 192/338 (56%), Gaps = 4/338 (1%)
Query: 55 DPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWE 114
+ ++A PV P WMMRQAGRY+ Y+ + F + +L +++LQP
Sbjct: 6 NDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLR 65
Query: 115 AFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVG 173
+ D I+FSDILT A G+ E GP SP+ + + L D E L +V
Sbjct: 66 RYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVM 125
Query: 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHL 233
++++ +R E+ ++GF G+PWT+ATY+VEGG+++ +T IK M + P L LL L
Sbjct: 126 NAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTVIKKMMYADPQALHALLDKL 185
Query: 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP--ETPI 291
+++ Y+ Q+++GA + IFD+WGG L ++Q+S Y+ +IV + + P+
Sbjct: 186 AKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPV 245
Query: 292 VLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALT 351
L+ G G +LE M TG D +GLDWT D+AD R+R+GN +++QGN+DP+ L++P +
Sbjct: 246 TLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIE 305
Query: 352 DEIQRVVKCAGS-RGHILNLGHGVLVGTPEEAVAHFFE 388
+E+ ++ G GH+ NLGHG+ P E F E
Sbjct: 306 EEVATILAGFGHGEGHVFNLGHGIHQDVPPEHAGVFVE 343
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Length = 359 | Back alignment and structure |
|---|
Score = 468 bits (1208), Expect = e-166
Identities = 112/342 (32%), Positives = 178/342 (52%), Gaps = 7/342 (2%)
Query: 49 SSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQI 108
S + + +KAA+G P W MRQAGR YRKL EK+ F E + +L +
Sbjct: 8 SKRETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLF-EITHQPELCAYV 66
Query: 109 SLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK 168
+ P E + D I++ DI+TPLP+ GV +I+ GPVI PIRS ++ L ID E+
Sbjct: 67 TRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQ 126
Query: 169 -LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLR 227
+ +V +++K+L E ++GF GAP+T+A+Y+ EGG ++ Y K+ ++ P
Sbjct: 127 DVPYVLETIKLLVNEQLN-VPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWN 185
Query: 228 TLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP 287
L+S L I Y+ Q+++GA IQIFDSW G L + + +P + I S +
Sbjct: 186 LLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAK--E 243
Query: 288 ETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPL 347
P++++ G +DV+GLDW + + + R + G +VQGN+DP+ L +P
Sbjct: 244 NVPLIMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPW 302
Query: 348 PALTDEIQRVVKCAGSR-GHILNLGHGVLVGTPEEAVAHFFE 388
+ + + ++ G I NLGHGV E +
Sbjct: 303 EVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLKKLTA 344
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Length = 368 | Back alignment and structure |
|---|
Score = 453 bits (1169), Expect = e-160
Identities = 122/351 (34%), Positives = 197/351 (56%), Gaps = 9/351 (2%)
Query: 47 SSSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIV 106
S + + + ++A P P W+MRQAGRY+ Y + SF ++ D
Sbjct: 3 GSMAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYAT 62
Query: 107 QISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL 166
+++LQP E F D I+FSDILT A G+ D GP P+R+E + L D+
Sbjct: 63 EVTLQPLERFPLDAAILFSDILTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDI 122
Query: 167 -EKLQFVGDSLKILRKEVGEHA-----AVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCH 220
L +V D+++ +R+ + + ++GF G+PWT+A Y+VEGG + + T+KSM +
Sbjct: 123 GATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKSMAY 182
Query: 221 TAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVS 280
P ++ +L QA+A Y+ Q+E+GA + IFD+WGG L ++++S YIR +V+
Sbjct: 183 ARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVA 242
Query: 281 LVRTK--CPETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNV 338
++ + P + + G G +LE + TGVD +GLDWTV++ R+R+ +++QGN+
Sbjct: 243 QLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNL 302
Query: 339 DPACLFSPLPALTDEIQRVVKCAGSR-GHILNLGHGVLVGTPEEAVAHFFE 388
DP LF+P A+ E + V+ G+ GH+ NLGHG+ TP E VA +
Sbjct: 303 DPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVD 353
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Length = 338 | Back alignment and structure |
|---|
Score = 449 bits (1157), Expect = e-158
Identities = 101/339 (29%), Positives = 181/339 (53%), Gaps = 9/339 (2%)
Query: 55 DPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWE 114
+ LL+++ +G P+ R P W+MRQAGRYM YRK+ + +F E + DL +ISL P +
Sbjct: 4 NDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLK 63
Query: 115 AFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGD 174
D +IIFSDIL PL GV + E GP + + L D + +V +
Sbjct: 64 ILGVDAIIIFSDILVPLEPLGVKVEFVEGEGPKLSWSGKVS----DLKKYDPSQNAYVYE 119
Query: 175 SLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLT 234
+K +++ E V+GF GAP+T+ +Y++EGG ++ + + K P + L+ LT
Sbjct: 120 IIKRVKEAQDE-VPVIGFAGAPFTLLSYLIEGGASKDFKSTKLFMWENPKEYKRLMDILT 178
Query: 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY 294
+ + Y+ Q+++GA +QIFDSW L + ++ PY+ ++S ++ +TP++ +
Sbjct: 179 ETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELK-DFSDTPVIYF 237
Query: 295 INGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEI 354
G+ F++ D + +DW+VD+ + K QGN++PA L++ + ++
Sbjct: 238 FRGSSSFIDLAVDYRADALSVDWSVDIPELFKIYD--KGFQGNLEPAVLYASEEVIEEKT 295
Query: 355 QRVVKCAGSR-GHILNLGHGVLVGTPEEAVAHFFEVGKS 392
+++ + ++ NLGHG+ E V + ++ KS
Sbjct: 296 LGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Length = 367 | Back alignment and structure |
|---|
Score = 449 bits (1157), Expect = e-158
Identities = 104/341 (30%), Positives = 176/341 (51%), Gaps = 8/341 (2%)
Query: 55 DPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWE 114
+ ++AA G P W MRQAGRY+ +R+ F + + +++LQP
Sbjct: 16 NDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLR 74
Query: 115 AFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL--EKLQFV 172
F D IIFS IL A G+ + +GP P+R E+ L+ L ++ +L +V
Sbjct: 75 RFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYV 134
Query: 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSH 232
++ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL
Sbjct: 135 FQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRI 194
Query: 233 LTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE---- 288
LT A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E
Sbjct: 195 LTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLA 254
Query: 289 -TPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPL 347
P++++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++
Sbjct: 255 PVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASE 314
Query: 348 PALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFE 388
+ +++++ G +I NLGHG+ E V F +
Sbjct: 315 EEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVD 355
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 100.0 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 100.0 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 100.0 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 100.0 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 100.0 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 100.0 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.7 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.69 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 99.65 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 99.55 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.34 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.25 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 99.23 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 99.09 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 97.22 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 95.89 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 95.81 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.28 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 94.51 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.16 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 93.7 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 93.67 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.54 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 92.71 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 92.48 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 92.4 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 92.27 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 91.79 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 91.52 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 91.36 | |
| 1ur4_A | 399 | Galactanase; hydrolase, beta-1, glycoside hydrolas | 91.3 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 90.8 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 90.79 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 90.61 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 90.6 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 90.49 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 90.47 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 90.3 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 90.06 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 89.9 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 89.88 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 89.72 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 89.68 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 89.61 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.57 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 89.49 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 89.49 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 89.25 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 88.93 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 88.93 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.82 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 88.41 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 88.09 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 88.06 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 87.78 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 87.75 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 87.74 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 87.47 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 87.13 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 86.96 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 86.94 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 86.8 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 86.63 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 86.47 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 86.31 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 86.02 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 86.0 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 85.92 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 85.79 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 85.65 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 85.54 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 85.46 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 85.44 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 85.35 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 85.29 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 85.24 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 85.11 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 84.97 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 84.73 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 84.73 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 84.69 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 84.49 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 84.41 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 84.32 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 84.31 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 84.29 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.26 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 84.1 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 83.88 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 83.77 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 83.66 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 83.57 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 83.45 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 83.28 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 83.25 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 83.23 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 83.1 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 83.06 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 83.03 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 82.9 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 82.84 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 82.79 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 82.77 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 82.76 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 82.66 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 82.6 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 82.54 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 82.17 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 82.15 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 81.81 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 81.81 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 81.79 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 81.68 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 81.65 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 81.46 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 81.45 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 81.38 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 81.12 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 81.03 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 81.02 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 80.92 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 80.38 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 80.36 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 80.17 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 80.14 |
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-78 Score=602.90 Aligned_cols=349 Identities=35% Similarity=0.674 Sum_probs=327.8
Q ss_pred CCCCCCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCc
Q 015201 48 SSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDI 127 (411)
Q Consensus 48 ~~~~~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~ 127 (411)
++++++++||+++|++||++||+|||+|+|||||+|+|++++++.++|.|+|.|||.++|++++++++|++|++++++|+
T Consensus 4 ~~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi 83 (368)
T 4exq_A 4 SMAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDI 83 (368)
T ss_dssp CSSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred ccCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 34567899999999999999999999999999999999999887767999999999999999999999999999999999
Q ss_pred ccccccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCC-----ceeEEEecccHHHHHH
Q 015201 128 LTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGE-----HAAVLGFVGAPWTIAT 201 (411)
Q Consensus 128 ~~~~ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~-----~~~v~~~~~gPft~a~ 201 (411)
+++++|||+++.|.++.+|++.+||++.+|+++|+.+|+++ ++.++++++++++++++ ++|++|+++||||+++
T Consensus 84 ~~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~ 163 (368)
T 4exq_A 84 LTIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVPDIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLAC 163 (368)
T ss_dssp THHHHHTTTCEEC----CCEESSCCCSHHHHHTCCCCCHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHH
T ss_pred chhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccCCChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHH
Confidence 99999999999999988999888999999999999999866 99999999999999998 8999999999999999
Q ss_pred HHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015201 202 YIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSL 281 (411)
Q Consensus 202 ~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~ 281 (411)
+|++|+++++|++++++|+++||.+|++|+++++.+++|+++|+++|+|+|+++|+|+++|||++|+||++||+|++++.
T Consensus 164 ~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~ 243 (368)
T 4exq_A 164 YMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQ 243 (368)
T ss_dssp HHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHT
T ss_pred HHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHH
Confidence 99988778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC--CCCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHH
Q 015201 282 VRTKCP--ETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVK 359 (411)
Q Consensus 282 i~~~~~--g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~ 359 (411)
+++.++ ++|+++|+||....++.+.++|+|++++|+.+|+.++++++|++++++||+||..|+||+|+|+++|+++|+
T Consensus 244 l~~~~~g~~~pvi~f~~g~~~~l~~l~~~g~d~i~~d~~~dl~~ak~~~g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~ 323 (368)
T 4exq_A 244 LKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRARERVAGRVALQGNLDPTILFAPPEAIRAEARAVLD 323 (368)
T ss_dssp SCCEETTEECCEEEEETTCGGGHHHHHTSSCSEEECCTTSCHHHHHHHHTTSSEEEEEECGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEcCCcHHHHHHHHHhCCCEEeeCCCCCHHHHHHHhCCCEEEEECCCHHHhCCCHHHHHHHHHHHHH
Confidence 997543 378888888876688999999999999999999999999999999999999999889999999999999999
Q ss_pred HhCC-CCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 360 CAGS-RGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 360 ~~~~-~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
.+++ +||||++||+++++||+||++||++++|+||++
T Consensus 324 ~~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~~~~ 361 (368)
T 4exq_A 324 SYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRHSRA 361 (368)
T ss_dssp HHCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHhCHH
Confidence 9985 899999999999999999999999999999865
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-73 Score=566.43 Aligned_cols=347 Identities=30% Similarity=0.571 Sum_probs=325.3
Q ss_pred CCCCCCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCc
Q 015201 48 SSSSSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDI 127 (411)
Q Consensus 48 ~~~~~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~ 127 (411)
..+.+++|||+++|++||++||+|||+++|+|+|+|+|++++.+. ++.+++.||+.+++++++++++|++|++++++|+
T Consensus 9 ~~Mt~~~~er~~~a~~ge~~dr~Pvw~mrqagr~lpey~~~~~~~-~~~e~~~~pe~~~e~~l~~~~~~~~D~~~~~~di 87 (367)
T 1r3s_A 9 QGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGI 87 (367)
T ss_dssp --CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTS-CHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCT
T ss_pred hhcCcchhHHHHHHHcCCCCCCCceehhhhcCcccHHHHHHhcCC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccc
Confidence 334446799999999999999999999999999999999998888 7999999999999999999999999999999999
Q ss_pred ccccccCCCeeeecCCCCCccCCCCCChhhhhcCCCC-Cccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHc
Q 015201 128 LTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHI-DLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVE 205 (411)
Q Consensus 128 ~~~~ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~-d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~g 205 (411)
.+++++||+++.+.++.+|++.+||++.+|+++|+.+ |+++ ++.++++++++++++++++|++++++||||++++|+.
T Consensus 88 ~~~~~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~~l~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~e 167 (367)
T 1r3s_A 88 LVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVE 167 (367)
T ss_dssp THHHHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHH
T ss_pred cccHHHcCCeEEeCCCCCCCcCCCCCCHHHHHhccCCCCchhhhhHHHHHHHHHHHHcCCCccEEEEcCcHHHHHHHHHc
Confidence 9999999999999988889888899999999999877 7765 8999999999999999899999999999999999995
Q ss_pred CCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH-h
Q 015201 206 GGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVR-T 284 (411)
Q Consensus 206 g~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~-~ 284 (411)
|+++++|++++++|+++||.+|++++++++.+++|+++++++|+|+|+++|+|++++||++|+||++||+|++++.++ +
T Consensus 168 gg~~~~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~ 247 (367)
T 1r3s_A 168 GGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKAR 247 (367)
T ss_dssp SSCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 545778999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred hCC----CCCEEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHH
Q 015201 285 KCP----ETPIVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKC 360 (411)
Q Consensus 285 ~~~----g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~ 360 (411)
+.+ ++|+++|+||+...++++.++|+|++++|+.+|+.++++++|++++++||+||.+|+||+|+|+++|+++|+.
T Consensus 248 ~~~~g~~~~p~i~~~~G~~~~l~~l~~~g~d~i~~d~~~dl~~a~~~~g~~~~l~Gnldp~~L~gt~e~i~~~v~~~l~~ 327 (367)
T 1r3s_A 248 LREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDD 327 (367)
T ss_dssp HHHTTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHH
T ss_pred hccccCCCCCeEEEcCCcHHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCCeEEEeCCChHHhcCCHHHHHHHHHHHHHH
Confidence 622 4799999999955899999999999999999999999999999999999999977789999999999999999
Q ss_pred hCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 361 AGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 361 ~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
++++|||+++||+++++||+||+++|++++++|++
T Consensus 328 ~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~~~ 362 (367)
T 1r3s_A 328 FGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSR 362 (367)
T ss_dssp HCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77689999999999999999999999999999975
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-71 Score=552.96 Aligned_cols=344 Identities=35% Similarity=0.682 Sum_probs=322.0
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
+++|||+++|++||++||+|||+++|+|+|+|+|++++++++++.+++.||+.+++++++++++|++|++++++|+.+++
T Consensus 3 ~~~~er~~~a~~g~~~dr~Pv~~mrqagr~~pey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~~~ 82 (354)
T 3cyv_A 3 ELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVP 82 (354)
T ss_dssp CCCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHHHHSSHHHHTTCHHHHHHHHHTGGGTSCCSCEECCCCTTHHH
T ss_pred CCchHHHHHHHcCCCCCCCCeeehhhhccccHHHHHHHhccCCHHHHHcCHHHHHHHHHHHHHHhCCCEEeecccccccH
Confidence 57899999999999999999999999999999999888877569999999999999999999999999999999999999
Q ss_pred ccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 132 PAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 132 ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
++||+++.+.++.+|++.+||++.+|+++|+.+++++ ++.++++++.+++++++++|++++++||||++++|++|++++
T Consensus 83 ~a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~~~~~~~~~v~eai~~l~~~~~~~~plig~~~~P~tla~~l~~g~~~~ 162 (354)
T 3cyv_A 83 DAMGLGLYFEAGEGPRFTSPVTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGSSK 162 (354)
T ss_dssp HTTTSCEEECSSSCEEESSCCCSHHHHHTCCCCCTTTTTHHHHHHHHHHHHHTTTSSCEEEEEECHHHHHHHHHHSSCCS
T ss_pred HHcCCeEEeCCCCCCccCCCCCCHHHHHhcCCCChhhhHHHHHHHHHHHHHHhCCCeeEEEeCCcHHHHHHHHhCCCCCc
Confidence 9999999999888898888999999999998767755 899999999999999888999999999999999999876778
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC--CC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC--PE 288 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~--~g 288 (411)
+|++++++|+++||.+|++++++++.+++++++++++|+|+|+++|+|++++||++|+||++||+|++++.+++++ ++
T Consensus 163 ~~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ 242 (354)
T 3cyv_A 163 AFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRR 242 (354)
T ss_dssp SCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEE
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999763 24
Q ss_pred CCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCe
Q 015201 289 TPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGH 366 (411)
Q Consensus 289 ~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gf 366 (411)
+| ++|.||+.. .++++.++|+|++++|+.+|+.++++++|++++++||+||..|.||+|+|+++|+++|+.+++ +||
T Consensus 243 ~~-ii~~~~g~~~~l~~l~~~g~d~i~~d~~~dl~~~~~~~g~~~~l~Gn~dp~~l~~t~e~i~~~v~~~l~~~g~~~g~ 321 (354)
T 3cyv_A 243 VP-VTLFTKGGGQWLEAMAETGCDALGLDWTTDIADARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGH 321 (354)
T ss_dssp CC-EEEECTTTTTTHHHHHTTSCSEEECCTTSCHHHHHHHHTTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTSSCE
T ss_pred CC-EEEECCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHhCCCeEEEecCChHHhCCCHHHHHHHHHHHHHHhCCCCCe
Confidence 77 455566655 789999999999999999999999999999999999999987889999999999999999775 799
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
|+++||+++++||+||+++|++++++|++.
T Consensus 322 I~~~g~gi~~~~p~env~a~v~~v~~~~~~ 351 (354)
T 3cyv_A 322 VFNLGHGIHQDVPPEHAGVFVEAVHRLSEQ 351 (354)
T ss_dssp EBCBSSCCCTTSCHHHHHHHHHHHHHHHGG
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999853
|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=546.05 Aligned_cols=342 Identities=53% Similarity=0.973 Sum_probs=321.9
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
++|||+++|++||++||+|||+++|+|+|+|+|++++.+.+++.+++.||+.+++++++++++|++|++++++|+.++++
T Consensus 10 t~~er~~~a~~g~~~dr~Pv~~mrqagr~lpey~~~~~~~~~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~~~~ 89 (353)
T 1j93_A 10 ATQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLS 89 (353)
T ss_dssp -CCCHHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTHHH
T ss_pred ChhHHHHHHHCCCCCCcCCeeehHhhccchHHHHHHHhccccHHHHhcCHHHHHHHHHHHHHHhCCCEEEecCCcccCHH
Confidence 57999999999999999999999999999999999998876699999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCcc
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRT 211 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~ 211 (411)
+||+++.+.++.+|++.+||++.+|+++|+.+++++ ++.++++++.+++++++++|++++++||||++++|++|+++++
T Consensus 90 a~G~~~~~~~~~gp~~~~pi~~~~d~~~l~~~~~~~~~~~v~e~~~~l~~~~~~~~~~~g~~~~P~tla~~l~~g~~~~~ 169 (353)
T 1j93_A 90 GMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKN 169 (353)
T ss_dssp HTTCCEEEETTTEEEESSCCCSHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSS
T ss_pred HcCCeEEecCCCCCeeCCCCCCHHHHHhcCCCChhhhHHHHHHHHHHHHHHhCCCceEEEecChHHHHHHHHHcCCCccc
Confidence 999999999888898888999999999998447655 8999999999999998889999999999999999998766788
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCE
Q 015201 212 YTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI 291 (411)
Q Consensus 212 ~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~ 291 (411)
|++++++||++||.+|++++++++.+++++++++++|+|+|+++|+|++++||++|+||++||++++++.++++++++|+
T Consensus 170 ~~~~~~~~~~~Pe~~~~ll~~l~~~~~~~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~ 249 (353)
T 1j93_A 170 FTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL 249 (353)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987556775
Q ss_pred EEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 292 VLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 292 ~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
+|.||+.. .++++.++|+|++++|+.+|+.++++++|++++++||+||..|.||+|+|+++++++++.++++|||+++
T Consensus 250 -ih~c~g~~~~l~~l~~~g~d~~~~d~~~d~~~~~~~~g~~~~l~Gnldp~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~ 328 (353)
T 1j93_A 250 -ILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNL 328 (353)
T ss_dssp -EEECSSCTTTGGGGGGGCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCB
T ss_pred -EEECCChHHHHHHHHhcCCCEEEeCCCCCHHHHHHHcCCCeEEEecCCHHHHcCCHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 59998877 6899999999999999999999999999999999999999767899999999999999998778999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 371 GHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 371 gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
||++++++|+||+++|++++++||+
T Consensus 329 g~gi~~~~~~enl~a~ve~v~~~~~ 353 (353)
T 1j93_A 329 GHGIKVGTPEENFAHFFEIAKGLRY 353 (353)
T ss_dssp SSCCCTTCCHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999974
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=542.71 Aligned_cols=335 Identities=30% Similarity=0.598 Sum_probs=314.3
Q ss_pred CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccc
Q 015201 53 SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLP 132 (411)
Q Consensus 53 ~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~e 132 (411)
|+|||+++|++||++||+|||+++|+|+|+|+|++++.+++++.+++.||+.+++++++++++||+|++++++|+.++++
T Consensus 2 t~~er~~~a~~g~~~dr~Pv~~mrqagr~lpe~~~~~~~~~~~~~~~~~pe~~~e~~~~~~~~~~~D~~~~~~di~~~~~ 81 (338)
T 2eja_A 2 PKNDLLLRSLRGEPIGRFPVWLMRQAGRYMPEYRKIRNRVKNFLELCKNVDLATEISLLPLKILGVDAIIIFSDILVPLE 81 (338)
T ss_dssp CCCCHHHHHHTTCCCSSCCBCCTTCSSTTSHHHHHHHTTSSSHHHHHHCHHHHHHHHHHHHHHHCCSCEECSCCTTGGGG
T ss_pred CchHHHHHHHcCCCCCCCCcchhhhhccccHHHHHHHhccccHHHHhCCHHHHHHHHHHHHHHhCCCEEEeccCcceeHH
Confidence 57999999999999999999999999999999999998886799999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccchHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccH
Q 015201 133 AFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTY 212 (411)
Q Consensus 133 a~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~ 212 (411)
+||+++.+.++.+|.+ ++.+|+++|+.++++.++.++++++.+++++ +++|++++++||||++++|++|+++++|
T Consensus 82 a~G~~~~~~~~~gP~i----~~~~d~~~l~~~~~~~l~~v~eai~~l~~~~-~~~plig~~~~P~tla~~l~egg~~~~~ 156 (338)
T 2eja_A 82 PLGVKVEFVEGEGPKL----SWSGKVSDLKKYDPSQNAYVYEIIKRVKEAQ-DEVPVIGFAGAPFTLLSYLIEGGASKDF 156 (338)
T ss_dssp GGTCEEEEETTTEEEE----ECCSCGGGSCCCCGGGGHHHHHHHHHHHHHC-CSSCEEEEEECHHHHHHHHHHTSCCSSC
T ss_pred HcCCeEEeCCCCCCCC----CCHHHHHhcCCCChhhhHHHHHHHHHHHHHh-cCccEEEecchHHHHHHHHHcCCCCccH
Confidence 9999999998777754 7789999998777733999999999999998 6799999999999999999965556789
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEE
Q 015201 213 TTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292 (411)
Q Consensus 213 e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~ 292 (411)
++++++|+++||.+|++++++++.+++|+++++++|+|+|+++|+|+++|||++|+||++||+|++++.++++ +|+|++
T Consensus 157 ~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i 235 (338)
T 2eja_A 157 KSTKLFMWENPKEYKRLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVI 235 (338)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 468999
Q ss_pred EEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC-CCeEEeCC
Q 015201 293 LYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS-RGHILNLG 371 (411)
Q Consensus 293 ~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~-~gfIls~g 371 (411)
+|+||+...++++.++|+|++++|+.+|+.++++++ +++++||+||.+|+||+|+|+++|+++|+.+++ +|||+++|
T Consensus 236 ~~~~g~~~~l~~l~~~g~d~~~~d~~~dl~~~~~~~--~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g 313 (338)
T 2eja_A 236 YFFRGSSSFIDLAVDYRADALSVDWSVDIPELFKIY--DKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRYVFNLG 313 (338)
T ss_dssp EEESSHHHHHHHHTTSCCSEEECCTTSCHHHHHHHC--CSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBS
T ss_pred EEcCCcHHHHHHHHHcCCCEEEeCCCCCHHHHHHhC--CeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCC
Confidence 999999447899999999999999999999999999 689999999977789999999999999999776 79999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 372 HGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 372 c~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
|+++++||+||+++|++++++||.
T Consensus 314 ~gi~~~~p~en~~a~v~~v~~~~~ 337 (338)
T 2eja_A 314 HGLAPDMELEKVKYLVDLVKSFPL 337 (338)
T ss_dssp SCCCTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999985
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-70 Score=542.32 Aligned_cols=339 Identities=32% Similarity=0.613 Sum_probs=318.9
Q ss_pred CCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCccccc
Q 015201 52 SSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPL 131 (411)
Q Consensus 52 ~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ 131 (411)
-+++||+++|++||++||+|||+++|+|+|+|+|++++.+. ++.+++.||+.+++++++++++|++|++++++|+.+++
T Consensus 11 ~t~~er~~~al~g~~~dr~Pvw~mrqagr~lpey~~~~~~~-~~~~~~~~pe~~~e~~l~~~~~~~~D~~~~~~di~~~~ 89 (359)
T 2inf_A 11 ETFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKY-GLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIMTPL 89 (359)
T ss_dssp -CCCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHCCSCEECCCCTTTTG
T ss_pred CChHHHHHHHHcCCCCCcCCEeehhhhCcccHHHHHHHcCC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecccccccH
Confidence 37899999999999999999999999999999999988887 69999999999999999999999999999999999999
Q ss_pred ccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCc
Q 015201 132 PAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTR 210 (411)
Q Consensus 132 ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~ 210 (411)
++||+++.+.++.+|++.+||++.+|+++|+.+++++ ++.++++++.+++++ +++|++++++||||++++|++|++++
T Consensus 90 ~a~G~~~~~~~~~gP~~~~pi~~~~d~~~l~~~~~~~~l~~~~ea~~~l~~~~-~~~~l~g~~~~P~tla~~l~~gg~s~ 168 (359)
T 2inf_A 90 PSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETIKLLVNEQ-LNVPLIGFSGAPFTLASYMTEGGPSK 168 (359)
T ss_dssp GGGTCCEECCSSSCCEESSCCCSHHHHHTCCCCCHHHHSHHHHHHHHHHHHHT-CSSCEEEEEECHHHHHHHHHHCSCCS
T ss_pred HHcCCEEEecCCCCCCcCCCCCCHHHHHhcCCCCccchHHHHHHHHHHHHHHh-CCcceEEEcCcHHHHHHHHHcCCCcc
Confidence 9999999999888998888999999999998767755 899999999999999 67899999999999999999654567
Q ss_pred cHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 015201 211 TYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP 290 (411)
Q Consensus 211 ~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~ 290 (411)
+|++++++||++||.+|++++++++.+++++++++++|+|+|+++|+|++++||++|+||++||++++++.+++. ++|
T Consensus 169 ~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~--g~~ 246 (359)
T 2inf_A 169 NYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKE--NVP 246 (359)
T ss_dssp SCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGG--CSC
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHc--CCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEecCCcccHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCC-CeEEe
Q 015201 291 IVLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSR-GHILN 369 (411)
Q Consensus 291 ~~~H~CG~~~~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~-gfIls 369 (411)
+++|+||+...++++.++|+|++++|+.+|+.+++++ |++++++||+||..|.||+|+|+++|+++++...++ |||++
T Consensus 247 ~i~~~~G~~~~l~~l~~~g~d~~~~d~~~d~~~~~~~-g~~~~l~Gnldp~~l~~t~e~I~~~v~~~l~~~~~~~g~Il~ 325 (359)
T 2inf_A 247 LIMFGVGASHLAGDWHDLPLDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFN 325 (359)
T ss_dssp EEEECTTCGGGHHHHHTSSCSEEECCTTSCHHHHHHT-TCCSEEECCBCGGGGGSCHHHHHHHHHHHHHHHTTSSCEEBC
T ss_pred EEEEcCCcHHHHHHHHHhCCCEEEeCCCCCHHHHHHc-CCCEEEEecCChHHhcCCHHHHHHHHHHHHHhCCCCCCeEEe
Confidence 9999999955889999999999999999999999999 999999999999767899999999999999994345 99999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 370 LGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 370 ~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+||++++++|+||+++|++++++|++
T Consensus 326 ~gcgi~~~~~~enl~a~ve~v~~~~~ 351 (359)
T 2inf_A 326 LGHGVFPDVSPEVLKKLTAFVHEYSQ 351 (359)
T ss_dssp BSSCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999974
|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-67 Score=516.61 Aligned_cols=328 Identities=22% Similarity=0.332 Sum_probs=290.1
Q ss_pred cCCCCC-CcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeecc
Q 015201 47 SSSSSS-SSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFS 125 (411)
Q Consensus 47 ~~~~~~-~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~ 125 (411)
|+.++. |+|||+++|++||++||+|||+|+|+| +++|++++ +. ++.+++.|||.++|++++++++||+|++++++
T Consensus 7 m~~M~~MT~kER~l~al~ge~~DR~Pvw~mrqag--~~e~~~~~-~~-~f~e~~~~pe~~ae~tl~~~~~~~~Da~iifs 82 (348)
T 4ay7_A 7 MTDMSEFTLKTRLLAALKGEPVDKVPVCSVTQTG--IVELMDVV-GA-PWPEAHTNPELMAKLALANHELSGLEAVRLPY 82 (348)
T ss_dssp -----CCCHHHHHHHHHHTCCCSSCCBCCSSCCC--CHHHHHHH-TC-CTTHHHHCHHHHHHHHHHHHHTTCCSSEEECS
T ss_pred ccccccCCHHHHHHHHHcCCCCCCCCEEechhhh--HHHHHHHh-CC-CHHHHhCCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 445554 689999999999999999999999987 57787765 33 69999999999999999999999999999999
Q ss_pred CcccccccCCCeeeecC-CCCCcc-CCCCCChhhhhcCCCCC-c--cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHH
Q 015201 126 DILTPLPAFGVPFDIEE-VRGPVI-QSPIRSEEGLKALHHID-L--EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTI 199 (411)
Q Consensus 126 d~~~~~ea~G~~~~~~~-~~~p~~-~~pi~~~eD~~~l~~~d-~--~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~ 199 (411)
|+++++++||+++.|.+ +.+|.+ .+++.+ |++.+..++ + +. ++.++++++++++++++++|++|+++||||+
T Consensus 83 Dil~~~ea~G~~v~~~~~~~~P~v~~~~~~~--~~~~~~~~~~~~~~~~l~~v~eai~~l~~~l~~~~pligf~g~P~Tl 160 (348)
T 4ay7_A 83 CLTVLVEAMGCEINMGTKNRQPSVTGHPYPK--DLEGAAVPADLLQRGRIPVVLEAIKIIREKVGPDVPIVGGMEGPVTV 160 (348)
T ss_dssp CSCHHHHHTTCEEECCBTTBCCEEEECSCSS--CCTTCCCCTTGGGSTTHHHHHHHHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred ccccchHHcCCeEEecCCCCCCccccCCCcc--hHHHhhCCccccchhhHHHHHHHHHHHHHHhCCCeeEEEeccchHHH
Confidence 99999999999999954 556754 556543 444444432 2 22 8999999999999999999999999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHH
Q 015201 200 ATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIRE 277 (411)
Q Consensus 200 a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~ 277 (411)
+++++| .++++++++++||.+|++|+++++.+++|+++|+++|+|+|+++|+|++ +|||++|++|++||+|+
T Consensus 161 a~~l~~------~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~ 234 (348)
T 4ay7_A 161 ASDLVS------VKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQK 234 (348)
T ss_dssp HHHHHC------HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHH
T ss_pred HHhccc------chHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHH
Confidence 999998 4788999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCC-CHHHHHHHhCCCeeEEccCCcC-cc-CCCHHHHHHH
Q 015201 278 IVSLVRTKCPETPIVLYINGNGG-FLERMKGTGVDVIGLDWTV-DMADGRKRLGNDISVQGNVDPA-CL-FSPLPALTDE 353 (411)
Q Consensus 278 i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~-di~~~~~~~g~~~~l~G~vd~~-~L-~gt~eeV~~e 353 (411)
+++.+++ . .++|+||+.. .++++.++|+|++++|+.+ ++.++|+.+|++++++||+||. .| .||+|+|+++
T Consensus 235 i~~~~~~----~-~iih~~g~~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~g~~~~l~Gnldp~~~l~~g~~e~i~~~ 309 (348)
T 4ay7_A 235 FASSVNS----V-TVLHICGNVNPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNVSSPFTLLPGPVDKIKAE 309 (348)
T ss_dssp HHHHSSS----E-EEEECCSCCHHHHHHHHTSCCSEEECCGGGCCHHHHHHHHTTSSEEEEEECCCCCCTTCCHHHHHHH
T ss_pred HHhhccC----C-cEEEecCCcHHHHHHHHHhccccccccchhhHHHHHHHHhCCCEEEEcCCCChHhhcCCCHHHHHHH
Confidence 9999963 3 5789999988 6899999999999999876 6899999999999999999986 34 5999999999
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 354 IQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 354 v~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
|+++++ ++|||+++||+++++||+||++||++++|+|.
T Consensus 310 v~~~l~---~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~ 347 (348)
T 4ay7_A 310 AKEALE---GGIDVLAPGCGIAPMTPLENVKALVAARDEFY 347 (348)
T ss_dssp HHHHHH---TTCSEEEESSSCCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHh---CCCCEEeCCCccCCCCCHHHHHHHHHHHHHhc
Confidence 999997 35899999999999999999999999999995
|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=174.41 Aligned_cols=205 Identities=15% Similarity=0.080 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++.+++..+ .|+.+++.||+|++.++++. ++...+++++.+++.+.+.++.+.++|++.
T Consensus 524 ~ve~~~~l~~~t~--~pvK~~l~GP~Tl~~~~~~r---------------~~~~~~el~~~lA~a~~~ei~~L~~aG~~~ 586 (755)
T 2nq5_A 524 TVEETVYAQSLTD--RPVKGMLTGPITITNWSFER---------------TDIPRDQLFNQIGLAIKDEIKLLENAGIAI 586 (755)
T ss_dssp SHHHHHHHHHTCS--SCBEEEEECHHHHHHHSBCC---------------SSSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcC--CCeEEEecCHHHHHHHHhcc---------------CcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 4567777777654 36789999999999887641 122567899999999999999999999999
Q ss_pred EEEecCCCC--C----CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-CHH
Q 015201 252 IQIFDSWGG--Q----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-DMA 322 (411)
Q Consensus 252 i~i~D~~~~--~----iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-di~ 322 (411)
|++.|+..+ + ++++.|.+++.+.++++++.++. +..+.+|+| |+.. .++.+.++++|+++++... |+.
T Consensus 587 IQiDEP~l~~~l~~~~~~~~~~~~~av~~l~~~~~~v~~---~~~i~~HiC~G~~~~i~~~L~~~~aD~islE~~rsd~e 663 (755)
T 2nq5_A 587 IQVDEAALREGLPLRKSKQKAYLDDAVHAFHIATSSVKD---ETQIHTHMCYSKFDEIIDAIRALDADVISIETSRSHGD 663 (755)
T ss_dssp EEEEECCHHHHSCSSHHHHHHHHHHHHHHHHHHHSSSCT---TSEEEEEECCSCCSTTHHHHHHHCCSEEEC--------
T ss_pred EEEcCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEeccCCcHHHHHHHHhCCCCEEEEecCCCCHH
Confidence 999997542 3 67889999999999999988753 456899999 9887 6799999999999998533 565
Q ss_pred HHHHHh--C-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH---HHHHHHHHHHhcCC
Q 015201 323 DGRKRL--G-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE---AVAHFFEVGKSMKY 395 (411)
Q Consensus 323 ~~~~~~--g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E---ni~a~~~a~~~yg~ 395 (411)
.++... + ++.++.|++|+... ..|+|+|++.++++++..+..+++++|+|++..-++.+ ++++|+++++++..
T Consensus 664 ~L~~~~~~~~~~~v~lGvvd~~s~~ve~~eeV~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr~ 743 (755)
T 2nq5_A 664 IIESFETAVYPLGIGLGVYDIHSPRVPTKEEVVANIERPLRQLSPTQFWVNPDCGLKTRQEPETIAALKVLVAATKEVRQ 743 (755)
T ss_dssp -----------CEEEEECSCTTSSCCCCHHHHHHHHHGGGGSSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCeEEEeeccCccCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555532 1 45789999999875 59999999999999998776789999999999888884 99999999998864
Q ss_pred C
Q 015201 396 D 396 (411)
Q Consensus 396 ~ 396 (411)
.
T Consensus 744 ~ 744 (755)
T 2nq5_A 744 K 744 (755)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=171.74 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++.+++..+ .|+.+++.||+|++.++++. ++...+++++.+++.+.+.++.+.++|++.
T Consensus 539 ~ve~~~~l~~~~~--~pvK~~l~GP~Tl~~~~~~r---------------~~~~~~~l~~~lA~a~~~ev~~L~~aG~~~ 601 (765)
T 1u1j_A 539 TVFWSAMAQSMTS--RPMKGMLTGPVTILNWSFVR---------------NDQPRHETCYQIALAIKDEVEDLEKGGIGV 601 (765)
T ss_dssp STHHHHHHTTSCS--SCBEEEEECHHHHHHTSEEC---------------TTSCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhc--CCeEEEecCHHHHHHHHhcc---------------CcCcHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 3456666766553 36789999999999877641 122568899999999999999999999999
Q ss_pred EEEecCCCC--C----CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC-CHH
Q 015201 252 IQIFDSWGG--Q----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV-DMA 322 (411)
Q Consensus 252 i~i~D~~~~--~----iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~-di~ 322 (411)
|++.|+... + ++++.|.+++.+.++++++.++. +..+.+|+| |+.. .++.+.++++|+++++... |+.
T Consensus 602 IQiDEP~l~~~l~~~~~~~~~~~~~av~~~~~~~~~v~~---~~~i~~HiC~G~~~~i~~~l~~~~~D~islE~~rs~~e 678 (765)
T 1u1j_A 602 IQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEK 678 (765)
T ss_dssp EEEECTTSSTTCCSSGGGHHHHHHHHHHHHHHHHTTSCS---SSEEEEECSCSCCTTTHHHHHTTCCSEEECCBSSSCTT
T ss_pred EEECCCcccccccccCCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEeccCCcHHHHHHHHhCCCCEEEEeCCCCCHH
Confidence 999997543 3 67899999999999999988753 456899999 9887 6799999999999998533 666
Q ss_pred HHHHHh---C-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH---HHHHHHHHHHhcC
Q 015201 323 DGRKRL---G-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE---AVAHFFEVGKSMK 394 (411)
Q Consensus 323 ~~~~~~---g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E---ni~a~~~a~~~yg 394 (411)
.++... + ++.++.|+||+... ..|+|+|.+.++++++..+..+++++|+|++..-++.+ ++++|+++++++.
T Consensus 679 ~L~~~~~~~~~~~~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~e~l~lsPdCGl~t~t~~e~~~kL~~mveaA~~vr 758 (765)
T 1u1j_A 679 LLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIR 758 (765)
T ss_dssp GGGGGTTTTCCCSEECCBSSCTTSSSCCTHHHHHHHHHHHHHSSCSTTBCBBCSSCSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEEeecCCccCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 665542 2 56888999999875 59999999999999998877889999999999888884 9999999999886
Q ss_pred C
Q 015201 395 Y 395 (411)
Q Consensus 395 ~ 395 (411)
.
T Consensus 759 ~ 759 (765)
T 1u1j_A 759 S 759 (765)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=154.35 Aligned_cols=211 Identities=14% Similarity=0.069 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhCCcee-EEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 172 VGDSLKILRKEVGEHAA-VLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~-v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..+.++.+++..++ .| +.+++.||++++..+... ++ .| ++.++++++.+++.+.+.++.+.++|++
T Consensus 116 ~~~~~~~l~~~~~~-~~~vK~~l~gP~tl~~~~~~~------~~----~Y--~~~~~~l~~~la~a~~~ei~~l~~aG~~ 182 (375)
T 1ypx_A 116 FIEDFIFLKEAVGD-NHVAKQTIPSPAMLHYRGDIE------YQ----PY--LDDAEKFANDLATAYQKAIQAFYDAGCR 182 (375)
T ss_dssp HHHHHHHHHHHHCS-SSEECEEEECTHHHHHHEEEC------SH----HH--HHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcC-CCceEEecCCHHHHHHHHhcc------hh----hc--cChHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 56777888887754 34 588899999999887641 12 23 2445889999999999999999999999
Q ss_pred EEEEecCCC-CCC-------------CHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-----------CCcc-cHhH
Q 015201 251 CIQIFDSWG-GQL-------------PPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-----------GNGG-FLER 304 (411)
Q Consensus 251 ~i~i~D~~~-~~i-------------Sp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-----------G~~~-~l~~ 304 (411)
.|++.|+.. .++ +++.|.+++.+.++++++.+.+ +..+.+|+| |+.. .++.
T Consensus 183 ~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~---~~~i~~HiC~gn~~s~~~~~g~~~~i~~~ 259 (375)
T 1ypx_A 183 YLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPA---DMVITMHICRGNFRSTWIAEGGYGPVAET 259 (375)
T ss_dssp EEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCT---TCEEEEEECCC----------CCSGGGHH
T ss_pred EEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCC---CCeEEEEEeccccCCccccccchHHHHHH
Confidence 999999743 244 6789999999999999887753 357899999 4555 6799
Q ss_pred Hh-cCCCcEEEcCCC---C-CHHHHHHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC--
Q 015201 305 MK-GTGVDVIGLDWT---V-DMADGRKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL-- 375 (411)
Q Consensus 305 ~~-e~g~d~l~~d~~---~-di~~~~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~-- 375 (411)
+. ++++|+++++.. . +++.+++.-. ++.++.|.||+... ..|+|+|++.++++++..+...++++|+|++.
T Consensus 260 l~~~~~~d~i~lE~~~~r~g~~e~L~~~~~~~~~v~lGvvd~~~~~~e~~e~v~~ri~~a~~~v~~e~l~lsPdCGl~s~ 339 (375)
T 1ypx_A 260 LFGKLNIDGFFLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQCGFAST 339 (375)
T ss_dssp HHTTCCCSEEEEECCSCC---CCTTCCCCCTTCEEEEEEECSSSCC-CCSHHHHHHHHHHHHHSCGGGEEEEESSCCC--
T ss_pred HHhhCCCCEEEEEecCCCCCcHHHHHHhhhcCCeEEEeeecCcCCCCCCHHHHHHHHHHHHHhcCccceEecCCCCcccc
Confidence 98 999999998732 2 3444443221 56888999999875 59999999999999999876789999999998
Q ss_pred ----CCCc---HHHHHHHHHHHHhcCCCCC
Q 015201 376 ----VGTP---EEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 376 ----~~tp---~Eni~a~~~a~~~yg~~~~ 398 (411)
.-++ .+++++|++++++....+.
T Consensus 340 ~~g~~~t~~~a~~kL~~~v~~A~~~~~~~~ 369 (375)
T 1ypx_A 340 EEGNILTEEEQWDKLRYVVRLANDIWGELE 369 (375)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHSCC--
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhchh
Confidence 7777 8899999999999875443
|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-14 Score=136.94 Aligned_cols=198 Identities=11% Similarity=0.127 Sum_probs=153.6
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+.++.+++..+ .|+.+++.||.+++..... ..|.+. .++++.+++.+.+.++.+.++|++.|+
T Consensus 127 ~~~~~~~~~t~--~~vK~~lpgP~t~~~~~~~------------~~y~~~---~e~~~dlA~a~~~ei~~l~~aG~~~IQ 189 (357)
T 3rpd_A 127 EDAKFLRKQTT--QPIKWALPGPMTMIDTLYD------------DHYKSR---EKLAWEFAKILNEEAKELEAAGVDIIQ 189 (357)
T ss_dssp HHHHHHHHHCS--SCBEEEEECHHHHHTSSEE------------SSSCCH---HHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhhcc--CCceEEeCCHHHHHHHhhh------------ccCCCH---HHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44566666553 4788999999998754332 113333 477888889999999999999999999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-C------------------Ccc-cHhHHhcCCCcEE
Q 015201 254 IFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-G------------------NGG-FLERMKGTGVDVI 313 (411)
Q Consensus 254 i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G------------------~~~-~l~~~~e~g~d~l 313 (411)
+.|+.-+. .++.|.++..+.++++++.++ ..+.+|+| | ... .++.+.++++|++
T Consensus 190 iDeP~l~~-~~~~~~~~~v~~~n~~~~~~~-----~~~~iHiC~G~~~~~n~d~~~t~~~~~g~y~~i~~~l~~~~~D~i 263 (357)
T 3rpd_A 190 FDEPAFNV-FFDEVNDWGIACLERAIEGLK-----CETAVHICYGYGIKANTDWKKTLGSEWRQYEEVFPKLQKSNIDII 263 (357)
T ss_dssp EECGGGGT-CHHHHHHTHHHHHHHHHTTCC-----SEEEEEECSCCSSHHHHHHHTTSCSCCCGGGGTHHHHHHSSCCEE
T ss_pred ecCccccc-cHHHHHHHHHHHHHHHHhCCC-----CceEEEEecCCccCCccccccccccccCcHHHHHHHHHhCCCCEE
Confidence 99975442 467888888888888887664 24678999 3 334 5788999999999
Q ss_pred EcCCCCCH--HHHHHHhCCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCc---HHHHHHHH
Q 015201 314 GLDWTVDM--ADGRKRLGNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTP---EEAVAHFF 387 (411)
Q Consensus 314 ~~d~~~di--~~~~~~~g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp---~Eni~a~~ 387 (411)
+++...+- .++.+.+.++.++.|.||.... ..++|+|.+.++++++..+....+++|+|++.+-++ .+++++|+
T Consensus 264 ~lE~~~~r~~~e~l~~~~~k~v~lGvvd~~s~~ve~~eev~~ri~~a~~~v~~~~l~lsPdCGl~~~~~~~a~~kL~~mv 343 (357)
T 3rpd_A 264 SLECHNSHVPMELLELIRGKKVMVGAIDVATDTIETAEEVADTLRKALKFVDADKLYPCTNCGMTPLSHQVTRGKLNALS 343 (357)
T ss_dssp EECCTTCCCCGGGGGGGTTSEEEEECSCTTCSSCCCHHHHHHHHHHHHTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHH
T ss_pred EEEecCCCCChHHHHhcCCCEEEeccccCcCCCCCCHHHHHHHHHHHHHhCCcccEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 99754321 2556667788899999999864 589999999999999988778999999999987666 57999999
Q ss_pred HHHHhcC
Q 015201 388 EVGKSMK 394 (411)
Q Consensus 388 ~a~~~yg 394 (411)
++++...
T Consensus 344 ~aa~~~r 350 (357)
T 3rpd_A 344 AGAEIVR 350 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-12 Score=132.26 Aligned_cols=201 Identities=16% Similarity=0.181 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
++.++.+++ +++ .|+.+.+.||+|++...... +....+++++.++....+.++.+.++|++.|
T Consensus 544 lde~~~Aks-l~~-~pvK~~LtGPvTlL~ls~~r---------------~d~~r~ell~dLA~ayreeI~~L~~AGa~~I 606 (766)
T 1t7l_A 544 LKEITYAQS-LTE-KPVKGMLTGPVTIMSWSYYR---------------EDIPEREIAYQIALAINEEVKDLEEAGIKIV 606 (766)
T ss_dssp HHHHHHHHH-TCS-SCBEEEEECHHHHHHTSEEC---------------SSSCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH-hcC-CCeEEEEeCHHHHHHHhhcc---------------CCCCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 455666655 444 45788899999998764420 1113467888999999999999999999999
Q ss_pred EEecCCCC-CCCH-----HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCC---CH
Q 015201 253 QIFDSWGG-QLPP-----HMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTV---DM 321 (411)
Q Consensus 253 ~i~D~~~~-~iSp-----~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~---di 321 (411)
++.|+.-. .+++ +.+.+++.+.+++. +.+.. +..+.+|+| |+.. .++.+.++++|++++|..- ++
T Consensus 607 QIDEPaL~~~L~~~~~d~~~~l~~a~~aln~a-~gv~~---~~~I~lH~C~G~~~di~~~L~~l~VD~IsLE~~Rs~~el 682 (766)
T 1t7l_A 607 QIDEPAFREKAPIKKSKWPEYFEWAINAFNLA-ANARP---ETQIHAHMCYSDFNEIIEYIHQLEFDVISIEASRSKGEI 682 (766)
T ss_dssp EEECTHHHHTSCSSGGGHHHHHHHHHHHHHHH-TCCCT---TSEEEEECCCSCCTTTHHHHTTSCCSEEEEECTTTTTGG
T ss_pred EEcCCcccccCCCcchhHHHHHHHHHHHHHHh-hcCCC---CceEEEEEecCchHHHHHHHHcCCCCEEEEecCCCchhH
Confidence 99997432 3333 34555555555444 43321 456889999 8776 6899999999999997432 23
Q ss_pred HHHHHHh-C-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcH---HHHHHHHHHHHhcC
Q 015201 322 ADGRKRL-G-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPE---EAVAHFFEVGKSMK 394 (411)
Q Consensus 322 ~~~~~~~-g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~---Eni~a~~~a~~~yg 394 (411)
.+..+.+ + ++....|.||.... ..++|++.+.++++.+..+...++++|+|++..-++. ++++.|++++++..
T Consensus 683 L~~l~~~p~~~k~L~lGVVD~rn~~ved~EeI~~rI~~a~~~Vg~erL~VsPdCGL~~~p~~e~~~kLk~mvaaAkevr 761 (766)
T 1t7l_A 683 ISAFENFKGWIKQIGVGVWDIHSPAVPSINEMREIVERVLRVLPKELIWINPDCGLKTRNWDEVIPSLRNMVALAKEMR 761 (766)
T ss_dssp GHHHHTSTTCCSEEEEECSCTTSCSCCCHHHHHHHHHHHTTTSCGGGEEEECSSCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCeEEEEEECCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333323 1 35788999999765 5999999999999988776567999999999876655 78999999988765
|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-11 Score=127.17 Aligned_cols=184 Identities=14% Similarity=0.105 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCH-H-HHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAP-H-VLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~P-e-~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
..++.++.+++. | +++...+.||+|++ +++ + ...+.+ + ..+++++.+++...++++.+.++|
T Consensus 136 ~~l~~~~~ak~~-g--~~~K~~l~GP~Tll--~l~----k-------~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG 199 (765)
T 1u1j_A 136 KAVNEYKEAKAL-G--VDTVPVLVGPVSYL--LLS----K-------AAKGVDKSFELLSLLPKILPIYKEVITELKAAG 199 (765)
T ss_dssp HHHHHHHHHHHT-T--CCCEEEEECHHHHH--HTC----E-------ECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHhc-C--CCceEEECCHHHHH--Hhh----h-------cccccCccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777777654 3 55677889999999 333 0 001112 2 246788888888899999999999
Q ss_pred CCEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCC-CcEEEcCCCC---C
Q 015201 249 AHCIQIFDSWG-GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTG-VDVIGLDWTV---D 320 (411)
Q Consensus 249 ~d~i~i~D~~~-~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g-~d~l~~d~~~---d 320 (411)
++.|++.|+.. ..++++. .+.+.+.++.+.+.+ ++.++.+|+| |+.. .++.+.++| +|++++|... +
T Consensus 200 ~~~VQiDEP~L~~~l~~~~-~~~~~~a~~~l~~~~----~~~~i~lhtc~G~~~~~~~~~l~~l~~vd~l~lD~v~~~~~ 274 (765)
T 1u1j_A 200 ATWIQLDEPVLVMDLEGQK-LQAFTGAYAELESTL----SGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKT 274 (765)
T ss_dssp CCEEEEECGGGGSCCCHHH-HHHHHHHHHHSTTTT----CSSEEEEECCSSCCCHHHHHHHTTCTTCCEEEEESSSCTTH
T ss_pred CCEEEEcCCccccCCCHHH-HHHHHHHHHHHHhhc----CCCeEEEEeCCCCcchHHHHHHHcCCCCcEEEEEecCCccc
Confidence 99999999754 4677754 666666665554332 1457899999 8876 479999999 9999997532 4
Q ss_pred HHHHHHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 321 MADGRKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 321 i~~~~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
+..+++.++ ++..+.|.||...+ ..+++++.+.++++.+..+....+++|+|++.
T Consensus 275 l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg~~~l~lspsCgL~ 331 (765)
T 1u1j_A 275 LDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLL 331 (765)
T ss_dssp HHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCCSSCEEEEESSCGG
T ss_pred HHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcCCCcEEEcCCCCcc
Confidence 777777676 56888999999765 69999999999999988765679999999986
|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.1e-11 Score=125.82 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
..++.++..++.+| +++.+.+.||+|++....+ ++ .++++++.+++...++++.+.++|++
T Consensus 136 ~~l~~~~eA~~~~g--~~vK~vl~GP~Tla~l~k~----------------~~-~~~dll~~L~~~y~~~l~~L~~~Ga~ 196 (755)
T 2nq5_A 136 RLLDLYLEAREVVG--DKAKPVITGPITYVALSTG----------------VE-DFTAAVKSLLPLYKQVFTELVKAGAS 196 (755)
T ss_dssp HHHHHHHHHHHHHG--GGEEEEEECHHHHHHTCBS----------------CS-CHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcC--CCcEEEEccHHHHHHHhcC----------------Cc-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555554 5678889999999974211 12 24588888999999999999999999
Q ss_pred EEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe-cCCcccHhHHhcCCCcEEEcCCCCC----HHHH
Q 015201 251 CIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI-NGNGGFLERMKGTGVDVIGLDWTVD----MADG 324 (411)
Q Consensus 251 ~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~-CG~~~~l~~~~e~g~d~l~~d~~~d----i~~~ 324 (411)
.|++.||... -++++ +++.+.+.++++...+. +.++++|+ ||+...++.+.++|+|++++|.... +..+
T Consensus 197 ~VQiDEP~L~~dl~~~-~~~~~~~ay~~l~~~~~----~~~v~lhtyfG~~~~~~~l~~l~vd~l~lD~v~~~~~~l~~l 271 (755)
T 2nq5_A 197 YIQVDEPIFVTDEGKD-YLQAAKAVYAYFAKEVP----DAKFIFQTYFEGLIDSQVLSQLPVDAFGLDFVYGLEENLEAI 271 (755)
T ss_dssp EEEEECGGGGSSGGGG-GHHHHHHHHHHHHHHST----TCEEEEECCSSCCTTHHHHTTSSCSEEEEESSSSHHHHHHHH
T ss_pred EEEEeCCcccCCCCHH-HHHHHHHHHHHHHhccc----CCcEEEEEeCCChHHHHHHHhCCCCEEEEEecCCChhhHHHH
Confidence 9999998653 45655 89999999998875441 24677787 7886677999999999999985332 3356
Q ss_pred HHHhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 325 RKRLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 325 ~~~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
++.++ ++...+|.||...+ ..+++++.+.++++++. ....+++|+|++
T Consensus 272 ~~~~~~~k~L~~GvVdgrniw~~d~e~v~~~l~~~~~~--~~~l~vsPsCsL 321 (755)
T 2nq5_A 272 KTGAFKGKEIFAGVIDGRNIWSSDFVKTSALLETIEEQ--SAALTIQPSCSL 321 (755)
T ss_dssp HTTTTTTSEEEEEEECTTSCBCCCHHHHHHHHHHHHHT--SSEEEEEESSCG
T ss_pred HHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHhh--cCCEEEcCCCCc
Confidence 66565 67889999999765 69999999999999986 446999999996
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=120.16 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=129.9
Q ss_pred HHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Q 015201 174 DSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQ 253 (411)
Q Consensus 174 eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~ 253 (411)
+..+.+++..+ .|+-+++.||.+++.+... +. +.+ -.++++-++..+.+.++.+.++|++.|+
T Consensus 572 ~~~~~~qs~t~--~pvK~~L~gP~ti~~~s~~----r~--------~~~---~ee~~~dlA~A~r~Ei~~L~~AG~r~IQ 634 (789)
T 3ppg_A 572 KESVYAQSITS--KPMKGMLTGPVTILRWSFP----RD--------DVS---GKIQALQLGLALRDEVNDLEGAGITVIQ 634 (789)
T ss_dssp HHHHHHHHTCS--SCBEEEEECHHHHHHTSBC----CS--------SSC---HHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhhcc--CCCceeccchHhHhhhhcc----cc--------CCC---HHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 44455555443 2678888999998865432 10 111 2577888889999999999999999999
Q ss_pred EecCCCC--C-----CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcccHhHHhcCCCcEEEcCC--CCCHHH
Q 015201 254 IFDSWGG--Q-----LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGGFLERMKGTGVDVIGLDW--TVDMAD 323 (411)
Q Consensus 254 i~D~~~~--~-----iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~~l~~~~e~g~d~l~~d~--~~di~~ 323 (411)
+-|+.-. + .+++.|.++....+++.++.+.. +..+.+|+| |+... +.+.++++|+++++. ..+.+.
T Consensus 635 iDEPal~e~l~~r~g~d~~~~l~~av~a~n~a~~g~p~---d~~I~tHiC~Gnf~~-~~I~~l~aD~islE~~~Rs~~e~ 710 (789)
T 3ppg_A 635 VDEPAIREGLPLRAGKERSDYLNWAAQSFRVATSGVEN---STQIHSHFCYSDLDP-NHIKALDADVVSIEFSKKDDPNY 710 (789)
T ss_dssp EECTTTGGGSCSSSSHHHHHHHHHHHHHHHHHHSSSCT---TSEEEEECC---CCH-HHHHHHCCSEEEEC---------
T ss_pred EcccchhhcccccccCCHHHHHHHHHHHHHHHHhcCCC---CcEEEEeccCCCCCh-hHHHhCCCCEEEEecCCCcchHH
Confidence 9987432 1 23445555555555555544432 345788999 87655 888899999999983 122222
Q ss_pred HHHHh-CCCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCc---HHHHHHHHHHHHhcC
Q 015201 324 GRKRL-GNDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTP---EEAVAHFFEVGKSMK 394 (411)
Q Consensus 324 ~~~~~-g~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp---~Eni~a~~~a~~~yg 394 (411)
++..- .++.+..|.||.... ..++|+|.+.+++.++..+....+++|+||+..-.+ .+++++|+++++...
T Consensus 711 L~~~~~~~k~V~lGVvds~sp~vEs~EeV~~rI~~a~~~v~~erL~lsPdCGl~t~~~~~a~akL~~mveaAk~lR 786 (789)
T 3ppg_A 711 IQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFR 786 (789)
T ss_dssp CGGGGGCCSEEEEC-------CCCCHHHHHHHHHHHTTTSCGGGEEECCSCC---CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEeeeecCCCCCCCCHHHHHHHHHHHHHhcCcccEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21111 246788899999865 589999999999999988778999999999976655 578889999988754
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0023 Score=68.34 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=117.6
Q ss_pred EEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHH
Q 015201 189 VLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMW 267 (411)
Q Consensus 189 v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f 267 (411)
+-..+.||+|.+..--. .+ .. -.-+| ..+++.+.....+.++.+.++|++.|++-+|.-. -++++ +
T Consensus 186 ~kpVl~GPvT~L~L~k~---~~--~~----~~~~~---~~lL~~Ll~~Y~~~l~~L~~~G~~wVQiDEP~Lv~dl~~~-~ 252 (789)
T 3ppg_A 186 TRPVILGPVSYLYLGKA---DK--DS----LDLEP---ISLLPKILPVYKELLQKLKEAGAEQVQIDEPVLVLDLPEA-V 252 (789)
T ss_dssp CEEEEECHHHHHHTCEE---CG--GG----TTCCG---GGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHH-H
T ss_pred CCceeecHHHHHHHhcc---cc--cc----ccCCH---HHHHHHHHHHHHHHHHHHHHcCCCEEEeeCCeeecCCCHH-H
Confidence 34456799998754210 00 00 01233 2356777777778888888999999999998643 35554 4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCE-EEEecCCcc-cHhHHhcCCCcEEEcCCCC---CHHHHHHHhCC-CeeEEccCCcC
Q 015201 268 EQWSEPYIREIVSLVRTKCPETPI-VLYINGNGG-FLERMKGTGVDVIGLDWTV---DMADGRKRLGN-DISVQGNVDPA 341 (411)
Q Consensus 268 ~ef~~Py~k~i~~~i~~~~~g~~~-~~H~CG~~~-~l~~~~e~g~d~l~~d~~~---di~~~~~~~g~-~~~l~G~vd~~ 341 (411)
.+-+..-|.+|.+ . +...+ +..-+|+.. .++.+.+++++++++|..- ++..+.+.++. +....|-||-.
T Consensus 253 ~~~~~~aY~~L~~----~-~~~kill~TYFg~~~~~l~~l~~lpV~gl~lDlv~~~~~l~~v~~~~~~~k~L~aGvVdGR 327 (789)
T 3ppg_A 253 QSKFKEAYDALVG----A-DVPELILTTYFGDVRPNLKAIENLPVAGFHFDFVRVPEQLDEVASILKDGQTLSAGVVDGR 327 (789)
T ss_dssp HTHHHHHHHHHCS----T-TSCEEEEECCSSCCGGGHHHHTTCCCSEEEEETTTCGGGHHHHHHTCCTTCEEEEEEECSS
T ss_pred HHHHHHHHHHHhh----C-CCCCEEEECCCCCHHHHHHHHHcCCCcEEEEEccCCcchHHHHHhhcCCCCeEEEEEecCC
Confidence 5555455554443 2 12233 335689886 7899999999999998633 57777776754 56778999987
Q ss_pred cc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCC
Q 015201 342 CL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGT 378 (411)
Q Consensus 342 ~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~t 378 (411)
.. ..+.+++.+-++++.+..+....+++|+|++ |.+.
T Consensus 328 NiWr~dl~~~l~~l~~l~~~lg~~~l~vspScSLlHvP~~l 368 (789)
T 3ppg_A 328 NIWKTDFAKASAVVQKAIEKVGKDKVVVATSSSLLHTPVDL 368 (789)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHCGGGEEEEESSCGGGSCSCG
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCccc
Confidence 54 6889999999999998876578999999996 5554
|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.18 Score=53.56 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcccHhH
Q 015201 227 RTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGGFLER 304 (411)
Q Consensus 227 ~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~~l~~ 304 (411)
..+++.+.....+.++.+.++|+..|++.+|.-. -+++ .+.+-+...|.++ . +.++++.+- |+...++.
T Consensus 203 ~~~l~~l~~~y~~~l~~l~~~g~~~vq~dep~l~~d~~~-~~~~~~~~~y~~l----~----~~~~~~~tyf~~~~~~~~ 273 (766)
T 1t7l_A 203 EKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEK-AHWDLILNVYREL----S----EFPLTVFTYYDSVSDYEA 273 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEECGGGGSCCBH-HHHHHHHHHHHTT----T----TSCEEEECCSSCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEecCCeeecCCCH-HHHHHHHHHHHHh----c----CCcEEEECCcCCHHHHHH
Confidence 3778888888888889999999999999998654 3444 4666666666666 1 345666554 55557899
Q ss_pred HhcCCCcEEEcCCCC---CHHHHHH-HhC-CCeeEEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 305 MKGTGVDVIGLDWTV---DMADGRK-RLG-NDISVQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~---di~~~~~-~~g-~~~~l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
+.+++++++++|..- ++..+.+ .++ +++...|-||-... ..+.++..+.++++.+ .+++|+|++
T Consensus 274 ~~~l~v~~~~~d~v~~~~~~~~~~~~~~~~~~~l~~Gvvdgrniw~~d~~~~~~~~~~~~~------~~~~~s~sl 343 (766)
T 1t7l_A 274 CVSLPVKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDLRKVASLVEKLGA------SAISNSCPL 343 (766)
T ss_dssp HHTSSCSEEEEECSSCSHHHHHHHHHCCCTTSEEEEEEECSSCCBCCCHHHHHHHHHHHTC------SEEEESSCG
T ss_pred HHcCCCcEEEEEecCCHHHHHHHHhccCCCCceEEEEEecCcchhhcCHHHHHHHHHHhhe------EEEECCcCC
Confidence 999999999987532 3555655 354 66777788998755 5677766555543322 999999995
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.11 Score=49.78 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 223 PHVLRTLLSHLTQAIADYIIYQV-ESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 223 Pe~v~~ll~~~~d~~~~~~~~~~-e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
|+.+++.++...+...++++.++ +.|||.|-+.-.+ +.-+|++.+.+. ++.+.+.. ++|+.+--||
T Consensus 68 ~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~--------V~~v~~~~-~vPlsIDg~~ 138 (323)
T 4djd_D 68 PDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVAT--------VKEVLQAV-GVPLVVVGCG 138 (323)
T ss_dssp CHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHH--------HHHHHHHC-CSCEEEECCS
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHH--------HHHHHhhC-CceEEEECCC
Confidence 55555555554455778888898 8999999986322 237899886664 33443333 7899999999
Q ss_pred Ccc-c---HhHHhcCCCc---EE-EcCCC--CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-CC
Q 015201 298 NGG-F---LERMKGTGVD---VI-GLDWT--VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-RG 365 (411)
Q Consensus 298 ~~~-~---l~~~~e~g~d---~l-~~d~~--~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~g 365 (411)
+.+ . ++.-.+.|.+ .+ ++... -.+..+.+++|-.+++|...| .+ +.++..+.+...| + ..
T Consensus 139 ~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d-------~~-~~~~l~~~a~~~GI~~e~ 210 (323)
T 4djd_D 139 DVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSPLD-------IN-ICKQLNILINEMNLPLDH 210 (323)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECSSC-------HH-HHHHHHHHHHTTTCCGGG
T ss_pred CCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEccch-------HH-HHHHHHHHHHHcCCCHHH
Confidence 975 2 4555555643 33 34322 246677788998788876332 22 3333333444444 4 68
Q ss_pred eEEeCCCCCCCCCcHHHHHHHHHHHH
Q 015201 366 HILNLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 366 fIls~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
+|+-||.+ |.+...|.-...++..+
T Consensus 211 IIlDPg~g-~fgk~~e~~l~~l~~ir 235 (323)
T 4djd_D 211 IVIDPSIG-GLGYGIEYSFSIMERIR 235 (323)
T ss_dssp EEEECCCC-CTTTTHHHHHHHHHHHH
T ss_pred EEEeCCCc-cccCCHHHHHHHHHHHH
Confidence 99999987 33444444444444444
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.28 E-value=0.66 Score=43.82 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=-+-+.|..+.+.+.+ ++|+.+.+. +...++.-.+.|.
T Consensus 63 ~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-----~vpiSIDT~-~~~V~~aAl~aGa 136 (297)
T 1tx2_A 63 DAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-----KLPISIDTY-KAEVAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-----CSCEEEECS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CceEEEeCC-CHHHHHHHHHcCC
Confidence 455667788999999999888533 247888776666788877776543 578777654 2224566566699
Q ss_pred cEEE-cCC---CCCHHHHHHHhCCCeeEEccC-CcCccCCCHHHHHHHHHHHHHHhC----C-CCeEEeCCCCCCCCCcH
Q 015201 311 DVIG-LDW---TVDMADGRKRLGNDISVQGNV-DPACLFSPLPALTDEIQRVVKCAG----S-RGHILNLGHGVLVGTPE 380 (411)
Q Consensus 311 d~l~-~d~---~~di~~~~~~~g~~~~l~G~v-d~~~L~gt~eeV~~ev~~~i~~~~----~-~gfIls~gc~i~~~tp~ 380 (411)
++++ +.. ...+.++.+++|-.+++|-.- .|.+ ....+++.+..++.++.+. + ...|+-||.+. ..+..
T Consensus 137 ~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y-~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gf-gk~~~ 214 (297)
T 1tx2_A 137 HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNY-RNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGF-AKTPE 214 (297)
T ss_dssp CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCC-SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-SCCHH
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCc-chHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCc-CCCHH
Confidence 9995 322 234666677788777776531 1221 1235667777777766543 2 47999999887 34445
Q ss_pred HHHHHHHHHHHhc
Q 015201 381 EAVAHFFEVGKSM 393 (411)
Q Consensus 381 Eni~a~~~a~~~y 393 (411)
.|+ .+++..+++
T Consensus 215 ~n~-~ll~~l~~l 226 (297)
T 1tx2_A 215 QNL-EAMRNLEQL 226 (297)
T ss_dssp HHH-HHHHTGGGG
T ss_pred HHH-HHHHHHHHH
Confidence 555 444444443
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=94.51 E-value=3.1 Score=38.86 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++-.. +..+|++.=.+-+.|..+.+.+.. ++|+.+++-. ..-++.-.+.|+
T Consensus 38 ~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-----~~piSIDT~~-~~va~aAl~aGa 111 (282)
T 1aj0_A 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-----EVWISVDTSK-PEVIRESAKVGA 111 (282)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-----CCEEEEECCC-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-----CCeEEEeCCC-HHHHHHHHHcCC
Confidence 455667788999999999888632 237888776666778777776543 5676665422 224566666799
Q ss_pred cEEE-cC--CCCCHHHHHHHhCCCeeEEccC-CcCcc-----CCC-HHHHHHHHHHHHHHh---C-C-CCeEEeCCCCCC
Q 015201 311 DVIG-LD--WTVDMADGRKRLGNDISVQGNV-DPACL-----FSP-LPALTDEIQRVVKCA---G-S-RGHILNLGHGVL 375 (411)
Q Consensus 311 d~l~-~d--~~~di~~~~~~~g~~~~l~G~v-d~~~L-----~gt-~eeV~~ev~~~i~~~---~-~-~gfIls~gc~i~ 375 (411)
++++ +. ....+..+.+++|-.+++|-.- .|... +.+ .+|+.+..++.++.+ | + ..+|+-||.+.
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf- 190 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF- 190 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS-
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCc-
Confidence 9995 33 2346777778888878886431 12221 112 255666666666554 2 2 47999999887
Q ss_pred CCCcHHHHHHHHHHHHhc
Q 015201 376 VGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 376 ~~tp~Eni~a~~~a~~~y 393 (411)
..+..+|+. +++..+++
T Consensus 191 ~k~~~~n~~-ll~~l~~~ 207 (282)
T 1aj0_A 191 GKNLSHNYS-LLARLAEF 207 (282)
T ss_dssp SCCHHHHHH-HHHTGGGG
T ss_pred ccCHHHHHH-HHHHHHHH
Confidence 334455544 44444443
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.16 E-value=1.1 Score=41.69 Aligned_cols=147 Identities=16% Similarity=0.063 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcC--CCcE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGT--GVDV 312 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~--g~d~ 312 (411)
+..++.++.+++.|||.|-+.-.+ +++.=.+-+.|..+.+.+.. ++|+.+-++ +...++.-.+. |.++
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s----~~~eE~~rv~~vi~~l~~~~-----~~pisIDT~-~~~v~~aal~a~~Ga~i 103 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGP----TADDPVRVMEWLVKTIQEVV-----DLPCCLDST-NPDAIEAGLKVHRGHAM 103 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCS----CSSCHHHHHHHHHHHHHHHC-----CCCEEEECS-CHHHHHHHHHHCCSCCE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCc----CchhHHHHHHHHHHHHHHhC-----CCeEEEeCC-CHHHHHHHHHhCCCCCE
Confidence 456677788999999999876544 22222345556666555432 577665443 22245665665 9999
Q ss_pred EE-cCCCCC----HHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC----C-CCeEEeCCCCCCCCCcHHH
Q 015201 313 IG-LDWTVD----MADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG----S-RGHILNLGHGVLVGTPEEA 382 (411)
Q Consensus 313 l~-~d~~~d----i~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~----~-~gfIls~gc~i~~~tp~En 382 (411)
++ +....| +..+.+++|-.+++|- .|..-.-.|.+++.+..++.++.+. + ..+|+-||.+....+...|
T Consensus 104 INdvs~~~d~~~~~~~~~a~~~~~vv~m~-~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~ 182 (271)
T 2yci_X 104 INSTSADQWKMDIFFPMAKKYEAAIIGLT-MNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHA 182 (271)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEEES-CBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHH
T ss_pred EEECCCCccccHHHHHHHHHcCCCEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHH
Confidence 96 543323 5556677887677664 2322222467888888888777653 2 4699999988643344444
Q ss_pred HHHHHHHHHhc
Q 015201 383 VAHFFEVGKSM 393 (411)
Q Consensus 383 i~a~~~a~~~y 393 (411)
+. +++..+++
T Consensus 183 ~~-~l~~l~~~ 192 (271)
T 2yci_X 183 VE-VLETIRQI 192 (271)
T ss_dssp HH-HHHHHHHH
T ss_pred HH-HHHHHHHH
Confidence 33 44444444
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.70 E-value=3 Score=39.63 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC---CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG---GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~---~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++-.+. ..+|++.=.+-+.|..+.+.+.+ +++|+. ++-... .++.-.+.|+
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~----~~vpIS--IDT~~~~VaeaAl~aGa 138 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY----PDQLIS--VDTWRAQVAKAACAAGA 138 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHS----TTCEEE--EECSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC----CCCeEE--EeCCCHHHHHHHHHhCC
Confidence 4456677889999999998874221 46887776677888877776543 255543 333333 4666667799
Q ss_pred cEEE-cC--CCCCHHHHHHHhCCCeeEEcc--CCcCccCCC------HHHHHHH----HHHHHHHh---C-C-CCeEEeC
Q 015201 311 DVIG-LD--WTVDMADGRKRLGNDISVQGN--VDPACLFSP------LPALTDE----IQRVVKCA---G-S-RGHILNL 370 (411)
Q Consensus 311 d~l~-~d--~~~di~~~~~~~g~~~~l~G~--vd~~~L~gt------~eeV~~e----v~~~i~~~---~-~-~gfIls~ 370 (411)
+++| +. ....+.++.+++|-.+++|-. ..|..+... +++|.++ .++.++.+ | + ..+|+-|
T Consensus 139 ~iINDVsg~~d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDP 218 (318)
T 2vp8_A 139 DLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDP 218 (318)
T ss_dssp CEEEETTSSSSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEET
T ss_pred CEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcC
Confidence 9995 32 233677777888877888652 313332211 1344433 34444433 2 2 4799999
Q ss_pred CCCCCCCCcHHHHHHH
Q 015201 371 GHGVLVGTPEEAVAHF 386 (411)
Q Consensus 371 gc~i~~~tp~Eni~a~ 386 (411)
|.+... +..+|+..+
T Consensus 219 G~GF~K-t~~~nl~ll 233 (318)
T 2vp8_A 219 AHDFGK-NTFHGLLLL 233 (318)
T ss_dssp TTTCCT-TSHHHHHHH
T ss_pred CCCccc-CHHHHHHHH
Confidence 998754 556666554
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=93.67 E-value=2.5 Score=38.89 Aligned_cols=139 Identities=11% Similarity=0.082 Sum_probs=88.0
Q ss_pred HHHHHHHhCCCEE--EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe--------cCCc-ccH----hH
Q 015201 240 YIIYQVESGAHCI--QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI--------NGNG-GFL----ER 304 (411)
Q Consensus 240 ~~~~~~e~G~d~i--~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~--------CG~~-~~l----~~ 304 (411)
.++..+++|++.| .+.+... +. +-.....+++.+.+++. |.++++.. +|.. ..+ ..
T Consensus 104 ~v~~a~~~Ga~~v~~~l~~~~~---~~----~~~~~~~~~v~~~~~~~--g~~viv~~~~~G~~l~~~~~~~~~~~~a~~ 174 (273)
T 2qjg_A 104 TVEEAIRMGADAVSIHVNVGSD---ED----WEAYRDLGMIAETCEYW--GMPLIAMMYPRGKHIQNERDPELVAHAARL 174 (273)
T ss_dssp CHHHHHHTTCSEEEEEEEETST---TH----HHHHHHHHHHHHHHHHH--TCCEEEEEEECSTTCSCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEEecCCC---CH----HHHHHHHHHHHHHHHHc--CCCEEEEeCCCCcccCCCCCHhHHHHHHHH
Confidence 3456678999998 4433321 22 22335678888888877 67877654 1111 122 44
Q ss_pred HhcCCCcEEEcCCCCCHHHHH---HHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH
Q 015201 305 MKGTGVDVIGLDWTVDMADGR---KRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE 381 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~di~~~~---~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E 381 (411)
..+.|+|.+.+.+..|+..++ +..+-.+...||+.+ .+.|++.+.++++++.+. .|+.++++- +...-|.+
T Consensus 175 a~~~Gad~i~~~~~~~~~~l~~i~~~~~ipvva~GGi~~----~~~~~~~~~~~~~~~~Ga-~gv~vg~~i-~~~~~~~~ 248 (273)
T 2qjg_A 175 GAELGADIVKTSYTGDIDSFRDVVKGCPAPVVVAGGPKT----NTDEEFLQMIKDAMEAGA-AGVAVGRNI-FQHDDVVG 248 (273)
T ss_dssp HHHTTCSEEEECCCSSHHHHHHHHHHCSSCEEEECCSCC----SSHHHHHHHHHHHHHHTC-SEEECCHHH-HTSSSHHH
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHHHcCC-cEEEeeHHh-hCCCCHHH
Confidence 557899998777656665544 444556777898886 368888888888887544 355554431 12234677
Q ss_pred HHHHHHHHHHhc
Q 015201 382 AVAHFFEVGKSM 393 (411)
Q Consensus 382 ni~a~~~a~~~y 393 (411)
.++++.+.+++.
T Consensus 249 ~~~~l~~~~~~~ 260 (273)
T 2qjg_A 249 ITRAVCKIVHEN 260 (273)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888888887763
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.28 Score=46.51 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++++.++|++.|-++- +.+|+....+. -..+++..+.+. ++.++..|. .+...++...+.|++.+
T Consensus 29 ~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~~~~~--d~~~~~~~~~~~-~~~~~~~l~-~~~~~i~~a~~aG~~~v 100 (302)
T 2ftp_A 29 VADKIRLVDDLSAAGLDYIEVGS----FVSPKWVPQMA--GSAEVFAGIRQR-PGVTYAALA-PNLKGFEAALESGVKEV 100 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEE----CSCTTTCGGGT--THHHHHHHSCCC-TTSEEEEEC-CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCcCEEEECC----CcCcccccccc--CHHHHHHHhhhc-CCCEEEEEe-CCHHHHHHHHhCCcCEE
Confidence 45566788888999999986642 23332111110 011233444433 367788887 34346888889999998
Q ss_pred Ec-CCCCCH--------------------HHHHHHhCCCeeEEccCCcC----c-cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GL-DWTVDM--------------------ADGRKRLGNDISVQGNVDPA----C-LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~-d~~~di--------------------~~~~~~~g~~~~l~G~vd~~----~-L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+ +...|. .+..+..|. .+.|++-.. . -.-++|++.+.++++.+.+ ...+.
T Consensus 101 ~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~--~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G-~d~i~ 177 (302)
T 2ftp_A 101 AVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQV--RVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG-CYEVS 177 (302)
T ss_dssp EEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT-CSEEE
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC-CCEEE
Confidence 75 332221 122233453 344433221 1 1357888888887777653 34566
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++..+++ ..|+.+..+++.+++.
T Consensus 178 l~DT~G~---~~P~~~~~lv~~l~~~ 200 (302)
T 2ftp_A 178 LGDTIGV---GTAGATRRLIEAVASE 200 (302)
T ss_dssp EEESSSC---CCHHHHHHHHHHHTTT
T ss_pred EeCCCCC---cCHHHHHHHHHHHHHh
Confidence 6655555 3466677777777653
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=6.2 Score=36.52 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC----CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDS----WGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~----~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++.- -+..+|++.=.+-+.|.++.+. +. +++ +-++-... ..+.-.+.|
T Consensus 30 ~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~----~~--~v~--iSIDT~~~~Va~~al~aG 101 (270)
T 4hb7_A 30 ETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIV----GF--DVK--ISVDTFRSEVAEACLKLG 101 (270)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHT----TS--SSE--EEEECSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhh----cC--CCe--EEEECCCHHHHHHHHHhc
Confidence 44566778889999999988752 2347998876666778777663 22 554 33444443 357777899
Q ss_pred CcEEE-cC---CCCCHHHHHHHhCCCeeEEccC-CcCccCCCHHHHHHHHHHHHHHh---C-C-CCeEEeCCCCCCCCCc
Q 015201 310 VDVIG-LD---WTVDMADGRKRLGNDISVQGNV-DPACLFSPLPALTDEIQRVVKCA---G-S-RGHILNLGHGVLVGTP 379 (411)
Q Consensus 310 ~d~l~-~d---~~~di~~~~~~~g~~~~l~G~v-d~~~L~gt~eeV~~ev~~~i~~~---~-~-~gfIls~gc~i~~~tp 379 (411)
++++| +. ...++.++...++-.+++|=.- +|.. ..-.+||.++..+.++.+ | + ...|+-||-++. .+.
T Consensus 102 a~iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~-~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFg-Kt~ 179 (270)
T 4hb7_A 102 VDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRD-EPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFA-KTR 179 (270)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCS-SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCH
T ss_pred cceeccccccccchhHHHHHHHcCCCeEEeccccCCcc-ccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcc-ccc
Confidence 99997 42 2235777778888778887321 1221 122456666665555443 2 3 579999998875 567
Q ss_pred HHHHHHH--HHHHHhcCCC
Q 015201 380 EEAVAHF--FEVGKSMKYD 396 (411)
Q Consensus 380 ~Eni~a~--~~a~~~yg~~ 396 (411)
.+|+.-+ ++..+.+|.+
T Consensus 180 ~~N~~ll~~l~~~~~lg~P 198 (270)
T 4hb7_A 180 NEEAEVMARLDELVATEYP 198 (270)
T ss_dssp HHHHHHHTCHHHHHTTCSC
T ss_pred ccHHHHHhhHHHHhcCCCC
Confidence 7888766 3455666643
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=6.8 Score=36.46 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=-+-+.|..+.+.+ . ++|+.+++- +...++.-.+.|+
T Consensus 29 ~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~----~--~~piSIDT~-~~~va~aAl~aGa 101 (280)
T 1eye_A 29 DDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAA----Q--GITVSIDTM-RADVARAALQNGA 101 (280)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHH----T--TCCEEEECS-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhc----C--CCEEEEeCC-CHHHHHHHHHcCC
Confidence 445567788999999999887532 1256666555556677766654 2 467766542 1124566667799
Q ss_pred cEEE-cCC---CCCHHHHHHHhCCCeeEEccC-CcCccC------CC-HHHHHHHHHHHHHHh---C-C-CCeEEeCCCC
Q 015201 311 DVIG-LDW---TVDMADGRKRLGNDISVQGNV-DPACLF------SP-LPALTDEIQRVVKCA---G-S-RGHILNLGHG 373 (411)
Q Consensus 311 d~l~-~d~---~~di~~~~~~~g~~~~l~G~v-d~~~L~------gt-~eeV~~ev~~~i~~~---~-~-~gfIls~gc~ 373 (411)
++++ +.. ...+..+.+++|-.+++|-.- .|.... .+ .++|.++.++.++.+ | + ..+|+-||-+
T Consensus 102 ~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~G 181 (280)
T 1eye_A 102 QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLG 181 (280)
T ss_dssp CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred CEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCC
Confidence 9995 321 335777778888888886431 122221 11 344555555555543 2 2 4799999988
Q ss_pred CCCCCcHHHHHHHH--HHHHhcCC
Q 015201 374 VLVGTPEEAVAHFF--EVGKSMKY 395 (411)
Q Consensus 374 i~~~tp~Eni~a~~--~a~~~yg~ 395 (411)
+.. +..+|+..+. +..++.|.
T Consensus 182 f~k-~~~~n~~ll~~l~~~~~~g~ 204 (280)
T 1eye_A 182 FAK-TAQHNWAILHALPELVATGI 204 (280)
T ss_dssp SSC-CHHHHHHHHHTHHHHHTTSS
T ss_pred ccc-CHHHHHHHHHHHHHhhcCCC
Confidence 653 5556665543 33444443
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=92.40 E-value=1 Score=42.49 Aligned_cols=138 Identities=11% Similarity=0.039 Sum_probs=89.9
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecC------CcccH----hHHhcCCC
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYING------NGGFL----ERMKGTGV 310 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG------~~~~l----~~~~e~g~ 310 (411)
++..++.|||.|.+.-.+++ + . +.....-..++.+.++++ |.|+++-.+- +...+ ..-.++|+
T Consensus 131 ve~Av~~GAdaV~~~i~~Gs---~-~-~~~~l~~i~~v~~~a~~~--GlpvIie~~~G~~~~~d~e~i~~aariA~elGA 203 (295)
T 3glc_A 131 MDDAVRLNSCAVAAQVYIGS---E-Y-EHQSIKNIIQLVDAGMKV--GMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGA 203 (295)
T ss_dssp HHHHHHTTCSEEEEEECTTS---T-T-HHHHHHHHHHHHHHHHTT--TCCEEEEECC----CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEEEEECCC---C-c-HHHHHHHHHHHHHHHHHc--CCEEEEECCCCCccCCCHHHHHHHHHHHHHhCC
Confidence 44556899999987666552 2 2 233555678899999987 6888875532 11112 22337899
Q ss_pred cEEEcCCC-CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHH
Q 015201 311 DVIGLDWT-VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEV 389 (411)
Q Consensus 311 d~l~~d~~-~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a 389 (411)
|.+-..+. -++.++.+..+-.+.+.||+.. +.++..+.+++.++.+ ..|.+++..= +..+-|.+-++++.+.
T Consensus 204 D~VKt~~t~e~~~~vv~~~~vPVv~~GG~~~-----~~~~~l~~v~~ai~aG-A~Gv~vGRnI-~q~~dp~~~~~al~~i 276 (295)
T 3glc_A 204 QIIKTYYVEKGFERIVAGCPVPIVIAGGKKL-----PEREALEMCWQAIDQG-ASGVDMGRNI-FQSDHPVAMMKAVQAV 276 (295)
T ss_dssp SEEEEECCTTTHHHHHHTCSSCEEEECCSCC-----CHHHHHHHHHHHHHTT-CSEEEESHHH-HTSSSHHHHHHHHHHH
T ss_pred CEEEeCCCHHHHHHHHHhCCCcEEEEECCCC-----CHHHHHHHHHHHHHhC-CeEEEeHHHH-hcCcCHHHHHHHHHHH
Confidence 99865443 3677777765545677787664 5788999999999863 3466665431 2334566677777777
Q ss_pred HHh
Q 015201 390 GKS 392 (411)
Q Consensus 390 ~~~ 392 (411)
+++
T Consensus 277 vh~ 279 (295)
T 3glc_A 277 VHH 279 (295)
T ss_dssp HHH
T ss_pred HhC
Confidence 765
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=92.27 E-value=1.3 Score=41.03 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC----------cccH----hHH
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN----------GGFL----ERM 305 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~----------~~~l----~~~ 305 (411)
.++..++.|++.|.+...+++ ..+ +....-.+++.+.++++ ++|+++. |.- ...+ ...
T Consensus 97 ~ve~Ai~~Ga~~v~~~~nig~----~~~-~~~~~~~~~v~~~~~~~--~~~vIi~-~~~~G~~~~~~~s~~~i~~a~~~a 168 (263)
T 1w8s_A 97 SVEEAVSLGASAVGYTIYPGS----GFE-WKMFEELARIKRDAVKF--DLPLVVE-SFPRGGKVVNETAPEIVAYAARIA 168 (263)
T ss_dssp CHHHHHHTTCSEEEEEECTTS----TTH-HHHHHHHHHHHHHHHHH--TCCEEEE-ECCCSTTCCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCC----cCH-HHHHHHHHHHHHHHHHc--CCeEEEE-eeCCCCccccCCCHHHHHHHHHHH
Confidence 345667889999998776663 222 44667788888888887 6887765 422 1222 234
Q ss_pred hcCCCcEEEcCCCC---CHHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH
Q 015201 306 KGTGVDVIGLDWTV---DMADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE 381 (411)
Q Consensus 306 ~e~g~d~l~~d~~~---di~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E 381 (411)
.+.|+|.+-..+.. ++.++++..+. .+...||+.. +|.++..+.++..++.+.. |...+.. -+...-|.+
T Consensus 169 ~~~GAD~vkt~~~~~~e~~~~~~~~~~~~pV~asGGi~~----~~~~~~l~~i~~~~~aGA~-Gvsvgra-I~~~~dp~~ 242 (263)
T 1w8s_A 169 LELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKT----KTEEDFLKQVEGVLEAGAL-GIAVGRN-VWQRRDALK 242 (263)
T ss_dssp HHHTCSEEEEECCSSHHHHHHHHHHTTTSCEEEECCSCC----SSHHHHHHHHHHHHHTTCC-EEEESHH-HHTSTTHHH
T ss_pred HHcCCCEEEEcCCCCHHHHHHHHHhCCCCeEEEEeCCCC----CCHHHHHHHHHHHHHcCCe-EEEEehh-hcCCcCHHH
Confidence 56899998655432 35566666666 6888999864 5799999999999986544 5544433 123334666
Q ss_pred HHHHHHHHHHh
Q 015201 382 AVAHFFEVGKS 392 (411)
Q Consensus 382 ni~a~~~a~~~ 392 (411)
.++++.+.+++
T Consensus 243 ~~~~l~~~v~~ 253 (263)
T 1w8s_A 243 FARALAELVYG 253 (263)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 77777776654
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.35 Score=46.00 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++++.++|++.|-++- +.||+....+.-+ .+++..+.+. ++..+..+. -+...++...+.|++.+
T Consensus 27 ~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~p~~~d~--~~~~~~~~~~-~~~~~~~l~-~~~~~i~~a~~~g~~~v 98 (307)
T 1ydo_A 27 TEDKITWINQLSRTGLSYIEITS----FVHPKWIPALRDA--IDVAKGIDRE-KGVTYAALV-PNQRGLENALEGGINEA 98 (307)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEE----CSCTTTCGGGTTH--HHHHHHSCCC-TTCEEEEEC-CSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECC----CcCcccccccCCH--HHHHHHhhhc-CCCeEEEEe-CCHHhHHHHHhCCcCEE
Confidence 45567788889999999986642 3333211111000 1234444433 355555444 33335788888999998
Q ss_pred EcC-CC----------CCHH----------HHHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLD-WT----------VDMA----------DGRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d-~~----------~di~----------~~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+- .. .+.+ +..+..|. .+.|++.... -.-+++.+.+.++++.+.+ ...+.
T Consensus 99 ~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~--~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~ 175 (307)
T 1ydo_A 99 CVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANL--TTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG-ISELS 175 (307)
T ss_dssp EEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTC--EEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT-CSCEE
T ss_pred EEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--EEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC-CCEEE
Confidence 642 11 1211 12233453 3444433321 1257888888888877764 33555
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
|.- ++. -..|+.+..+++++++.
T Consensus 176 l~D--T~G-~~~P~~v~~lv~~l~~~ 198 (307)
T 1ydo_A 176 LGD--TIG-AANPAQVETVLEALLAR 198 (307)
T ss_dssp EEC--SSC-CCCHHHHHHHHHHHHTT
T ss_pred EcC--CCC-CcCHHHHHHHHHHHHHh
Confidence 543 332 24577788888888764
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=91.52 E-value=2.2 Score=40.06 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc----HhHHhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF----LERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~----l~~~~e~g 309 (411)
++..+++++.+.++|++.|-++-+ ..+|+.|+. .+++.+.. ++..+..+.-+.... ++.+.+.|
T Consensus 26 ~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~~d~e~-----v~~i~~~~----~~~~i~~l~~~~~~di~~a~~~~~~ag 93 (293)
T 3ewb_X 26 VKEKIQIALQLEKLGIDVIEAGFP---ISSPGDFEC-----VKAIAKAI----KHCSVTGLARCVEGDIDRAEEALKDAV 93 (293)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECG---GGCHHHHHH-----HHHHHHHC----CSSEEEEEEESSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCCccHHHH-----HHHHHHhc----CCCEEEEEecCCHHHHHHHHHHHhhcC
Confidence 455667888899999999866432 247776654 33444333 255555555443222 34455578
Q ss_pred CcEEEcC-C----------CCCHHHH----------HHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLD-W----------TVDMADG----------RKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d-~----------~~di~~~----------~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+++- . ..+.++. .+..|.++.+ +--|. -.-+++.+.+.++++.+.+ -..+
T Consensus 94 ~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~-~~~d~--~~~~~~~~~~~~~~~~~~G---~~~i 167 (293)
T 3ewb_X 94 SPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQF-SPEDA--TRSDRAFLIEAVQTAIDAG---ATVI 167 (293)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEE-EEETG--GGSCHHHHHHHHHHHHHTT---CCEE
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEE-EeccC--CCCCHHHHHHHHHHHHHcC---CCEE
Confidence 8887531 1 2233222 2223443332 11111 1357888888877776653 2345
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+...++.. ..|+.+..+++++++.
T Consensus 168 ~l~DT~G~-~~P~~v~~lv~~l~~~ 191 (293)
T 3ewb_X 168 NIPDTVGY-TNPTEFGQLFQDLRRE 191 (293)
T ss_dssp EEECSSSC-CCHHHHHHHHHHHHHH
T ss_pred EecCCCCC-CCHHHHHHHHHHHHHh
Confidence 54444443 4466688888877764
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.36 E-value=7.6 Score=36.21 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 56 ~~v~~~~~~~~~gr~pviaGvg~~-----------~-------------------------t~~ai~la~~A~~~Gadav 99 (292)
T 2vc6_A 56 EQVVEITIKTANGRVPVIAGAGSN-----------S-------------------------TAEAIAFVRHAQNAGADGV 99 (292)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCS-----------S-------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCc-----------c-------------------------HHHHHHHHHHHHHcCCCEE
Confidence 344555666677788988766441 0 1233567777888999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhc-CCCcEEEc-CCCCC---
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKG-TGVDVIGL-DWTVD--- 320 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e-~g~d~l~~-d~~~d--- 320 (411)
.+.-++-.-.|+ +-+.-|++.+.+.. ++|++++.. |.. . .+..+.+ .+ ++..+ +...|
T Consensus 100 lv~~P~y~~~s~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nIvgiK~s~gd~~~ 169 (292)
T 2vc6_A 100 LIVSPYYNKPTQ----EGIYQHFKAIDAAS-----TIPIIVYNIPGRSAIEIHVETLARIFEDCP-NVKGVXDATGNLLR 169 (292)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECSCCTHH
T ss_pred EEcCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCccccCcCCCHHHHHHHHhhCC-CEEEEecCCCCHHH
Confidence 887775443455 44566778887765 578888774 432 2 2444554 53 55555 33335
Q ss_pred HHHHHHHhCCCeeEEccCCc
Q 015201 321 MADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 321 i~~~~~~~g~~~~l~G~vd~ 340 (411)
+.++++..+++..++.|-|.
T Consensus 170 ~~~~~~~~~~~f~v~~G~d~ 189 (292)
T 2vc6_A 170 PSLERMACGEDFNLLTGEDG 189 (292)
T ss_dssp HHHHHHHSCTTSEEEESCGG
T ss_pred HHHHHHHcCCCEEEEECchH
Confidence 44555556656666555554
|
| >1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=2.3 Score=41.75 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--CEEEEec-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----
Q 015201 228 TLLSHLTQAIADYIIYQVESGA--HCIQIFD-SWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---- 300 (411)
Q Consensus 228 ~ll~~~~d~~~~~~~~~~e~G~--d~i~i~D-~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---- 300 (411)
++.+.+.++..+.++.+.+.|+ +.+++.. ...++.+...|++ ..-+++..++.+|+..|+.++++|.|....
T Consensus 134 ~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~-la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~~~~ 212 (399)
T 1ur4_A 134 DKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAK-MSQLFNAGSQAVRETDSNILVALHFTNPETSGRY 212 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHH-HHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHH-HHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHH
Confidence 4444555666666677777775 5565654 3334554444443 346778888899998888889999985432
Q ss_pred --cHhHHhcCC--CcEEEcCCCC----C-------HHHHHHHhCCCeeEE--ccCCcC---------------cc--CCC
Q 015201 301 --FLERMKGTG--VDVIGLDWTV----D-------MADGRKRLGNDISVQ--GNVDPA---------------CL--FSP 346 (411)
Q Consensus 301 --~l~~~~e~g--~d~l~~d~~~----d-------i~~~~~~~g~~~~l~--G~vd~~---------------~L--~gt 346 (411)
+++.+...| +|+|++.... . +..+.++||+.+.|. |--... .. --|
T Consensus 213 ~~~~d~l~~~g~d~DvIG~syYp~W~~~l~~l~~~l~~l~~rygKpV~v~EtG~~~~~~~~d~~~n~~~~~~~~~~~~~s 292 (399)
T 1ur4_A 213 AWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTSVADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVT 292 (399)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHHHHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSS
T ss_pred HHHHHHHHHcCCCcCeEeEecCccchhhHHHHHHHHHHHHHHhCCcEEEEEecCCccCCCCCCcccccccccccCCCCCC
Confidence 246556544 7788654221 2 566777888776663 322110 00 136
Q ss_pred HHHHHHHHHHHHHHhCC-----CCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 347 LPALTDEIQRVVKCAGS-----RGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~~~-----~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
++.=.+..+++++.+.. .|+..=--+-+|.+ +.+|...=.+++.++|.
T Consensus 293 ~~gQa~~l~~l~~~v~~~~~~g~GvfyWep~w~~~~-~~~~~~~n~~~~~~~g~ 345 (399)
T 1ur4_A 293 VQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVG-PAHRLEKNKALWETYGS 345 (399)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSS-CGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccCceEEEEEEccceeccc-ccccccccccccccCCC
Confidence 77777777777765432 24433322334533 34777777777777774
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=90.80 E-value=5.8 Score=42.00 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++.++.++.+.++|++.|.+.|..|. +.|..+.++ ++.+++..|++++-+|.+-+... + .. -.+.|+
T Consensus 261 e~~~~~a~~l~~~Ga~~I~l~DT~G~-~~P~~v~~l--------V~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa 331 (718)
T 3bg3_A 261 QYYMGLAEELVRAGTHILCIKDMAGL-LKPTACTML--------VSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGA 331 (718)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTSC-CCHHHHHHH--------HHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcCCC-cCHHHHHHH--------HHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCC
Confidence 45556677788899999988887665 778776653 45555554467899999877652 3 33 336899
Q ss_pred cEEEc-----C---CCCCHHHHHHHhCC
Q 015201 311 DVIGL-----D---WTVDMADGRKRLGN 330 (411)
Q Consensus 311 d~l~~-----d---~~~di~~~~~~~g~ 330 (411)
+.+.. . ...++.++...+..
T Consensus 332 ~~VD~ti~GlGertGN~~lE~vv~~L~~ 359 (718)
T 3bg3_A 332 DVVDVAADSMSGMTSQPSMGALVACTRG 359 (718)
T ss_dssp SEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred CEEEecCcccccccCchhHHHHHHHHHh
Confidence 99853 2 23577777766653
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.63 Score=45.47 Aligned_cols=144 Identities=9% Similarity=0.070 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCCH----------------HHHH--HHHHHHHHHHHHHHHhhCCCCCEEEEecC-
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLPP----------------HMWE--QWSEPYIREIVSLVRTKCPETPIVLYING- 297 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iSp----------------~~f~--ef~~Py~k~i~~~i~~~~~g~~~~~H~CG- 297 (411)
.+.+++..++|||.+-+.--.. +++|| ++|+ ++-+..++.|.++.++. |++ +.+--
T Consensus 47 ~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~--Gi~--~~stpf 122 (385)
T 1vli_A 47 FALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK--QVI--FLSTVC 122 (385)
T ss_dssp HHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT--TCE--EECBCC
T ss_pred HHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHc--CCc--EEEccC
Confidence 3445566789999986542111 23333 3333 46778899999999998 554 22222
Q ss_pred CcccHhHHhcCCCcEEEcC--CCCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 298 NGGFLERMKGTGVDVIGLD--WTVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 298 ~~~~l~~~~e~g~d~l~~d--~~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
+...++.+.++|++++-+. +.+|+.-+++. .|+.+.+.-|+ .|.+|+...+.-+... |...+||.= |.
T Consensus 123 D~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGm------aTl~Ei~~Ave~i~~~-Gn~~iiLlh-c~ 194 (385)
T 1vli_A 123 DEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAG------AEISDVHEAWRTIRAE-GNNQIAIMH-CV 194 (385)
T ss_dssp SHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTT------CCHHHHHHHHHHHHTT-TCCCEEEEE-EC
T ss_pred CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCC------CCHHHHHHHHHHHHHC-CCCcEEEEe-cc
Confidence 2235888989999999764 34566666554 34444443222 4899998877765543 445777753 33
Q ss_pred CCCCCcHH--HHHHHHHHHHhc
Q 015201 374 VLVGTPEE--AVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~E--ni~a~~~a~~~y 393 (411)
-...+|++ |+.++-..-+.|
T Consensus 195 s~YPtp~~~~nL~aI~~Lk~~f 216 (385)
T 1vli_A 195 AKYPAPPEYSNLSVIPMLAAAF 216 (385)
T ss_dssp SSSSCCGGGCCTTHHHHHHHHS
T ss_pred CCCCCChhhcCHHHHHHHHHHc
Confidence 23334444 566666555556
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.61 E-value=1.4 Score=40.64 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhCCCCCEEEE-ecCCcc------cHhHHhcCCCcEEEcCCCC-C--------------------------
Q 015201 275 IREIVSLVRTKCPETPIVLY-INGNGG------FLERMKGTGVDVIGLDWTV-D-------------------------- 320 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H-~CG~~~------~l~~~~e~g~d~l~~d~~~-d-------------------------- 320 (411)
+++.++.+++.+ ...++-| ..|+.. .+..+.+.|+|++-++... |
T Consensus 4 ~~~~f~~~~~~~-~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~ 82 (262)
T 2ekc_A 4 ISDKFTELKEKR-EKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVL 82 (262)
T ss_dssp HHHHHHHHHHHT-BCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcC-CceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHH
Confidence 445566665542 2223434 477753 2356678899998653211 1
Q ss_pred --HHHHHHHh-CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 321 --MADGRKRL-GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 321 --i~~~~~~~-g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
+.++++.+ .-.+.+||..+|..-.|. .+.++++.+.+. .|+|+ ++.|+|.+..+++.++++|..
T Consensus 83 ~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~----~~f~~~~~~aG~-dgvii-------~dl~~ee~~~~~~~~~~~gl~ 149 (262)
T 2ekc_A 83 ELSETLRKEFPDIPFLLMTYYNPIFRIGL----EKFCRLSREKGI-DGFIV-------PDLPPEEAEELKAVMKKYVLS 149 (262)
T ss_dssp HHHHHHHHHCTTSCEEEECCHHHHHHHCH----HHHHHHHHHTTC-CEEEC-------TTCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhcCCCCEEEEecCcHHHHhhH----HHHHHHHHHcCC-CEEEE-------CCCCHHHHHHHHHHHHHcCCc
Confidence 45566665 445666665555222343 344455555433 36666 356678899999999999854
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=90.60 E-value=2.7 Score=40.87 Aligned_cols=141 Identities=12% Similarity=0.047 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccH----hHHhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFL----ERMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l----~~~~e~g 309 (411)
++--+++++.+.++|++.|-++-+ ..||+.|+.+ +++.+.+ ++..+..+.-++...+ +.+.+.|
T Consensus 33 ~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~~d~e~v-----~~i~~~~----~~~~i~~l~r~~~~di~~a~~al~~ag 100 (370)
T 3rmj_A 33 KEEKIRVARQLEKLGVDIIEAGFA---AASPGDFEAV-----NAIAKTI----TKSTVCSLSRAIERDIRQAGEAVAPAP 100 (370)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEG---GGCHHHHHHH-----HHHHTTC----SSSEEEEEEESSHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC---CCCHHHHHHH-----HHHHHhC----CCCeEEEEecCCHHHHHHHHHHHhhCC
Confidence 345567788888999998865432 3567766542 3444332 2444555553444333 3445589
Q ss_pred CcEEEcC-C----------CCCHHHHHH----------HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLD-W----------TVDMADGRK----------RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d-~----------~~di~~~~~----------~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+++- . ..+.++..+ .+|..+.+ +.-| .-.-+++.+.+.++.+.+.+. .++
T Consensus 101 ~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~-~~ed--~~r~~~~~~~~~~~~~~~~Ga---~~i 174 (370)
T 3rmj_A 101 KKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEF-SCED--ALRSEIDFLAEICGAVIEAGA---TTI 174 (370)
T ss_dssp SEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEE-EEET--GGGSCHHHHHHHHHHHHHHTC---CEE
T ss_pred CCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE-ecCC--CCccCHHHHHHHHHHHHHcCC---CEE
Confidence 9888641 1 223333222 23433322 2111 123678888888877777643 345
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+...++...+ |+.+..+++++++.
T Consensus 175 ~l~DT~G~~~-P~~~~~lv~~l~~~ 198 (370)
T 3rmj_A 175 NIPDTVGYSI-PYKTEEFFRELIAK 198 (370)
T ss_dssp EEECSSSCCC-HHHHHHHHHHHHHH
T ss_pred EecCccCCcC-HHHHHHHHHHHHHh
Confidence 5444444334 55678888777764
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=2.3 Score=41.59 Aligned_cols=141 Identities=15% Similarity=0.017 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++-.+++++.+.++|++.|-++ ..-.+|.+++. ++.+.+.+...++..+.-++...++...+.|++.+
T Consensus 24 ~~~k~~ia~~L~~~Gv~~IE~g---~p~~~~~~~~~---------~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v 91 (382)
T 2ztj_A 24 TQDKVEIAKALDEFGIEYIEVT---TPVASPQSRKD---------AEVLASLGLKAKVVTHIQCRLDAAKVAVETGVQGI 91 (382)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEC---CTTSCHHHHHH---------HHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCcCEEEEc---CCcCCHHHHHH---------HHHHHhcCCCcEEEEEcccChhhHHHHHHcCCCEE
Confidence 3455677888889999988653 23467777632 34444443334444444444345777888999988
Q ss_pred Ec-CC---------CCCHHH----------HHHHhCCCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 314 GL-DW---------TVDMAD----------GRKRLGNDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 314 ~~-d~---------~~di~~----------~~~~~g~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
++ .. .++..+ ..+..|..+.+.. +... ..-+++.+.+.++++.+. .. .+.|. .
T Consensus 92 ~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~--~~ed~~~~~~~~~~~~~~~~~~~-a~-~i~l~--D 165 (382)
T 2ztj_A 92 DLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRF--SAEDTFRSEEQDLLAVYEAVAPY-VD-RVGLA--D 165 (382)
T ss_dssp EEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEE--EETTTTTSCHHHHHHHHHHHGGG-CS-EEEEE--E
T ss_pred EEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEE--EEEeCCCCCHHHHHHHHHHHHHh-cC-EEEec--C
Confidence 64 11 112222 2233452222322 2222 246788888888877776 33 34442 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhc
Q 015201 373 GVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 373 ~i~~~tp~Eni~a~~~a~~~y 393 (411)
++. ...|+.+..+++++++.
T Consensus 166 T~G-~~~P~~~~~lv~~l~~~ 185 (382)
T 2ztj_A 166 TVG-VATPRQVYALVREVRRV 185 (382)
T ss_dssp TTS-CCCHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHh
Confidence 232 23466678888877764
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.47 E-value=1.1 Score=41.94 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEE
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVI 313 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l 313 (411)
++..+++++++.++|++.|-+.-+..+-.-|.+ + ...++++.+.+. ++.++..|. .+...++...+.|++.+
T Consensus 25 ~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~-----~~~e~~~~i~~~-~~~~v~~l~-~n~~~i~~a~~~G~~~V 96 (295)
T 1ydn_A 25 TADKIALINRLSDCGYARIEATSFVSPKWVPQL-A-----DSREVMAGIRRA-DGVRYSVLV-PNMKGYEAAAAAHADEI 96 (295)
T ss_dssp HHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-T-----THHHHHHHSCCC-SSSEEEEEC-SSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHcCcCEEEEccCcCccccccc-c-----CHHHHHHHHHhC-CCCEEEEEe-CCHHHHHHHHHCCCCEE
Confidence 455667788888999999876533222111211 0 112334444443 367777786 34335788889999998
Q ss_pred EcCC-----------CCCHHH----------HHHHhCCCeeEEccCCcCc-----cCCCHHHHHHHHHHHHHHhCCCCeE
Q 015201 314 GLDW-----------TVDMAD----------GRKRLGNDISVQGNVDPAC-----LFSPLPALTDEIQRVVKCAGSRGHI 367 (411)
Q Consensus 314 ~~d~-----------~~di~~----------~~~~~g~~~~l~G~vd~~~-----L~gt~eeV~~ev~~~i~~~~~~gfI 367 (411)
.+.. ..+..+ ..+..| +.+.|.+.... -.-+++++.+.++++.+.+. ..+.
T Consensus 97 ~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~-d~i~ 173 (295)
T 1ydn_A 97 AVFISASEGFSKANINCTIAESIERLSPVIGAAINDG--LAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGC-HEVS 173 (295)
T ss_dssp EEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTT--CEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTC-SEEE
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 7642 122222 223345 34444443321 23588999888888777643 3566
Q ss_pred EeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 368 LNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 368 ls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
++..+++ ..|+.+..+++.+++.
T Consensus 174 l~Dt~G~---~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 174 LGDTIGR---GTPDTVAAMLDAVLAI 196 (295)
T ss_dssp EEETTSC---CCHHHHHHHHHHHHTT
T ss_pred ecCCCCC---cCHHHHHHHHHHHHHh
Confidence 6654554 3566778888877764
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.30 E-value=3.1 Score=39.31 Aligned_cols=139 Identities=11% Similarity=0.154 Sum_probs=82.3
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec--CCc--------c----cHhHHh
Q 015201 241 IIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN--GNG--------G----FLERMK 306 (411)
Q Consensus 241 ~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C--G~~--------~----~l~~~~ 306 (411)
++..++.|+|++.+.--++.--+. +-.....+++.+.++++ |.|+++.+- |.. . ......
T Consensus 114 ve~a~~~GAdaV~vlv~~~~d~~~----~~~~~~i~~v~~~~~~~--G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~ 187 (304)
T 1to3_A 114 AQAVKRDGAKALKLLVLWRSDEDA----QQRLNMVKEFNELCHSN--GLLSIIEPVVRPPRCGDKFDREQAIIDAAKELG 187 (304)
T ss_dssp HHHHHHTTCCEEEEEEEECTTSCH----HHHHHHHHHHHHHHHTT--TCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEEEEcCCCccH----HHHHHHHHHHHHHHHHc--CCcEEEEEECCCCccccCCChhHHHHHHHHHHH
Confidence 456678899998743322221112 33445788999999987 788766542 221 1 133455
Q ss_pred cCCCcEEEcCCC----CCHH---HHHHH----hCCC-eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC---
Q 015201 307 GTGVDVIGLDWT----VDMA---DGRKR----LGND-ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG--- 371 (411)
Q Consensus 307 e~g~d~l~~d~~----~di~---~~~~~----~g~~-~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g--- 371 (411)
++|+|.+-+... -+.. ++.+. .+-. +.+.||+ +++++.+.++..++. +..|++++..
T Consensus 188 ~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-------~~~~~~~~~~~a~~a-Ga~Gv~vGRaI~q 259 (304)
T 1to3_A 188 DSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGV-------DEKLFPRAVRVAMEA-GASGFLAGRAVWS 259 (304)
T ss_dssp TSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTS-------CTTTHHHHHHHHHHT-TCCEEEESHHHHG
T ss_pred HcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCC-------CHHHHHHHHHHHHHc-CCeEEEEehHHhC
Confidence 689999976542 2333 34444 3444 6667777 466777888888875 4457776543
Q ss_pred CCCCCCCcHHHH--------HHHHHHHHhc
Q 015201 372 HGVLVGTPEEAV--------AHFFEVGKSM 393 (411)
Q Consensus 372 c~i~~~tp~Eni--------~a~~~a~~~y 393 (411)
..+...-|.+-+ +++.+.+++.
T Consensus 260 ~~~~~~dp~~~~~~~~~~~~~~l~~iv~~~ 289 (304)
T 1to3_A 260 SVIGLPDTELMLRDVSAPKLQRLGEIVDEM 289 (304)
T ss_dssp GGTTCSCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHhhchHHHHHHHHHHhcC
Confidence 112113333444 8888877774
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.76 Score=40.56 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEcC
Q 015201 240 YIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGLD 316 (411)
Q Consensus 240 ~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~d 316 (411)
+++.+.++|+|++.+.+.. .. ...+++++.++++ |.++++-..+-.+ .+..+.+.|+|.+.++
T Consensus 69 ~~~~~~~~Gad~v~v~~~~----~~--------~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 69 ESQLLFDAGADYVTVLGVT----DV--------LTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHTTCSEEEEETTS----CH--------HHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhcCCCEEEEeCCC----Ch--------hHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEc
Confidence 3778889999999886532 11 2346677788887 5665543222222 3677888899988653
Q ss_pred CC--------CC---HHHHHHHhC-CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHH
Q 015201 317 WT--------VD---MADGRKRLG-NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVA 384 (411)
Q Consensus 317 ~~--------~d---i~~~~~~~g-~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~ 384 (411)
.. .+ +.++++.++ -.+...|||++. .++++++. |-.++++++.= +...-|.+.++
T Consensus 135 ~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~-----------~~~~~~~~-Gad~vvvGsai-~~~~d~~~~~~ 201 (211)
T 3f4w_A 135 TGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQ-----------TVKDYALL-GPDVVIVGSAI-THAADPAGEAR 201 (211)
T ss_dssp CCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTT-----------THHHHHTT-CCSEEEECHHH-HTCSSHHHHHH
T ss_pred CCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHH-----------HHHHHHHc-CCCEEEECHHH-cCCCCHHHHHH
Confidence 21 13 344556553 345667888652 23334433 33466666531 12234677788
Q ss_pred HHHHHHHh
Q 015201 385 HFFEVGKS 392 (411)
Q Consensus 385 a~~~a~~~ 392 (411)
.+.+..++
T Consensus 202 ~l~~~~~~ 209 (211)
T 3f4w_A 202 KISQVLLQ 209 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88777665
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=89.90 E-value=14 Score=35.16 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEec-CCCCCCCHH----HHHHHHHHHHHHHHHHHHhhC--CCCCEEEEecC-
Q 015201 228 TLLSHLTQAIADYIIYQVESG--AHCIQIFD-SWGGQLPPH----MWEQWSEPYIREIVSLVRTKC--PETPIVLYING- 297 (411)
Q Consensus 228 ~ll~~~~d~~~~~~~~~~e~G--~d~i~i~D-~~~~~iSp~----~f~ef~~Py~k~i~~~i~~~~--~g~~~~~H~CG- 297 (411)
++.+.+.++....++.+.+.| ++.++++. ...+++-|. .+ +-...++++.++.+|+.. |+.++++|.+.
T Consensus 105 ~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~-~~l~~~~~~a~~avr~~~~~p~~~v~~h~~~~ 183 (334)
T 1fob_A 105 TLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSY-SNIGALLHSGAWGVKDSNLATTPKIMIHLDDG 183 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCH-HHHHHHHHHHHHHHHTSCCSSCCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhH-HHHHHHHHHHHHHHHHhccCCCCeEEEEcCCc
Confidence 455555566666666777766 67777664 334444221 22 355678888899999987 77788999983
Q ss_pred -Ccc----cHhHHhcCC------CcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 298 -NGG----FLERMKGTG------VDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 298 -~~~----~l~~~~e~g------~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
+.. .++.+...| +|++++....- + .+ .++++.+.+..+++-+..++.=+
T Consensus 184 ~~~~~~~~~~~~~~~~g~~~~~~~DvIG~syYp~-------w----------~~---~~~~~~l~~~l~~~~~rygKpv~ 243 (334)
T 1fob_A 184 WSWDQQNYFYETVLATGELLSTDFDYFGVSYYPF-------Y----------SA---SATLASLKTSLANLQSTYDKPVV 243 (334)
T ss_dssp TCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCSS-------S----------CT---TCCHHHHHHHHHHHHHHHCCCEE
T ss_pred CchHHHHHHHHHHHHcCCCCCCCcCEEEEeCCCC-------c----------CC---CCCHHHHHHHHHHHHHHHCCCEE
Confidence 221 235555555 57776654320 0 00 15788888888888888876678
Q ss_pred EEeCCCCC
Q 015201 367 ILNLGHGV 374 (411)
Q Consensus 367 Ils~gc~i 374 (411)
|.-+||..
T Consensus 244 itEtG~~~ 251 (334)
T 1fob_A 244 VVETNWPV 251 (334)
T ss_dssp EEECCCCS
T ss_pred EEEccccc
Confidence 88888754
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.88 E-value=11 Score=35.65 Aligned_cols=153 Identities=15% Similarity=0.061 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHH
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GG----QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERM 305 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~----~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~ 305 (411)
+..++.++.+++.|||.|-++-.+ +. .+|++.=.+-+.|..+.+.+.. ++|+. ++-... .++.-
T Consensus 49 ~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-----~vpIS--IDT~~~~Va~aA 121 (314)
T 3tr9_A 49 NSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-----PQLIS--VDTSRPRVMREA 121 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-----CSEEE--EECSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-----CCeEE--EeCCCHHHHHHH
Confidence 455667888999999999887422 22 5777665566777666665432 55644 443333 45666
Q ss_pred hcCCCcEEE-cCC--CCCHHHHHHHhCCCeeEEccC-CcCccC-C----CHHHHHHHHHHHHHHhC----C-CCeEEeCC
Q 015201 306 KGTGVDVIG-LDW--TVDMADGRKRLGNDISVQGNV-DPACLF-S----PLPALTDEIQRVVKCAG----S-RGHILNLG 371 (411)
Q Consensus 306 ~e~g~d~l~-~d~--~~di~~~~~~~g~~~~l~G~v-d~~~L~-g----t~eeV~~ev~~~i~~~~----~-~gfIls~g 371 (411)
.+.|++++| +.. ..++..+.+++|-.+++|-.- +|.... . -.+|+.+..++.++.+. + ...||-||
T Consensus 122 l~aGa~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG 201 (314)
T 3tr9_A 122 VNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPG 201 (314)
T ss_dssp HHHTCCEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred HHcCCCEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC
Confidence 667999985 422 235777777888777776321 233221 1 13566676666666543 2 47999998
Q ss_pred CC---CCCCCcHHHHHHHH--HHHHhcCC
Q 015201 372 HG---VLVGTPEEAVAHFF--EVGKSMKY 395 (411)
Q Consensus 372 c~---i~~~tp~Eni~a~~--~a~~~yg~ 395 (411)
-+ +. .+..+|+..+- +..+++|.
T Consensus 202 ~G~~~F~-Kt~~~n~~lL~~l~~l~~lg~ 229 (314)
T 3tr9_A 202 FGQGNYG-KNVSENFYLLNKLPEFVAMGL 229 (314)
T ss_dssp CCSGGGC-CCHHHHHHHHHTTHHHHTTSS
T ss_pred CCchhhc-CCHHHHHHHHHHHHHHhcCCC
Confidence 77 53 44455666543 23445553
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.72 E-value=2.7 Score=38.34 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCC------CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG------GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVD 311 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~------~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d 311 (411)
.+.++..++.|++.|++-+... +-++.+.+.+. .+++.+..+++ ++++++|. .++...+.|+|
T Consensus 46 ~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~----a~~l~~l~~~~--~~~liInd-----~~~lA~~~gAd 114 (243)
T 3o63_A 46 AQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAA----CEILADAAHRY--GALFAVND-----RADIARAAGAD 114 (243)
T ss_dssp HHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHH----HHHHHHHHHHT--TCEEEEES-----CHHHHHHHTCS
T ss_pred HHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHH----HHHHHHHHHhh--CCEEEEeC-----HHHHHHHhCCC
Confidence 3455567889999999877542 23677766654 45666667766 67888762 45667778999
Q ss_pred EEEcCC-CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHH
Q 015201 312 VIGLDW-TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTD 352 (411)
Q Consensus 312 ~l~~d~-~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ 352 (411)
++++.. ..+..++++.++....+...+ .|++|+.+
T Consensus 115 GVHLg~~dl~~~~~r~~~~~~~~iG~S~------ht~~Ea~~ 150 (243)
T 3o63_A 115 VLHLGQRDLPVNVARQILAPDTLIGRST------HDPDQVAA 150 (243)
T ss_dssp EEEECTTSSCHHHHHHHSCTTCEEEEEE------CSHHHHHH
T ss_pred EEEecCCcCCHHHHHHhhCCCCEEEEeC------CCHHHHHH
Confidence 999854 457888888877544333211 56666544
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=89.68 E-value=14 Score=34.89 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++...+..++++|+++.+++. -++-.++.++...++|+|+
T Consensus 78 r~~v~~~~v~~~~grvpViaGvg~~------------------------------------st~eai~la~~A~~~Gada 121 (314)
T 3qze_A 78 HIQVIRRVVDQVKGRIPVIAGTGAN------------------------------------STREAVALTEAAKSGGADA 121 (314)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCCS------------------------------------SHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCc------------------------------------CHHHHHHHHHHHHHcCCCE
Confidence 3455555666677788888765432 0233456777788899999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHH
Q 015201 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMAD 323 (411)
Q Consensus 252 i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~ 323 (411)
+.+.-++-.-.|+ +=+.-|++++.+.. ++|++++.+ |.. . .+..+.+.+ +++.+ +...|+..
T Consensus 122 vlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~~ 191 (314)
T 3qze_A 122 CLLVTPYYNKPTQ----EGMYQHFRHIAEAV-----AIPQILYNVPGRTSCDMLPETVERLSKVP-NIIGIKEATGDLQR 191 (314)
T ss_dssp EEEECCCSSCCCH----HHHHHHHHHHHHHS-----CSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECSCCHHH
T ss_pred EEEcCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHhcCC-CEEEEEcCCCCHHH
Confidence 9887775544454 44667888888877 478988876 332 2 244555554 56655 34446655
Q ss_pred H---HHHhCCCeeEEccCCc
Q 015201 324 G---RKRLGNDISVQGNVDP 340 (411)
Q Consensus 324 ~---~~~~g~~~~l~G~vd~ 340 (411)
. .+..+++..+..|-|.
T Consensus 192 ~~~~~~~~~~~f~v~~G~d~ 211 (314)
T 3qze_A 192 AKEVIERVGKDFLVYSGDDA 211 (314)
T ss_dssp HHHHHHHSCTTSEEEESCGG
T ss_pred HHHHHHHcCCCeEEEecChH
Confidence 4 4445666666655554
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=89.61 E-value=1.2 Score=42.91 Aligned_cols=144 Identities=10% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCC-CCCCH---------------HHHHH--HHHHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 015201 238 ADYIIYQVESGAHCIQIFDSWG-GQLPP---------------HMWEQ--WSEPYIREIVSLVRTKCPETPIVLYINGNG 299 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~-~~iSp---------------~~f~e--f~~Py~k~i~~~i~~~~~g~~~~~H~CG~~ 299 (411)
.+.+++..++|||++-+.---. +++|| ++|++ +-+..++.|.++.++. |++ ++-..=+.
T Consensus 38 ~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~--Gi~-~~st~~d~ 114 (349)
T 2wqp_A 38 FEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK--GMI-FISTLFSR 114 (349)
T ss_dssp HHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT--TCE-EEEEECSH
T ss_pred HHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh--CCe-EEEeeCCH
Confidence 3445566789999986542100 12222 45554 4677788999999987 664 32233333
Q ss_pred ccHhHHhcCCCcEEEcCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 300 GFLERMKGTGVDVIGLDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 300 ~~l~~~~e~g~d~l~~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
..++.+.++|++++-+.. .+|+.-+++. .|+.+.+.-|+ .|.+|+...+.-+... |. .+||.= |.-.
T Consensus 115 ~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPviLstGm------at~~Ei~~Ave~i~~~-G~-~iiLlh-c~s~ 185 (349)
T 2wqp_A 115 AAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGM------NSIESIKKSVEIIREA-GV-PYALLH-CTNI 185 (349)
T ss_dssp HHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTT------CCHHHHHHHHHHHHHH-TC-CEEEEE-CCCC
T ss_pred HHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCC------CCHHHHHHHHHHHHHc-CC-CEEEEe-ccCC
Confidence 467888889999997643 4566666554 34444443222 4899998888776664 33 788863 4333
Q ss_pred CCCcHH--HHHHHHHHHHhc
Q 015201 376 VGTPEE--AVAHFFEVGKSM 393 (411)
Q Consensus 376 ~~tp~E--ni~a~~~a~~~y 393 (411)
..+|++ |+.++-..-+.|
T Consensus 186 Yp~~~~~~nL~ai~~lk~~f 205 (349)
T 2wqp_A 186 YPTPYEDVRLGGMNDLSEAF 205 (349)
T ss_dssp SSCCGGGCCTHHHHHHHHHC
T ss_pred CCCChhhcCHHHHHHHHHHC
Confidence 334443 566666655666
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.57 E-value=13 Score=35.10 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
+..+.++...+..++++|+++.+++. -++-.++.++...++|+|
T Consensus 76 Er~~v~~~~v~~~~grvpViaGvg~~------------------------------------st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 76 EHKRIIELCVEQVAKRVPVVAGAGSN------------------------------------STSEAVELAKHAEKAGAD 119 (315)
T ss_dssp HHHHHHHHHHHHHTTSSCBEEECCCS------------------------------------SHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCC------------------------------------CHHHHHHHHHHHHhcCCC
Confidence 34455566667777788888766431 023345677778889999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhc-CCCcEEEc-CCCCCH
Q 015201 251 CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKG-TGVDVIGL-DWTVDM 321 (411)
Q Consensus 251 ~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e-~g~d~l~~-d~~~di 321 (411)
++.+.-++-.-.|+ +=+.-|++.+.+.. ++|++++.. |.. . .+..+.+ .+ +++.+ +..-|+
T Consensus 120 avlv~~P~y~~~~~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nIvgiKdssgd~ 189 (315)
T 3si9_A 120 AVLVVTPYYNRPNQ----RGLYTHFSSIAKAI-----SIPIIIYNIPSRSVIDMAVETMRDLCRDFK-NIIGVKDATGKI 189 (315)
T ss_dssp EEEEECCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECSCCT
T ss_pred EEEECCCCCCCCCH----HHHHHHHHHHHHcC-----CCCEEEEeCchhhCCCCCHHHHHHHHhhCC-CEEEEEeCCCCH
Confidence 99887776544454 44667888888876 478888875 332 2 2445555 54 66655 333344
Q ss_pred ---HHHHHHhCCCeeEEccCCc
Q 015201 322 ---ADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 322 ---~~~~~~~g~~~~l~G~vd~ 340 (411)
.++.+..+++..+..|-|.
T Consensus 190 ~~~~~l~~~~~~~f~v~~G~d~ 211 (315)
T 3si9_A 190 ERASEQREKCGKDFVQLSGDDC 211 (315)
T ss_dssp HHHHHHHHHHCSSSEEEESCGG
T ss_pred HHHHHHHHHcCCCeEEEecCHH
Confidence 4455556666666555554
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=89.49 E-value=7.4 Score=35.00 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=74.9
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEEc
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIGL 315 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~~ 315 (411)
+.++.+.++|+|.+.+.|..+.+- -.++..++++.+++.. ++|+++| |.+. .++.+.+.|+|.+.+
T Consensus 34 ~~a~~~~~~Gad~i~v~d~~~~~~--------~~~~~~~~i~~i~~~~-~ipvi~~--ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 34 ELGKFYSEIGIDELVFLDITASVE--------KRKTMLELVEKVAEQI-DIPFTVG--GGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSS--------HHHHHHHHHHHHHTTC-CSCEEEE--SSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEECCchhhc--------CCcccHHHHHHHHHhC-CCCEEEe--CCCCCHHHHHHHHHcCCCEEEE
Confidence 445677889999999887654432 1234445555666554 6787765 3332 477788899999987
Q ss_pred CCC----C-CHHHHHHHhCCC-eeEEccCCcC------c--cCCCH----HHHHHHHHHHHHHhCCCCeEEeCCC--CCC
Q 015201 316 DWT----V-DMADGRKRLGND-ISVQGNVDPA------C--LFSPL----PALTDEIQRVVKCAGSRGHILNLGH--GVL 375 (411)
Q Consensus 316 d~~----~-di~~~~~~~g~~-~~l~G~vd~~------~--L~gt~----eeV~~ev~~~i~~~~~~gfIls~gc--~i~ 375 (411)
... . .+.++.+.+|.+ +.+. +|+. . ..|-. ....+.++++.+ .+-+.+++++-. +..
T Consensus 103 g~~~l~~p~~~~~~~~~~g~~~i~~~--~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~-~G~~~i~~~~~~~~g~~ 179 (253)
T 1thf_D 103 NTAAVENPSLITQIAQTFGSQAVVVA--IDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEK-RGAGEILLTSIDRDGTK 179 (253)
T ss_dssp SHHHHHCTHHHHHHHHHHCGGGEEEE--EEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHH-TTCSEEEEEETTTTTSC
T ss_pred ChHHHhChHHHHHHHHHcCCCcEEEE--EEEEccCCcEEEEECCCccccCCCHHHHHHHHHH-CCCCEEEEEeccCCCCC
Confidence 431 1 266777888743 3332 4442 1 12211 123344455444 333456664322 222
Q ss_pred CCCcHHHHHHHH
Q 015201 376 VGTPEEAVAHFF 387 (411)
Q Consensus 376 ~~tp~Eni~a~~ 387 (411)
.+.+++.++.+.
T Consensus 180 ~g~~~~~~~~l~ 191 (253)
T 1thf_D 180 SGYDTEMIRFVR 191 (253)
T ss_dssp SCCCHHHHHHHG
T ss_pred CCCCHHHHHHHH
Confidence 345566666554
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=1.9 Score=42.19 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+...++++++.++|++.+.+ ..+-.--||..|+.+....++.+.+..++. |+|++- .-=+...++.+.++ +|++-
T Consensus 156 e~a~~~a~~~k~aGa~~vk~-q~fkprts~~~f~gl~~egl~~L~~~~~~~--Gl~~~t-e~~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 156 EQVAAVAESIKAKGLKLIRG-GAFKPRTSPYDFQGLGLEGLKILKRVSDEY--GLGVIS-EIVTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp HHHHHHHHHHHHTTCCEEEC-BSSCCCSSTTSCCCCTHHHHHHHHHHHHHH--TCEEEE-ECCSGGGHHHHTTT-CSEEE
T ss_pred HHHHHHHHHHHHcCCCeEEc-ccccCCCChHhhcCCCHHHHHHHHHHHHHc--CCEEEE-ecCCHHHHHHHHhh-CCEEE
Confidence 34456667777899998743 332222234444444556667777777777 676542 21222357888888 99987
Q ss_pred cCC--CCCHHHHHH--HhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CCCCCCCCcH--HHHHHHH
Q 015201 315 LDW--TVDMADGRK--RLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GHGVLVGTPE--EAVAHFF 387 (411)
Q Consensus 315 ~d~--~~di~~~~~--~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc~i~~~tp~--Eni~a~~ 387 (411)
+.. ..+..-+++ .+|..+.+.-| +.+|.+|+...+..+... |...++|.- |.+.-|..+. =|+.++-
T Consensus 231 Igs~~~~n~~LL~~~a~~gkPVilk~G-----~~~t~~e~~~Ave~i~~~-Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~ 304 (385)
T 3nvt_A 231 IGARNMQNFELLKAAGRVDKPILLKRG-----LSATIEEFIGAAEYIMSQ-GNGKIILCERGIRTYEKATRNTLDISAVP 304 (385)
T ss_dssp ECGGGTTCHHHHHHHHTSSSCEEEECC-----TTCCHHHHHHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHH
T ss_pred ECcccccCHHHHHHHHccCCcEEEecC-----CCCCHHHHHHHHHHHHHc-CCCeEEEEECCCCCCCCCCccccCHHHHH
Confidence 643 234433333 34443333322 247999998888876654 444566643 2221111122 2556555
Q ss_pred HHHHhcCC
Q 015201 388 EVGKSMKY 395 (411)
Q Consensus 388 ~a~~~yg~ 395 (411)
..-+.++.
T Consensus 305 ~lk~~~~l 312 (385)
T 3nvt_A 305 ILKKETHL 312 (385)
T ss_dssp HHHHHBSS
T ss_pred HHHHhcCC
Confidence 54444553
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.25 E-value=15 Score=34.67 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++...+..++++|+++.+++. + ++-.++.++...++|+|+
T Consensus 79 r~~v~~~~v~~~~grvpViaGvg~~-----------~-------------------------t~~ai~la~~A~~~Gada 122 (315)
T 3na8_A 79 WDEVVDFTLKTVAHRVPTIVSVSDL-----------T-------------------------TAKTVRRAQFAESLGAEA 122 (315)
T ss_dssp HHHHHHHHHHHHTTSSCBEEECCCS-----------S-------------------------HHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCC-----------C-------------------------HHHHHHHHHHHHhcCCCE
Confidence 3455555667777788888766432 0 133456777788899999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHH-hcCCCcEEEc-CCCCCHH
Q 015201 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERM-KGTGVDVIGL-DWTVDMA 322 (411)
Q Consensus 252 i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~-~e~g~d~l~~-d~~~di~ 322 (411)
+.+.-++-.-.|+ +-+.-|++++.+.. ++|++++.+ |.. . .+..+ .+.+ ++..+ +...|+.
T Consensus 123 vlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~L~a~~p-nIvgiKdssgd~~ 192 (315)
T 3na8_A 123 VMVLPISYWKLNE----AEVFQHYRAVGEAI-----GVPVMLYNNPGTSGIDMSVELILRIVREVD-NVTMVKESTGDIQ 192 (315)
T ss_dssp EEECCCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHST-TEEEEEECSSCHH
T ss_pred EEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCcEEEEeCcchhCcCCCHHHHHHHHhcCC-CEEEEECCCCCHH
Confidence 9887665444455 44667888888776 478888875 322 2 24455 5554 56655 3344655
Q ss_pred HH---HHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHH
Q 015201 323 DG---RKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 323 ~~---~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
.. .+..+++..+..|.|... ...+.. |..|+|-+++|-. |+-+.+++++++
T Consensus 193 ~~~~~~~~~~~~f~v~~G~D~~~------------l~~l~~-G~~G~is~~an~~-----P~~~~~l~~a~~ 246 (315)
T 3na8_A 193 RMHKLRLLGEGRVPFYNGCNPLA------------LEAFVA-GAKGWCSAAPNLI-----PTLNGQLYQAVL 246 (315)
T ss_dssp HHHHHHHHTTTCSCEEECCGGGH------------HHHHHH-TCSEEEESGGGTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCchHHH------------HHHHHC-CCCEEEechhhhC-----HHHHHHHHHHHh
Confidence 54 444555555554444421 122222 3346665555432 455666666554
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.56 Score=44.92 Aligned_cols=141 Identities=11% Similarity=-0.013 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHh----HHhcCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLE----RMKGTG 309 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~----~~~e~g 309 (411)
++-.+++++.+.++|++.|-++- ...||+.|+. .+++.+.+ ++..+....-++...++ .+.+.|
T Consensus 27 ~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~~d~e~-----v~~i~~~~----~~~~i~~l~r~~~~~i~~a~~al~~ag 94 (325)
T 3eeg_A 27 TEEKIIVAKALDELGVDVIEAGF---PVSSPGDFNS-----VVEITKAV----TRPTICALTRAKEADINIAGEALRFAK 94 (325)
T ss_dssp TTHHHHHHHHHHHHTCSEEEEEC---TTSCHHHHHH-----HHHHHHHC----CSSEEEEECCSCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC---CCCCHhHHHH-----HHHHHHhC----CCCEEEEeecCCHHHHHHHHHhhcccC
Confidence 34456778888899999886642 2368877643 24444443 25555445445543344 444559
Q ss_pred CcEEEcC-CC----------C----------CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEE
Q 015201 310 VDVIGLD-WT----------V----------DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHIL 368 (411)
Q Consensus 310 ~d~l~~d-~~----------~----------di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIl 368 (411)
++.+++- .. . +..+..+..|..++ .|.-|. -.-+++.+.+.++++.+.+ -.++
T Consensus 95 ~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~-f~~~d~--~~~~~~~~~~~~~~~~~~G---~~~i 168 (325)
T 3eeg_A 95 RSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE-FFCEDA--GRADQAFLARMVEAVIEAG---ADVV 168 (325)
T ss_dssp SEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE-EEEETG--GGSCHHHHHHHHHHHHHHT---CSEE
T ss_pred CCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE-EEcccc--ccchHHHHHHHHHHHHhcC---CCEE
Confidence 8887541 10 1 11222334564433 332221 2368888888888877764 3466
Q ss_pred eCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 369 NLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 369 s~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
+...++... .|+.+..+++++++.
T Consensus 169 ~l~DT~G~~-~P~~v~~lv~~l~~~ 192 (325)
T 3eeg_A 169 NIPDTTGYM-LPWQYGERIKYLMDN 192 (325)
T ss_dssp ECCBSSSCC-CHHHHHHHHHHHHHH
T ss_pred EecCccCCc-CHHHHHHHHHHHHHh
Confidence 666555544 456688888887764
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=2.2 Score=40.13 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHH---HHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMW---EQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f---~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
++..+++++.+.++|++.|-++- +.+|+.. .+. .+++..+++. ++.++..+.+ +...++...+.|+
T Consensus 26 ~e~k~~i~~~L~~~Gv~~IE~g~----~~~~~~~p~~~d~-----~~~~~~~~~~-~~~~~~~l~~-~~~~i~~a~~ag~ 94 (298)
T 2cw6_A 26 TPVKIKLIDMLSEAGLSVIETTS----FVSPKWVPQMGDH-----TEVLKGIQKF-PGINYPVLTP-NLKGFEAAVAAGA 94 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEECCEE----CCCTTTCGGGTTH-----HHHHHHSCCC-TTCBCCEECC-SHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCcCEEEECC----CcCcccccccCCH-----HHHHHHHhhC-CCCEEEEEcC-CHHhHHHHHHCCC
Confidence 45556778888899999875432 2333211 111 1234444432 3555444442 3235788889999
Q ss_pred cEEEcCCCC-CH--------------------HHHHHHhCCCeeEEccCCcC----c-cCCCHHHHHHHHHHHHHHhCCC
Q 015201 311 DVIGLDWTV-DM--------------------ADGRKRLGNDISVQGNVDPA----C-LFSPLPALTDEIQRVVKCAGSR 364 (411)
Q Consensus 311 d~l~~d~~~-di--------------------~~~~~~~g~~~~l~G~vd~~----~-L~gt~eeV~~ev~~~i~~~~~~ 364 (411)
+.+++-... |. .+..+..|. .+.+++-.. . -.-+++++.+.++++.+.+ ..
T Consensus 95 ~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~--~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G-a~ 171 (298)
T 2cw6_A 95 KEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANI--SVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG-CY 171 (298)
T ss_dssp SEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTC--EEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT-CS
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC-CC
Confidence 998752211 11 122233453 344443321 1 1247888887777776653 33
Q ss_pred CeEEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 365 GHILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 365 gfIls~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.+.|. .++. ...|+.+..+++.+++.
T Consensus 172 ~i~l~--DT~G-~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 172 EISLG--DTIG-VGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp EEEEE--ETTS-CCCHHHHHHHHHHHHHH
T ss_pred EEEec--CCCC-CcCHHHHHHHHHHHHHh
Confidence 44444 2232 24566788888777764
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.82 E-value=15 Score=34.24 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++...+..++++|++..+++. + ++-.++.++...++|+|+
T Consensus 62 r~~v~~~~~~~~~grvpviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gada 105 (297)
T 3flu_A 62 HTAVIEAVVKHVAKRVPVIAGTGAN-----------N-------------------------TVEAIALSQAAEKAGADY 105 (297)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCCS-----------S-------------------------HHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCCc-----------C-------------------------HHHHHHHHHHHHHcCCCE
Confidence 3455555667777789988766442 0 233456677788899999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHH
Q 015201 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMAD 323 (411)
Q Consensus 252 i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~ 323 (411)
+.+.-++-.-.|. +=+.-|++.+.+.. +.|++++.+ |.. . .+..+.+.+ ++..+ +...|+..
T Consensus 106 vlv~~P~y~~~~~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiKdssgd~~~ 175 (297)
T 3flu_A 106 TLSVVPYYNKPSQ----EGIYQHFKTIAEAT-----SIPMIIYNVPGRTVVSMTNDTILRLAEIP-NIVGVKEASGNIGS 175 (297)
T ss_dssp EEEECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSSCCCHHHHHHHTTST-TEEEEEECSCCHHH
T ss_pred EEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEECCchhccCCCHHHHHHHHcCC-CEEEEEeCCCCHHH
Confidence 9887765443454 34566888888876 478888875 322 2 234455543 55555 33446554
Q ss_pred H---HHHhCCCeeEEccCCc
Q 015201 324 G---RKRLGNDISVQGNVDP 340 (411)
Q Consensus 324 ~---~~~~g~~~~l~G~vd~ 340 (411)
. .+..+++..+..|-|.
T Consensus 176 ~~~~~~~~~~~f~v~~G~d~ 195 (297)
T 3flu_A 176 NIELINRAPEGFVVLSGDDH 195 (297)
T ss_dssp HHHHHHHSCTTCEEEECCGG
T ss_pred HHHHHHhcCCCeEEEECcHH
Confidence 4 4555666666655554
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=7.7 Score=36.69 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEc
Q 015201 243 YQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGL 315 (411)
Q Consensus 243 ~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~ 315 (411)
.+.+.|+..|.+.......++ .+++.++++.+++. +..+.+ +.|... .++.+++.|++.+++
T Consensus 95 ~~~~~g~~~i~~~gGe~p~~~--------~~~~~~li~~i~~~--~~~i~~-s~g~l~~e~l~~L~~ag~~~v~i 158 (348)
T 3iix_A 95 LAVQFGAKTIVLQSGEDPYXM--------PDVISDIVKEIKKM--GVAVTL-SLGEWPREYYEKWKEAGADRYLL 158 (348)
T ss_dssp HHHHTTCSEEEEEESCCGGGT--------THHHHHHHHHHHTT--SCEEEE-ECCCCCHHHHHHHHHHTCCEEEC
T ss_pred HHHHCCCCEEEEEeCCCCCcc--------HHHHHHHHHHHHhc--CceEEE-ecCCCCHHHHHHHHHhCCCEEee
Confidence 345678998877543212233 25667778888876 443332 334443 578899999998865
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.09 E-value=18 Score=34.31 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++...+..++++|+++.+++. + ++-.++.++...++|+|+
T Consensus 89 r~~vi~~~ve~~~grvpViaGvg~~-----------s-------------------------t~eai~la~~A~~~Gada 132 (332)
T 2r8w_A 89 RRRAIEAAATILRGRRTLMAGIGAL-----------R-------------------------TDEAVALAKDAEAAGADA 132 (332)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECCS-----------S-------------------------HHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCCC-----------C-------------------------HHHHHHHHHHHHhcCCCE
Confidence 3455555667777789988766441 0 133446677778899999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CC-cc--cHhHHhcCCCcEEEc-CCCCC---
Q 015201 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GN-GG--FLERMKGTGVDVIGL-DWTVD--- 320 (411)
Q Consensus 252 i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~-~~--~l~~~~e~g~d~l~~-d~~~d--- 320 (411)
+.+.-++-.-.|+ +=+.-|++.+.+.. ++|++++.. |. .. .+..+.+.+ +++.+ +..-|
T Consensus 133 vlv~~P~Y~~~s~----~~l~~~f~~VA~a~-----~lPiilYn~P~~tg~~l~~e~~~~La~~p-nIvgiKdssgd~~~ 202 (332)
T 2r8w_A 133 LLLAPVSYTPLTQ----EEAYHHFAAVAGAT-----ALPLAIYNNPTTTRFTFSDELLVRLAYIP-NIRAIKMPLPADAD 202 (332)
T ss_dssp EEECCCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEECCHHHHCCCCCHHHHHHHHTST-TEEEEEECCCTTCC
T ss_pred EEECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHcCC-CEEEEEeCCCCchh
Confidence 9887665443455 45667888888765 478888874 43 22 244555543 56655 44456
Q ss_pred -HHHHHHHh---CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHH
Q 015201 321 -MADGRKRL---GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGK 391 (411)
Q Consensus 321 -i~~~~~~~---g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~ 391 (411)
+..+.+.. +++..+. .|..+-+ ...+. .|..|+|-+.+|- -|+-+.+++++++
T Consensus 203 ~~~~~~~l~~~~~~~f~v~--------~G~D~~~----l~~l~-~G~~G~is~~anv-----~P~~~~~l~~a~~ 259 (332)
T 2r8w_A 203 YAGELARLRPKLSDDFAIG--------YSGDWGC----TDATL-AGGDTWYSVVAGL-----LPVPALQLMRAAQ 259 (332)
T ss_dssp HHHHHHHHTTTSCTTCEEE--------ECCHHHH----HHHHH-TTCSEEEESGGGT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEE--------eCchHHH----HHHHH-CCCCEEEeCHHHh-----CHHHHHHHHHHHH
Confidence 77766543 2223222 2443322 22222 2345777666553 2455666666554
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=88.06 E-value=17 Score=33.81 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|+++.+++. + ++-.++.++...++|+|++
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gadav 100 (291)
T 3tak_A 57 TQVIKEIIRVANKRIPIIAGTGAN-----------S-------------------------TREAIELTKAAKDLGADAA 100 (291)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCS-----------S-------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCC-----------C-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 455555667777789988766441 0 2333466777788999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMADG 324 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~~ 324 (411)
.+.-++-.-.|+ +=+.-|++++.+.. +.|++++.+ |.. . .+..+.+.+ ++..+ +...|+...
T Consensus 101 lv~~P~y~~~~~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~ssgd~~~~ 170 (291)
T 3tak_A 101 LLVTPYYNKPTQ----EGLYQHYKAIAEAV-----ELPLILYNVPGRTGVDLSNDTAVRLAEIP-NIVGIKDATGDVPRG 170 (291)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHHHHTTST-TEEEEEECSCCHHHH
T ss_pred EEcCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEecccccCCCCCHHHHHHHHcCC-CEEEEEeCCCCHHHH
Confidence 887765443454 34567888888876 478888875 332 2 234455543 55555 334466554
Q ss_pred ---HHHhCCCeeEEccCC
Q 015201 325 ---RKRLGNDISVQGNVD 339 (411)
Q Consensus 325 ---~~~~g~~~~l~G~vd 339 (411)
.+..+++..+..|-|
T Consensus 171 ~~~~~~~~~~f~v~~G~d 188 (291)
T 3tak_A 171 KALIDALNGKMAVYSGDD 188 (291)
T ss_dssp HHHHHHHTTSSEEEECCH
T ss_pred HHHHHHcCCCeEEEECcH
Confidence 444555554444333
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=87.78 E-value=17 Score=34.86 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=72.8
Q ss_pred HHHhCCCEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEEEcCCCC
Q 015201 244 QVESGAHCIQIFDSWG--GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVIGLDWTV 319 (411)
Q Consensus 244 ~~e~G~d~i~i~D~~~--~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l~~d~~~ 319 (411)
..+.|++.|++...+. ..++ .+++.++++.+++. +..+.+ +.|... .++.+++.|++.++++-..
T Consensus 111 ~~~~g~~~i~~~gg~~~p~~~~--------~~~l~~ll~~ik~~--g~~i~~-t~G~l~~e~l~~L~~aGvd~v~i~les 179 (369)
T 1r30_A 111 AKAAGSTRFCMGAAWKNPHERD--------MPYLEQMVQGVKAM--GLEACM-TLGTLSESQAQRLANAGLDYYNHNLDT 179 (369)
T ss_dssp HHHTTCSEEEEEECCSSCCTTT--------HHHHHHHHHHHHHT--TSEEEE-ECSSCCHHHHHHHHHHCCCEEECCCBS
T ss_pred HHHcCCcEEEEEeCCCCCCcCC--------HHHHHHHHHHHHHc--CCeEEE-ecCCCCHHHHHHHHHCCCCEEeecCcC
Confidence 3457889888766542 2222 46677788888876 444433 556654 4788999999999875443
Q ss_pred CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCC--CCeEEeCCCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 320 DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGS--RGHILNLGHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 320 di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~--~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
+ .+..+++.+ .++.+++.+.++.+.+.+-. -++|++. +-..|.+..+++.+++.+
T Consensus 180 ~-~e~~~~i~~-------------~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl------~et~ed~~~~l~~l~~l~ 236 (369)
T 1r30_A 180 S-PEFYGNIIT-------------TRTYQERLDTLEKVRDAGIKVCSGGIVGL------GETVKDRAGLLLQLANLP 236 (369)
T ss_dssp C-HHHHHHHCC-------------SSCHHHHHHHHHHHHHHHCEEECCEEECS------SCCHHHHHHHHHHHHSSS
T ss_pred C-HHHHHHhCC-------------CCCHHHHHHHHHHHHHcCCeeeeeeEeeC------CCCHHHHHHHHHHHHhhc
Confidence 4 333333331 13677777777666555322 2333322 234677778888787776
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=4.3 Score=41.52 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW 317 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~ 317 (411)
.+.++..++.|++.|++-+... +.+.+ ....+++.+..+++ ++++++|. .++...+.|.|++|+..
T Consensus 28 ~~~ve~al~~Gv~~vQlR~K~~---~~~~~----~~~a~~l~~l~~~~--~v~liIND-----~~dlA~~~gAdGVHLgq 93 (540)
T 3nl6_A 28 YGQVEAGLQNGVTLVQIREKDA---DTKFF----IEEALQIKELCHAH--NVPLIIND-----RIDVAMAIGADGIHVGQ 93 (540)
T ss_dssp HHHHHHHHHTTCSEEEECCSSS---CTTHH----HHHHHHHHHHHHHT--TCCEEECS-----CSHHHHHTTCSEEEECT
T ss_pred HHHHHHHHHCCCCEEEEecCCC---CHHHH----HHHHHHHHHHHHhc--CCEEEEeC-----cHHHHHHcCCCEEEECh
Confidence 3445677789999999877543 33333 33455666666766 68888863 56777889999999954
Q ss_pred -CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHH
Q 015201 318 -TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353 (411)
Q Consensus 318 -~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~e 353 (411)
.+++.++++.+|.+..+...+ .|++|+++.
T Consensus 94 ~dl~~~~ar~~lg~~~iiG~S~------ht~eea~~A 124 (540)
T 3nl6_A 94 DDMPIPMIRKLVGPDMVIGWSV------GFPEEVDEL 124 (540)
T ss_dssp TSSCHHHHHHHHCTTSEEEEEE------CSHHHHHHH
T ss_pred hhcCHHHHHHHhCCCCEEEEEC------CCHHHHHHH
Confidence 467899999887654443222 367776544
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=2.6 Score=40.38 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~ 310 (411)
+++.+.++.+.++|+|.|.+.|..|. +.|+...++ ++.+++..|++++-+|.+.+... + . .-.+.|+
T Consensus 169 ~~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa 239 (337)
T 3ble_A 169 DYVKSLVEHLSKEHIERIFLPDTLGV-LSPEETFQG--------VDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGV 239 (337)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTCC-CCHHHHHHH--------HHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCC-cCHHHHHHH--------HHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCC
Confidence 34455666778899999999887654 788877665 34444444467899999877652 2 2 2336799
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 240 ~~vd 243 (337)
T 3ble_A 240 KGLH 243 (337)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9985
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=87.47 E-value=4.8 Score=38.92 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH----------HHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 232 HLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM----------WEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 232 ~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~----------f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
.+.+...+.++...++|.|+|-+.-.-+ .|+||.. ++.- .-+..++++.+++..|.-|+.+-+.+
T Consensus 158 ~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR-~rf~~evv~aVr~~vg~~~v~vRls~ 236 (361)
T 3gka_A 158 GVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENR-ARLLLEVVDAAIDVWSAARVGVHLAP 236 (361)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH-SHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhc-HHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 3334444556677889999998875432 1344420 1111 22344555555554322267776654
Q ss_pred Cc------------c---cHhHHhcCCCcEEEcCCC----CCHHHHHHHhCCCeeEEccC
Q 015201 298 NG------------G---FLERMKGTGVDVIGLDWT----VDMADGRKRLGNDISVQGNV 338 (411)
Q Consensus 298 ~~------------~---~l~~~~e~g~d~l~~d~~----~di~~~~~~~g~~~~l~G~v 338 (411)
.. . +...+.+.|+|.+++... .-...+|+.++..++..|++
T Consensus 237 ~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi 296 (361)
T 3gka_A 237 RGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNENF 296 (361)
T ss_dssp TCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESSC
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 31 1 135566789999987432 23677888887666666765
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=87.13 E-value=5.2 Score=38.72 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHH----------HHHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Q 015201 232 HLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPHM----------WEQWSEPYIREIVSLVRTKCPETPIVLYING 297 (411)
Q Consensus 232 ~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~----------f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG 297 (411)
.+.+...+.++...++|.|+|-+.-.-+ .|+||.. ++. =..+..++++.+++..|..|+.+-+.+
T Consensus 150 ~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslen-R~rf~~eiv~aVr~~vg~~~v~vRls~ 228 (362)
T 4ab4_A 150 DIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLEN-RARLLLEVTDAAIEVWGAQRVGVHLAP 228 (362)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHH-HHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhh-HHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 3334444556677889999998875432 1344420 111 123444555555554322267766654
Q ss_pred Cc------------c---cHhHHhcCCCcEEEcCCC----CCHHHHHHHhCCCeeEEccC
Q 015201 298 NG------------G---FLERMKGTGVDVIGLDWT----VDMADGRKRLGNDISVQGNV 338 (411)
Q Consensus 298 ~~------------~---~l~~~~e~g~d~l~~d~~----~di~~~~~~~g~~~~l~G~v 338 (411)
.. . +...+.+.|+|.+++... .-...+|+.++..++..|++
T Consensus 229 ~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggi 288 (362)
T 4ab4_A 229 RADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERF 288 (362)
T ss_dssp TCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESSC
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCCC
Confidence 31 1 135566789999987432 23677888887666666765
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=86.96 E-value=2.2 Score=39.54 Aligned_cols=110 Identities=11% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHhcCCCcEEEcC-----CCCC----------------------
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGG------FLERMKGTGVDVIGLD-----WTVD---------------------- 320 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~e~g~d~l~~d-----~~~d---------------------- 320 (411)
.+++.++.+++.+....+-+-.+|+.. .+..+.+.|+|++.++ +..|
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 355667777766422223455678862 2455677899999764 2222
Q ss_pred --HHHHHHH-hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 321 --MADGRKR-LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 321 --i~~~~~~-~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+.++++. ..-.+.+||-.||..-.| +.+.++++.+.+.+ |+|+ ++.|+|....+.+.++++|-
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g----~e~f~~~~~~aGvd-gvii-------~Dlp~ee~~~~~~~~~~~gl 149 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANG----IDEFYTKAQAAGVD-SVLI-------ADVPVEESAPFSKAAKAHGI 149 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHC----HHHHHHHHHHHTCC-EEEE-------TTSCGGGCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhh----HHHHHHHHHHcCCC-EEEe-------CCCCHhhHHHHHHHHHHcCC
Confidence 1223443 233477787777732234 24455555554333 5555 24445556666666666664
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=86.94 E-value=19 Score=33.26 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCC--EEEEecC------C-------
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETP--IVLYING------N------- 298 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~--~~~H~CG------~------- 298 (411)
.+.+.+.++...+.|++.|.+.- ...--+++.| +.+...++++.+.++++ |+. +.+|.+. +
T Consensus 107 ~~~~~~~i~~A~~lG~~~v~~~~-~~~~~~~~~~-~~~~~~l~~l~~~a~~~--Gv~~~l~~En~~~e~~~~~t~~~~~~ 182 (303)
T 3l23_A 107 MEYWKATAADHAKLGCKYLIQPM-MPTITTHDEA-KLVCDIFNQASDVIKAE--GIATGFGYHNHNMEFNRVATKEQQEK 182 (303)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECS-CCCCCSHHHH-HHHHHHHHHHHHHHHHT--TCTTCEEEECCSGGGSEECCTTTC--
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-CCCCCCHHHH-HHHHHHHHHHHHHHHHC--CCcceEEEccCcceeecccccccccc
Confidence 34445566677788999987642 1122466666 55689999999999988 789 9999876 2
Q ss_pred ------------cc-cHhHHh-cCCCcE--EEcC------CCCCHHHHHHHhCCCeeEEccCCcCccCC-CHHHHHHHHH
Q 015201 299 ------------GG-FLERMK-GTGVDV--IGLD------WTVDMADGRKRLGNDISVQGNVDPACLFS-PLPALTDEIQ 355 (411)
Q Consensus 299 ------------~~-~l~~~~-e~g~d~--l~~d------~~~di~~~~~~~g~~~~l~G~vd~~~L~g-t~eeV~~ev~ 355 (411)
.. .++.+. +.+-+. +.+| ...|+.+..+++++++..+=-=| ....| +-+-=-..+.
T Consensus 183 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~D~~h~~~~g~d~~~~i~~~~~ri~~vH~kD-~~~~G~~G~id~~~i~ 261 (303)
T 3l23_A 183 VKGNPFAAFMKVGDQIYDLMLKDTDPSKVYFEMDVYWTVMGQNDPVEYMQKHPDRIKVLHIKD-RAVFGQSGMMNFEMIF 261 (303)
T ss_dssp --------CCCCSEEHHHHHHHHSCTTTEEEEEEHHHHHHTTCCHHHHHHHCTTTEEEEEECC-SSSTTSSSCCCHHHHH
T ss_pred cccccccccccCchHHHHHHHHhCCchhEEEEEehHHHHHcCCCHHHHHHHhcCcEEEEEecC-CcCCCCCCccCHHHHH
Confidence 11 355554 355442 3444 24589899899998765431112 22235 3322234455
Q ss_pred HHHHHhCCCCeEEeCCCCCC-CCCcHHHHHHHHHHHHhcCC
Q 015201 356 RVVKCAGSRGHILNLGHGVL-VGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 356 ~~i~~~~~~gfIls~gc~i~-~~tp~Eni~a~~~a~~~yg~ 395 (411)
+.++..+-.|+|+-... .| .+.|.+.++.-++..+++|.
T Consensus 262 ~~L~~~gy~G~ivE~~~-~~~~~~p~~~~~~s~~~l~~~~~ 301 (303)
T 3l23_A 262 KQMYANGIKDYFVELEQ-MPDGRTQFAGVKDCADYLIKAPF 301 (303)
T ss_dssp HHHHHHTCCCEEECCCC-CTTSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCEEEEEecC-CccCCCHHHHHHHHHHHHHHcCC
Confidence 56666654577754432 22 24588999999999998874
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.80 E-value=2.1 Score=40.28 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~e~g~d 311 (411)
+..++++.+.++|+|.|.+.|..|. ..|+...+. ++.+++..|++|+.+|.+.+.. ..-.-.+.|++
T Consensus 160 ~~~~~~~~~~~~G~d~i~l~DT~G~-~~P~~~~~l--------v~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~ 230 (302)
T 2ftp_A 160 QVAWVARELQQMGCYEVSLGDTIGV-GTAGATRRL--------IEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIA 230 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESSSC-CCHHHHHHH--------HHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC-cCHHHHHHH--------HHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCC
Confidence 3445555677889999999976664 788776654 4555555445789999976654 23334468999
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
.++.
T Consensus 231 ~vd~ 234 (302)
T 2ftp_A 231 VFDS 234 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=86.63 E-value=9.6 Score=36.61 Aligned_cols=147 Identities=9% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhCCC-----EEEEe----cCCC-------CCCC-HHHHHH--HHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 236 AIADYIIYQVESGAH-----CIQIF----DSWG-------GQLP-PHMWEQ--WSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d-----~i~i~----D~~~-------~~iS-p~~f~e--f~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
...+.+++..++|+| .|-+- |... +..+ -+.|++ +-+..+++|.++.++. |++ ++=..
T Consensus 22 ~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~--Gi~-~~st~ 98 (350)
T 3g8r_A 22 HGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKAN--GFK-AICTP 98 (350)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHT--TCE-EEEEE
T ss_pred HHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCc-EEecc
Confidence 334555666778887 65432 1110 1111 134443 6788899999999998 664 22232
Q ss_pred CCcccHhHHhcCCCcEEEcCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 297 GNGGFLERMKGTGVDVIGLDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 297 G~~~~l~~~~e~g~d~l~~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
=+...++.+.++|++++-+.. .+|+.-+++. .|+.+.+.-|+ .|.+|+...+.-+... +. .+||- =|
T Consensus 99 fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGm------stl~Ei~~Ave~i~~~-g~-~viLl-hC 169 (350)
T 3g8r_A 99 FDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAG------ARREDIDKVVSFMLHR-GK-DLTIM-HC 169 (350)
T ss_dssp CSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTT------CCHHHHHHHHHHHHTT-TC-CEEEE-EC
T ss_pred CCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCC------CCHHHHHHHHHHHHHc-CC-CEEEE-ec
Confidence 333468889999999997643 4566666553 34444443222 5899998888776654 33 57773 13
Q ss_pred CCCCCCcHH--HHHHHHHHHHhcC
Q 015201 373 GVLVGTPEE--AVAHFFEVGKSMK 394 (411)
Q Consensus 373 ~i~~~tp~E--ni~a~~~a~~~yg 394 (411)
.-...+|++ |+.++-..-+.|+
T Consensus 170 ~s~YPt~~~~~nL~aI~~Lk~~fp 193 (350)
T 3g8r_A 170 VAEYPTPDDHLHLARIKTLRQQYA 193 (350)
T ss_dssp CCCSSCCGGGCCTTHHHHHHHHCT
T ss_pred CCCCCCCcccCCHHHHHHHHHHCC
Confidence 323334554 6677666666673
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=3.3 Score=38.85 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~d 311 (411)
++.+.++.+.++|++.|.+.|..| .++|+.+.+++. .+++..|++++-+|.+-+... + . .-.+.|++
T Consensus 157 ~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~~~~lv~--------~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~ 227 (298)
T 2cw6_A 157 KVAEVTKKFYSMGCYEISLGDTIG-VGTPGIMKDMLS--------AVMQEVPLAALAVHCHDTYGQALANTLMALQMGVS 227 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTS-CCCHHHHHHHHH--------HHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC-CcCHHHHHHHHH--------HHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCC
Confidence 344555677788999999998765 589988877543 333333356788999877652 2 2 23467998
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
.+..
T Consensus 228 ~vd~ 231 (298)
T 2cw6_A 228 VVDS 231 (298)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8754
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=86.31 E-value=4.8 Score=36.24 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE---
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI--- 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l--- 313 (411)
+|++.+.++|+|.+.++..... ...+.++.++++ |....+=....+. .++.+.+. +|.+
T Consensus 78 ~~i~~~~~aGad~itvH~Ea~~-------------~~~~~i~~i~~~--G~k~gval~p~t~~e~l~~~l~~-~D~Vl~m 141 (228)
T 3ovp_A 78 QWVKPMAVAGANQYTFHLEATE-------------NPGALIKDIREN--GMKVGLAIKPGTSVEYLAPWANQ-IDMALVM 141 (228)
T ss_dssp GGHHHHHHHTCSEEEEEGGGCS-------------CHHHHHHHHHHT--TCEEEEEECTTSCGGGTGGGGGG-CSEEEEE
T ss_pred HHHHHHHHcCCCEEEEccCCch-------------hHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHhcc-CCeEEEe
Confidence 4667778899999988743221 135668888887 4555554544443 45444442 4444
Q ss_pred EcCCC--------CC---HHHHHHHhCC-CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHH
Q 015201 314 GLDWT--------VD---MADGRKRLGN-DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEE 381 (411)
Q Consensus 314 ~~d~~--------~d---i~~~~~~~g~-~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~E 381 (411)
+++.. .. +.++++..++ .+.+-|||++ +.++++++.+. ..+|.++.- +...-|.+
T Consensus 142 sv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~-----------~t~~~~~~aGA-d~~VvGsaI-f~a~dp~~ 208 (228)
T 3ovp_A 142 TVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGP-----------DTVHKCAEAGA-NMIVSGSAI-MRSEDPRS 208 (228)
T ss_dssp SSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCST-----------TTHHHHHHHTC-CEEEESHHH-HTCSCHHH
T ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCH-----------HHHHHHHHcCC-CEEEEeHHH-hCCCCHHH
Confidence 22211 12 5566666543 4778899987 33344455443 366666531 11233678
Q ss_pred HHHHHHHHHHhcC
Q 015201 382 AVAHFFEVGKSMK 394 (411)
Q Consensus 382 ni~a~~~a~~~yg 394 (411)
+++.+.+.++++-
T Consensus 209 ~~~~l~~~~~~~~ 221 (228)
T 3ovp_A 209 VINLLRNVCSEAA 221 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877763
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=86.02 E-value=21 Score=32.76 Aligned_cols=148 Identities=9% Similarity=0.002 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcC--CC
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGT--GV 310 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~--g~ 310 (411)
.+..++.++.+++.|||.|-++-.. ..++++.- ++|++..+++.. ++|+.+ +.... .++.-.+. |.
T Consensus 24 ~~~a~~~a~~~v~~GAdiIDIg~g~-~~v~~~ee-------~~rvv~~i~~~~-~~pisI--DT~~~~v~~aAl~a~~Ga 92 (262)
T 1f6y_A 24 PAPVQEWARRQEEGGARALDLNVGP-AVQDKVSA-------MEWLVEVTQEVS-NLTLCL--DSTNIKAIEAGLKKCKNR 92 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEBCC-----CHHHH-------HHHHHHHHHTTC-CSEEEE--ECSCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCCCcEEEECCCC-CCCChHHH-------HHHHHHHHHHhC-CCeEEE--eCCCHHHHHHHHhhCCCC
Confidence 3566777889999999999776522 23454332 234444554432 566554 33333 45555555 99
Q ss_pred cEEE-cCCCC----CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHh---C-C-CCeEEeCCCC-CCCC--
Q 015201 311 DVIG-LDWTV----DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCA---G-S-RGHILNLGHG-VLVG-- 377 (411)
Q Consensus 311 d~l~-~d~~~----di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~---~-~-~gfIls~gc~-i~~~-- 377 (411)
++++ +.... .+..+.+++|-.+++|-. +..-.-.|.++..+..++.++.+ | + ..+|+-||.+ +..+
T Consensus 93 ~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~-~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~ 171 (262)
T 1f6y_A 93 AMINSTNAEREKVEKLFPLAVEHGAALIGLTM-NKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQD 171 (262)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCEEEEESC-CSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTT
T ss_pred CEEEECCCCcccHHHHHHHHHHhCCcEEEEcC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChH
Confidence 9986 43221 345566778877777642 21111124455544445554433 3 3 5799999985 3222
Q ss_pred CcHHHHHHHHHHHHhc
Q 015201 378 TPEEAVAHFFEVGKSM 393 (411)
Q Consensus 378 tp~Eni~a~~~a~~~y 393 (411)
...+.++++-+..+.+
T Consensus 172 ~~~~~l~~l~~l~~~~ 187 (262)
T 1f6y_A 172 HAPEVLKTLQQIKMLA 187 (262)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2345555554433325
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=1.3 Score=42.54 Aligned_cols=144 Identities=11% Similarity=0.058 Sum_probs=72.8
Q ss_pred HHHHHHHHH-HHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHh--hCCCCCEEEEecCCcccHhHHhcCCC
Q 015201 234 TQAIADYII-YQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRT--KCPETPIVLYINGNGGFLERMKGTGV 310 (411)
Q Consensus 234 ~d~~~~~~~-~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~--~~~g~~~~~H~CG~~~~l~~~~e~g~ 310 (411)
++..+++++ .+.++|++.|-++ ....||+.|+ +.+++.+.... ..++..+..+.-+ ...++...+.|+
T Consensus 40 ~~~k~~i~~~~L~~~Gv~~IE~g---~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~i~~l~~~-~~~i~~a~~~g~ 110 (337)
T 3ble_A 40 TSEKLNIAKFLLQKLNVDRVEIA---SARVSKGELE-----TVQKIMEWAATEQLTERIEILGFVDG-NKTVDWIKDSGA 110 (337)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE---ETTSCTTHHH-----HHHHHHHHHHHTTCGGGEEEEEESST-THHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEe---CCCCChhHHH-----HHHHHHhhhhhhccCCCCeEEEEccc-hhhHHHHHHCCC
Confidence 455567777 8888999988553 2233675543 23333332110 1113333333222 225788888999
Q ss_pred cEEEcCC-----------CCCH----------HHHHHHhCCCeeEEccCCcCcc---CCCHHHHHHHHHHHHHHhCCCCe
Q 015201 311 DVIGLDW-----------TVDM----------ADGRKRLGNDISVQGNVDPACL---FSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 311 d~l~~d~-----------~~di----------~~~~~~~g~~~~l~G~vd~~~L---~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
+.+.+-. ..+. .+..+..|.+ +.+++.. .. .-+++.+.+.++++.+.+ -.
T Consensus 111 ~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~--v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G---a~ 184 (337)
T 3ble_A 111 KVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLK--INVYLED-WSNGFRNSPDYVKSLVEHLSKEH---IE 184 (337)
T ss_dssp CEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCE--EEEEEET-HHHHHHHCHHHHHHHHHHHHTSC---CS
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE--EEEEEEE-CCCCCcCCHHHHHHHHHHHHHcC---CC
Confidence 9986421 1121 1122334543 3333221 11 136777777766655543 23
Q ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHhc
Q 015201 367 ILNLGHGVLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 367 Ils~gc~i~~~tp~Eni~a~~~a~~~y 393 (411)
.++...++.. ..|+.+..+++++++.
T Consensus 185 ~i~l~DT~G~-~~P~~v~~lv~~l~~~ 210 (337)
T 3ble_A 185 RIFLPDTLGV-LSPEETFQGVDSLIQK 210 (337)
T ss_dssp EEEEECTTCC-CCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCC-cCHHHHHHHHHHHHHh
Confidence 3444334433 3466688888877764
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=85.92 E-value=10 Score=35.89 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=.+-+.|..+.|.+.. ++|+. ++-... .++.-.+.|
T Consensus 33 ~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~-----~vpiS--IDT~~~~Va~aAl~aG 105 (314)
T 2vef_A 33 EQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKES-----DVLIS--IDTWKSQVAEAALAAG 105 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHC-----CCEEE--EECSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-----CceEE--EeCCCHHHHHHHHHcC
Confidence 445677888999999999887632 225777666666777776665432 55543 343333 467777789
Q ss_pred CcEEE-cCC---CCCHHHHHHHhCCCeeEEcc----CCcC--cc------CC---C-----------HHH-HHHHHHHHH
Q 015201 310 VDVIG-LDW---TVDMADGRKRLGNDISVQGN----VDPA--CL------FS---P-----------LPA-LTDEIQRVV 358 (411)
Q Consensus 310 ~d~l~-~d~---~~di~~~~~~~g~~~~l~G~----vd~~--~L------~g---t-----------~ee-V~~ev~~~i 358 (411)
++++| +.. ..++.++.+++|-.+++|-. .+.. .+ .| | .++ |.+..++.+
T Consensus 106 a~iINDVsg~~~d~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i 185 (314)
T 2vef_A 106 ADLVNDITGLMGDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERAL 185 (314)
T ss_dssp CCEEEETTTTCSCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCChHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHH
Confidence 99996 422 24788888888877888732 1111 00 00 1 344 344455544
Q ss_pred HHh---C-C-CCeEEeCCCCCCCCCcHHHHHHHH
Q 015201 359 KCA---G-S-RGHILNLGHGVLVGTPEEAVAHFF 387 (411)
Q Consensus 359 ~~~---~-~-~gfIls~gc~i~~~tp~Eni~a~~ 387 (411)
+.+ | + ...||-||-++... ..+|+..+-
T Consensus 186 ~~a~~~GI~~~~IilDPGiGF~kt-~~~nl~ll~ 218 (314)
T 2vef_A 186 ARAAEAGIAPENILLDPGIGFGLT-KKENLLLLR 218 (314)
T ss_dssp HHHHHHTCCGGGEEEECCTTSSCC-HHHHHHHHH
T ss_pred HHHHHcCCChhhEEEeCCCCcccc-hHHHHHHHH
Confidence 433 3 3 57999999876543 446655553
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=85.79 E-value=10 Score=36.69 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------ccHhHHhcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------GFLERMKGT 308 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------~~l~~~~e~ 308 (411)
..+|++.+.++|...|+. ++.+|+.-.+-....++++++.+++. |..+++-+-... ..+..+.++
T Consensus 19 ~~~yi~~a~~~Gf~~IFT-----SL~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DIsp~~l~~Lg~s~~dl~~~~~l 91 (372)
T 2p0o_A 19 TIIYIKKMKALGFDGIFT-----SLHIPEDDTSLYRQRLTDLGAIAKAE--KMKIMVDISGEALKRAGFSFDELEPLIEL 91 (372)
T ss_dssp HHHHHHHHHHTTCCEEEE-----EECCC-----CHHHHHHHHHHHHHHH--TCEEEEEECHHHHHTTTCBTTBCHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEc-----cCCccCCChHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHc
Confidence 447888899999999853 46777777778889999999999998 666676665431 246788999
Q ss_pred CCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-C---CCCcHHHHH
Q 015201 309 GVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-L---VGTPEEAVA 384 (411)
Q Consensus 309 g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~---~~tp~Eni~ 384 (411)
|++++=+|...+..+..+.--+ +.+.=|..+ + |+++ +.++++...+..-+.+. |+. | .|-+.+-+.
T Consensus 92 Gi~glRLD~Gf~~~eia~ls~n-lkIeLNASt--i--~~~~----l~~l~~~~~n~~~l~a~-HNFYPr~~TGLs~~~f~ 161 (372)
T 2p0o_A 92 GVTGLRMDYGITIEQMAHASHK-IDIGLNAST--I--TLEE----VAELKAHQADFSRLEAW-HNYYPRPETGIGTTFFN 161 (372)
T ss_dssp TCCEEEECSSCCHHHHHHHHTT-SEEEEETTT--C--CHHH----HHHHHHTTCCGGGEEEE-CCCCCSTTCSBCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHhcC-CEEEEECcc--C--CHHH----HHHHHHcCCChHHeEEe-eccCCCCCCCCCHHHHH
Confidence 9999999999999988886443 433322222 1 3443 45556655553334433 555 3 356889999
Q ss_pred HHHHHHHhcCC
Q 015201 385 HFFEVGKSMKY 395 (411)
Q Consensus 385 a~~~a~~~yg~ 395 (411)
..-+..|+||-
T Consensus 162 ~~n~~~k~~Gi 172 (372)
T 2p0o_A 162 EKNRWLKELGL 172 (372)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 99999999983
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=4.9 Score=39.74 Aligned_cols=140 Identities=14% Similarity=0.065 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+--+++++.+.++|++.|-++-+ -.||++|+- ++.+.+.+....+..+.-.+..-++...+.|++.++
T Consensus 61 eeKl~Ia~~L~~~Gv~~IEvG~P---~asp~d~~~---------~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V~ 128 (423)
T 3ivs_A 61 EKKIQIAKALDNFGVDYIELTSP---VASEQSRQD---------CEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVD 128 (423)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCT---TSCHHHHHH---------HHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeec---ccCHHHHHH---------HHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEEE
Confidence 44456778888999999876432 357877643 233333321222333433443346778889999886
Q ss_pred cC----C-------CCCHH----------HHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 315 LD----W-------TVDMA----------DGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 315 ~d----~-------~~di~----------~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
+- + ..+.. +..+..|.++.+ ... .....+++.+.+-++.+.+.+ ... ++...+
T Consensus 129 i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~--~~e-da~r~d~~~~~~v~~~~~~~G-a~~--i~l~DT 202 (423)
T 3ivs_A 129 VVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRF--SSE-DSFRSDLVDLLSLYKAVDKIG-VNR--VGIADT 202 (423)
T ss_dssp EEEEC-------------CHHHHHHHHHHHHHHTTTCEEEE--EEE-SGGGSCHHHHHHHHHHHHHHC-CSE--EEEEET
T ss_pred EEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEE--EEc-cCcCCCHHHHHHHHHHHHHhC-CCc--cccCCc
Confidence 41 1 12221 112224543322 211 113468888877777777653 323 443333
Q ss_pred CCCCCcHHHHHHHHHHHHhc
Q 015201 374 VLVGTPEEAVAHFFEVGKSM 393 (411)
Q Consensus 374 i~~~tp~Eni~a~~~a~~~y 393 (411)
+.. ..|+.+..+++.+++.
T Consensus 203 vG~-~~P~~v~~lv~~l~~~ 221 (423)
T 3ivs_A 203 VGC-ATPRQVYDLIRTLRGV 221 (423)
T ss_dssp TSC-CCHHHHHHHHHHHHHH
T ss_pred cCc-CCHHHHHHHHHHHHhh
Confidence 433 3456688888887764
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=85.54 E-value=4.5 Score=38.25 Aligned_cols=138 Identities=9% Similarity=0.022 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCC----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc----cHhHHh
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWG----GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG----FLERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~----~l~~~~ 306 (411)
+...++++.+++.|||.|-+.-.+. .-+|++.=.+ +++.+.+.. ++|+.+--||+.. .++.-.
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~--------vV~~v~~~~-~vplsI~DT~~~~~~~~V~eaal 144 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAE--------VCKAVADAI-DVPLMIIGCGVEEKDAEIFPVIG 144 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHH--------HHHHHHHHC-SSCEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHH--------HHHHHHHhC-CceEEEECCCCCCCCHHHHHHHH
Confidence 4566778888999999998876322 2588876555 344444433 6787665677754 256666
Q ss_pred cCCCc---EEE-cCCC--CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC-C-CCeEEeCCCCCCC-C
Q 015201 307 GTGVD---VIG-LDWT--VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG-S-RGHILNLGHGVLV-G 377 (411)
Q Consensus 307 e~g~d---~l~-~d~~--~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~-~-~gfIls~gc~i~~-~ 377 (411)
+.|.+ .++ +... ..+..+..++|-.+++|..- +.+...+.+.++. ..| + ...|+-||.+... +
T Consensus 145 ~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~-------dv~~l~~~~~~a~-~~Gi~~e~IilDPg~g~~g~~ 216 (310)
T 2h9a_B 145 EALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAPL-------DINLSKQLNIMIM-EMNLAPNRIIMDPLIGALGYG 216 (310)
T ss_dssp HHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECSS-------CHHHHHHHHHHHH-TTTCCGGGEEEECCCCCTTTT
T ss_pred HhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEEChh-------HHHHHHHHHHHHH-HCCCChhhEEEeCCCccccCc
Confidence 77877 664 4322 23555567788777776532 2344444444444 333 4 6799999987422 1
Q ss_pred --CcHHHHHHHHHH
Q 015201 378 --TPEEAVAHFFEV 389 (411)
Q Consensus 378 --tp~Eni~a~~~a 389 (411)
-..+|+..+..+
T Consensus 217 ~e~~~~~l~~ir~~ 230 (310)
T 2h9a_B 217 IEYSYSIIERMRLG 230 (310)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHh
Confidence 123445555543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.46 E-value=14 Score=34.59 Aligned_cols=125 Identities=17% Similarity=0.140 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
+..+.++...+..++++|++..+++. + ++-.++.++...++|+|
T Consensus 58 Er~~v~~~~~~~~~grvpviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gad 101 (300)
T 3eb2_A 58 QREAVVRATIEAAQRRVPVVAGVAST-----------S-------------------------VADAVAQAKLYEKLGAD 101 (300)
T ss_dssp HHHHHHHHHHHHHTTSSCBEEEEEES-----------S-------------------------HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCC-----------C-------------------------HHHHHHHHHHHHHcCCC
Confidence 33455556667777888888766431 0 13335667777889999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-cc------cHhHHhcCCCcEEEc-CCCCCHH
Q 015201 251 CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-GG------FLERMKGTGVDVIGL-DWTVDMA 322 (411)
Q Consensus 251 ~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~~------~l~~~~e~g~d~l~~-d~~~di~ 322 (411)
++.+.-++-.-.|++ =+.-|++.+.+.. ++|++++.+-. +. .+..+.+.+ +++.+ +...|+.
T Consensus 102 avlv~~P~y~~~~~~----~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~ 171 (300)
T 3eb2_A 102 GILAILEAYFPLKDA----QIESYFRAIADAV-----EIPVVIYTNPQFQRSDLTLDVIARLAEHP-RIRYIKDASTNTG 171 (300)
T ss_dssp EEEEEECCSSCCCHH----HHHHHHHHHHHHC-----SSCEEEEECTTTCSSCCCHHHHHHHHTST-TEEEEEECSSBHH
T ss_pred EEEEcCCCCCCCCHH----HHHHHHHHHHHHC-----CCCEEEEECccccCCCCCHHHHHHHHcCC-CEEEEEcCCCCHH
Confidence 998877755444553 3556888888876 47887777532 21 134445543 55555 3334554
Q ss_pred H---HHHHhCCCeeEEccCCcC
Q 015201 323 D---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 323 ~---~~~~~g~~~~l~G~vd~~ 341 (411)
. +.+..+++..+..|-|..
T Consensus 172 ~~~~~~~~~~~~f~v~~G~d~~ 193 (300)
T 3eb2_A 172 RLLSIINRCGDALQVFSASAHI 193 (300)
T ss_dssp HHHHHHHHHGGGSEEEECTTSC
T ss_pred HHHHHHHHcCCCeEEEeCcHHH
Confidence 4 444455555555555543
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=85.44 E-value=6.7 Score=34.71 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=75.9
Q ss_pred HHHHHHHHhCCCEEEEe-c-CCCCCCCHHHHHHHHH--------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--
Q 015201 239 DYIIYQVESGAHCIQIF-D-SWGGQLPPHMWEQWSE--------------PYIREIVSLVRTKCPETPIVLYINGNGG-- 300 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~-D-~~~~~iSp~~f~ef~~--------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~-- 300 (411)
+-+++..++|+|.+-+- . .+--.++|+.-++... +-..++.+.+.+. +. -+++.+|+..
T Consensus 13 eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~--~l-d~vQLHG~e~~~ 89 (205)
T 1nsj_A 13 EDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYV--QL-NAVQLHGEEPIE 89 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHH--TC-SEEEECSCCCHH
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhh--CC-CEEEECCCCCHH
Confidence 34556778999987432 2 2333899999888753 2234555556555 22 2566677653
Q ss_pred cHhHHhcCCCcEE---EcCCCCCHHHHHHH----------------------------h---CCCeeEEccCCcCccCCC
Q 015201 301 FLERMKGTGVDVI---GLDWTVDMADGRKR----------------------------L---GNDISVQGNVDPACLFSP 346 (411)
Q Consensus 301 ~l~~~~e~g~d~l---~~d~~~di~~~~~~----------------------------~---g~~~~l~G~vd~~~L~gt 346 (411)
.+..++. ++.+| ++....|+..+.+. + .....+.||+ |
T Consensus 90 ~~~~l~~-~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~~~~~~p~~LAGGL-------~ 161 (205)
T 1nsj_A 90 LCRKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGL-------N 161 (205)
T ss_dssp HHHHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGSSCEEEESSC-------C
T ss_pred HHHHHhc-CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhhhcCCCcEEEECCC-------C
Confidence 2343321 22222 23222222221111 0 1123333333 5
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC-CcHHHHHHHHHHHHh
Q 015201 347 LPALTDEIQRVVKCAGSRGHILNLGHGVLVG-TPEEAVAHFFEVGKS 392 (411)
Q Consensus 347 ~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~-tp~Eni~a~~~a~~~ 392 (411)
||.|.+.++ ..++-|.-+++|=...+| -+++.|++|+++++.
T Consensus 162 peNV~~ai~----~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~~~r~ 204 (205)
T 1nsj_A 162 PENVRSAID----VVRPFAVDVSSGVEAFPGKKDHDSIKMFIKNAKG 204 (205)
T ss_dssp TTTHHHHHH----HHCCSEEEESGGGEEETTEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----hcCCCEEEECCceecCCCCcCHHHHHHHHHHHhh
Confidence 555554443 346678888888776445 588999999999885
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=5.2 Score=36.11 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE---
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI--- 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l--- 313 (411)
+|++.+.++|||.+.+.-... -+...++++.++++ |....+-.+..+. .++.+.+ ++|.+
T Consensus 71 ~~i~~~~~aGAd~itvh~Ea~------------~~~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~-~~D~Vlvm 135 (231)
T 3ctl_A 71 DYIAQLARAGADFITLHPETI------------NGQAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIH-KADKITVM 135 (231)
T ss_dssp GTHHHHHHHTCSEEEECGGGC------------TTTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGG-GCSEEEEE
T ss_pred HHHHHHHHcCCCEEEECcccC------------CccHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHh-cCCEEEEe
Confidence 366788899999998752210 12345788899987 5555555544433 3544444 46665
Q ss_pred EcCCC-----C------CHHHHHHHhC-----CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEe-CCCCCCC
Q 015201 314 GLDWT-----V------DMADGRKRLG-----NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILN-LGHGVLV 376 (411)
Q Consensus 314 ~~d~~-----~------di~~~~~~~g-----~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls-~gc~i~~ 376 (411)
+++.. . .+.++++... -.+.+-|||++. | ++++++.+ ...+|.+ ++--=.+
T Consensus 136 sV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~----~-------~~~~~~aG-Ad~~V~G~saif~~~ 203 (231)
T 3ctl_A 136 TVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQA----T-------YEKLMAAG-ADVFIVGTSGLFNHA 203 (231)
T ss_dssp SSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTT----T-------HHHHHHHT-CCEEEECTTTTGGGC
T ss_pred eeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHH----H-------HHHHHHcC-CCEEEEccHHHhCCC
Confidence 23221 1 1355665542 246667999873 3 23344443 3477777 4421122
Q ss_pred CCcHHHHHHHHHHHHh
Q 015201 377 GTPEEAVAHFFEVGKS 392 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~~ 392 (411)
+.|.++++.+.+..++
T Consensus 204 d~~~~~~~~l~~~~~~ 219 (231)
T 3ctl_A 204 ENIDEAWRIMTAQILA 219 (231)
T ss_dssp SSHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHH
Confidence 3367889988877665
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=85.29 E-value=4.5 Score=37.97 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=.+-+.|..+.+.+ . ++|+.+ +-... .++.-.+.|
T Consensus 52 ~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~----~--~vpiSI--DT~~~~Va~aAl~aG 123 (294)
T 2dqw_A 52 ERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLS----L--GVPVSV--DTRKPEVAEEALKLG 123 (294)
T ss_dssp -CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHT----T--CSCEEE--ECSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh----C--CCeEEE--ECCCHHHHHHHHHhC
Confidence 345567788999999999887532 2367777666667777666643 2 466543 33332 456666679
Q ss_pred CcEEE-cCC--CCCHHHHHHHhCCCeeEEccC--CcCcc-----CCCH-HHHHHHHHHHHHHhCC---CCeEEeCCCCCC
Q 015201 310 VDVIG-LDW--TVDMADGRKRLGNDISVQGNV--DPACL-----FSPL-PALTDEIQRVVKCAGS---RGHILNLGHGVL 375 (411)
Q Consensus 310 ~d~l~-~d~--~~di~~~~~~~g~~~~l~G~v--d~~~L-----~gt~-eeV~~ev~~~i~~~~~---~gfIls~gc~i~ 375 (411)
++++| +.. ..++.++.+++|-.+++|-.= .|..+ +.+. +++.+..++.++.+.. ...|+-||-++.
T Consensus 124 a~iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~ 203 (294)
T 2dqw_A 124 AHLLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFG 203 (294)
T ss_dssp CSEEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSS
T ss_pred CCEEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcc
Confidence 99986 322 224666677788777776531 12222 2222 6777777777776532 378999998763
Q ss_pred CCCcHHHHHHH
Q 015201 376 VGTPEEAVAHF 386 (411)
Q Consensus 376 ~~tp~Eni~a~ 386 (411)
.+..+|+..+
T Consensus 204 -kt~~~n~~ll 213 (294)
T 2dqw_A 204 -KLLEHNLALL 213 (294)
T ss_dssp -CCHHHHHHHH
T ss_pred -cCHHHHHHHH
Confidence 3445665543
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=85.24 E-value=24 Score=32.92 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 72 ~~v~~~~~~~~~grvpviaGvg~~-----------s-------------------------t~~ai~la~~A~~~Gadav 115 (304)
T 3cpr_A 72 LELLKAVREEVGDRAKLIAGVGTN-----------N-------------------------TRTSVELAEAAASAGADGL 115 (304)
T ss_dssp HHHHHHHHHHHTTTSEEEEECCCS-----------C-------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEecCCCC-----------C-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 344555566677789988776441 0 2334566777788999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMADG 324 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~~ 324 (411)
.+.-++-.-.|+ +=+.-|++.+.+.. ++|++++.. |.. . .+..+.+.+ +++.+ +..-|+...
T Consensus 116 lv~~P~y~~~~~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKdssgd~~~~ 185 (304)
T 3cpr_A 116 LVVTPYYSKPSQ----EGLLAHFGAIAAAT-----EVPICLYDIPGRSGIPIESDTMRRLSELP-TILAVXDAKGDLVAA 185 (304)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSSCCCHHHHHHHTTST-TEEEEEECSCCHHHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHcCC-CEEEEecCCCCHHHH
Confidence 887765433453 55677888888765 478877764 432 2 234455543 56555 444466555
Q ss_pred HH
Q 015201 325 RK 326 (411)
Q Consensus 325 ~~ 326 (411)
.+
T Consensus 186 ~~ 187 (304)
T 3cpr_A 186 TS 187 (304)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=85.11 E-value=10 Score=36.23 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecC--CC------CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE-ecC--CcccH
Q 015201 234 TQAIADYIIYQVESGAHCIQIFDS--WG------GQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY-ING--NGGFL 302 (411)
Q Consensus 234 ~d~~~~~~~~~~e~G~d~i~i~D~--~~------~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H-~CG--~~~~l 302 (411)
++..+++++++.++|+|.|-++-. |. ++-..+.|+ .++++. +..++.++... .-| ....+
T Consensus 29 ~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e-----~l~~i~----~~~~~~~i~~l~~p~~~~~~~i 99 (345)
T 1nvm_A 29 LDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLE-----YIEAVA----GEISHAQIATLLLPGIGSVHDL 99 (345)
T ss_dssp HHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHH-----HHHHHH----TTCSSSEEEEEECBTTBCHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHH-----HHHHHH----hhCCCCEEEEEecCCcccHHHH
Confidence 355667788888899999877411 21 221222222 233333 33346666655 222 22357
Q ss_pred hHHhcCCCcEEEcC-CCC------CHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCC
Q 015201 303 ERMKGTGVDVIGLD-WTV------DMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVL 375 (411)
Q Consensus 303 ~~~~e~g~d~l~~d-~~~------di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~ 375 (411)
+...+.|++.+.+- ... +..+..+..|- .+.+.+... ..-++|.+.+-++++.+.+ -++++...++.
T Consensus 100 ~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~--~v~~~~~~a-~~~~~e~~~~ia~~~~~~G---a~~i~l~DT~G 173 (345)
T 1nvm_A 100 KNAYQAGARVVRVATHCTEADVSKQHIEYARNLGM--DTVGFLMMS-HMIPAEKLAEQGKLMESYG---ATCIYMADSGG 173 (345)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTC--EEEEEEEST-TSSCHHHHHHHHHHHHHHT---CSEEEEECTTC
T ss_pred HHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCC--EEEEEEEeC-CCCCHHHHHHHHHHHHHCC---CCEEEECCCcC
Confidence 88888999998642 111 22333344563 344443111 2357788877777776653 45666554444
Q ss_pred CCCcHHHHHHHHHHHHhcC
Q 015201 376 VGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 376 ~~tp~Eni~a~~~a~~~yg 394 (411)
..+ |+.+..+++++++.-
T Consensus 174 ~~~-P~~v~~lv~~l~~~~ 191 (345)
T 1nvm_A 174 AMS-MNDIRDRMRAFKAVL 191 (345)
T ss_dssp CCC-HHHHHHHHHHHHHHS
T ss_pred ccC-HHHHHHHHHHHHHhc
Confidence 334 778999999988764
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=84.97 E-value=24 Score=32.65 Aligned_cols=120 Identities=12% Similarity=0.165 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 56 ~~v~~~~~~~~~gr~pviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gadav 99 (289)
T 2yxg_A 56 KKVIEKVVDVVNGRVQVIAGAGSN-----------C-------------------------TEEAIELSVFAEDVGADAV 99 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEEECCCS-----------S-------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCCC-----------C-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 344555666677789998776441 0 1333566777888999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CC-cc--cHhHHh-cCCCcEEEc-CCCCCHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GN-GG--FLERMK-GTGVDVIGL-DWTVDMAD 323 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~-~~--~l~~~~-e~g~d~l~~-d~~~di~~ 323 (411)
.+.-++-.-.|. +-+.-|++++.+.. ++|++++.. |. .. .+..+. +.+ ++..+ +..-|+..
T Consensus 100 lv~~P~y~~~s~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nivgiK~s~gd~~~ 169 (289)
T 2yxg_A 100 LSITPYYNKPTQ----EGLRKHFGKVAESI-----NLPIVLYNVPSRTAVNLEPKTVKLLAEEYS-NISAVKEANPNLSQ 169 (289)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECCSCTHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCcCCCHHHHHHHHHhCC-CEEEEEeCCCCHHH
Confidence 887765443454 45666778888765 478888774 32 22 244455 543 55555 33345444
Q ss_pred H---HHHhCCCeeEEccCCc
Q 015201 324 G---RKRLGNDISVQGNVDP 340 (411)
Q Consensus 324 ~---~~~~g~~~~l~G~vd~ 340 (411)
. .+.. +..+..|-|.
T Consensus 170 ~~~~~~~~--~f~v~~G~d~ 187 (289)
T 2yxg_A 170 VSELIHDA--KITVLSGNDE 187 (289)
T ss_dssp HHHHHHHT--CSEEEESCGG
T ss_pred HHHHHHhC--CeEEEECcHH
Confidence 3 4433 3444444443
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=84.73 E-value=16 Score=34.31 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CC-cc--cHhHHh-cC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GN-GG--FLERMK-GT 308 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~-~~--~l~~~~-e~ 308 (411)
.++.++...++|+|++.+.-++-.-.|+ +=+.-|++++.+.. ++|++++.. |. .. .+..+. +.
T Consensus 96 ai~la~~A~~~Gadavlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~ 166 (306)
T 1o5k_A 96 TLKLVKQAEKLGANGVLVVTPYYNKPTQ----EGLYQHYKYISERT-----DLGIVVYNVPGRTGVNVLPETAARIAADL 166 (306)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCCCH----HHHHHHHHHHHTTC-----SSCEEEEECHHHHSCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCccccCcCCCHHHHHHHHHhC
Confidence 4567777888999999887765443454 44566777777654 578888774 42 22 244455 54
Q ss_pred CCcEEEc-CCCCCHHHHH---HHhCC---CeeEEccCCc
Q 015201 309 GVDVIGL-DWTVDMADGR---KRLGN---DISVQGNVDP 340 (411)
Q Consensus 309 g~d~l~~-d~~~di~~~~---~~~g~---~~~l~G~vd~ 340 (411)
+ ++..+ +..-|+.... +..++ +..+..|-|.
T Consensus 167 p-nIvgiKdssgd~~~~~~~~~~~~~~~~~f~v~~G~d~ 204 (306)
T 1o5k_A 167 K-NVVGIXEANPDIDQIDRTVSLTKQARSDFMVWSGNDD 204 (306)
T ss_dssp T-TEEEEEECCCCHHHHHHHHHHHHHHCTTCEEEESSGG
T ss_pred C-CEEEEeCCCCCHHHHHHHHHhcCCCCCcEEEEECcHH
Confidence 3 56555 3444655543 33443 4555555554
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=84.73 E-value=2.4 Score=40.05 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-h--HHhcCCCc
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-E--RMKGTGVD 311 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~--~~~e~g~d 311 (411)
++.+.++.+.++|+|.|.+.|..| .+.|+.+.++ ++.+++..|++++-+|.+.+... + . .-.+.|++
T Consensus 158 ~~~~~~~~~~~~Ga~~i~l~DT~G-~~~P~~v~~l--------v~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~ 228 (307)
T 1ydo_A 158 QVIRLSEALFEFGISELSLGDTIG-AANPAQVETV--------LEALLARFPANQIALHFHDTRGTALANMVTALQMGIT 228 (307)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSSC-CCCHHHHHHH--------HHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCC
Confidence 444555667788999999988766 4788887664 44555544457889998766542 2 2 23357999
Q ss_pred EEEc
Q 015201 312 VIGL 315 (411)
Q Consensus 312 ~l~~ 315 (411)
.+..
T Consensus 229 ~vd~ 232 (307)
T 1ydo_A 229 VFDG 232 (307)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8853
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=84.69 E-value=14 Score=33.06 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcEEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDVIG 314 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~l~ 314 (411)
.+.++.+.++|+|.+.+.|..+.... .+..-+++..+++.. ++|+++ .|.+. .++.+.+.|+|.+.
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~~~~--------~~~~~~~i~~i~~~~-~iPvi~--~Ggi~~~~~~~~~~~~Gad~V~ 102 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISATHEE--------RAILLDVVARVAERV-FIPLTV--GGGVRSLEDARKLLLSGADKVS 102 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSSTTC--------HHHHHHHHHHHHTTC-CSCEEE--ESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEcCCccccC--------ccccHHHHHHHHHhC-CCCEEE--ECCcCCHHHHHHHHHcCCCEEE
Confidence 35667778899999999886654322 122334455565553 678654 34443 46778888999998
Q ss_pred cCC-----CCCHHHHHHHhCCC-eeEEccCCcC------c--cCC-C---HHHHHHHHHHHHHHhCCCCeEEeC-C-CCC
Q 015201 315 LDW-----TVDMADGRKRLGND-ISVQGNVDPA------C--LFS-P---LPALTDEIQRVVKCAGSRGHILNL-G-HGV 374 (411)
Q Consensus 315 ~d~-----~~di~~~~~~~g~~-~~l~G~vd~~------~--L~g-t---~eeV~~ev~~~i~~~~~~gfIls~-g-c~i 374 (411)
+.. ...+.++.+.++.+ +.+. +|.. . ..| . .....+.++++.+. +-+++++.. + .+.
T Consensus 103 lg~~~l~~p~~~~~~~~~~~~~~i~~~--~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~-G~~~i~~~~~~~~g~ 179 (252)
T 1ka9_F 103 VNSAAVRRPELIRELADHFGAQAVVLA--IDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVEL-GAGEILLTSMDRDGT 179 (252)
T ss_dssp ECHHHHHCTHHHHHHHHHHCGGGEEEE--EEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHH-TCCEEEEEETTTTTT
T ss_pred EChHHHhCcHHHHHHHHHcCCCcEEEE--EEEecCCCCEEEEECCCccccCCcHHHHHHHHHHc-CCCEEEEecccCCCC
Confidence 743 11267778888743 3332 3331 1 122 1 12334445555443 445666653 2 123
Q ss_pred CCCCcHHHHHHHHHHH
Q 015201 375 LVGTPEEAVAHFFEVG 390 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a~ 390 (411)
..+.+.+.++.+.+.+
T Consensus 180 ~~g~~~~~i~~l~~~~ 195 (252)
T 1ka9_F 180 KEGYDLRLTRMVAEAV 195 (252)
T ss_dssp CSCCCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHc
Confidence 3455677777766543
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=84.49 E-value=5 Score=40.23 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hH--HhcCCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ER--MKGTGV 310 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~--~~e~g~ 310 (411)
++.++.++.+.++|+|.|.+.|..|. +.|....+. ++.+++.. ++++-+|.+.+... + .. -.+.|+
T Consensus 158 e~~~~~a~~l~~~Gad~I~l~DT~G~-~~P~~v~~l--------v~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa 227 (464)
T 2nx9_A 158 QTWVDVAQQLAELGVDSIALKDMAGI-LTPYAAEEL--------VSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGV 227 (464)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSC-CCHHHHHHH--------HHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCC-cCHHHHHHH--------HHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 34555666777899999999887766 678776654 44444443 57899999877652 3 33 346899
Q ss_pred cEEE
Q 015201 311 DVIG 314 (411)
Q Consensus 311 d~l~ 314 (411)
+.+.
T Consensus 228 ~~VD 231 (464)
T 2nx9_A 228 DRVD 231 (464)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9984
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=84.41 E-value=10 Score=33.75 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcC--CCcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGT--GVDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~--g~d~l~ 314 (411)
++++.+.++|+|++++++..... . +.+.++.+++. |..+++.....+. .+..+.+. ++|.+-
T Consensus 78 ~~i~~~~~agad~v~vH~~~~~~-~-----------~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl 143 (228)
T 1h1y_A 78 DYVEPLAKAGASGFTFHIEVSRD-N-----------WQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVL 143 (228)
T ss_dssp GGHHHHHHHTCSEEEEEGGGCTT-T-----------HHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEE
T ss_pred HHHHHHHHcCCCEEEECCCCccc-H-----------HHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEE
Confidence 45667778899999888654320 0 03456667766 5666655533332 45566665 778774
Q ss_pred cC--------CCC------CHHHHHHHh-CCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCc
Q 015201 315 LD--------WTV------DMADGRKRL-GNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTP 379 (411)
Q Consensus 315 ~d--------~~~------di~~~~~~~-g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp 379 (411)
+. ... .+.++++.. +-.+.+.|||++. +..++ ++. +--++|.++.--=.++ |
T Consensus 144 ~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~----ni~~~-------~~a-GaD~vvvGsai~~~~d-~ 210 (228)
T 1h1y_A 144 VMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS----TIDVA-------ASA-GANCIVAGSSIFGAAE-P 210 (228)
T ss_dssp EESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTT----THHHH-------HHH-TCCEEEESHHHHTSSC-H
T ss_pred EEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHH----HHHHH-------HHc-CCCEEEECHHHHCCCC-H
Confidence 31 111 145556655 3346778999883 33333 222 3346777655211223 6
Q ss_pred HHHHHHHHHHHHh
Q 015201 380 EEAVAHFFEVGKS 392 (411)
Q Consensus 380 ~Eni~a~~~a~~~ 392 (411)
.++++.+.+..++
T Consensus 211 ~~~~~~l~~~~~~ 223 (228)
T 1h1y_A 211 GEVISALRKSVEG 223 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888776664
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=84.32 E-value=11 Score=34.79 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC-CCCHHHHHHHH---------HHHHHHHHHHHHhhCCCCCEEEEecCCc------c
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGG-QLPPHMWEQWS---------EPYIREIVSLVRTKCPETPIVLYINGNG------G 300 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~-~iSp~~f~ef~---------~Py~k~i~~~i~~~~~g~~~~~H~CG~~------~ 300 (411)
..+.++.+.++|+|.|-+.-++.. +..-....+-. ..-.-++++.+++...++|+++-.--|. .
T Consensus 34 ~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 34 SLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 567778889999999987755442 33322222222 1122344555665423678766533221 2
Q ss_pred -cHhHHhcCCCcEEEc-CCC----CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeC-CCC
Q 015201 301 -FLERMKGTGVDVIGL-DWT----VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNL-GHG 373 (411)
Q Consensus 301 -~l~~~~e~g~d~l~~-d~~----~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~-gc~ 373 (411)
+++.+++.|+|++-+ |-. .++.+..+++|=+..+ -+.| .|++ +..+++.+.. .|||... -.+
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~--liaP----~t~~---eri~~i~~~~--~gfvY~vS~~G 182 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIF--IAPP----NADA---DTLKMVSEQG--EGYTYLLSRAG 182 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEC--EECT----TCCH---HHHHHHHHHC--CSCEEESCCCC
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEE--EECC----CCCH---HHHHHHHHhC--CCcEEEEecCC
Confidence 467788899999754 322 2344444455522111 1122 2333 2344444443 3676662 222
Q ss_pred CCCC-C-cHHHHHHHHHHHHhcC
Q 015201 374 VLVG-T-PEEAVAHFFEVGKSMK 394 (411)
Q Consensus 374 i~~~-t-p~Eni~a~~~a~~~yg 394 (411)
+... . -++.+..+++.+|++.
T Consensus 183 vTG~~~~~~~~~~~~v~~vr~~~ 205 (267)
T 3vnd_A 183 VTGTESKAGEPIENILTQLAEFN 205 (267)
T ss_dssp CC--------CHHHHHHHHHTTT
T ss_pred CCCCccCCcHHHHHHHHHHHHhc
Confidence 2211 1 2355778888888875
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=84.31 E-value=7.7 Score=36.65 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cH---hHHhcCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FL---ERMKGTG 309 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l---~~~~e~g 309 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++++. ..++.+.. .+|++.++..++. -+ ....+.|
T Consensus 34 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~v~~~~g---rvpViaGvg~~t~~ai~la~~A~~~G 106 (316)
T 3e96_A 34 HYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVR----RTVEYVHG---RALVVAGIGYATSTAIELGNAAKAAG 106 (316)
T ss_dssp HHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---CCcEEEEeCcCHHHHHHHHHHHHhcC
Confidence 3445566778899999987776664 799998877653 33444432 5789988854332 23 4455679
Q ss_pred CcEEEc
Q 015201 310 VDVIGL 315 (411)
Q Consensus 310 ~d~l~~ 315 (411)
+|++.+
T Consensus 107 adavlv 112 (316)
T 3e96_A 107 ADAVMI 112 (316)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998753
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=84.29 E-value=5.3 Score=38.78 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC---CCEEEEecCCccc-H-hHH--hc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE---TPIVLYINGNGGF-L-ERM--KG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g---~~~~~H~CG~~~~-l-~~~--~e 307 (411)
+++.+.++++.++|++.|.+.|..|. ..|..+.+++ +.+++..|+ .++-+|.+.+... + ..+ .+
T Consensus 157 ~~~~~~~~~~~~~Ga~~i~l~DT~G~-~~P~~~~~lv--------~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~ 227 (370)
T 3rmj_A 157 DFLAEICGAVIEAGATTINIPDTVGY-SIPYKTEEFF--------RELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALK 227 (370)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSC-CCHHHHHHHH--------HHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCccCC-cCHHHHHHHH--------HHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHH
Confidence 45556667778889999988887765 7788776653 344443333 6788999887652 3 333 36
Q ss_pred CCCcEEEc-----CC---CCCHHHHHH
Q 015201 308 TGVDVIGL-----DW---TVDMADGRK 326 (411)
Q Consensus 308 ~g~d~l~~-----d~---~~di~~~~~ 326 (411)
.|++.+.. .. ..++.++.-
T Consensus 228 aGa~~vd~tv~GlGeraGN~~lE~vv~ 254 (370)
T 3rmj_A 228 GGARQVECTVNGLGERAGNASVEEIVM 254 (370)
T ss_dssp TTCCEEEEBGGGCSSTTCBCBHHHHHH
T ss_pred hCCCEEEEeccccCcccccccHHHHHH
Confidence 79999853 22 346666543
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.26 E-value=3.2 Score=38.78 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H---hHHhcCCCcEEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L---ERMKGTGVDVIG 314 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l---~~~~e~g~d~l~ 314 (411)
++++.+.++|+|.|.+.|..| .++|+.+.++ ++.+++..+++|+.+|..-+... + -.-.+.|++.++
T Consensus 159 ~~~~~~~~~G~d~i~l~Dt~G-~~~P~~~~~l--------v~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd 229 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLGDTIG-RGTPDTVAAM--------LDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFD 229 (295)
T ss_dssp HHHHHHHHHTCSEEEEEETTS-CCCHHHHHHH--------HHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCCEEEecCCCC-CcCHHHHHHH--------HHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEE
Confidence 444566678999999998655 4789886654 44555544346789998655432 2 223457888876
Q ss_pred c
Q 015201 315 L 315 (411)
Q Consensus 315 ~ 315 (411)
.
T Consensus 230 ~ 230 (295)
T 1ydn_A 230 A 230 (295)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=84.10 E-value=6.9 Score=35.69 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhHHhcCCCcEE---
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLERMKGTGVDVI--- 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~~~e~g~d~l--- 313 (411)
+|++.+.++|+|.+.+...... ...+.++.++++ |....+=....+. .++.+.+ .+|.+
T Consensus 100 ~~i~~~~~aGAd~itvH~Ea~~-------------~~~~~i~~ir~~--G~k~Gvalnp~Tp~e~l~~~l~-~vD~VlvM 163 (246)
T 3inp_A 100 ALIESFAKAGATSIVFHPEASE-------------HIDRSLQLIKSF--GIQAGLALNPATGIDCLKYVES-NIDRVLIM 163 (246)
T ss_dssp HHHHHHHHHTCSEEEECGGGCS-------------CHHHHHHHHHTT--TSEEEEEECTTCCSGGGTTTGG-GCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEccccch-------------hHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHh-cCCEEEEe
Confidence 4667788999999988643321 245778888887 5555555655543 4555554 35554
Q ss_pred EcCCC--------C---CHHHHHHHhC-----CCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCC
Q 015201 314 GLDWT--------V---DMADGRKRLG-----NDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVG 377 (411)
Q Consensus 314 ~~d~~--------~---di~~~~~~~g-----~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~ 377 (411)
+++.. . .+.++++..+ -.+.+-|||++. | ++++++.+ ...+|.++.- +..+
T Consensus 164 sV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~----t-------i~~~~~aG-AD~~V~GSaI-f~a~ 230 (246)
T 3inp_A 164 SVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPY----N-------IAEIAVCG-VNAFVAGSAI-FNSD 230 (246)
T ss_dssp CSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTT----T-------HHHHHTTT-CCEEEESHHH-HTSS
T ss_pred eecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHH----H-------HHHHHHcC-CCEEEEehHH-hCCC
Confidence 23211 1 1445555442 236778999874 2 33444433 3466666431 1223
Q ss_pred CcHHHHHHHHHHHHh
Q 015201 378 TPEEAVAHFFEVGKS 392 (411)
Q Consensus 378 tp~Eni~a~~~a~~~ 392 (411)
-|.++++.+.+...+
T Consensus 231 dp~~~i~~l~~~i~~ 245 (246)
T 3inp_A 231 SYKQTIDKMRDELNK 245 (246)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 356788888777654
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=4.4 Score=41.36 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
++.++.++++.++|+|.|.+.|..|. +.|..+.+++ +.+++..| ++++-+|.+.+... + -.-.+.|
T Consensus 175 e~~~~~a~~l~~~Gad~I~L~DT~G~-~~P~~v~~lv--------~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAG 245 (539)
T 1rqb_A 175 EGYVKLAGQLLDMGADSIALKDMAAL-LKPQPAYDII--------KAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAG 245 (539)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTCC-CCHHHHHHHH--------HHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCC-cCHHHHHHHH--------HHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhC
Confidence 34555666777889999988887665 7787776654 33333323 57899999877652 3 2334689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 246 a~~VD 250 (539)
T 1rqb_A 246 VDVVD 250 (539)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99984
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=83.77 E-value=4.3 Score=36.47 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe----c--CCcc-cHhHHhcCCC
Q 015201 239 DYIIYQVESGAHCIQIFDSW-GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI----N--GNGG-FLERMKGTGV 310 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~-~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~----C--G~~~-~l~~~~e~g~ 310 (411)
+-++.+.++|+|+|.++--. .+-+. .+..+++++.++ +.++.+|- | -+.. -++.++++|+
T Consensus 80 ~Di~~~~~~GadGvV~G~Lt~dg~iD--------~~~~~~Li~~a~----~~~vTFHRAFD~~~~~d~~~ale~L~~lGv 147 (224)
T 2bdq_A 80 EDILRAVELESDALVLGILTSNNHID--------TEAIEQLLPATQ----GLPLVFHMAFDVIPKSDQKKSIDQLVALGF 147 (224)
T ss_dssp HHHHHHHHTTCSEEEECCBCTTSSBC--------HHHHHHHHHHHT----TCCEEECGGGGGSCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcC--------HHHHHHHHHHhC----CCeEEEECchhccCCcCHHHHHHHHHHcCC
Confidence 34556778999999765321 12344 355677777775 56888886 3 2222 3677888887
Q ss_pred cEE
Q 015201 311 DVI 313 (411)
Q Consensus 311 d~l 313 (411)
+.+
T Consensus 148 ~rI 150 (224)
T 2bdq_A 148 TRI 150 (224)
T ss_dssp CEE
T ss_pred CEE
Confidence 775
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.66 E-value=23 Score=32.89 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 56 ~~v~~~~~~~~~grvpviaGvg~~-----------~-------------------------t~~ai~la~~A~~~Gadav 99 (294)
T 2ehh_A 56 EKVIEFAVKRAAGRIKVIAGTGGN-----------A-------------------------THEAVHLTAHAKEVGADGA 99 (294)
T ss_dssp HHHHHHHHHHHTTSSEEEEECCCS-----------C-------------------------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCC-----------C-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 345555666677789988776441 0 1333566777788999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CC-cc--cHhHHh-cCCCcEEEc-CCCCCHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GN-GG--FLERMK-GTGVDVIGL-DWTVDMAD 323 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~-~~--~l~~~~-e~g~d~l~~-d~~~di~~ 323 (411)
.+.-++-.-.|+ +-+.-|++.+.+.. ++|++++.. |. .. .+..+. +.+ +++.+ +...|+..
T Consensus 100 lv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~~p-nivgiKds~gd~~~ 169 (294)
T 2ehh_A 100 LVVVPYYNKPTQ----RGLYEHFKTVAQEV-----DIPIIIYNIPSRTCVEISVDTMFKLASECE-NIVASKESTPNMDR 169 (294)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHHHHHHHCT-TEEEEEECCSCHHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCCcccCcCCCHHHHHHHHhhCC-CEEEEEeCCCCHHH
Confidence 877665433454 44566777887765 478877774 42 22 244455 543 55554 33345544
Q ss_pred ---HHHHhCCCeeEEccCCcC
Q 015201 324 ---GRKRLGNDISVQGNVDPA 341 (411)
Q Consensus 324 ---~~~~~g~~~~l~G~vd~~ 341 (411)
+.+..+++..++.|-|..
T Consensus 170 ~~~~~~~~~~~f~v~~G~d~~ 190 (294)
T 2ehh_A 170 ISEIVKRLGESFSVLSGDDSL 190 (294)
T ss_dssp HHHHHHHHCTTSEEEESSGGG
T ss_pred HHHHHHhcCCCeEEEECcHHH
Confidence 444456566666555543
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=12 Score=34.89 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH-hCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 236 AIADYIIYQVE-SGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 236 ~~~~~~~~~~e-~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
.+.++++.+++ .|+|++.+....|. .+|.++.++++. ...+.+.. .+|++.+..++.. -+ ....+
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~ 97 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR----IAKDEAKD---QIALIAQVGSVNLKEAVELGKYATE 97 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHH----HHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 34456667888 99999988877774 799998877653 33344432 5788888877543 23 44556
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 98 ~Gadavlv 105 (293)
T 1f6k_A 98 LGYDCLSA 105 (293)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999743
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=13 Score=34.23 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEec--CCcc--cHhHHhcCCCc----EE-EcCCCCCHHHHHHHh--CCCeeEEccCCc
Q 015201 272 EPYIREIVSLVRTKCPETPIVLYIN--GNGG--FLERMKGTGVD----VI-GLDWTVDMADGRKRL--GNDISVQGNVDP 340 (411)
Q Consensus 272 ~Py~k~i~~~i~~~~~g~~~~~H~C--G~~~--~l~~~~e~g~d----~l-~~d~~~di~~~~~~~--g~~~~l~G~vd~ 340 (411)
...+++.++..++. |.|+++|+. |... .++.+.+.|+. ++ |+....+...+++.. |-.+.+-| ...
T Consensus 150 ~~~~~~~~~lA~~~--~~pv~iH~~~~~~~~~~~~~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~-~~~ 226 (314)
T 2vc7_A 150 EKVIRAAAIANKET--KVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDR-YGL 226 (314)
T ss_dssp HHHHHHHHHHHHHH--CCCEEEECCTTTTHHHHHHHHHHHTTCCGGGEEETTGGGCCCHHHHHHHHHTTCEEEECC-TTC
T ss_pred HHHHHHHHHHHHHH--CCEEEEeCCCcccChHHHHHHHHHcCCCcccEEEECCCCCCCHHHHHHHHHcCCEEEEeC-CCc
Confidence 34556667777776 789999984 3432 46777777764 22 443334566666543 54344432 111
Q ss_pred CccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCC
Q 015201 341 ACLFSPLPALTDEIQRVVKCAGSRGHILNLGHG 373 (411)
Q Consensus 341 ~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~ 373 (411)
.-+.+.++..+.++++++.+....+++++++.
T Consensus 227 -~~~~~~~~~~~~i~~~~~~g~~drilleTD~~ 258 (314)
T 2vc7_A 227 -DLFLPVDKRNETTLRLIKDGYSDKIMISHDYC 258 (314)
T ss_dssp -TTTSCHHHHHHHHHHHHHTTCTTTEEECCCCB
T ss_pred -ccCCCHHHHHHHHHHHHHcCCCCeEEEcCCcc
Confidence 11346677888888888865447899999984
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.28 E-value=9.4 Score=35.57 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|+|++.+....|. .+|.++.++.+. .+.+.+.. .+|++.++.++.. -+ ....+
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~ 93 (292)
T 2vc6_A 21 VALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVE----ITIKTANG---RVPVIAGAGSNSTAEAIAFVRHAQN 93 (292)
T ss_dssp HHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHH
Confidence 34456667888999999987777664 799998877543 33344432 4789988877543 23 44567
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|++.+
T Consensus 94 ~Gadavlv 101 (292)
T 2vc6_A 94 AGADGVLI 101 (292)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89999743
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.25 E-value=10 Score=35.51 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++++....|. .+|.++.++++. ..++.+.. .+|++.|+.++.. -+ ....+.
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~ 101 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIE----AVVKHVAK---RVPVIAGTGANNTVEAIALSQAAEKA 101 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 3445566778899999988877774 799998877653 33344432 5789998876543 23 556678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 102 Gadavlv 108 (297)
T 3flu_A 102 GADYTLS 108 (297)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999853
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=83.23 E-value=8.1 Score=35.77 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCC----CC--CCCHHHHHHH----HHHHHHHHHHHHHhhCCCCCEEEEecCC-------c
Q 015201 237 IADYIIYQVESGAHCIQIFDSW----GG--QLPPHMWEQW----SEPYIREIVSLVRTKCPETPIVLYINGN-------G 299 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~----~~--~iSp~~f~ef----~~Py~k~i~~~i~~~~~g~~~~~H~CG~-------~ 299 (411)
..+.++.+.++|+|.|-++-++ +. .|-...-+-+ -..-.-++++.+++....+|+++..--| .
T Consensus 36 ~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~ 115 (271)
T 3nav_A 36 SLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGID 115 (271)
T ss_dssp HHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHH
Confidence 5677888999999998776443 32 2222111111 0112224555666543368887754222 1
Q ss_pred ccHhHHhcCCCcEEEc-CC----CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC-CC
Q 015201 300 GFLERMKGTGVDVIGL-DW----TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG-HG 373 (411)
Q Consensus 300 ~~l~~~~e~g~d~l~~-d~----~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g-c~ 373 (411)
.+++...+.|+|++-+ |- ..++.+..+++|-+.++. +.| -|++ +..+++.+.. .|||...+ .+
T Consensus 116 ~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~l--vap----~t~~---eri~~i~~~~--~gfiY~vs~~G 184 (271)
T 3nav_A 116 DFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFI--APP----TASD---ETLRAVAQLG--KGYTYLLSRAG 184 (271)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEE--ECT----TCCH---HHHHHHHHHC--CSCEEECCCC-
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEE--ECC----CCCH---HHHHHHHHHC--CCeEEEEeccC
Confidence 2457778899999643 32 223445555566332221 122 2222 2344444442 47776522 12
Q ss_pred C---CCCCcHHHHHHHHHHHHhcCC
Q 015201 374 V---LVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 374 i---~~~tp~Eni~a~~~a~~~yg~ 395 (411)
+ ....+ +.+..+++.+|++..
T Consensus 185 vTG~~~~~~-~~~~~~v~~vr~~~~ 208 (271)
T 3nav_A 185 VTGAETKAN-MPVHALLERLQQFDA 208 (271)
T ss_dssp -------CC-HHHHHHHHHHHHTTC
T ss_pred CCCcccCCc-hhHHHHHHHHHHhcC
Confidence 2 22233 568888888888753
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=83.10 E-value=6.6 Score=36.73 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC---CCEEEEecCCccc-H-hH--Hhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE---TPIVLYINGNGGF-L-ER--MKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g---~~~~~H~CG~~~~-l-~~--~~e 307 (411)
+++.+.++.+.++|++.|.+.|..|. +.|..+.++ ++.+++..|+ +++-+|.+.+... + .. -.+
T Consensus 150 ~~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~ 220 (293)
T 3ewb_X 150 AFLIEAVQTAIDAGATVINIPDTVGY-TNPTEFGQL--------FQDLRREIKQFDDIIFASHCHDDLGMATANALAAIE 220 (293)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSSC-CCHHHHHHH--------HHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-CCHHHHHHH--------HHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHH
Confidence 34556666778889999988887765 888877664 3444444332 5688999887652 3 33 346
Q ss_pred CCCcEEE
Q 015201 308 TGVDVIG 314 (411)
Q Consensus 308 ~g~d~l~ 314 (411)
.|++.+.
T Consensus 221 aGa~~vd 227 (293)
T 3ewb_X 221 NGARRVE 227 (293)
T ss_dssp TTCCEEE
T ss_pred hCCCEEE
Confidence 8999884
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=83.06 E-value=10 Score=35.32 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++++....|. .+|.++.++.+. ..++.+. +.+|++.|..++.. -+ ....+.
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~---gr~pviaGvg~~~t~~ai~la~~a~~~ 95 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIK----EIIRVAN---KRIPIIAGTGANSTREAIELTKAAKDL 95 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHT---TSSCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHH----HHHHHhC---CCCeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3445566788899999988877774 799988866543 3334443 25789998877643 23 456678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 96 Gadavlv 102 (291)
T 3tak_A 96 GADAALL 102 (291)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999753
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=83.03 E-value=3.4 Score=37.93 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe----cCCcc-cHhHHhcCCCcE
Q 015201 239 DYIIYQVESGAHCIQIFDSW-GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI----NGNGG-FLERMKGTGVDV 312 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~-~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~----CG~~~-~l~~~~e~g~d~ 312 (411)
+-++.+.++|+|+|.++--. .+-+. .+..+++++.++ +.++.+|- |-+.. -++.++++|++.
T Consensus 77 ~Di~~~~~~GadGvV~G~Lt~dg~iD--------~~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~ale~L~~lG~~r 144 (256)
T 1twd_A 77 EDVRTVRELGFPGLVTGVLDVDGNVD--------MPRMEKIMAAAG----PLAVTFHRAFDMCANPLYTLNNLAELGIAR 144 (256)
T ss_dssp HHHHHHHHTTCSEEEECCBCTTSSBC--------HHHHHHHHHHHT----TSEEEECGGGGGCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCCEEEEeeECCCCCcC--------HHHHHHHHHHhC----CCcEEEECchhccCCHHHHHHHHHHcCCCE
Confidence 34567788999999765311 12344 355677777775 56889996 33333 489999999998
Q ss_pred EEcC----C-CCCHHHHHHH---hCCCeeEE--ccCCcC
Q 015201 313 IGLD----W-TVDMADGRKR---LGNDISVQ--GNVDPA 341 (411)
Q Consensus 313 l~~d----~-~~di~~~~~~---~g~~~~l~--G~vd~~ 341 (411)
+-.. . .-.+..+++. .+ ++.|| |||.+.
T Consensus 145 ILTSG~~~~a~~g~~~L~~Lv~~a~-~i~Im~GgGv~~~ 182 (256)
T 1twd_A 145 VLTSGQKSDALQGLSKIMELIAHRD-APIIMAGAGVRAE 182 (256)
T ss_dssp EEECTTSSSTTTTHHHHHHHHTSSS-CCEEEEESSCCTT
T ss_pred EECCCCCCCHHHHHHHHHHHHHhhC-CcEEEecCCcCHH
Confidence 6321 1 1134444443 34 66665 677763
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=32 Score=32.49 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCEEEEecC-CCCCCCH----HHHHHHHHHHHHHHHHHHHhhC--CCCCEEEEecC-
Q 015201 228 TLLSHLTQAIADYIIYQVESG--AHCIQIFDS-WGGQLPP----HMWEQWSEPYIREIVSLVRTKC--PETPIVLYING- 297 (411)
Q Consensus 228 ~ll~~~~d~~~~~~~~~~e~G--~d~i~i~D~-~~~~iSp----~~f~ef~~Py~k~i~~~i~~~~--~g~~~~~H~CG- 297 (411)
++.+.+.++..+.++.+.+.| ++.++++.- ..+++.| ..+ +-...++++.++.+|+.. ++.++++|.+.
T Consensus 104 ~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~-~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~~ 182 (332)
T 1hjs_A 104 NLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENW-ANIARLLHSAAWGIKDSSLSPKPKIMIHLDNG 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCH-HHHHHHHHHHHHHHHTSCCSSCCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCH-HHHHHHHHHHHHHHHHhccCCCCeEEEEeCCc
Confidence 334444455555566666665 566666542 2233322 123 334567778888999886 67778999873
Q ss_pred -Ccc----cHhHHhcCC------CcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCe
Q 015201 298 -NGG----FLERMKGTG------VDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGH 366 (411)
Q Consensus 298 -~~~----~l~~~~e~g------~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gf 366 (411)
+.. .++.+.+.| +|+++++...- + +. .++.+.+++..+++-+..++.=+
T Consensus 183 ~~~~~~~~~~d~~~~~g~~~~~~~DvIG~syYp~-------w----------~~---~~~~~~l~~~l~~~~~rygKpv~ 242 (332)
T 1hjs_A 183 WDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYPF-------Y----------SS---SATLSALKSSLDNMAKTWNKEIA 242 (332)
T ss_dssp TCHHHHHHHHHHHHTTSSSCGGGCCEEEEECCSS-------S----------CT---TCCHHHHHHHHHHHHHHHCCEEE
T ss_pred cchHHHHHHHHHHHhcCCCCCCCcCEEEEecCcc-------c----------CC---CCCHHHHHHHHHHHHHHHCCCEE
Confidence 221 236565544 77887765320 0 00 14677888888888777766677
Q ss_pred EEeCCCCC
Q 015201 367 ILNLGHGV 374 (411)
Q Consensus 367 Ils~gc~i 374 (411)
|.-+||..
T Consensus 243 v~EtG~~~ 250 (332)
T 1hjs_A 243 VVETNWPI 250 (332)
T ss_dssp EEECCCCS
T ss_pred EEEccCcc
Confidence 88888753
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=82.84 E-value=19 Score=33.95 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++++....|. .+|.++.++.+. ..++.+. +.+|++.|+.++.. -+ ....+.
T Consensus 33 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~----~~~~~~~---grvpviaGvg~~~t~~ai~la~~a~~~ 105 (318)
T 3qfe_A 33 SQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIA----TARKAVG---PDFPIMAGVGAHSTRQVLEHINDASVA 105 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHC---TTSCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhC---CCCcEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3445566788899999988877774 799998877553 3333333 25799988876543 23 455578
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 106 Gadavlv 112 (318)
T 3qfe_A 106 GANYVLV 112 (318)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999753
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=82.79 E-value=7.7 Score=36.35 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++.+. ..++.+... .+|++.|+.++.. -+ ....+.
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~----~~~~~~~g~--rvpviaGvg~~~t~~ai~la~~a~~~ 102 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIE----IAVETCKGT--KVKVLAGAGSNATHEAVGLAKFAKEH 102 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTTS--SCEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCCC--CCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3445566788899999988777774 799988777543 333444320 3789998877543 23 456678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 103 Gadavlv 109 (301)
T 3m5v_A 103 GADGILS 109 (301)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999853
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=82.77 E-value=3 Score=38.74 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCcc------cHhHHhcCCCcEEEcC-----C-----------------CCC------
Q 015201 275 IREIVSLVRTKCPETPIVLYINGNGG------FLERMKGTGVDVIGLD-----W-----------------TVD------ 320 (411)
Q Consensus 275 ~k~i~~~i~~~~~g~~~~~H~CG~~~------~l~~~~e~g~d~l~~d-----~-----------------~~d------ 320 (411)
+++.++.+++.+....+-+-..|+.+ .+..+.+.|+|++.+. + +++
T Consensus 7 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~ 86 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFE 86 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 56667777766422223444568753 2456677899998642 1 111
Q ss_pred -HHHHHHH-hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCCC
Q 015201 321 -MADGRKR-LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKYD 396 (411)
Q Consensus 321 -i~~~~~~-~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~~ 396 (411)
+.++++. ..-.+.+||-.+|..-.| +.+.++++.+.+.+ |+|+ +|.|+|....+.+.+++||-.
T Consensus 87 ~v~~~r~~~~~~Pivlm~Y~n~v~~~g----~~~f~~~~~~aGvd-GvIi-------pDlp~ee~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 87 LIAQIRARNPETPIGLLMYANLVYARG----IDDFYQRCQKAGVD-SVLI-------ADVPTNESQPFVAAAEKFGIQ 152 (271)
T ss_dssp HHHHHHHHCTTSCEEEEECHHHHHHTC----HHHHHHHHHHHTCC-EEEE-------TTSCGGGCHHHHHHHHHTTCE
T ss_pred HHHHHHhcCCCCCEEEEecCcHHHHHh----HHHHHHHHHHCCCC-EEEE-------CCCCHHHHHHHHHHHHHcCCe
Confidence 2333444 233577788777732245 34556666665444 5555 355566677777778887754
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=82.76 E-value=32 Score=32.31 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 015201 171 FVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAH 250 (411)
Q Consensus 171 ~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d 250 (411)
+..+.++...+..++++|+++.+++ + ++-.++.++...++|+|
T Consensus 66 Er~~v~~~~v~~~~grvpViaGvg~--~-----------------------------------t~~ai~la~~A~~~Gad 108 (316)
T 3e96_A 66 EAKEEVRRTVEYVHGRALVVAGIGY--A-----------------------------------TSTAIELGNAAKAAGAD 108 (316)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECS--S-----------------------------------HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCc--C-----------------------------------HHHHHHHHHHHHhcCCC
Confidence 3345556667777788998876532 1 12234566677789999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc-c--cHhHHhcCCCcEEEc-CCCCCHHHHHH
Q 015201 251 CIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG-G--FLERMKGTGVDVIGL-DWTVDMADGRK 326 (411)
Q Consensus 251 ~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~-~--~l~~~~e~g~d~l~~-d~~~di~~~~~ 326 (411)
++.+.-++-.-.|+ +-+.-|++.+.+.. ++|++++..|.. . .+..+.+.+ +++.+ +...|+....+
T Consensus 109 avlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~g~~l~~~~~~~La~~p-nIvgiKdssgd~~~~~~ 178 (316)
T 3e96_A 109 AVMIHMPIHPYVTA----GGVYAYFRDIIEAL-----DFPSLVYFKDPEISDRVLVDLAPLQ-NLVGVKYAINDLPRFAK 178 (316)
T ss_dssp EEEECCCCCSCCCH----HHHHHHHHHHHHHH-----TSCEEEEECCTTSCTHHHHHHTTCT-TEEEEEECCCCHHHHHH
T ss_pred EEEEcCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCCCCCCHHHHHHHHcCC-CEEEEEeCCCCHHHHHH
Confidence 99876665444454 45677889999887 468887776542 2 245555554 55555 44457766655
Q ss_pred Hh
Q 015201 327 RL 328 (411)
Q Consensus 327 ~~ 328 (411)
..
T Consensus 179 ~~ 180 (316)
T 3e96_A 179 VV 180 (316)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=82.66 E-value=22 Score=33.43 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=83.5
Q ss_pred HHHHHHhCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEE--e----cCCcc---cHhH-----
Q 015201 241 IIYQVESGAHCIQI--FDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLY--I----NGNGG---FLER----- 304 (411)
Q Consensus 241 ~~~~~e~G~d~i~i--~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H--~----CG~~~---~l~~----- 304 (411)
.+..++.|+|++.+ .=..++--..+| +....++.+.++++ |.|++++ . -|... ..+.
T Consensus 134 Ve~AvrlGADaV~~l~~i~~Gs~~e~~~-----l~~la~vv~ea~~~--GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aa 206 (307)
T 3fok_A 134 VSSMVDRGVDFAKTLVRINLSDAGTAPT-----LEATAHAVNEAAAA--QLPIMLEPFMSNWVNGKVVNDLSTDAVIQSV 206 (307)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCTTHHHH-----HHHHHHHHHHHHHT--TCCEEEEEEEEEEETTEEEECCSHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEEECCCChhHHHH-----HHHHHHHHHHHHHc--CCcEEEEeeccccCCCCcCCCCCHHHHHHHH
Confidence 34556779999763 223333222344 45567899999998 7998876 3 23221 1222
Q ss_pred --HhcCCCc----EEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC--
Q 015201 305 --MKGTGVD----VIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV-- 376 (411)
Q Consensus 305 --~~e~g~d----~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~-- 376 (411)
-.++|.| ++=+.+.-++.++.+...-.+.+.||=.. ++++++.+.+++.++..|..|.++ |=++..
T Consensus 207 RiAaELGADs~~tivK~~y~e~f~~Vv~a~~vPVViaGG~k~----~~~~e~L~~v~~A~~~aGa~Gv~v--GRNIfQ~~ 280 (307)
T 3fok_A 207 AIAAGLGNDSSYTWMKLPVVEEMERVMESTTMPTLLLGGEGG----NDPDATFASWEHALTLPGVRGLTV--GRTLLYPQ 280 (307)
T ss_dssp HHHHTCSSCCSSEEEEEECCTTHHHHGGGCSSCEEEECCSCC------CHHHHHHHHHHTTSTTEEEEEE--CTTTSSCS
T ss_pred HHHHHhCCCcCCCEEEeCCcHHHHHHHHhCCCCEEEeCCCCC----CCHHHHHHHHHHHHHhCCCeEEee--chhhccCC
Confidence 2378999 87655544666666655544555554221 367899999999999534446665 445532
Q ss_pred -CCcHHHHHHHHHHHHhcC
Q 015201 377 -GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 377 -~tp~Eni~a~~~a~~~yg 394 (411)
+-|..-++++...+|.-.
T Consensus 281 ~~dp~~~v~al~~iVH~~~ 299 (307)
T 3fok_A 281 DGDVAAAVDTAARLVHTDI 299 (307)
T ss_dssp SSCHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHhhH
Confidence 445566666666666433
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=82.60 E-value=33 Score=32.56 Aligned_cols=109 Identities=20% Similarity=0.300 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEecCCC----CCCCHH------HHH---HHHHHHHHHHHHHHHhhCCCCCEEEEec
Q 015201 230 LSHLTQAIADYIIYQVESGAHCIQIFDSWG----GQLPPH------MWE---QWSEPYIREIVSLVRTKCPETPIVLYIN 296 (411)
Q Consensus 230 l~~~~d~~~~~~~~~~e~G~d~i~i~D~~~----~~iSp~------~f~---ef~~Py~k~i~~~i~~~~~g~~~~~H~C 296 (411)
++.+.+...+.++...++|.|+|-+.-.-+ .|+||. .|- |-=..+..++++.+++.. +.|+.+-+.
T Consensus 139 I~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls 217 (340)
T 3gr7_A 139 IEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRIS 217 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEec
Confidence 333444445556677889999998874432 133331 110 111234556666666665 668877665
Q ss_pred CC-------c-c----cHhHHhcCCCcEEEcCCC------------CC---HHHHHHHhCCCeeEEccCC
Q 015201 297 GN-------G-G----FLERMKGTGVDVIGLDWT------------VD---MADGRKRLGNDISVQGNVD 339 (411)
Q Consensus 297 G~-------~-~----~l~~~~e~g~d~l~~d~~------------~d---i~~~~~~~g~~~~l~G~vd 339 (411)
.+ . . +...+.+.|+|.+++... .+ +.++++.++-.+...|+|.
T Consensus 218 ~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~ 287 (340)
T 3gr7_A 218 ASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLIT 287 (340)
T ss_dssp SCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCC
Confidence 32 1 1 236677889999986321 12 3456777765566667663
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=5.4 Score=38.58 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCc----EE-EcCCCCCHHHHHHHhCC--CeeEEc-cCCcC
Q 015201 273 PYIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVD----VI-GLDWTVDMADGRKRLGN--DISVQG-NVDPA 341 (411)
Q Consensus 273 Py~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d----~l-~~d~~~di~~~~~~~g~--~~~l~G-~vd~~ 341 (411)
..++..+...++. |.|+++|.-.... .++.+.+.|++ ++ +.+...|...+++.+.- .+.|-| +.+..
T Consensus 193 k~frA~a~aa~et--G~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~ 270 (360)
T 3tn4_A 193 MFFRAAARAQKET--GAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGM 270 (360)
T ss_dssp HHHHHHHHHHHHH--CCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCS
T ss_pred HHHHHHHHHHHHh--CCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccc
Confidence 4556667777776 7999999876543 36778888876 33 44566788888776642 222211 12221
Q ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeEEeCCC
Q 015201 342 CLFSPLPALTDEIQRVVKCAGSRGHILNLGH 372 (411)
Q Consensus 342 ~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc 372 (411)
.-.-+.++-.+.++++++.+.....+|++++
T Consensus 271 ~~~p~d~~r~~~l~~lv~~g~~drILLstDa 301 (360)
T 3tn4_A 271 VGAPTDEERVRTLLALLRDGYEKQIMLSHDT 301 (360)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCGGGEEECCCC
T ss_pred cCCCChHHHHHHHHHHHHhcCcceEEEecCC
Confidence 1123445666778888887655799999997
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=82.17 E-value=13 Score=34.81 Aligned_cols=122 Identities=13% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 56 ~~v~~~~~~~~~grvpviaGvg~~-----------~-------------------------t~~ai~la~~A~~~Gadav 99 (297)
T 2rfg_A 56 KRVVALVAEQAQGRVPVIAGAGSN-----------N-------------------------PVEAVRYAQHAQQAGADAV 99 (297)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCCS-----------S-------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCeEEEccCCC-----------C-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 344555666677788988766441 0 1233566677778899998
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCC---H
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVD---M 321 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~d---i 321 (411)
.+.-++-.-.|+ +-+.-|++.+.+.. ++|++++.. |.. . .+..+.+.+ ++..+ +...| +
T Consensus 100 lv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nIvgiKds~gd~~~~ 169 (297)
T 2rfg_A 100 LCVAGYYNRPSQ----EGLYQHFKMVHDAI-----DIPIIVYNIPPRAVVDIKPETMARLAALP-RIVGVKDATTDLARI 169 (297)
T ss_dssp EECCCTTTCCCH----HHHHHHHHHHHHHC-----SSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECSCCTTHH
T ss_pred EEcCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCccccCCCCCHHHHHHHHcCC-CEEEEEeCCCCHHHH
Confidence 776664433344 45566777777765 468877764 321 2 234455543 45444 22223 3
Q ss_pred HHHHHHhCCCeeEEccCCc
Q 015201 322 ADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 322 ~~~~~~~g~~~~l~G~vd~ 340 (411)
.++++..+++..+..|-|.
T Consensus 170 ~~~~~~~~~~f~v~~G~d~ 188 (297)
T 2rfg_A 170 SRERMLINKPFSFLSGDDM 188 (297)
T ss_dssp HHHHTTCCSCCEEEESCGG
T ss_pred HHHHHhcCCCEEEEeCcHH
Confidence 3444444555555555554
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=82.15 E-value=14 Score=35.98 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCc--------ccHhHHhcC
Q 015201 237 IADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNG--------GFLERMKGT 308 (411)
Q Consensus 237 ~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~--------~~l~~~~e~ 308 (411)
..+|++.+.++|...|+. ++.+|+.-.+-+...++++++.+++. |..+++-+-... ..+..+.++
T Consensus 43 ~~~Yi~~a~~~Gf~~IFT-----SL~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DVsp~~~~~Lg~s~~dl~~f~~l 115 (385)
T 1x7f_A 43 DMAYISAAARHGFSRIFT-----CLLSVNRPKEEIVAEFKEIINHAKDN--NMEVILDVAPAVFDQLGISYSDLSFFAEL 115 (385)
T ss_dssp HHHHHHHHHTTTEEEEEE-----EECCC--------HHHHHHHHHHHHT--TCEEEEEECTTCC------CCCTHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEc-----cCCccCCChHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHHHcCCCHHHHHHHHHc
Confidence 347888888999888753 46688888888899999999999998 677777666643 246778999
Q ss_pred CCcEEEcCCCCCHHHHHHHhCCC--eeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-C---CCCcHHH
Q 015201 309 GVDVIGLDWTVDMADGRKRLGND--ISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-L---VGTPEEA 382 (411)
Q Consensus 309 g~d~l~~d~~~di~~~~~~~g~~--~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~---~~tp~En 382 (411)
|++++=+|...+..+..+.--+. +.+.=|..+ |++ ++.++++...+..-|.+. |+. | .|-+.+-
T Consensus 116 Gi~gLRLD~Gf~~~eia~ls~n~~glkIeLNASt-----~~~----~l~~l~~~~~n~~~l~ac-HNFYPr~~TGLs~~~ 185 (385)
T 1x7f_A 116 GADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSN-----DIA----YLENILSHQANKSALIGC-HNFYPQKFTGLPYDY 185 (385)
T ss_dssp TCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTS-----CSS----HHHHHTTSSCCGGGEEEE-CCCBCSTTCSBCHHH
T ss_pred CCCEEEEcCCCCHHHHHHHhcCCCCCEEEEeCcC-----CHH----HHHHHHHcCCChHHeEEe-eccCCCCCCCCCHHH
Confidence 99999999999888887754331 333322222 333 334455554443334433 554 3 3568899
Q ss_pred HHHHHHHHHhcCC
Q 015201 383 VAHFFEVGKSMKY 395 (411)
Q Consensus 383 i~a~~~a~~~yg~ 395 (411)
+...-+..|+||-
T Consensus 186 f~~~n~~~k~~Gi 198 (385)
T 1x7f_A 186 FIRCSERFKKHGI 198 (385)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999874
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.81 E-value=17 Score=34.53 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++++. ..++.+.. .+|++.++.++.. -+ ....+.
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 128 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIE----AAATILRG---RRTLMAGIGALRTDEAVALAKDAEAA 128 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 3345556778899999988887774 799998877653 33344432 4789988877543 23 445568
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 129 Gadavlv 135 (332)
T 2r8w_A 129 GADALLL 135 (332)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998753
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=81.81 E-value=12 Score=34.80 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC-c--c-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQ-LPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN-G--G-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~-iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~-~--~-~l~~~~e~g 309 (411)
+-.++.++...++|+|++.+.-++-.- .|+ +=+.-|++++.+.. ++|++++..-. + . ..+.+.++
T Consensus 78 ~~ai~la~~A~~~Gadavlv~~P~y~~~~s~----~~l~~~f~~va~a~-----~lPiilYn~P~~tg~~l~~~~~~~L- 147 (288)
T 2nuw_A 78 NDVMELVKFSNEMDILGVSSHSPYYFPRLPE----KFLAKYYEEIARIS-----SHSLYIYNYPAATGYDIPPSILKSL- 147 (288)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCCSSCSCCH----HHHHHHHHHHHHHC-----CSCEEEEECHHHHSCCCCHHHHTTT-
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEECchHhCcCCCHHHHhcc-
Confidence 344677778888999999877665433 454 44667788888765 57888877532 2 2 24667677
Q ss_pred CcEEEc-CCCCCHHHHHHH--hCCCeeEEccCC
Q 015201 310 VDVIGL-DWTVDMADGRKR--LGNDISVQGNVD 339 (411)
Q Consensus 310 ~d~l~~-d~~~di~~~~~~--~g~~~~l~G~vd 339 (411)
++..+ +..-|+....+. .+++..+..|-|
T Consensus 148 -nIvgiKdssgd~~~~~~~~~~~~~f~v~~G~d 179 (288)
T 2nuw_A 148 -PVKGIKDTNQDLAHSLEYKLNLPGVKVYNGSN 179 (288)
T ss_dssp -TEEEEEECCSCHHHHHHHHHHSTTCEEEECCG
T ss_pred -EEEEEEeCCCCHHHHHHHHhcCCCeEEEECcH
Confidence 66655 344465554332 455665555554
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=81.79 E-value=27 Score=32.31 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|++..+++. + ++-.++.++...++|+|++
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gadav 100 (292)
T 2ojp_A 57 ADVVMMTLDLADGRIPVIAGTGAN-----------A-------------------------TAEAISLTQRFNDSGIVGC 100 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCS-----------S-------------------------HHHHHHHHHHTTTSSCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCc-----------c-------------------------HHHHHHHHHHHHhcCCCEE
Confidence 344555666677788988766442 0 1333466677778999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMADG 324 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~~ 324 (411)
.+.-++-.-.|+ +=+.-|++.+.+.. +.|++++.. |.. . .+..+.+. -++..+ +...|+...
T Consensus 101 lv~~P~y~~~s~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~-pnivgiK~s~gd~~~~ 170 (292)
T 2ojp_A 101 LTVTPYYNRPSQ----EGLYQHFKAIAEHT-----DLPQILYNVPSRTGCDLLPETVGRLAKV-KNIIGIXEATGNLTRV 170 (292)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHTTC-----SSCEEEECCHHHHSCCCCHHHHHHHHTS-TTEEEC-CCSCCTHHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhc-----CCCEEEEeCcchhccCCCHHHHHHHHcC-CCEEEEeCCCCCHHHH
Confidence 887765433455 44566777777654 578888774 432 2 24445554 356666 444466655
Q ss_pred HHH---hCCCeeEEccCC
Q 015201 325 RKR---LGNDISVQGNVD 339 (411)
Q Consensus 325 ~~~---~g~~~~l~G~vd 339 (411)
.+. .+++..++.|-|
T Consensus 171 ~~~~~~~~~~f~v~~G~d 188 (292)
T 2ojp_A 171 NQIKELVSDDFVLLSGDD 188 (292)
T ss_dssp HHHHTTSCTTSBCEESCG
T ss_pred HHHHHhcCCCEEEEECcH
Confidence 544 333444443333
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=81.68 E-value=33 Score=31.77 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Q 015201 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCI 252 (411)
Q Consensus 173 ~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i 252 (411)
.+.++...+..++++|+++.+++. + ++-.++.++...++|+|++
T Consensus 58 ~~v~~~~~~~~~grvpviaGvg~~-----------~-------------------------t~~ai~la~~a~~~Gadav 101 (292)
T 3daq_A 58 ELILKTVIDLVDKRVPVIAGTGTN-----------D-------------------------TEKSIQASIQAKALGADAI 101 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCS-----------C-------------------------HHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCcc-----------c-------------------------HHHHHHHHHHHHHcCCCEE
Confidence 344555666667789988766442 0 2334566667778899999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCCcEEEc-CCCCCHHHH
Q 015201 253 QIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGVDVIGL-DWTVDMADG 324 (411)
Q Consensus 253 ~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~d~l~~-d~~~di~~~ 324 (411)
.+.-++-.-.|+ +=+.-|++.+.+.. ++|++++.+ |.. . .+..+.+.+ +++.+ +...|+...
T Consensus 102 lv~~P~y~~~~~----~~l~~~f~~ia~a~-----~lPiilYn~P~~tg~~l~~~~~~~La~~p-nivgiK~ssgd~~~~ 171 (292)
T 3daq_A 102 MLITPYYNKTNQ----RGLVKHFEAIADAV-----KLPVVLYNVPSRTNMTIEPETVEILSQHP-YIVALKDATNDFEYL 171 (292)
T ss_dssp EEECCCSSCCCH----HHHHHHHHHHHHHH-----CSCEEEEECHHHHSCCCCHHHHHHHHTST-TEEEEEECCCCHHHH
T ss_pred EECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEecccccCCCCCHHHHHHHhcCC-CEEEEEeCCCCHHHH
Confidence 887765443454 34666889998887 468877765 322 2 245556643 56655 344466655
Q ss_pred HHH---hCC-CeeEEccCCc
Q 015201 325 RKR---LGN-DISVQGNVDP 340 (411)
Q Consensus 325 ~~~---~g~-~~~l~G~vd~ 340 (411)
.+. .++ +..+..|-|.
T Consensus 172 ~~~~~~~~~~~f~v~~G~d~ 191 (292)
T 3daq_A 172 EEVKKRIDTNSFALYSGNDD 191 (292)
T ss_dssp HHHHTTSCTTTSEEEESCGG
T ss_pred HHHHHHCCCCCEEEEECCHH
Confidence 443 344 4555544443
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=81.65 E-value=35 Score=32.01 Aligned_cols=122 Identities=13% Similarity=0.258 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Q 015201 172 VGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHC 251 (411)
Q Consensus 172 ~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~ 251 (411)
..+.++...+..++++|+++.+++ ++ +-.++.++...++|+|+
T Consensus 67 r~~vi~~~~~~~~grvpViaGvg~--st-----------------------------------~~ai~la~~A~~~Gada 109 (314)
T 3d0c_A 67 AKQVATRVTELVNGRATVVAGIGY--SV-----------------------------------DTAIELGKSAIDSGADC 109 (314)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECS--SH-----------------------------------HHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhCCCCeEEecCCc--CH-----------------------------------HHHHHHHHHHHHcCCCE
Confidence 345555566777778998876643 21 12236666777889999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcCCCcEEEc-CCCCCHHHH---
Q 015201 252 IQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGTGVDVIGL-DWTVDMADG--- 324 (411)
Q Consensus 252 i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~g~d~l~~-d~~~di~~~--- 324 (411)
+.+.-++-.-.|+ +=+.-|++.+.+.. ++|++++.. |... .+..+.+.+ ++..+ +...|+...
T Consensus 110 vlv~~P~y~~~s~----~~l~~~f~~va~a~-----~lPiilYn~tg~l~~~~~~~La~~p-nIvgiKdssgd~~~~~~~ 179 (314)
T 3d0c_A 110 VMIHQPVHPYITD----AGAVEYYRNIIEAL-----DAPSIIYFKDAHLSDDVIKELAPLD-KLVGIKYAINDIQRVTQV 179 (314)
T ss_dssp EEECCCCCSCCCH----HHHHHHHHHHHHHS-----SSCEEEEECCTTSCTHHHHHHTTCT-TEEEEEECCCCHHHHHHH
T ss_pred EEECCCCCCCCCH----HHHHHHHHHHHHhC-----CCCEEEEeCCCCcCHHHHHHHHcCC-CEEEEEeCCCCHHHHHHH
Confidence 9877665433454 44677888888765 468776653 3311 133444442 45554 333455443
Q ss_pred HHHhCC--CeeEEccCCc
Q 015201 325 RKRLGN--DISVQGNVDP 340 (411)
Q Consensus 325 ~~~~g~--~~~l~G~vd~ 340 (411)
.+..++ +..+..|-|.
T Consensus 180 ~~~~~~~~~f~v~~G~d~ 197 (314)
T 3d0c_A 180 MRAVPKSSNVAFICGTAE 197 (314)
T ss_dssp HHHSCGGGCCEEEETTHH
T ss_pred HHhcCCCCCEEEEEeCcH
Confidence 344454 4555544444
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.46 E-value=16 Score=34.45 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++++....|. .+|.++.++++. ..++.+.. .+|++.++.++.. -+ ....+.
T Consensus 46 ~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~ 118 (315)
T 3na8_A 46 ALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVD----FTLKTVAH---RVPTIVSVSDLTTAKTVRRAQFAESL 118 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 3345566778899999988777764 799998877543 33344432 5789988776543 23 456678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 119 Gadavlv 125 (315)
T 3na8_A 119 GAEAVMV 125 (315)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999854
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=81.45 E-value=12 Score=35.01 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++++. ..++.+. +.+|++.++.++.. -+ ....+.
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~----~~~~~~~---grvpViaGvg~~~t~~ai~la~~A~~~ 105 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLE----IVAEEAK---GKIKLIAHVGCVSTAESQQLAASAKRY 105 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHT---TTSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHH----HHHHHhC---CCCcEEEecCCCCHHHHHHHHHHHHhC
Confidence 3445566778899999988887774 699998877643 3334443 25788888877543 23 445568
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 106 Gadavlv 112 (303)
T 2wkj_A 106 GFDAVSA 112 (303)
T ss_dssp TCSEEEE
T ss_pred CCCEEEe
Confidence 9998743
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=81.38 E-value=7.5 Score=37.20 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCccc-H---hHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCP-ETPIVLYINGNGGF-L---ERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~-g~~~~~H~CG~~~~-l---~~~~e~g 309 (411)
+++.+.++...++|++.|.+.|..|. ..|+.+.++ ++.+++..| ++|+-+|.+-+... + ..-.+.|
T Consensus 149 e~~~~ia~~~~~~Ga~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aG 219 (345)
T 1nvm_A 149 EKLAEQGKLMESYGATCIYMADSGGA-MSMNDIRDR--------MRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEG 219 (345)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECTTCC-CCHHHHHHH--------HHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCc-cCHHHHHHH--------HHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcC
Confidence 44455556667779999999888765 468776654 445555443 67899999887652 3 3345689
Q ss_pred CcEEE
Q 015201 310 VDVIG 314 (411)
Q Consensus 310 ~d~l~ 314 (411)
++.+.
T Consensus 220 a~~vd 224 (345)
T 1nvm_A 220 CDRVD 224 (345)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 99884
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=9.1 Score=36.65 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++++. .+++.+.. .+|++.++.++.. -+ ....+.
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~----~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~ 125 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIAR----FAIDHVDR---RVPVLIGTGGTNARETIELSQHAQQA 125 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 3345566778899999988877774 799998877653 33344432 5789988877643 23 445568
Q ss_pred CCcEEEcC----CCCCHHHHHHHhC------CCeeEEccCCcCc-cCCCHHHHHHHHHHHHHHhCC-CCeEEeCCCCCCC
Q 015201 309 GVDVIGLD----WTVDMADGRKRLG------NDISVQGNVDPAC-LFSPLPALTDEIQRVVKCAGS-RGHILNLGHGVLV 376 (411)
Q Consensus 309 g~d~l~~d----~~~di~~~~~~~g------~~~~l~G~vd~~~-L~gt~eeV~~ev~~~i~~~~~-~gfIls~gc~i~~ 376 (411)
|+|++.+- +..+-+++.+.|. +--++.=|++... ..-++|.+.+-++ +..+ -|+--++|
T Consensus 126 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~----~~pnIvgiKdssg----- 196 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLAD----SRSNIIGIKDTID----- 196 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHH----HCTTEEEEEECCS-----
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHH----hCCCEEEEEeCCC-----
Confidence 99997431 1235555544442 1112233443221 2346666654432 2222 23333332
Q ss_pred CCcHHHHHHHHHHHH
Q 015201 377 GTPEEAVAHFFEVGK 391 (411)
Q Consensus 377 ~tp~Eni~a~~~a~~ 391 (411)
+.+++..+++...
T Consensus 197 --d~~~~~~l~~~~~ 209 (343)
T 2v9d_A 197 --SVAHLRSMIHTVK 209 (343)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHhcC
Confidence 3667777777654
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=12 Score=35.54 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEE
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVI 313 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l 313 (411)
.+...+++..+.+..+|.- +|+....-...++...++..+.+.+.++|+.+|.+ |... .+..-++.|++.+
T Consensus 30 ~~~Ail~AAee~~sPvIlq-------~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSV 102 (323)
T 2isw_A 30 QIQGIMKAVVQLKSPVILQ-------CSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSV 102 (323)
T ss_dssp HHHHHHHHHHHTTCCEEEE-------EEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhCCCEEEE-------CChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 3344555677778887642 33332211123444555555544423799999997 4333 5677888999999
Q ss_pred EcCC
Q 015201 314 GLDW 317 (411)
Q Consensus 314 ~~d~ 317 (411)
.+|.
T Consensus 103 MiDg 106 (323)
T 2isw_A 103 MIDA 106 (323)
T ss_dssp EECC
T ss_pred EecC
Confidence 8874
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=81.02 E-value=12 Score=34.85 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+..+.|. .+|.++.++.+. ...+.+.. .+|++.+..++.. -+ ....+.
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~----~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~ 94 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIE----KVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDV 94 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 4445666788899999988877774 699998877543 33344432 4788888877543 23 445568
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 95 Gadavlv 101 (289)
T 2yxg_A 95 GADAVLS 101 (289)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999743
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=80.92 E-value=5.3 Score=38.03 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC---CCEEEEecCCccc-H-hH--Hhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPE---TPIVLYINGNGGF-L-ER--MKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g---~~~~~H~CG~~~~-l-~~--~~e 307 (411)
+++.+.++.+.++|++.|.+.|..|. +.|..+.++ ++.+++..++ +++-+|...+... + .. -.+
T Consensus 151 ~~~~~~~~~~~~~G~~~i~l~DT~G~-~~P~~v~~l--------v~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~ 221 (325)
T 3eeg_A 151 AFLARMVEAVIEAGADVVNIPDTTGY-MLPWQYGER--------IKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQ 221 (325)
T ss_dssp HHHHHHHHHHHHHTCSEEECCBSSSC-CCHHHHHHH--------HHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEecCccCC-cCHHHHHHH--------HHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHH
Confidence 34455566777889999988777665 888776554 4445544443 6788898877652 3 33 335
Q ss_pred CCCcEEE
Q 015201 308 TGVDVIG 314 (411)
Q Consensus 308 ~g~d~l~ 314 (411)
.|++.+.
T Consensus 222 aGa~~vd 228 (325)
T 3eeg_A 222 NGARQVE 228 (325)
T ss_dssp HTCCEEE
T ss_pred hCCCEEE
Confidence 7999984
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=80.38 E-value=10 Score=35.81 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++++....|. .+|.++.++++. ..++.+.. .+|++.++.++.. -+ ....+.
T Consensus 44 ~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~g---rvpViaGvg~~st~~ai~la~~A~~~ 116 (315)
T 3si9_A 44 AFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIE----LCVEQVAK---RVPVVAGAGSNSTSEAVELAKHAEKA 116 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHH----HHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHH----HHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3345566778899999988777764 799988877653 33344432 5789988776543 23 456678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 117 Gadavlv 123 (315)
T 3si9_A 117 GADAVLV 123 (315)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999853
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=80.36 E-value=38 Score=31.59 Aligned_cols=150 Identities=10% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++-.+ +..+|++.=.+-+.|..+.+.+ . ++|+.+ +-... .++.-.+.|
T Consensus 46 ~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~----~--~vpiSI--DT~~~~Va~aAl~aG 117 (294)
T 2y5s_A 46 DDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRP----L--NVPLSI--DTYKPAVMRAALAAG 117 (294)
T ss_dssp THHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGG----G--CSCEEE--ECCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhh----C--CCeEEE--ECCCHHHHHHHHHcC
Confidence 345567788999999999888632 2378888766777777777653 2 467543 33333 456666679
Q ss_pred CcEEE-cCC--CCCHHHHHHHhCCCeeEEccC-CcCcc------CCCH-HHHHHHHHHHHHHhC----C-CCeEEeCCCC
Q 015201 310 VDVIG-LDW--TVDMADGRKRLGNDISVQGNV-DPACL------FSPL-PALTDEIQRVVKCAG----S-RGHILNLGHG 373 (411)
Q Consensus 310 ~d~l~-~d~--~~di~~~~~~~g~~~~l~G~v-d~~~L------~gt~-eeV~~ev~~~i~~~~----~-~gfIls~gc~ 373 (411)
++++| +.. ...+..+.+++|-.+++|-.- .|..+ +.+. +++.+..++.++.+. + ..+|+-||-+
T Consensus 118 a~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~G 197 (294)
T 2y5s_A 118 ADLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFG 197 (294)
T ss_dssp CSEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred CCEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCc
Confidence 99995 322 335777777788777776431 12211 2232 667777777776543 2 4799999988
Q ss_pred CCCCCc-HHHHHHHHHHHHhcC
Q 015201 374 VLVGTP-EEAVAHFFEVGKSMK 394 (411)
Q Consensus 374 i~~~tp-~Eni~a~~~a~~~yg 394 (411)
.. .+. .+|+. +++..+++.
T Consensus 198 f~-kt~~~~n~~-ll~~l~~l~ 217 (294)
T 2y5s_A 198 FG-KAVVDDNYA-LLAALPDTA 217 (294)
T ss_dssp SS-SCTTHHHHH-HHHTGGGGS
T ss_pred cc-ccchHHHHH-HHHHHHHHH
Confidence 74 455 67754 444455554
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=80.17 E-value=13 Score=34.95 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+|++.+....|. .+|.++.++++. ..++.+. +.+|++.++.++.. -+ ....+.
T Consensus 45 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~----~~v~~~~---grvpViaGvg~~st~eai~la~~A~~~ 117 (314)
T 3qze_A 45 SLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR----RVVDQVK---GRIPVIAGTGANSTREAVALTEAAKSG 117 (314)
T ss_dssp HHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHH----HHHHHHT---TSSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHH----HHHHHhC---CCCcEEEeCCCcCHHHHHHHHHHHHHc
Confidence 3345555678899999988877774 799998877654 3334443 25789988776543 23 556678
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 118 Gadavlv 124 (314)
T 3qze_A 118 GADACLL 124 (314)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999853
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=80.14 E-value=8.1 Score=35.52 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEE
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIG 314 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~ 314 (411)
+...++++++.++|++.+.+. .+-..-||..|+-+....++.+.+..++. |+|++-=.. +...++.+.++ +|.+-
T Consensus 37 e~a~~~a~~l~~~Ga~~vk~~-~fkprts~~~~~g~~~egl~~l~~~~~~~--Gl~~~te~~-d~~~~~~l~~~-vd~~k 111 (262)
T 1zco_A 37 EQIMKVAEFLAEVGIKVLRGG-AFKPRTSPYSFQGYGEKALRWMREAADEY--GLVTVTEVM-DTRHVELVAKY-SDILQ 111 (262)
T ss_dssp HHHHHHHHHHHHTTCCEEECB-SSCCCSSTTSCCCCTHHHHHHHHHHHHHH--TCEEEEECC-CGGGHHHHHHH-CSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE-ecccCCCcccccCccHHHHHHHHHHHHHc--CCcEEEeeC-CHHhHHHHHhh-CCEEE
Confidence 344566677788999987533 21111122222222355566667777776 677543222 22247778788 88886
Q ss_pred cCC--CCCHHHHHHH--hCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCC--CCCCCCCcHH--HHHHH
Q 015201 315 LDW--TVDMADGRKR--LGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLG--HGVLVGTPEE--AVAHF 386 (411)
Q Consensus 315 ~d~--~~di~~~~~~--~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~g--c~i~~~tp~E--ni~a~ 386 (411)
+.. ..+..-+++. .|..+.+-- -..+|.+|+.+.+..+...+.+.-.++--| |.-.. +.+ |+.++
T Consensus 112 Iga~~~~n~~ll~~~a~~~kPV~lk~-----G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y--~~~~v~L~ai 184 (262)
T 1zco_A 112 IGARNSQNFELLKEVGKVENPVLLKR-----GMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETA--TRFTLDISAV 184 (262)
T ss_dssp ECGGGTTCHHHHHHHTTSSSCEEEEC-----CTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS--SSSBCCTTHH
T ss_pred ECcccccCHHHHHHHHhcCCcEEEec-----CCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc--ChhhcCHHHH
Confidence 643 3354444443 222222211 123589999988876655432233333334 42122 333 44455
Q ss_pred HHHHHhcCCC
Q 015201 387 FEVGKSMKYD 396 (411)
Q Consensus 387 ~~a~~~yg~~ 396 (411)
....+.++.+
T Consensus 185 ~~lk~~~~~p 194 (262)
T 1zco_A 185 PVVKELSHLP 194 (262)
T ss_dssp HHHHHHBSSC
T ss_pred HHHHhhhCCC
Confidence 4444444543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 411 | ||||
| d1j93a_ | 343 | c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD | 4e-87 | |
| d1r3sa_ | 356 | c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD | 1e-79 |
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Score = 266 bits (680), Expect = 4e-87
Identities = 184/343 (53%), Positives = 244/343 (71%), Gaps = 1/343 (0%)
Query: 54 SDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPW 113
+ PLL+ A +G V RPP W+MRQAGRYM Y+ L EK+P FR+RSE DL+V+ISLQPW
Sbjct: 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPW 60
Query: 114 EAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDLEKLQ-FV 172
+ F PDGVI+FSDILTPL +PFDI + +GPVI P+R+ ++ + EK +V
Sbjct: 61 KVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYV 120
Query: 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSH 232
G++L ILRKEV AAVLGFVGAP+T+A+Y+VEGG+++ +T IK + P VL LL
Sbjct: 121 GEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQK 180
Query: 233 LTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIV 292
++A YI YQ +SGA +QIFDSW +L P +E++S PY+++IV V+ P P++
Sbjct: 181 FATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLI 240
Query: 293 LYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTD 352
LY +G+GG LER+ TGVDV+ LDWTVDMADGR+RLG ++++QGNVDP LF +T+
Sbjct: 241 LYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITN 300
Query: 353 EIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395
I VK AG HILNLGHG+ VGTPEE AHFFE+ K ++Y
Sbjct: 301 RINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 343
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Score = 247 bits (632), Expect = 1e-79
Identities = 103/345 (29%), Positives = 174/345 (50%), Gaps = 8/345 (2%)
Query: 55 DPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWE 114
+ ++AA G P W MRQAGRY+ +R+ F + + +++LQP
Sbjct: 6 NDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLR 64
Query: 115 AFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIQSPIRSEEGLKALH--HIDLEKLQFV 172
F D IIFS IL A G+ + +GP P+R E+ L+ L + +L +V
Sbjct: 65 RFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYV 124
Query: 173 GDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSH 232
++ + R+ + ++GF GAPWT+ TY+VEGG + T K + P LL
Sbjct: 125 FQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQLLRI 184
Query: 233 LTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPI- 291
LT A+ Y++ QV +GA +Q+F+S G L P ++ +++ PYIR++ V+ + E +
Sbjct: 185 LTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLA 244
Query: 292 ----VLYINGNGGFLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPL 347
+++ LE + G +V+GLDWTV R+ +G +++QGN+DP L++
Sbjct: 245 PVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASE 304
Query: 348 PALTDEIQRVVKCAGSRGHILNLGHGVLVGTPEEAVAHFFEVGKS 392
+ +++++ G +I NLGHG+ E V F +
Sbjct: 305 EEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHK 349
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.98 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 98.44 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 94.68 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.89 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 92.54 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 91.6 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 90.67 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 90.35 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 89.83 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 88.4 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 88.11 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 86.57 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 86.53 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 86.44 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 86.32 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 86.2 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 86.14 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 86.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 85.72 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 84.65 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.82 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 83.77 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 81.24 | |
| d3bofa2 | 300 | Cobalamin-dependent methionine synthase MetH, N-te | 80.04 |
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-71 Score=549.51 Aligned_cols=343 Identities=30% Similarity=0.586 Sum_probs=321.6
Q ss_pred CCCcHHHHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccc
Q 015201 51 SSSSDPLLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTP 130 (411)
Q Consensus 51 ~~~~rERv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~ 130 (411)
+.+++||+++|++|+++||+|||+|+|||||+|+|+++++++ +|.|+|.|||+++|++++++++||+|++++++|++++
T Consensus 2 ~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~-~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~ 80 (356)
T d1r3sa_ 2 PELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQ-DFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV 80 (356)
T ss_dssp CCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTS-CHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred CCcchHHHHHHHcCCCCCCCCEEEEecccccCHHHHHHHhcC-CHHHHhcCHHHHHHHHhhHHHhCCcceeeeccccchh
Confidence 457899999999999999999999999999999999999876 7999999999999999999999999999999999999
Q ss_pred cccCCCeeeecCCCCCccCCCCCChhhhhcCCCCCc-cc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCC
Q 015201 131 LPAFGVPFDIEEVRGPVIQSPIRSEEGLKALHHIDL-EK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGT 208 (411)
Q Consensus 131 ~ea~G~~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~-~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~ 208 (411)
+++||+++.|.++.+|.+..++.+.+|+.++..++. .+ ++.++++++++++++++++|++|+++||||+++++++|++
T Consensus 81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~ 160 (356)
T d1r3sa_ 81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG 160 (356)
T ss_dssp HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred hhhcCceeeecCCCCccCCcccccchhhhhcccchhhhhhhHHHHHHHHHHHHHhccccccceeeechHHHHHHHHhccc
Confidence 999999999999888988778888888888876543 23 8999999999999999999999999999999999998877
Q ss_pred CccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC--
Q 015201 209 TRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-- 286 (411)
Q Consensus 209 ~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-- 286 (411)
.+++++++.+|+++||.+|++++++++.+++|+++|+++|||+|+++|+|++.+||++|++|+.||++++++.++++.
T Consensus 161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~ 240 (356)
T d1r3sa_ 161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 (356)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHhhcccccceecccccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999998652
Q ss_pred ---CCCCEEEEecCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhC
Q 015201 287 ---PETPIVLYINGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAG 362 (411)
Q Consensus 287 ---~g~~~~~H~CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~ 362 (411)
.++ ..+|.||+.. .++.+.++|+|++++|+.+|+.++++.+|++++++||+||..|.+++|+|+++++++++.++
T Consensus 241 ~~~~~~-~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~ 319 (356)
T d1r3sa_ 241 AGLAPV-PMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFG 319 (356)
T ss_dssp TTCCCC-CEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHC
T ss_pred ccCCCc-eeeecchhHHHHHHHHhccCcccccccccCCHHHHHHHhCCCeeEEeCCCHHHHcCCHHHHHHHHHHHHHHhC
Confidence 123 3678999887 68999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCeEEeCCCCCCCCCcHHHHHHHHHHHHhcCC
Q 015201 363 SRGHILNLGHGVLVGTPEEAVAHFFEVGKSMKY 395 (411)
Q Consensus 363 ~~gfIls~gc~i~~~tp~Eni~a~~~a~~~yg~ 395 (411)
++|||+++||+|+|+||+|||++|++++|+||+
T Consensus 320 ~~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k 352 (356)
T d1r3sa_ 320 PHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSR 352 (356)
T ss_dssp SSSEEEEESSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCCCcCCCCCHHHHHHHHHHHHHhCH
Confidence 889999999999999999999999999999985
|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Probab=100.00 E-value=1.5e-69 Score=533.29 Aligned_cols=337 Identities=53% Similarity=0.969 Sum_probs=318.5
Q ss_pred HHHHHHcCCCCCCcccccchhhhhhHHHHHHHHccCCChhHhhcCHHHHHHhhhhhHHHhCCCEEeeccCcccccccCCC
Q 015201 57 LLVKAAKGHPVSRPPAWMMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVQISLQPWEAFHPDGVIIFSDILTPLPAFGV 136 (411)
Q Consensus 57 Rv~~al~gk~~DRvPv~~~~~a~~~~~~y~~~~~~~~~~~e~~~d~e~~ae~~~~~~~~f~~D~~~~~~d~~~~~ea~G~ 136 (411)
.+++||+||++||+|||+|+|||||+|+|++++.++.+|.|+|.|||.+++++++++++||+|++++++|+++++++||+
T Consensus 4 ~~l~al~g~~~dr~PVw~mrqaGr~~pey~~~r~~~~~f~e~~~~pe~~ae~~l~~~~~f~~D~~i~fsDil~~~ea~G~ 83 (343)
T d1j93a_ 4 LLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPWKVFRPDGVILFSDILTPLSGMNI 83 (343)
T ss_dssp HHHHHHHTCCCSSCCBCCSCCCTTTTTHHHHHHHSSCSTTTTTTCHHHHHHHHHHHHHHHCCSEEECCCCTTTHHHHTTC
T ss_pred HHHHHHcCCCCCCCCEEEEecccccCHHHHHHHHhcCcHHHHhcCHHHHHHHHHhHHHHcCCCeeeeecccchhHHHhcC
Confidence 68999999999999999999999999999999988767999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccCCCCCChhhhhcCCCCCccc-hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHH
Q 015201 137 PFDIEEVRGPVIQSPIRSEEGLKALHHIDLEK-LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTI 215 (411)
Q Consensus 137 ~~~~~~~~~p~~~~pi~~~eD~~~l~~~d~~~-~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~ 215 (411)
++.+.++.+|++..++.+.++.+++..++++. ++.++++++.+++++++++|++|+++||||++++++++.+.++++++
T Consensus 84 ~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~~~l~~~~~ligf~ggP~Tla~yl~~~~~~~~~~~~ 163 (343)
T d1j93a_ 84 PFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKI 163 (343)
T ss_dssp CEEEETTTEEEESSCCCSHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHTTSSEEEEEEECHHHHHHHHHHSBCCSSCHHH
T ss_pred ccccccCCCccccccccchhhhcccccccchhcccchHHHHHHHHHhcccccceeeehHhHHHHHHHHHccccccchhhh
Confidence 99999888888888888888888888888766 99999999999999999999999999999999999988667788999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Q 015201 216 KSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYI 295 (411)
Q Consensus 216 l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~ 295 (411)
+.+++++|+.++++++.+++.+++|+++|+++|||+|+++|+|++.+||++|++|+.||++++++.+++.+++.|+ +|.
T Consensus 164 ~~~~~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 242 (343)
T d1j93a_ 164 KRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL-ILY 242 (343)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE-EEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCce-eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988767764 566
Q ss_pred cCCcc-cHhHHhcCCCcEEEcCCCCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 296 NGNGG-FLERMKGTGVDVIGLDWTVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 296 CG~~~-~l~~~~e~g~d~l~~d~~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
|+... .++++.+.|++++++|+.+|+.++++.+|++++++||+||..|.||+|+|+++++++++.++++|||+++||++
T Consensus 243 ~~~~~~~~~~~~~~~~~~is~d~~~~l~~a~~~~~~~~~iqGNldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~~lGhgi 322 (343)
T d1j93a_ 243 ASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI 322 (343)
T ss_dssp CSSCTTTGGGGGGGCCSEEECCTTSCHHHHHHHTCSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCC
T ss_pred cccccchhhhhhccCccccccccccchHHHHHHhCCCeEEEeCCChHHHcCCHHHHHHHHHHHHHhcCCCCcEEECCCCC
Confidence 66555 68999999999999999999999999999999999999998888999999999999999999889999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcC
Q 015201 375 LVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 375 ~~~tp~Eni~a~~~a~~~yg 394 (411)
+++||+|||+||++++|+|+
T Consensus 323 ~~~Tp~eNv~a~v~~vr~~~ 342 (343)
T d1j93a_ 323 KVGTPEENFAHFFEIAKGLR 342 (343)
T ss_dssp CTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999995
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.98 E-value=3.1e-09 Score=102.67 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=131.9
Q ss_pred eeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCCC-CC--C
Q 015201 187 AAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWGG-QL--P 263 (411)
Q Consensus 187 ~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~~-~i--S 263 (411)
.++...+.||.+++...... -|.+.+ +++..++....+.++.+.++|++.|++-|+.-. .+ .
T Consensus 157 ~~~k~~i~gp~~l~~~~~~~------------~y~~~~---e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~ 221 (365)
T d1u1ha2 157 RPMKGMLTGPVTILNWSFVR------------NDQPRH---ETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLR 221 (365)
T ss_dssp SCBEEEEECHHHHHHTSEEC------------SSSCHH---HHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSS
T ss_pred ccccccccceeEEeeecccc------------CCCCHH---HHHHHHHHHHHHHHHHHHhcCCcEEEeCchHHhhhhccc
Confidence 34556678998877543321 134443 556667788888889999999999999997543 22 2
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc-cHhHHhcCCCcEEEcCCCCC----HHHHHHHhC-CCee
Q 015201 264 ---PHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG-FLERMKGTGVDVIGLDWTVD----MADGRKRLG-NDIS 333 (411)
Q Consensus 264 ---p~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~-~l~~~~e~g~d~l~~d~~~d----i~~~~~~~g-~~~~ 333 (411)
++.+.++....++..++.+.. +..+.+|.| |+.. .++.+.+++++.++++.... +...+..++ ++..
T Consensus 222 ~~~~~~~~~~~~~~~n~~~~~~~~---~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l 298 (365)
T d1u1ha2 222 KSEHAFYLDWAVHSFRITNCGVQD---STQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGI 298 (365)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTSCT---TSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEE
T ss_pred cccHHHHHHHHHHHHHHHHhcccc---cceEEEEecccccchhHHHHhcCCcccchhhhccCchHHHHHHHhhCCCCCEE
Confidence 333334443333333333322 345788999 5655 68999999999999876431 222232333 4677
Q ss_pred EEccCCcCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCCCC---CCcHHHHHHHHHHHHhcC
Q 015201 334 VQGNVDPACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGVLV---GTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 334 l~G~vd~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i~~---~tp~Eni~a~~~a~~~yg 394 (411)
..|-||.... .-++|+|.+.+++.++..+....+++|+||+.. +.-.+++++|+++++...
T Consensus 299 ~~GVVd~r~~~~E~~e~v~~ri~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr 363 (365)
T d1u1ha2 299 GPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIR 363 (365)
T ss_dssp EECCSCTTSSSCCCHHHHHHHHHHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHhCChhhEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 7899999865 589999999999999999878999999999864 333468889999998753
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.44 E-value=5.2e-07 Score=87.41 Aligned_cols=174 Identities=13% Similarity=0.069 Sum_probs=120.7
Q ss_pred EEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCHHHH
Q 015201 189 VLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESGAHCIQIFDSWG-GQLPPHMW 267 (411)
Q Consensus 189 v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G~d~i~i~D~~~-~~iSp~~f 267 (411)
+..++.||+|.+...... .+. .-+.++ .++++.+.....+.++.+.++|++.|++-|+.- .-++++ +
T Consensus 150 ~Kpvl~GP~T~l~l~k~~---~~~-----~~~~~~---~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~-~ 217 (394)
T d1u1ha1 150 TVPVLVGPVSYLLLSKAA---KGV-----DKSFEL---LSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQ-K 217 (394)
T ss_dssp CEEEEECHHHHHHTCEEC---TTC-----CTTCCG---GGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHH-H
T ss_pred cccccCCHHHHHHHhccc---CCC-----ccccCH---HHHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHH-H
Confidence 455667999976532211 000 012233 356777788888888899999999999999854 455654 4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEec-CCcc--cHhHHhcC-CCcEEEcCCC---CCHHHHHHHhC-CCeeEEccCC
Q 015201 268 EQWSEPYIREIVSLVRTKCPETPIVLYIN-GNGG--FLERMKGT-GVDVIGLDWT---VDMADGRKRLG-NDISVQGNVD 339 (411)
Q Consensus 268 ~ef~~Py~k~i~~~i~~~~~g~~~~~H~C-G~~~--~l~~~~e~-g~d~l~~d~~---~di~~~~~~~g-~~~~l~G~vd 339 (411)
++.+...+.+ +.+..++.++.+|+| |+.. ..+.+... ++|++++|.. .++......++ ++....|-||
T Consensus 218 ~~~~~~ay~~----l~~~~~~~~i~l~tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVd 293 (394)
T d1u1ha1 218 LQAFTGAYAE----LESTLSGLNVLVETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVD 293 (394)
T ss_dssp HHHHHHHHHH----HTTTTTTSEEEEECCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEEC
T ss_pred HHHHHHHHHH----HHhhcCCCCceEEeccCCCchhhHHHHhhcCCCCeeEEEeecCccchHHHHHhCCcccEEEeeeEe
Confidence 5554444444 433333567899999 7764 45666664 6999998653 23555555555 5666779999
Q ss_pred cCcc-CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC---CCCC
Q 015201 340 PACL-FSPLPALTDEIQRVVKCAGSRGHILNLGHGV---LVGT 378 (411)
Q Consensus 340 ~~~L-~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i---~~~t 378 (411)
.... .-+++++.+.++++.+..+..+.+++|+|++ |.+.
T Consensus 294 grniw~ed~e~v~~~i~~~~~~v~~erl~lspsCsLlh~P~~~ 336 (394)
T d1u1ha1 294 GRNIWANDFAASLSTLQALEGIVGKDKLVVSTSCSLLHTAVDL 336 (394)
T ss_dssp SSSCBCCCHHHHHHHHHHHHHHSCSSCEEEEESSCGGGSCSCG
T ss_pred cCCCCcCCHHHHHHHHHHHHHhCCcccEEEeCCCCCcCCCCcC
Confidence 9865 6899999999999999998889999999996 5544
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=94.68 E-value=0.39 Score=42.58 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCC
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTG 309 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g 309 (411)
+..++.++.+++.|||.|-++.-+ +..+|++.-.+-+.|..+.+.+.. +.+ +=++-... ..+...+.|
T Consensus 42 ~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~-----~~~--iSIDT~~~~Va~~al~~G 114 (273)
T d1tx2a_ 42 DAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-----KLP--ISIDTYKAEVAKQAIEAG 114 (273)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-----CSC--EEEECSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccc-----eEE--EehHHhhHHHHHHHHHcC
Confidence 355667788899999999887532 248999988888888887765443 344 33333333 357778899
Q ss_pred CcEEE-cCC-C--CCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHHHHHHHHH---hC-C-CCeEEeCCCCCCCCCcH
Q 015201 310 VDVIG-LDW-T--VDMADGRKRLGNDISVQGNVDPACLFSPLPALTDEIQRVVKC---AG-S-RGHILNLGHGVLVGTPE 380 (411)
Q Consensus 310 ~d~l~-~d~-~--~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~---~~-~-~gfIls~gc~i~~~tp~ 380 (411)
+++++ +.. . ..+.++.+.++-.+++|-+-....-....+++.....+.++. .| + ...|+-||-+.. .+..
T Consensus 115 ~~iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFg-K~~~ 193 (273)
T d1tx2a_ 115 AHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFA-KTPE 193 (273)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCHH
T ss_pred CeEEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCcc-chHH
Confidence 99997 432 2 247777788887788874321111112334444444333332 23 3 689999998864 4556
Q ss_pred HHHHHHH
Q 015201 381 EAVAHFF 387 (411)
Q Consensus 381 Eni~a~~ 387 (411)
.|+.-+.
T Consensus 194 ~n~~ll~ 200 (273)
T d1tx2a_ 194 QNLEAMR 200 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6766543
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.38 Score=42.79 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|+++|.+....|- .+|.+++++++ +.+.+..+. .+|++.++.+... .+ ....+.
T Consensus 24 ~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~----~~~~~~~~~---~~pvi~gv~~~s~~~~i~~a~~a~~~ 96 (295)
T d1hl2a_ 24 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVL----EIVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRY 96 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHH----HHHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHH----hhhHHhhcc---ccceeeccccchhhHHHHHHHHHHhc
Confidence 3445566777899999988877664 79999987755 333444443 4677776655532 23 444567
Q ss_pred CCcEEE
Q 015201 309 GVDVIG 314 (411)
Q Consensus 309 g~d~l~ 314 (411)
|+|.+.
T Consensus 97 Gad~~~ 102 (295)
T d1hl2a_ 97 GFDAVS 102 (295)
T ss_dssp TCSEEE
T ss_pred CCceee
Confidence 888764
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=92.54 E-value=0.73 Score=39.43 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCC-
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDW- 317 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~- 317 (411)
+.++..++.|++.|++=+-...-.+.+.+.+.. +++.+.++++ ++++++|. .++...++|.|++|+..
T Consensus 34 ~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a----~~l~~lc~~~--~~~liInd-----~~~lA~~~~adGvHl~~~ 102 (226)
T d2tpsa_ 34 TVVQKALKGGATLYQFREKGGDALTGEARIKFA----EKAQAACREA--GVPFIVND-----DVELALNLKADGIHIGQE 102 (226)
T ss_dssp HHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHH----HHHHHHHHHH--TCCEEEES-----CHHHHHHHTCSEEEECTT
T ss_pred HHHHHHHHCCCCEEEEcCCCccchhHHHHHHHH----HHHHHHHHHh--CCeEEEcC-----CHHHHhhccCCEEEeccc
Confidence 345677889999999987666667777665554 6777777777 67888774 46666778999999854
Q ss_pred CCCHHHHHHHhCCC
Q 015201 318 TVDMADGRKRLGND 331 (411)
Q Consensus 318 ~~di~~~~~~~g~~ 331 (411)
..++.++++.+++.
T Consensus 103 d~~~~~~r~~~~~~ 116 (226)
T d2tpsa_ 103 DANAKEVRAAIGDM 116 (226)
T ss_dssp SSCHHHHHHHHTTS
T ss_pred cchhhhhhhcccce
Confidence 46888889888864
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=91.60 E-value=0.83 Score=40.33 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhc
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKG 307 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e 307 (411)
+.+.++++.+++.|++++++....|- .+|.++..+++ +.+.+.... .+|++.+.-+... .+ ....+
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~----~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~ 96 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALY----RHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATE 96 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHH----HHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHH----HHHHHHhCC---CceEEEecCcccHHHHHHHHHHHHH
Confidence 34456666778999999988777664 79999977753 333344432 5687776554432 23 45667
Q ss_pred CCCcEEEc
Q 015201 308 TGVDVIGL 315 (411)
Q Consensus 308 ~g~d~l~~ 315 (411)
.|+|.+.+
T Consensus 97 ~Gad~ilv 104 (292)
T d1xkya1 97 VGVDAVML 104 (292)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 89998754
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=90.67 E-value=4.8 Score=34.93 Aligned_cols=150 Identities=14% Similarity=0.066 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGV 310 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~ 310 (411)
..++.++.+++.|||.|-++.-+ +..+|++.=.+-+.|.++.+ ++. ++ .+=++-... ......+.|+
T Consensus 27 ~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l----~~~--~~--~iSIDT~~~eVa~~al~~Ga 98 (264)
T d1ad1a_ 27 SAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAI----VGF--DV--KISVDTFRSEVAEACLKLGV 98 (264)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHH----TTS--SS--EEEEECSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhh----ccc--Cc--ccchhhhhHHHHHHHHhcCC
Confidence 44566778899999999888632 24789887666677776544 333 33 344444444 3577888999
Q ss_pred cEEE-cCC---CCCHHHHHHHhCCCeeEEccCCcCcc-C-CCHHHHHHHHHHHHHHh---C-C-CCeEEeCCCCCCCCCc
Q 015201 311 DVIG-LDW---TVDMADGRKRLGNDISVQGNVDPACL-F-SPLPALTDEIQRVVKCA---G-S-RGHILNLGHGVLVGTP 379 (411)
Q Consensus 311 d~l~-~d~---~~di~~~~~~~g~~~~l~G~vd~~~L-~-gt~eeV~~ev~~~i~~~---~-~-~gfIls~gc~i~~~tp 379 (411)
+++| +.. ..++.++.+.++-.+++|=. +... . ...++|.+.....++.+ | + ...|+-||=++. .++
T Consensus 99 ~iINDVs~g~~d~~~~~~va~~~~~~ilmH~--~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFg-Kt~ 175 (264)
T d1ad1a_ 99 DIINDQWAGLYDHRMFQVVAKYDAEIVLMHN--GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFA-KTR 175 (264)
T ss_dssp CEEEETTTTSSCTHHHHHHHHTTCEEEEECC--CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS-CCH
T ss_pred cEeeccccccccccHHHHHhhcCcceeeeee--ccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCcc-ccc
Confidence 9997 532 23577788888877777642 2111 1 22456666666655433 2 3 689999998874 677
Q ss_pred HHHHHHHH--HHHHhcCCC
Q 015201 380 EEAVAHFF--EVGKSMKYD 396 (411)
Q Consensus 380 ~Eni~a~~--~a~~~yg~~ 396 (411)
.+|++-+- +..+.+|.+
T Consensus 176 ~~n~~ll~~l~~~~~~g~P 194 (264)
T d1ad1a_ 176 NEEAEVMARLDELVATEYP 194 (264)
T ss_dssp HHHHHHHHCHHHHHTTCSC
T ss_pred hhHHHHHHHHHHhhccCCc
Confidence 88888775 445566543
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=90.35 E-value=0.67 Score=40.18 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--------cHhHHh
Q 015201 235 QAIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--------FLERMK 306 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--------~l~~~~ 306 (411)
+...+|++.+.++|...|+. ++.+|+.-.+-..+.++++++.+++. |..+++-+-.+.- .++.+.
T Consensus 17 e~~~~yi~~a~~~Gf~~iFT-----SL~~~e~~~~~~~~~~~~l~~~a~~~--g~~vi~DIsp~~l~~lg~s~~dl~~~~ 89 (244)
T d1x7fa2 17 EKDMAYISAAARHGFSRIFT-----CLLSVNRPKEEIVAEFKEIINHAKDN--NMEVILDVAPAVFDQLGISYSDLSFFA 89 (244)
T ss_dssp HHHHHHHHHHHTTTEEEEEE-----EECCC--------HHHHHHHHHHHHT--TCEEEEEECTTCC------CCCTHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEe-----cCccCCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcCHHHHHHhCCCHHHHHHHH
Confidence 44567888999999998853 45778877788889999999999998 6777877776541 257788
Q ss_pred cCCCcEEEcCCCCCHHHHHHHhCC--CeeEEccCCcCccCCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC-C---CCCcH
Q 015201 307 GTGVDVIGLDWTVDMADGRKRLGN--DISVQGNVDPACLFSPLPALTDEIQRVVKCAGSRGHILNLGHGV-L---VGTPE 380 (411)
Q Consensus 307 e~g~d~l~~d~~~di~~~~~~~g~--~~~l~G~vd~~~L~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i-~---~~tp~ 380 (411)
++|++++-+|...|..+..+..-. .+.+.=|..+ .| +++.+++....+..-+.+. |+. | .|-+.
T Consensus 90 ~lGi~glRlD~Gf~~~e~a~ms~n~~~l~I~LNaSt----~t-----~~l~~l~~~~~n~~~l~ac-HNFYPr~~TGLs~ 159 (244)
T d1x7fa2 90 ELGADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSN----DI-----AYLENILSHQANKSALIGC-HNFYPQKFTGLPY 159 (244)
T ss_dssp HHTCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTS----CS-----SHHHHHTTSSCCGGGEEEE-CCCBCSTTCSBCH
T ss_pred HCCCCEEEEcCCCChHHHHHHhcCCcCCEEEEECCc----CH-----HHHHHHHHcCCChhheEEe-eccCCCCCCCCCH
Confidence 999999999998887777765432 2334333332 22 2345556555444445543 555 3 25688
Q ss_pred HHHHHHHHHHHhcCCC
Q 015201 381 EAVAHFFEVGKSMKYD 396 (411)
Q Consensus 381 Eni~a~~~a~~~yg~~ 396 (411)
|-+...-+..|+||-.
T Consensus 160 ~~f~~~n~~~k~~gi~ 175 (244)
T d1x7fa2 160 DYFIRCSERFKKHGIR 175 (244)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999999843
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=89.83 E-value=2.1 Score=37.62 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=47.0
Q ss_pred HHHHHHHHHHh-CCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 237 IADYIIYQVES-GAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 237 ~~~~~~~~~e~-G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
+.++++.+++. |++++++.-..|. .+|.++.++++. ...+..+. .+|++.|+-+... .+ ....+.
T Consensus 26 l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~----~~~~~~~~---~~~vi~gv~~~s~~~~iela~~a~~~ 98 (293)
T d1f74a_ 26 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR----IAKDEAKD---QIALIAQVGSVNLKEAVELGKYATEL 98 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHH----HHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhh----eeeccccC---ccccccccccccHHHHHHHHHHHHHc
Confidence 34455567766 9999988776664 799999887654 33444432 5788877766543 23 344567
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 99 Gad~i~~ 105 (293)
T d1f74a_ 99 GYDCLSA 105 (293)
T ss_dssp TCSEEEC
T ss_pred CCCEeec
Confidence 8888753
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=88.40 E-value=1.1 Score=39.57 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccc-H-hHH--hcCCCcEE
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGF-L-ERM--KGTGVDVI 313 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~-l-~~~--~e~g~d~l 313 (411)
.+.++.+.++|+|.|.++|+.| .+.|+...+++ +.+.+.+ ++++++-+|.+-+... + ..+ .+.|++.+
T Consensus 164 ~~~~~~~~~~G~~~i~l~DT~G-~~~P~~v~~li----~~l~~~~---~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~i 235 (303)
T d1rqba2 164 VKLAGQLLDMGADSIALKDMAA-LLKPQPAYDII----KAIKDTY---GQKTQINLHCHSTTGVTEVSLMKAIEAGVDVV 235 (303)
T ss_dssp HHHHHHHHHTTCSEEEEEETTC-CCCHHHHHHHH----HHHHHHH---CTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhcCCcEEeecCccc-hhhhHHHHHHH----HHHHhhc---CCcccceeccCchHHHHHHHHHHHHHcCCCEE
Confidence 3455677789999999999885 57887766643 3333333 2467889999888752 3 333 35799988
Q ss_pred E
Q 015201 314 G 314 (411)
Q Consensus 314 ~ 314 (411)
.
T Consensus 236 d 236 (303)
T d1rqba2 236 D 236 (303)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=88.11 E-value=2.4 Score=37.21 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cHhH---HhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FLER---MKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~~---~~e~ 308 (411)
.+.+.++.+++.|++++++....|. .+|.++.++++ +..++..+. .+|++.|+.+... .++. ..+.
T Consensus 23 ~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~----~~~~~~~~~---~~~vi~g~~~~s~~~~i~~~~~a~~~ 95 (292)
T d2a6na1 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVV----MMTLDLADG---RIPVIAGTGANATAEAISLTQRFNDS 95 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHH----HHHHHHHTT---SSCEEEECCCSSHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHh----hhhhhhccc---cceeEeecccchHHHHHHHhccHHhc
Confidence 3445566778899999988887774 69999877753 344455442 5788888766643 2333 4457
Q ss_pred CCcEEE
Q 015201 309 GVDVIG 314 (411)
Q Consensus 309 g~d~l~ 314 (411)
|+|.+-
T Consensus 96 Gad~~~ 101 (292)
T d2a6na1 96 GIVGCL 101 (292)
T ss_dssp SCCEEE
T ss_pred CCccee
Confidence 888764
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=86.57 E-value=3 Score=34.63 Aligned_cols=81 Identities=14% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcccHhHHhcCCCcEEEcCCC
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGGFLERMKGTGVDVIGLDWT 318 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~~l~~~~e~g~d~l~~d~~ 318 (411)
+.++..+++|++.|++-+.. .|.+.+.++ .+++.+..+++ +.++++|. .++...++|+|++|+...
T Consensus 21 ~~v~~~l~~Gv~~vqlR~k~---~~~~e~~~~----a~~l~~i~~~~--~~~liind-----~~~lA~~~~adGvHl~~~ 86 (206)
T d1xi3a_ 21 ESVREALEGGATAIQMRIKN---APTREMYEI----GKTLRQLTREY--DALFFVDD-----RVDVALAVDADGVQLGPE 86 (206)
T ss_dssp HHHHHHHHTTCSEEEECCCS---CCHHHHHHH----HHHHHHHHHHT--TCEEEEES-----CHHHHHHHTCSEEEECTT
T ss_pred HHHHHHHHcCCCEEEEcCCC---CCHHHHHHH----HHHHHHHHHHc--CCeEEech-----hHHHHHhccCceEeeccc
Confidence 44667789999999875442 445555544 35666666665 57777653 567777889999998543
Q ss_pred -CCHHHHHHHhCCCeeE
Q 015201 319 -VDMADGRKRLGNDISV 334 (411)
Q Consensus 319 -~di~~~~~~~g~~~~l 334 (411)
.+. ..++.++.+..+
T Consensus 87 ~~~~-~~~~~~~~~~ii 102 (206)
T d1xi3a_ 87 DMPI-EVAKEIAPNLII 102 (206)
T ss_dssp SCCH-HHHHHHCTTSEE
T ss_pred cccH-hhhhhccccccc
Confidence 344 444455655433
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=86.53 E-value=3.1 Score=34.40 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCEEE-EecC-CCCCCCHHHHHHHHHHH------------HHHHHHHHHhhCCCCCEEEEecCCcc--cHh
Q 015201 240 YIIYQVESGAHCIQ-IFDS-WGGQLPPHMWEQWSEPY------------IREIVSLVRTKCPETPIVLYINGNGG--FLE 303 (411)
Q Consensus 240 ~~~~~~e~G~d~i~-i~D~-~~~~iSp~~f~ef~~Py------------~k~i~~~i~~~~~g~~~~~H~CG~~~--~l~ 303 (411)
-++.+.++|||.+= ++.+ +--.+||+..++..... ..++.+.++.. +. -++..+|+.. .+.
T Consensus 13 d~~~~~~~gaD~iGfif~~~SpR~Vs~~~a~~i~~~~~~~~V~Vfv~~~~~~i~~~~~~~--~~-d~iQlHG~e~~~~~~ 89 (198)
T d1piia1 13 DAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVL--SL-AAVQLHGNEEQLYID 89 (198)
T ss_dssp HHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEEEEEESSCCHHHHHHHHHHH--TC-SEEEECSCCCHHHHH
T ss_pred HHHHHHhCCCCEEEEEccCCCCCCcCHHHHHHhhhhcccccceeeeccchhhHHHhhhcc--cc-cceeecCCccHHHHH
Confidence 35566788999863 3333 33389999999975432 33455555554 22 2556667653 344
Q ss_pred HHhcC---CCcEE--------------------EcCC-------CCCHHHHHHHhCCCeeEEccCCcCccCCCHHHHHHH
Q 015201 304 RMKGT---GVDVI--------------------GLDW-------TVDMADGRKRLGNDISVQGNVDPACLFSPLPALTDE 353 (411)
Q Consensus 304 ~~~e~---g~d~l--------------------~~d~-------~~di~~~~~~~g~~~~l~G~vd~~~L~gt~eeV~~e 353 (411)
.+.+. .+..+ -+|. ..|..-++..-.....+.||++| +.|.+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~~~~~~~~~LAGGl~~-------~Nv~~- 161 (198)
T d1piia1 90 TLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGA-------DNCVE- 161 (198)
T ss_dssp HHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGTTSCCTTEEEESSCCT-------TTHHH-
T ss_pred HHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhcccccceeEEecCCCH-------HHHHH-
Confidence 44331 11111 1110 12333232222233445555554 33433
Q ss_pred HHHHHHHhCCCCeEEeCCCCCCCCC-cHHHHHHHHHHHHhc
Q 015201 354 IQRVVKCAGSRGHILNLGHGVLVGT-PEEAVAHFFEVGKSM 393 (411)
Q Consensus 354 v~~~i~~~~~~gfIls~gc~i~~~t-p~Eni~a~~~a~~~y 393 (411)
+++ .++.|.=+++|-...||. +++.|+++++++|.|
T Consensus 162 ---a~~-~~p~gvDvsSGvE~~pG~KD~~ki~~f~~~vr~~ 198 (198)
T d1piia1 162 ---AAQ-TGCAGLDFNSAVESQPGIKDARLLASVFQTLRAY 198 (198)
T ss_dssp ---HHT-TCCSEEEECGGGEEETTEECHHHHHHHHHHHHCC
T ss_pred ---HHh-cCCCEEEeCCcccCCCCCcCHHHHHHHHHHHhcC
Confidence 343 456678888887777776 889999999999987
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.44 E-value=9.4 Score=33.02 Aligned_cols=152 Identities=10% Similarity=0.063 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc-cHhHHhcCCC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSW----GGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG-FLERMKGTGV 310 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~----~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~-~l~~~~e~g~ 310 (411)
..++.++.+++.|||.|-++.-+ +..+|++.=.+-+.|.++ .+++. +.++ =++-... ..+...+.|+
T Consensus 26 ~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~----~~~~~--~~~i--SIDT~~~~Va~~al~~Ga 97 (270)
T d1eyea_ 26 DAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVK----ELAAQ--GITV--SIDTMRADVARAALQNGA 97 (270)
T ss_dssp HHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHH----HHHHT--TCCE--EEECSCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceee----eeccc--ceee--chHhhhHHHHHHHHhcCC
Confidence 44566778889999999887532 237877765555667654 44554 4443 3444444 3577888999
Q ss_pred cEEE-cC---CCCCHHHHHHHhCCCeeEEccC--CcCcc-----C-CCHHHHHHHHHHHHHHh---C-C-CCeEEeCCCC
Q 015201 311 DVIG-LD---WTVDMADGRKRLGNDISVQGNV--DPACL-----F-SPLPALTDEIQRVVKCA---G-S-RGHILNLGHG 373 (411)
Q Consensus 311 d~l~-~d---~~~di~~~~~~~g~~~~l~G~v--d~~~L-----~-gt~eeV~~ev~~~i~~~---~-~-~gfIls~gc~ 373 (411)
+++| +. ....+.++...++-.+++|=+- ++... + .-.+++.....+.++.+ + + .+.|+-||-+
T Consensus 98 ~iINDvsg~~~d~~m~~~~a~~~~~~vlmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiG 177 (270)
T d1eyea_ 98 QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLG 177 (270)
T ss_dssp CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTT
T ss_pred eEEEeccccccchhHHhhhhhcccceeeeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEccccc
Confidence 9997 43 2235888888888777776432 22221 1 22345555544444432 2 3 5799999988
Q ss_pred CCCCCcHHHHHHHHH--HHHhcCCC
Q 015201 374 VLVGTPEEAVAHFFE--VGKSMKYD 396 (411)
Q Consensus 374 i~~~tp~Eni~a~~~--a~~~yg~~ 396 (411)
.. .++.+|+.-+-+ ..+.+|.+
T Consensus 178 Fg-Kt~~~n~~lL~~l~~~~~~g~P 201 (270)
T d1eyea_ 178 FA-KTAQHNWAILHALPELVATGIP 201 (270)
T ss_dssp SS-CCHHHHHHHHHTHHHHHTTSSC
T ss_pred cC-cccchHHHHHHHHHhhccCCCc
Confidence 75 566777776644 45566643
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=86.32 E-value=1.1 Score=39.58 Aligned_cols=73 Identities=15% Similarity=0.298 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|++++++....|. .+|.++.++.+ +...+... +.+|++.++-+... .+ ....+.
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~----~~~~~~~~---~~~~vi~gv~~~st~~ai~~a~~A~~~ 95 (295)
T d1o5ka_ 23 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLV----SRTLEIVD---GKIPVIVGAGTNSTEKTLKLVKQAEKL 95 (295)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHH----HHHHHHHT---TSSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHh----hhhccccc---cCCceEeecccccHHHHHHHHHHHHHc
Confidence 3445666778999999988877764 79999977643 34444443 24677766543332 23 445567
Q ss_pred CCcEEEc
Q 015201 309 GVDVIGL 315 (411)
Q Consensus 309 g~d~l~~ 315 (411)
|+|++.+
T Consensus 96 Gad~v~v 102 (295)
T d1o5ka_ 96 GANGVLV 102 (295)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 8888743
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=86.20 E-value=6.5 Score=34.13 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEec----CCc-c--cHhHHhcCCC
Q 015201 238 ADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYIN----GNG-G--FLERMKGTGV 310 (411)
Q Consensus 238 ~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~C----G~~-~--~l~~~~e~g~ 310 (411)
++.++...++|+|++.+.-++-...|.+ -+.-|++++.+.. +.|++++.. |.. . .+..+.+.+
T Consensus 86 i~~~~~a~~~Gad~~~~~pP~~~~~~~~----~i~~~f~~v~~~~-----~~pi~iYn~P~~~g~~~~~e~~~~L~~~p- 155 (292)
T d2a6na1 86 ISLTQRFNDSGIVGCLTVTPYYNRPSQE----GLYQHFKAIAEHT-----DLPQILYNVPSATGCDLLPETVGRLAKVK- 155 (292)
T ss_dssp HHHHHTTTTSSCCEEEEECCCSSCCCHH----HHHHHHHHHHHTC-----SSCEEEEECHHHHSCCCCHHHHHHHHTST-
T ss_pred HHHhccHHhcCCcceeccCCCCCCCCHH----HHHHHHHHHhhcc-----CCcEEEEEeccccCCccCHHHHHHHhcCC-
Confidence 3445666788999998877765556654 3566888888776 468887764 322 2 245566654
Q ss_pred cEEEc-CC---CCCHHHHHHHhCCCeeEEccCCc
Q 015201 311 DVIGL-DW---TVDMADGRKRLGNDISVQGNVDP 340 (411)
Q Consensus 311 d~l~~-d~---~~di~~~~~~~g~~~~l~G~vd~ 340 (411)
+++.+ +. .......++..+++..+.++-+.
T Consensus 156 nv~giK~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (292)
T d2a6na1 156 NIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDA 189 (292)
T ss_dssp TEEEEEECSCCTTHHHHHHTTSCTTSEEEECCGG
T ss_pred CEEEEEeccCcchhhhhhhhhcCCccEEeecchh
Confidence 55544 22 22344555556666666655444
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.14 E-value=6.6 Score=34.51 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHhCCceeEEEecccHHHHHHHHHcCCCCccHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015201 169 LQFVGDSLKILRKEVGEHAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYIIYQVESG 248 (411)
Q Consensus 169 ~~~~~eaik~l~~~~~~~~~v~~~~~gPft~a~~l~gg~~~~~~e~~l~~l~~~Pe~v~~ll~~~~d~~~~~~~~~~e~G 248 (411)
++...+++++..+++|..+-....+.+|.. .+++.++...++|
T Consensus 70 v~~~~~a~~~a~~~tG~~~~Ya~Nit~~~~-------------------------------------~m~~ra~~~~~~G 112 (291)
T d2d69a1 70 VRKLYRVRDRVEAETGETKEYLINITGPVN-------------------------------------IMEKRAEMVANEG 112 (291)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEECBCCSSHH-------------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCeeEEEEeccCCHH-------------------------------------HHHHHHHHHHHcC
Confidence 677888999999999876644444444311 1224455677899
Q ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc------------cH-hHHhcCCCcEEEc
Q 015201 249 AHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG------------FL-ERMKGTGVDVIGL 315 (411)
Q Consensus 249 ~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~------------~l-~~~~e~g~d~l~~ 315 (411)
++.+.+.-.+.+ +..++.+.+..+.. +.|+..|-.|.-. .+ ..+.=.|+|.+++
T Consensus 113 ~~~vmi~~~~~G-----------~~al~~l~~~~~~~--~l~ih~Hra~~g~~~r~~~~Gis~~v~~kL~RLaGaD~ih~ 179 (291)
T d2d69a1 113 GQYVMIDIVVAG-----------WSALQYMREVTEDL--GLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHT 179 (291)
T ss_dssp CCEEEEEHHHHC-----------HHHHHHHHHHHHHH--TCEEEEECTTTHHHHSCTTSEECHHHHHHHHHHHTCSEEEC
T ss_pred CCEEEecccccc-----------hHHHHHHHHhhccc--cceeeecccccceeccCCCCcccHHHHHHHHHHcCCCeeec
Confidence 999843222222 23333344434333 5677777776521 01 2222348888765
Q ss_pred CC-----CCCHHHHHHHhCCCeeEEccCCcCcc--C--CCHHHHHHHHHHHHHHhCCCCeEEeCCCCC--CCCCcHHHHH
Q 015201 316 DW-----TVDMADGRKRLGNDISVQGNVDPACL--F--SPLPALTDEIQRVVKCAGSRGHILNLGHGV--LVGTPEEAVA 384 (411)
Q Consensus 316 d~-----~~di~~~~~~~g~~~~l~G~vd~~~L--~--gt~eeV~~ev~~~i~~~~~~gfIls~gc~i--~~~tp~Eni~ 384 (411)
.. ..+.++..+....=..-+|++.+.+. - -++..+ .++++..|. -+|+..|.++ -|+-+-+..+
T Consensus 180 ~~~~Gk~~~~~~e~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~v----p~~~~~~G~-D~il~~GGgi~gHP~G~~aGa~ 254 (291)
T d2d69a1 180 GTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLM----PELIRLFGK-DLVIQAGGGVMGHPDGPRAGAK 254 (291)
T ss_dssp CCCCSSSCCCHHHHHHHHHHHHSCCTTCCCCEEEEESSCCGGGH----HHHHHHHCS-CCEEECHHHHHTCTTCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhccccccCCCceeccccccchhhh----HHHHHHcCC-ceEEEcCccccCCCCchHHHHH
Confidence 31 22444433321100112455555431 1 134333 344455554 7788877776 4667788888
Q ss_pred HHHHHHHhc
Q 015201 385 HFFEVGKSM 393 (411)
Q Consensus 385 a~~~a~~~y 393 (411)
||.++..-.
T Consensus 255 A~RqA~ea~ 263 (291)
T d2d69a1 255 ALRDAIDAA 263 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766533
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=86.00 E-value=3.2 Score=34.50 Aligned_cols=140 Identities=13% Similarity=0.184 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCEEE-EecCCC-CCCCHHHHHHHHH--------------HHHHHHHHHHHhhCCCCCEEEEecCCcc--
Q 015201 239 DYIIYQVESGAHCIQ-IFDSWG-GQLPPHMWEQWSE--------------PYIREIVSLVRTKCPETPIVLYINGNGG-- 300 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~-i~D~~~-~~iSp~~f~ef~~--------------Py~k~i~~~i~~~~~g~~~~~H~CG~~~-- 300 (411)
+-++.+.++|||.+= ++.+-. -.+|++..++... |-..++.+.+... +. -+++.+|+..
T Consensus 13 ~da~~~~~~gad~iGfI~~~~SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~--~~-~~vQlhg~e~~~ 89 (205)
T d1nsja_ 13 EDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYV--QL-NAVQLHGEEPIE 89 (205)
T ss_dssp HHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHH--TC-SEEEECSCCCHH
T ss_pred HHHHHHHhCCCCEEeEeccCCCCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhc--cc-cchhccchhhHH
Confidence 345667788999873 444433 3899999888754 2234555555554 22 3556667643
Q ss_pred cHhHHhcCCCcEE--EcCCC-----------------------------CCHHHHHHH--hCCCeeEEccCCcCccCCCH
Q 015201 301 FLERMKGTGVDVI--GLDWT-----------------------------VDMADGRKR--LGNDISVQGNVDPACLFSPL 347 (411)
Q Consensus 301 ~l~~~~e~g~d~l--~~d~~-----------------------------~di~~~~~~--~g~~~~l~G~vd~~~L~gt~ 347 (411)
.+..+.....-.. ..+.. .|...+++. ......+.||++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~~~~~~~LAGGl~~------- 162 (205)
T d1nsja_ 90 LCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSGGLNP------- 162 (205)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGGGSSCEEEESSCCT-------
T ss_pred HHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhcccchhcccceeeecCCCH-------
Confidence 2333332211111 11111 122222111 1112445555555
Q ss_pred HHHHHHHHHHHHHhCCCCeEEeCCCCCCCCC-cHHHHHHHHHHHHh
Q 015201 348 PALTDEIQRVVKCAGSRGHILNLGHGVLVGT-PEEAVAHFFEVGKS 392 (411)
Q Consensus 348 eeV~~ev~~~i~~~~~~gfIls~gc~i~~~t-p~Eni~a~~~a~~~ 392 (411)
+.| .+.++..++-|+=+++|=...+|. +++.|++|++++|.
T Consensus 163 ~Nv----~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~vr~ 204 (205)
T d1nsja_ 163 ENV----RSAIDVVRPFAVDVSSGVEAFPGKKDHDSIKMFIKNAKG 204 (205)
T ss_dssp TTH----HHHHHHHCCSEEEESGGGEEETTEECHHHHHHHHHHHHT
T ss_pred HHH----HHHHHHhCCCEEEEcCcccCCCCccCHHHHHHHHHHHhC
Confidence 333 445555566677788887776665 88999999999885
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=85.72 E-value=1.9 Score=37.57 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCccc-H-h--HHhcCCCcEE
Q 015201 239 DYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKC-PETPIVLYINGNGGF-L-E--RMKGTGVDVI 313 (411)
Q Consensus 239 ~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~-~g~~~~~H~CG~~~~-l-~--~~~e~g~d~l 313 (411)
+.++...++|+|.|.+.|..|. +.|+...+ +++.+++.. ++.++-+|.+-+... + . .-.+.|++.+
T Consensus 152 ~~~~~~~~~g~~~I~l~DT~G~-~~P~~v~~--------~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~i 222 (289)
T d1nvma2 152 EQGKLMESYGATCIYMADSGGA-MSMNDIRD--------RMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRV 222 (289)
T ss_dssp HHHHHHHHHTCSEEEEECTTCC-CCHHHHHH--------HHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEE
T ss_pred HHHHhhccccceeeeecchhhc-ccchhHHH--------HHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEe
Confidence 3445667789999999998887 67766544 445555543 456788999887652 3 2 3347899998
Q ss_pred E
Q 015201 314 G 314 (411)
Q Consensus 314 ~ 314 (411)
.
T Consensus 223 d 223 (289)
T d1nvma2 223 D 223 (289)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=84.65 E-value=6.3 Score=34.00 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCCcc---cHhHHhcCCCcE----E-EcCCCCCHHHHHHHh--CCCeeEEccCCcCcc
Q 015201 274 YIREIVSLVRTKCPETPIVLYINGNGG---FLERMKGTGVDV----I-GLDWTVDMADGRKRL--GNDISVQGNVDPACL 343 (411)
Q Consensus 274 y~k~i~~~i~~~~~g~~~~~H~CG~~~---~l~~~~e~g~d~----l-~~d~~~di~~~~~~~--g~~~~l~G~vd~~~L 343 (411)
.+++.++..++. +.|+++|+-.... .++.+.+.|++. + +.+..-+...+++.+ |-.+.+-| +-.. .
T Consensus 139 ~f~~~~~~A~~~--~lPv~iH~r~~~~~~e~~~~l~~~~~~~~~~~~~H~~f~~~~e~~~~~~~~G~~i~~~g-~~~~-~ 214 (291)
T d1bf6a_ 139 VFIAAALAHNQT--GRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDT-IGKN-S 214 (291)
T ss_dssp HHHHHHHHHHHH--CCCEEEECGGGCSHHHHHHHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECC-TTCT-T
T ss_pred HHHHHHHHHHHh--CCCeEEeccchhhhHHHHHHHHHhCCCcccceecccCCCCCHHHHHHHHhcCeeEEecc-cccc-c
Confidence 467777778887 7999999754332 357777776642 2 444556777777664 43333322 2111 1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEeCCCCC
Q 015201 344 FSPLPALTDEIQRVVKCAGSRGHILNLGHGV 374 (411)
Q Consensus 344 ~gt~eeV~~ev~~~i~~~~~~gfIls~gc~i 374 (411)
..+.++..+.++++++......+++++++..
T Consensus 215 ~~~~~~~~~~~~~lv~~~p~drilleTD~p~ 245 (291)
T d1bf6a_ 215 YYPDEKRIAMLHALRDRGLLNRVMLSMDITR 245 (291)
T ss_dssp TSCHHHHHHHHHHHHHTTCGGGEEECCCCCS
T ss_pred CCcHHHhHHHHHHHHHhCCchhEEEecCCCC
Confidence 2445666678888888765579999999753
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.82 E-value=2.6 Score=36.98 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCCcc--cH---hHHhcC
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGG--QLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGNGG--FL---ERMKGT 308 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~--~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~~~--~l---~~~~e~ 308 (411)
.+.++++.+++.|++++++....+. .+|.++.++.+. .+.+..+. .+|++.++.+... .+ ....+.
T Consensus 29 ~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~----~~~~~~~~---~~~vi~g~~~~s~~~~i~~a~~a~~~ 101 (296)
T d1xxxa1 29 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLR----AVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAE 101 (296)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHH----HHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHH----HHHHHhcc---ccceEeccccchhHHHHHHHHHHHHh
Confidence 3445566778999999988777664 699999776443 33344432 4677666555432 23 445568
Q ss_pred CCcEEE
Q 015201 309 GVDVIG 314 (411)
Q Consensus 309 g~d~l~ 314 (411)
|+|.+.
T Consensus 102 Gad~v~ 107 (296)
T d1xxxa1 102 GAHGLL 107 (296)
T ss_dssp TCSEEE
T ss_pred cCCeEE
Confidence 999874
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=83.77 E-value=5.3 Score=32.89 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCEEE-EecC-CCCCCCHHHHHHHH
Q 015201 240 YIIYQVESGAHCIQ-IFDS-WGGQLPPHMWEQWS 271 (411)
Q Consensus 240 ~~~~~~e~G~d~i~-i~D~-~~~~iSp~~f~ef~ 271 (411)
-++.+.++|||.+= ++.+ +--.+||+..++..
T Consensus 13 d~~~~~~~gad~iGfif~~~SpR~vs~~~a~~i~ 46 (200)
T d1v5xa_ 13 DALLAEALGAFALGFVLAPGSRRRIAPEAARAIG 46 (200)
T ss_dssp HHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEcCCCCCCCcCHHHHHHHH
Confidence 35667788999863 4443 22389999877764
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=81.24 E-value=5 Score=34.88 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEe----cCCCC--CCCHHHHHHH----HHHHHHHHHHHHHhhCCCCCEEEEec-------C
Q 015201 235 QAIADYIIYQVESGAHCIQIF----DSWGG--QLPPHMWEQW----SEPYIREIVSLVRTKCPETPIVLYIN-------G 297 (411)
Q Consensus 235 d~~~~~~~~~~e~G~d~i~i~----D~~~~--~iSp~~f~ef----~~Py~k~i~~~i~~~~~g~~~~~H~C-------G 297 (411)
+...+.++++.++|||.|-++ ||.+. .|-....+-+ -....-++++.+++....+|+++-.= |
T Consensus 31 ~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G 110 (267)
T d1qopa_ 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNG 110 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcC
Confidence 444567778889999999877 66552 1111111111 11112223444444433577765442 3
Q ss_pred CcccHhHHhcCCCcEEEc-CC----CCCHHHHHHHhCCCeeEEccCCcCccC--CCHHHHHHHHHHHHHHhCCCCeEEe-
Q 015201 298 NGGFLERMKGTGVDVIGL-DW----TVDMADGRKRLGNDISVQGNVDPACLF--SPLPALTDEIQRVVKCAGSRGHILN- 369 (411)
Q Consensus 298 ~~~~l~~~~e~g~d~l~~-d~----~~di~~~~~~~g~~~~l~G~vd~~~L~--gt~eeV~~ev~~~i~~~~~~gfIls- 369 (411)
...++...++.|++++-+ |- ..++.++.++. |+++..|. .|+++ ..+++.+.. .|||-.
T Consensus 111 ~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~--------~l~~I~lvaPtt~~~---Ri~~i~~~a--~gFiY~v 177 (267)
T d1qopa_ 111 IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRH--------NIAPIFICPPNADDD---LLRQVASYG--RGYTYLL 177 (267)
T ss_dssp HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHT--------TCEEECEECTTCCHH---HHHHHHHHC--CSCEEEE
T ss_pred chHHHHHHHhcCCCceeccchhhhhhHHHHHhhhcc--------CceEEEEecccccHH---HHHHHHhhC--chhhhhh
Confidence 223467777899999854 32 22344444444 34454432 34442 334444444 366632
Q ss_pred CCCCCC--CCCcHHHHHHHHHHHHhcCCCCC
Q 015201 370 LGHGVL--VGTPEEAVAHFFEVGKSMKYDNS 398 (411)
Q Consensus 370 ~gc~i~--~~tp~Eni~a~~~a~~~yg~~~~ 398 (411)
+--++. ....++.+..+++.+|++...|+
T Consensus 178 s~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv 208 (267)
T d1qopa_ 178 SRSGVTGAENRGALPLHHLIEKLKEYHAAPA 208 (267)
T ss_dssp SSSSCCCSSSCC--CCHHHHHHHHHTTCCCE
T ss_pred cccccCCcccccchhHHHHHHHHhhhccCCc
Confidence 112332 22335668888888888765443
|
| >d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.04 E-value=17 Score=31.28 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecCC----c----cc---HhH
Q 015201 236 AIADYIIYQVESGAHCIQIFDSWGGQLPPHMWEQWSEPYIREIVSLVRTKCPETPIVLYINGN----G----GF---LER 304 (411)
Q Consensus 236 ~~~~~~~~~~e~G~d~i~i~D~~~~~iSp~~f~ef~~Py~k~i~~~i~~~~~g~~~~~H~CG~----~----~~---l~~ 304 (411)
...+.++.+.+.|+|.| +++.+ -|.+.- +-+++.+++.+...+++++.|-+ . .. ...
T Consensus 127 ~~~~~~~~l~~~gvD~i-~~ET~---~~~~E~--------~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~ 194 (300)
T d3bofa2 127 NFRETVEIMVEEGVDGI-IFETF---SDILEL--------KAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAIT 194 (300)
T ss_dssp HHHHHHHHHHHTTCSEE-EEEEE---CCHHHH--------HHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCccee-eeeee---ecHHHH--------HHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhh
Confidence 33455667789999987 45544 344332 23345566554345577776633 1 11 234
Q ss_pred HhcCCCcEEEcCCCCC------HHHHHHHhCCC-eeEEccCCc----Cc--cC-CCHHHHHHHHHHHHHHhCCCCeEEeC
Q 015201 305 MKGTGVDVIGLDWTVD------MADGRKRLGND-ISVQGNVDP----AC--LF-SPLPALTDEIQRVVKCAGSRGHILNL 370 (411)
Q Consensus 305 ~~e~g~d~l~~d~~~d------i~~~~~~~g~~-~~l~G~vd~----~~--L~-gt~eeV~~ev~~~i~~~~~~gfIls~ 370 (411)
+.+.+++.+.+.-... +.+..+.+.+. +.+.-|--. .. .. .+|++..+.+++.++.+ --|++-
T Consensus 195 ~~~~~~~~~~inc~~~~~~~~~~~~~~~~~~~~~~~vypN~g~~~~~~~~~~~~~~p~~f~~~~~~w~~~G---a~iIGG 271 (300)
T d3bofa2 195 FDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYELG---VNIFGG 271 (300)
T ss_dssp HHTSSCSEEEEESSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHTT---CSEECC
T ss_pred hcccccchHhhcccccccchhhhhhhhhccccccccccCCCCCCEeCCCcccCCCCHHHHHHHHHHHHHCC---CCEEEE
Confidence 5567888875432221 12222333333 333333211 11 12 58999999999988764 236664
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhcC
Q 015201 371 GHGVLVGTPEEAVAHFFEVGKSMK 394 (411)
Q Consensus 371 gc~i~~~tp~Eni~a~~~a~~~yg 394 (411)
=|+ |.|+.|+++.+.+.++.
T Consensus 272 CCg----t~P~hI~~l~~~l~~~~ 291 (300)
T d3bofa2 272 CCG----TTPEHVKLFRKVLGNRK 291 (300)
T ss_dssp CTT----CCHHHHHHHHHHHCSCC
T ss_pred cCC----CCHHHHHHHHHHHhCCC
Confidence 454 56999999999999885
|