Citrus Sinensis ID: 015208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccHHHHHHHHHHcccccccccccEEEcccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccccccEEEccccccccHHHHHHHHccccccccccccccccccEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccEEccEEccccccccHHHHHHHHHHHccEEEEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccHccccccccHHcccccccHHHHHHHHccccHcccccccccccccEEEEEcccccccEEEEEEEccccccEEEHHHEHHcccEEEEEEEEEccccccEEEEEEEEEccccEcccHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEccEEEcccccccHHHHHHHHHHHcccEEEEEEEEEEEcccccEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGILYDDVVIISqsdkegdpcvitvncpdktglgcdlCRIILFFGLSIvrgdvstdgkwCYIVFWVIGDSQTRWGLLKKRlmgacpscssaSVVLYYRAemqapkpsdvfLLKLscydrkgllYDVTAVLCELELTIEKVKisttpdgkvmdLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITacsqassflpSAIIDMLhldmpvelpsgsltcsnvsvtidnslspghtLVQIVCQDHKGLLYDIMRTLKDYNIqvsygrfsrrqrgnceidlfimqadgkkivdpskqnglssRLWMELLQPLRVTvvsrgpdtellvanpvelsgkgrplvFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDegdglsvprnkIEEGVWKLLMGWE
Flexible Loop (DISEMBL)
MGILYDDVVIisqsdkegdpcVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEkvkisttpdgkvmdlFFVTDTrellhtrkrkedtyeHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSygrfsrrqrgnCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVAnpvelsgkgrpLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLdegdglsvprnkieegVWKLLMGWE
Low Complexity Region (SEG)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered region (IsUnstruct)
**ILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD****NGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW*
Disordered Region (DISOPRED)
****YDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRL***************************VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMV****************************************SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVT*******T*LLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG*******IEEGVWKLLMGW*
Disordered Region (DISEMBL)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered Region (DISPRO)
*GILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPV*******TCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.540	0.233	0.223	4e-05
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.204	0.090	0.333	7e-05
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.369	0.162	0.247	8e-05
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.420	0.184	0.247	0.0003
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.420	0.184	0.247	0.0003
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.114	0.049	0.458	0.0008

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 38/260 (14%)

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPS-DVFLLKLSCYDR 119
           Y  +W+  D+ T+  +   R++       S   V  Y      P P   V  L + C D 
Sbjct: 714 YPSYWLGFDTDTQ--MRHARMVHDSDRYRSPVTVEAY------PIPERGVTELTVLCADH 765

Query: 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHL--K 177
            GL   +   L     +I   +I T  DG  +D F+V D          +     HL  +
Sbjct: 766 PGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLVEQ 825

Query: 178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 237
            + G   I   +E      T+    +  +P  ++                        ID
Sbjct: 826 ALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------------ID 861

Query: 238 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQADG 296
           N+ S  HT++++  +D  GLL+D+   L   ++Q+S    +    G   +D+F +    G
Sbjct: 862 NTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDVFYVRDLLG 919

Query: 297 KKIVDPSKQNGLSSRLWMEL 316
            KI DP +   L   L   L
Sbjct: 920 MKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Gluconobacter oxydans (strain 621H) (taxid: 290633)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 234 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 293
           V IDN+ S  HT++++  +D  GLLYD+ R L +  +Q+S  + S    G   ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904

Query: 294 -ADGKKIVDPSKQNGLSSRLWMELLQP 319
              G K+   +K   +  RL   L  P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 46/198 (23%)

Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
           D  GL   +   +    + I   KI+T  DG  +D+F V                    +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------------Q 774

Query: 178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE---------LPSGSLT 228
           T+ G+A+                +  + L   + D+L  D+P+E         LP  +  
Sbjct: 775 TLEGHAI-------------EKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRH 821

Query: 229 CS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 287
            +    V +DN  S  HT+++I  +D  G LY + R L D  +Q+S  R S    G   +
Sbjct: 822 LTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVV 879

Query: 288 DLFIMQ-ADGKKIVDPSK 304
           D F ++   G KIV  +K
Sbjct: 880 DSFYVKDVFGMKIVHRAK 897

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 41/214 (19%)

Query: 99  AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
           AE Q    S+   + ++  DR+GL  D+   +  L   +   ++ T+  G+ +D+F+V D
Sbjct: 725 AEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784

Query: 159 TR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAII 211
                   E     +R  D  E      G+A+    VE   G+E T  + A +  PS   
Sbjct: 785 VTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRGSEQTRAA-AFAIAPS--- 835

Query: 212 DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ 271
                                 VTIDN  S   T+V+   +D  GLL+ + +TL D  + 
Sbjct: 836 ----------------------VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873

Query: 272 VSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 304
           +          G   +D F +Q  +G K+ D  K
Sbjct: 874 IQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 41/214 (19%)

Query: 99  AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
           AE Q    S+   + ++  DR+GL  D+   +  L   +   ++ T+  G+ +D+F+V D
Sbjct: 725 AEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD 784

Query: 159 TR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVGTEITACSQASSFLPSAII 211
                   E     +R  D  E      G+A+    VE   G+E T  + A +  PS   
Sbjct: 785 VTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRGSEQTRAA-AFAIAPS--- 835

Query: 212 DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ 271
                                 VTIDN  S   T+V+   +D  GLL+ + +TL D  + 
Sbjct: 836 ----------------------VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALS 873

Query: 272 VSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 304
           +          G   +D F +Q  +G K+ D  K
Sbjct: 874 IQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
           ++++ C DR GLL ++TAVL +L L I+  +I+T  + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
356533259	411	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.773	0.0
224117840	412	predicted protein [Populus trichocarpa]	0.997	0.995	0.800	0.0
356572480	412	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.779	0.0
356548347	412	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.766	0.0
225441177	411	PREDICTED: uncharacterized protein LOC10	0.995	0.995	0.779	0.0
224105273	411	predicted protein [Populus trichocarpa]	0.995	0.995	0.786	0.0
224056635	413	predicted protein [Populus trichocarpa]	0.997	0.992	0.784	0.0
255556900	409	amino acid binding protein, putative [Ri	0.990	0.995	0.791	0.0
147817636	465	hypothetical protein VITISV_004035 [Viti	0.995	0.879	0.757	0.0
449440141	411	PREDICTED: uncharacterized protein LOC10	0.997	0.997	0.736	1e-178

>gi|356533259|ref|XP_003535183.1| PREDICTED: uncharacterized protein LOC100789465 [Glycine max]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/411 (77%), Positives = 368/411 (89%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII   +K+GDP ++TVNCPDKTGLGCDLCRI+LFFGL+I+RGDVSTDGKWC
Sbjct: 1   MGILYDDVVIIRPPEKDGDPTLLTVNCPDKTGLGCDLCRIMLFFGLNIIRGDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFWV+G  +TRW LLKKRL+ ACPSCSSAS + YYR+++Q  KPSDVFLL  SC+DRK
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSCSSASGISYYRSDLQPSKPSDVFLLNFSCHDRK 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDGKVMDLFF+TDTRELLHT+KRK++T EHL  I+
Sbjct: 121 GLLHDVTEVLCELELTIKKVKVSTTPDGKVMDLFFITDTRELLHTKKRKDETIEHLTEIM 180

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSL 240
           G+A+IS D+E+VG EITACS+A  FLP+AI D+  L++P     G+L    VS+T+DN L
Sbjct: 181 GDAIISIDIELVGPEITACSKAPPFLPTAITDIFDLELPDLARGGTLRSDYVSITMDNLL 240

Query: 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIV 300
           SP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG CEIDLFIMQADGKKIV
Sbjct: 241 SPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTTKPRGKCEIDLFIMQADGKKIV 300

Query: 301 DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKML 360
           DP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSGKGRPLVF+DITLALKML
Sbjct: 301 DPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLALKML 360

Query: 361 DICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           D CIFSA+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGVWK+LMGWE
Sbjct: 361 DTCIFSAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117840|ref|XP_002317681.1| predicted protein [Populus trichocarpa] gi|222860746|gb|EEE98293.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/412 (80%), Positives = 365/412 (88%), Gaps = 2/412 (0%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII  S+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC
Sbjct: 1   MGILYDDVVIIRHSEKEGDPAVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVF V+G S TRWGLLKKRL+GACPSCSSAS + YY AE+Q P+P DVFLLKL+C+DRK
Sbjct: 61  YIVFSVVGKSTTRWGLLKKRLVGACPSCSSASGISYYTAELQPPRPPDVFLLKLACHDRK 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDTRELLHT KRKEDTY+HL+ ++
Sbjct: 121 GLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTRELLHTNKRKEDTYDHLRAVM 180

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 239
           GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP ELPS   + S   + +DN 
Sbjct: 181 GNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDELPSSLTSTSVSVI-MDNL 239

Query: 240 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 299
           LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R  CEIDLFIMQADGKKI
Sbjct: 240 LSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHRRTCEIDLFIMQADGKKI 299

Query: 300 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 359
           VDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELSGKGRPLVFHDITLAL M
Sbjct: 300 VDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELSGKGRPLVFHDITLALTM 359

Query: 360 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           L+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE VWK+LMGWE
Sbjct: 360 LNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQVWKMLMGWE 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572480|ref|XP_003554396.1| PREDICTED: uncharacterized protein LOC100818216 [Glycine max]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/412 (77%), Positives = 365/412 (88%), Gaps = 1/412 (0%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGIL+DDVVII +++KEG   VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC
Sbjct: 1   MGILHDDVVIIGEAEKEGKATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFWV+G  + RW LLKKRL+ ACPSCSSAS + YYR+E+Q PKP DVFLLK  C+DRK
Sbjct: 61  YIVFWVVGKQRARWSLLKKRLIEACPSCSSASGISYYRSELQPPKPPDVFLLKFCCHDRK 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VL ELEL I KVK+STTPDGKV+DLFF+TDTRELLHT+KR++DT E L  IL
Sbjct: 121 GLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSAIL 180

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 239
           G+ +I+ D+E+VG EI ACSQASSFLPSA+  DM  L++P  + SG+ T  +VS+T+DNS
Sbjct: 181 GDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSIQSGTSTSDSVSITMDNS 240

Query: 240 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 299
           LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRFS + RG CE+DLFIMQADGKKI
Sbjct: 241 LSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIMQADGKKI 300

Query: 300 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 359
           V+PSKQ  LSSRL MELL+PLRVTVVSRGPDTELLVANPVELSGKGRPLVF+DIT ALKM
Sbjct: 301 VNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFYDITHALKM 360

Query: 360 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           L  CIFSAE+GRH++GDREWEVYR+LLDEGDGLSVPRNKIE+GVWK+LMGWE
Sbjct: 361 LGPCIFSAEVGRHVVGDREWEVYRILLDEGDGLSVPRNKIEKGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548347|ref|XP_003542564.1| PREDICTED: uncharacterized protein LOC100816138 [Glycine max]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/412 (76%), Positives = 366/412 (88%), Gaps = 1/412 (0%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVIIS  +K+GDP ++TVNCPDKTGLGCDLCRIILFFGL+I+RGDVSTDGKWC
Sbjct: 1   MGILYDDVVIISPPEKDGDPTLLTVNCPDKTGLGCDLCRIILFFGLNILRGDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFWV+G  +TRW LLKKRL+ ACPS SSAS + YYR+++Q  KPSDVFLL   C+DRK
Sbjct: 61  YIVFWVVGKQRTRWSLLKKRLIEACPSFSSASGISYYRSDLQPSKPSDVFLLNFCCHDRK 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDGKV+DLFF+TDTRELLHT+KRK++T E+L  I+
Sbjct: 121 GLLHDVTEVLCELELTIKKVKVSTTPDGKVIDLFFITDTRELLHTKKRKDETIEYLTEIM 180

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 239
           G+A+IS D+E+VG EITACSQA  FLP+AI  D+  L++P     G+L    VS+T+DN 
Sbjct: 181 GDAIISIDIELVGPEITACSQAPPFLPTAITEDVFDLELPDLARGGTLRSDYVSITMDNL 240

Query: 240 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 299
           LSP HTLVQI+CQDHKGLLYDIMRTLKDYNIQ+SYGRF+ + RG CEIDLFIMQADGKKI
Sbjct: 241 LSPAHTLVQIMCQDHKGLLYDIMRTLKDYNIQISYGRFTAKPRGKCEIDLFIMQADGKKI 300

Query: 300 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 359
           VDP+KQN LSSRL MELL+PLRV +VSRGPDTELLV+NPVELSGKGRPLVF+DITLALKM
Sbjct: 301 VDPNKQNSLSSRLRMELLRPLRVAIVSRGPDTELLVSNPVELSGKGRPLVFYDITLALKM 360

Query: 360 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           LD CIF A+IGRH+IGDREWEVYR+LLDEG+GLSVPRNK+EEGVWK+LMGWE
Sbjct: 361 LDTCIFLAKIGRHLIGDREWEVYRILLDEGEGLSVPRNKVEEGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441177|ref|XP_002268949.1| PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera] gi|297739971|emb|CBI30153.3| unnamed protein product [Vitis vinifera]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/413 (77%), Positives = 359/413 (86%), Gaps = 4/413 (0%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII  S+KEG+P V+TVNCPDKTGLGCDLCRIILFFGLSIVR DVSTDGKWC
Sbjct: 1   MGILYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFW+IG S TRW LL+ RL  ACPSCSSAS   Y+  ++Q PKP DVFLLK  CYDRK
Sbjct: 61  YIVFWIIGKSTTRWSLLQDRLSEACPSCSSASGFSYF--QLQPPKPPDVFLLKFCCYDRK 118

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF+TDTRELLHT+KR+EDT+ HLKT+L
Sbjct: 119 GLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFFITDTRELLHTKKRQEDTHNHLKTVL 178

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCS-NVSVTIDN 238
           G+AMISCD+ MVG+EITACSQ S+ LPSAI  ++       E PSG    S N+SVT+DN
Sbjct: 179 GDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKFEDEPPSGLPQVSGNISVTMDN 238

Query: 239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 298
           SLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++SYGR + + R NCE+DLFIMQADGKK
Sbjct: 239 SLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRLTTKPRRNCEVDLFIMQADGKK 298

Query: 299 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 358
           +VDP KQN L SRL MELL+PLRV VVSRGPDTELLVANPVELSGKGRPLVF DIT ALK
Sbjct: 299 VVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVANPVELSGKGRPLVFFDITHALK 358

Query: 359 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           ML++CIFSAEIGR MI DREWEVYR+LLDEGDGL VPRNKIEEGVWK+LMGWE
Sbjct: 359 MLNVCIFSAEIGRQMIADREWEVYRILLDEGDGLLVPRNKIEEGVWKMLMGWE 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105273|ref|XP_002333837.1| predicted protein [Populus trichocarpa] gi|222838705|gb|EEE77070.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/412 (78%), Positives = 360/412 (87%), Gaps = 3/412 (0%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII  S+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC
Sbjct: 1   MGILYDDVVIIRHSEKEGDPAVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVF V+G S TRWGLLKKRL+GACPSCSSAS + YY AE+Q P+P DVFLLKL+C+DRK
Sbjct: 61  YIVFSVVGKSTTRWGLLKKRLVGACPSCSSASGISYYTAELQPPRPPDVFLLKLACHDRK 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFFVTDT   +   KRKEDTY+HL+ ++
Sbjct: 121 GLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTSSCI-XNKRKEDTYDHLRAVM 179

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNS 239
           GN+MISCD+EMVG EITACS  SSFLP+AI  ++L L MP ELPS   + S   + +DN 
Sbjct: 180 GNSMISCDIEMVGPEITACSAESSFLPTAITENILPLQMPDELPSSLTSTSVSVI-MDNL 238

Query: 240 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKI 299
           LSP HTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRF  + R  CEIDLFIMQADGKKI
Sbjct: 239 LSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHRRTCEIDLFIMQADGKKI 298

Query: 300 VDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKM 359
           VDP+KQ  LSSRL MEL++PLRV VVSRGPDTEL+VANPVELSGKGRPLVFHDITLAL M
Sbjct: 299 VDPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELSGKGRPLVFHDITLALTM 358

Query: 360 LDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           L+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR KIEE VWK+LMGWE
Sbjct: 359 LNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIEEQVWKMLMGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056635|ref|XP_002298947.1| predicted protein [Populus trichocarpa] gi|222846205|gb|EEE83752.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/413 (78%), Positives = 368/413 (89%), Gaps = 3/413 (0%)

Query: 1   MGILYDD-VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKW 59
           MGILYDD VV+I QS+KEGDP VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKW
Sbjct: 1   MGILYDDDVVVIRQSEKEGDPTVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKW 60

Query: 60  CYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDR 119
           CY+VFWV+G S TRWGLLKKRL+ ACPSCSSAS + +YR+E+Q P+P DVFLLKLSC DR
Sbjct: 61  CYLVFWVVGKSTTRWGLLKKRLVEACPSCSSASGLSFYRSELQPPRPPDVFLLKLSCQDR 120

Query: 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 179
           +GLL+DVT+VLCELELTI+KVK+STTPDG+V+DLFF+TD RELLHT KRKEDT +HLK +
Sbjct: 121 RGLLHDVTSVLCELELTIKKVKVSTTPDGRVIDLFFITDNRELLHTNKRKEDTCDHLKAV 180

Query: 180 LGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDN 238
            GN+MISCD+E+VG EITACS  SSFLP+AI  ++L L+MP ELPS   + ++VSV +DN
Sbjct: 181 TGNSMISCDIEIVGPEITACSAESSFLPTAITENILPLEMPDELPSSLTS-TSVSVNMDN 239

Query: 239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 298
           SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQ+SYGRFS      C+IDLF++Q DGKK
Sbjct: 240 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFSMNHGRACDIDLFLVQTDGKK 299

Query: 299 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 358
           IVDP KQ  LSSRL MEL++PLRV  VSRGPDTELLVANPVELSGKGRPLVFHDITLALK
Sbjct: 300 IVDPRKQKALSSRLEMELVRPLRVATVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 359

Query: 359 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           ML+ CIFSAEI R MIGDRE+EVYRVLLDEG+GL+VPR+KIE+ VWK+LMGWE
Sbjct: 360 MLNTCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRSKIEKQVWKMLMGWE 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556900|ref|XP_002519483.1| amino acid binding protein, putative [Ricinus communis] gi|223541346|gb|EEF42897.1| amino acid binding protein, putative [Ricinus communis]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/413 (79%), Positives = 360/413 (87%), Gaps = 6/413 (1%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII QS+KE D  VITVNCPDKTGLGCDLCRIILFFGLSIVRGD STDGKWC
Sbjct: 1   MGILYDDVVIIRQSEKESDLSVITVNCPDKTGLGCDLCRIILFFGLSIVRGDFSTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEM-QAPKPSDVFLLKLSCYDR 119
           YIVFWV G+S TRWGLLKKRL+G CPSCSSAS + YYR E+ Q P+P DVFLLKL C+DR
Sbjct: 61  YIVFWVAGNSSTRWGLLKKRLLGVCPSCSSASGIPYYRDELLQPPRPPDVFLLKLCCHDR 120

Query: 120 KGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 179
           +GLL++VT VLCELELTI KVK+STTPDG+VMDLFFVTDTRELLHT KRKE+TY  LK++
Sbjct: 121 RGLLHNVTEVLCELELTIRKVKVSTTPDGRVMDLFFVTDTRELLHTNKRKEETYGQLKSV 180

Query: 180 LGNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCSNVSVTIDN 238
           +G+ MISCD+EMVG EITACS  SS LP+ I  DMLH     E+P GSLT  +VSVT+DN
Sbjct: 181 IGDGMISCDIEMVGPEITACSLESSSLPTTITEDMLHW----EVPPGSLTSISVSVTMDN 236

Query: 239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 298
           SLSPGHTLVQI CQDHKGLLYDIMRTLKDYNI++SYGRFS +QR NCEIDLFI+QADGKK
Sbjct: 237 SLSPGHTLVQIACQDHKGLLYDIMRTLKDYNIKISYGRFSIKQRRNCEIDLFIVQADGKK 296

Query: 299 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 358
           IVDPSKQ  L SRL MELL+PLRV VVSRGPD ELLVANPVELSG GRPLVFHDITLALK
Sbjct: 297 IVDPSKQGALCSRLEMELLRPLRVAVVSRGPDIELLVANPVELSGNGRPLVFHDITLALK 356

Query: 359 MLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
           ML   IFSAEI R MIGDRE+EVYRVLLDEG+GLSVPR+KI+E VW +LMGW+
Sbjct: 357 MLSTGIFSAEIRRCMIGDREYEVYRVLLDEGEGLSVPRSKIQERVWNMLMGWD 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817636|emb|CAN64495.1| hypothetical protein VITISV_004035 [Vitis vinifera]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/425 (75%), Positives = 359/425 (84%), Gaps = 16/425 (3%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGILYDDVVII  S+KEG+P V+TVNCPDKTGLGCDLCRIILFFGLSIVR DVSTDGKWC
Sbjct: 43  MGILYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKWC 102

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFW+IG S TRW LL+ RL  ACPSCSSAS   Y+  ++Q PKP DVFLLK  CYDRK
Sbjct: 103 YIVFWIIGKSTTRWSLLQDRLSEACPSCSSASGFSYF--QLQPPKPPDVFLLKFCCYDRK 160

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELELTI+KVK+STTPDG+VMDLFF+TDTRELLHT+KR+EDT+ HLKT+L
Sbjct: 161 GLLHDVTEVLCELELTIKKVKVSTTPDGRVMDLFFITDTRELLHTKKRQEDTHNHLKTVL 220

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAII-DMLHLDMPVELPSGSLTCS-NVSVTIDN 238
           G+AMISCD+ MVG+EITACSQ S+ LPSAI  ++       E PSG    S N+SVT+DN
Sbjct: 221 GDAMISCDISMVGSEITACSQTSTLLPSAITREIFGSKFEDEPPSGLPQVSGNISVTMDN 280

Query: 239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK 298
           SLSP HTLVQIVCQDHKGLLYD+MRTLKDYNI++SYGR + + R NCE+DLFIMQADGKK
Sbjct: 281 SLSPAHTLVQIVCQDHKGLLYDMMRTLKDYNIKISYGRLTTKPRRNCEVDLFIMQADGKK 340

Query: 299 IVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALK 358
           +VDP KQN L SRL MELL+PLRV VVSRGPDTELLVANPVELSGKGRPLVF DIT ALK
Sbjct: 341 VVDPYKQNALCSRLQMELLRPLRVAVVSRGPDTELLVANPVELSGKGRPLVFFDITHALK 400

Query: 359 MLDICIFS------------AEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL 406
           ML++CIFS            AEIGR MI DREWEVYR+LLDEGDGL VPRNKIEEGVWK+
Sbjct: 401 MLNVCIFSVLLYAPIIRVRWAEIGRQMIADREWEVYRILLDEGDGLLVPRNKIEEGVWKM 460

Query: 407 LMGWE 411
           LMGWE
Sbjct: 461 LMGWE 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440141|ref|XP_004137843.1| PREDICTED: uncharacterized protein LOC101221909 [Cucumis sativus] gi|449517335|ref|XP_004165701.1| PREDICTED: uncharacterized LOC101221909 [Cucumis sativus]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/410 (73%), Positives = 355/410 (86%)

Query: 1   MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
           MGIL DDVV++  S+K+ +P VITVNCPDKTGLGCDLCRIILFFGL+IVRGDV+TDGKWC
Sbjct: 1   MGILQDDVVLVRPSEKDDEPTVITVNCPDKTGLGCDLCRIILFFGLNIVRGDVTTDGKWC 60

Query: 61  YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRK 120
           YIVFWV G+S TRWGLLK+RLM  CPSCSSAS++ Y+R E Q+ KP D+FLLK  C+DR+
Sbjct: 61  YIVFWVTGNSSTRWGLLKQRLMEVCPSCSSASMLSYFRPEPQSSKPPDMFLLKFCCHDRR 120

Query: 121 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 180
           GLL+DVT VLCELEL IEKVK+STTPDGKVMDLFF+ DTREL+HT KR+ DT EHLK +L
Sbjct: 121 GLLHDVTWVLCELELLIEKVKVSTTPDGKVMDLFFIIDTRELMHTAKRQRDTCEHLKHVL 180

Query: 181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSL 240
           G+A+ISC++EM+ TE+  CSQASS  P  + +   L++  + PS SL   +VSVT+DNSL
Sbjct: 181 GDAVISCEIEMIDTEVMLCSQASSLPPEIVEESCSLELNEKSPSRSLASKDVSVTLDNSL 240

Query: 241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIV 300
           SP HTLVQIVCQDHKGL+YDIMRTLKDYNIQ+SYGRF+++Q+  CEIDLFIMQADGKKI+
Sbjct: 241 SPSHTLVQIVCQDHKGLIYDIMRTLKDYNIQISYGRFNKKQKKICEIDLFIMQADGKKIL 300

Query: 301 DPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKML 360
           D SKQN LS+RL +EL++PLRV V+SRGPDTELLVANP ELSGKGRPLVF+DITLALK+L
Sbjct: 301 DQSKQNALSTRLQIELIRPLRVAVLSRGPDTELLVANPTELSGKGRPLVFYDITLALKLL 360

Query: 361 DICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW 410
           DI IF AEI RH+IGDREWEVYRV+LDEG G SVPR+KIEEGV K+LMGW
Sbjct: 361 DIGIFLAEIRRHLIGDREWEVYRVMLDEGAGSSVPRSKIEEGVRKMLMGW 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.990	0.992	0.685	1.3e-148
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.980	0.980	0.540	9.4e-114
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.676	0.613	0.228	5.2e-09
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.722	0.673	0.231	6.4e-07
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.812	0.734	0.234	1.1e-06
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.698	0.662	0.216	2.2e-06
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.890	0.802	0.230	2.4e-06
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.773	0.708	0.221	3.1e-06
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.430	0.371	0.232	0.00027

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1451 (515.8 bits), Expect = 1.3e-148, P = 1.3e-148
 Identities = 284/414 (68%), Positives = 331/414 (79%)

Query:     1 MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
             MGIL DDVVIISQS+KEGDP VIT+NCPDKTGLGCDLCRI+LFFGL+IVRGDVSTDGKWC
Sbjct:     1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWC 60

Query:    61 YIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV--LYYR-AEMQAPKPSDVFLLKLSCY 117
             Y+VFWVIG   TRW LLK RL+ A PS S A  +   Y   +E Q PK  D+FLLKL+C 
Sbjct:    61 YLVFWVIGKPNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACS 120

Query:   118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
             DR GLLYDVT VL +LE+ IEKVKISTTPDGKVMDLFFVTDTRELL T KR+ + YE+L+
Sbjct:   121 DRTGLLYDVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTRELLGTVKRRNEVYEYLR 180

Query:   178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 237
               +G++MIS D+E+VG EITACS +SS   +    +   D+  E  SG  T SNVS+ +D
Sbjct:   181 DAIGDSMISYDIELVGPEITACSTSSSVAET----LFSSDVSGEHSSGLHTSSNVSIAVD 236

Query:   238 NSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGK 297
             NSLS  HTL+ I CQDHKGLLYDIMRT KD+NIQ+SYGRF+ +   NCEIDLFI+Q+DG+
Sbjct:   237 NSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNIQISYGRFTIKLGKNCEIDLFIVQSDGR 296

Query:   298 KIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLAL 357
             KI+D SK N L +RL  EL QPLRV +++RGPDTELLV NPVELSGKGRP VFHDI LAL
Sbjct:   297 KILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQVFHDIALAL 356

Query:   358 KMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 411
             K +D CIFSAEIGRH+ GDREWEVY+VL++E D L +PR+KIEE VWK LMGWE
Sbjct:   357 KKIDTCIFSAEIGRHVTGDREWEVYKVLINEEDSLPIPRSKIEEEVWKTLMGWE 410

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 226/418 (54%), Positives = 289/418 (69%)

Query:     1 MGILYDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWC 60
             MGIL DD V+I      GDP V+TVNCPD++GLG  LCRIIL FGLSI R D STDG+WC
Sbjct:     1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWC 60

Query:    61 YIVFWVIGD-SQTR--WGLLKKRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCY 117
             YIVFWV  D S  +  W  LK RL+ ACPSC  +    Y+  +    KP  ++LLK  C 
Sbjct:    61 YIVFWVTPDISSPKIDWDSLKNRLLSACPSCLGS---FYFCLQSNVSKPPSLYLLKFFCR 117

Query:   118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
             DRKGLL+DVT VL ELE TI++VK+ TTPDG+V+D+FF+TD  +LLHT++R+  T +HL 
Sbjct:   118 DRKGLLHDVTKVLTELEFTIQRVKVMTTPDGRVLDMFFITDAMDLLHTKQRQTKTCDHLT 177

Query:   178 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSV-TI 236
              +LG   +SC++E+ G E+ +  + SS  P A  ++   D   ++ SGS   SN +V T+
Sbjct:   178 AVLGEHGVSCELELAGPELESVQRFSSLPPLAADELFGPD-GFDI-SGS--SSNKAVLTV 233

Query:   237 DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG 296
             DN LSP HTL+QI C D KGL YDI+RT KD ++ ++YGRFS + +G   ++LF+   DG
Sbjct:   234 DNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVHIAYGRFSSKVKGYRNLELFVRGTDG 293

Query:   297 KKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLA 356
              KI+DP  Q    +RL  E++ PLRV +V+RGPDTELLVANPVELSGKGRP VF+D+TLA
Sbjct:   294 NKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLA 353

Query:   357 LKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 410
             LK L ICIFSAEIGRH   DR+WEVYR LLDE     +     RN++ + V K LMGW
Sbjct:   354 LKSLGICIFSAEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 69/302 (22%), Positives = 136/302 (45%)

Query:     8 VVIISQSDKEGDPC-VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWV 66
             V I + S KE   C ++ V+  +K G+  ++ +++    L+I +  +S+DG W   VF V
Sbjct:    25 VSIDNTSCKE---CTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHV 81

Query:    67 I---GDSQTRWGLLK--KRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKG 121
                 G+  T    +   ++++G     +SAS   +    +      D   +++   DR G
Sbjct:    82 TDQQGNKVTDSKTIDYIEKVLGP-KGHASASQNTWPGKRVGVHSLGDHTSIEIIARDRPG 140

Query:   122 LLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI-- 179
             LL +V+AVL +L + +   + + T + ++  + +V D     +   R  D  E L ++  
Sbjct:   141 LLSEVSAVLADLNINVVAAE-AWTHNRRIACVLYVND-----NATSRAVDDPERLSSMEE 194

Query:   180 -LGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPS---GSLTCS-NVSV 234
              L N +  C+ +      T+ S  S+ +   +  M   D   E  +    S +C     +
Sbjct:   195 QLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDDSASCGFEPKI 254

Query:   235 TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA 294
             T+++    G++++ + C+D   L++DI+ TL D    V +   S     +   + FI   
Sbjct:   255 TVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISS-SGSHASQEYFIRHK 313

Query:   295 DG 296
             DG
Sbjct:   314 DG 315

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 75/324 (23%), Positives = 141/324 (43%)

Query:    22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRL 81
             ++ V+   + G+  +  +I+    LSI +  +S+DG W   VF V   +  +  L  + +
Sbjct:    34 IVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVTDLNGNK--LNDQSV 91

Query:    82 MGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVK 141
             +       S   V YY   ++    + +  L+L+  DR GLL ++ AVL +L   +   K
Sbjct:    92 LRYIEQ--SIETV-YYGENIEV---NGLTALELTGTDRIGLLSEMFAVLSDLNCDVVDAK 145

Query:   142 ISTTPDGKVMDLFFVTDT---RELLHTRKRKEDTYEHLKTILGNAMISCDVEMVG-TEIT 197
             +  T +G+V  + ++ D      +L +  R       LK +L       DV     T +T
Sbjct:   146 L-WTHNGRVASVIYLKDCISGAPILDSH-RISKIEGRLKNVLNG---DNDVNSAAKTCVT 200

Query:   198 ACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSN-VSVTIDNSLSPGHTLVQIVCQDHKG 256
               S     +   +  ++  D   E  S     S  V VT+ N    G+++V + C+D   
Sbjct:   201 VDSMMH--IERRLHQLMFEDRDYERRSKKHERSPMVVVTVQNWAERGYSVVNVHCRDRTK 258

Query:   257 LLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNG----LSSRL 312
             LL+D++ TL D    V +   +  +     ++ +I   DG  I   +++      L + +
Sbjct:   259 LLFDVVCTLTDMEYAVFHATINTAE-DQAHLEFYIRHKDGSPISSEAERQRVIQCLEAAV 317

Query:   313 WMELLQPLRVTVVSRGPDTELLVA 336
                 L+ +R+ +  R PD + L+A
Sbjct:   318 ERRALEGVRLEL--RHPDKQGLLA 339

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 86/367 (23%), Positives = 157/367 (42%)

Query:     8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVI 67
             VVI + S K+    VI V+  ++ G+  ++ +I+    L+I +  +S+DG W   VF V 
Sbjct:    27 VVIDNDSCKKAT--VIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84

Query:    68 ---GDSQTRWGLLK--KRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGL 122
                G+  T   +L   ++ +G   +C S S+    R+    P  +D  +++L+  DR GL
Sbjct:    85 DQDGNKVTDEVVLDYIQKSLGP-EACFSTSM----RSVGVIPS-TDSTVIELTGCDRPGL 138

Query:   123 LYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 182
             L +++AVL  L+ ++   +I  T + +   +  VTD  +L        +    +K +L N
Sbjct:   139 LSELSAVLTHLKCSVLNAEI-WTHNTRAAAVMQVTD--DLTGCGISDPERLSRIKNLLRN 195

Query:   183 AMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE--LPSGSLTCSNV----SVTI 236
              +   +        T  S         +  M+  D   E  L     +  +      V +
Sbjct:   196 VLKGSNTPREAK--TVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVCV 253

Query:   237 DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG 296
             DN L   +++V + C+D   LL+D + TL D    V +G          + + ++   DG
Sbjct:   254 DNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQ-EYYVRHIDG 312

Query:   297 KKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVEL-SGKGRPLVFHDITL 355
                  P K      R+ ++ L+      VS G   EL   + V L S   R  +F + +L
Sbjct:   313 S----PVKSEAEKQRV-IQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTR--IFRENSL 365

Query:   356 ALKMLDI 362
              +   ++
Sbjct:   366 TVTRAEV 372

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 65/300 (21%), Positives = 127/300 (42%)

Query:    10 IISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGD 69
             ++  ++   D  VI V+  +K G   ++ +++    L I +  +S+DG W   VF VI  
Sbjct:    18 VVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVIDQ 77

Query:    70 SQTRWGLLKKRLMGACPSC--SSASVVLYYRAEMQAPKPSDVFL-LKLSCYDRKGLLYDV 126
                +  +   +++        S+A   +          P+D +  ++L+  DR GLL +V
Sbjct:    78 DGNK--IRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIELAGTDRPGLLSEV 135

Query:   127 TAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 186
             +AVL +L   +   +I  T + +   +  VTD     H+          +K +L N + +
Sbjct:   136 SAVLTDLHCNVVNAEI-WTHNTRAAAVIHVTDNST--HSAITDPIRLSTIKELLCNVVRT 192

Query:   187 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE-LPSGSLTCSNVSVTIDNSLSPGHT 245
                      + +CS         +  ++  D   E +     + S  SVT+ N +   +T
Sbjct:   193 NSGSRAAKTVFSCSDTHR--ERRLHQIMFDDRDYEGVKRARTSASRPSVTLMN-IEKDYT 249

Query:   246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ 305
             +V +  +D   L++D++ TL D    V +G  S       + + +I   DG  I   ++Q
Sbjct:   250 VVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQ-EFYIRHVDGLPINSEAEQ 308

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 94/408 (23%), Positives = 169/408 (41%)

Query:     8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVI 67
             VVI ++  K  D  VI V+  +K G+  ++ +++    L+I +  +S+DG W   VF V 
Sbjct:    27 VVIDNEVCK--DVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84

Query:    68 ---GDSQTRWGLLK--KRLMGACPS-CSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKG 121
                G+  T   +L+  ++ +G   S C S S+    R+ +   +  D  +++L+  DR G
Sbjct:    85 DQDGNKVTDEIVLEYIRKSLGPDESSCFSPSM----RSTIGVKQSVDYTVVELTGTDRPG 140

Query:   122 LLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 181
             LL ++ AVL +L+  +   +I  T   K   +  VTD  E   +     +    ++ +LG
Sbjct:   141 LLSELCAVLMDLQCNVVNAEI-WTHRAKAAAVLQVTD--EETCSAITDPERLSKIRKLLG 197

Query:   182 NAMI--SCDVEMVGTEITACSQAS-SFLPSAIIDMLHLDMPVELPSGSLT----CSNV-- 232
               +   S        + T  S  + +     +  ++  D   +    ++     C  V  
Sbjct:   198 YVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVIP 257

Query:   233 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 292
              V + N     +++V I C+D   LL+D + TL D N  VS+      +      + +I 
Sbjct:   258 DVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDA-EGPQAYQEYYIR 316

Query:   293 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHD 352
               DG     P K      R+ ++ L+      VS G   EL  ++ V L          D
Sbjct:   317 HTDGS----PVKSEAERQRV-IKCLKAAIQRRVSEGLKLELCTSDRVGL--------LSD 363

Query:   353 ITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIE 400
             +T   +   + +  AE+     GD+    + V   +  G  V    IE
Sbjct:   364 VTRIFRENSLTVTRAEVKTK--GDKALNTFYVR--DASGYQVDTKTIE 407

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 78/352 (22%), Positives = 148/352 (42%)

Query:    22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVI---GDSQTRWGLLK 78
             V+ ++     G+  +  +++    L I +  +S+DGKW   VF V    GD  T   L+ 
Sbjct:    34 VVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHVSDLNGDKLTDENLI- 92

Query:    79 KRLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE 138
              R +       S     Y + E      + +  L+L+  DR GLL +V AVL +LE  + 
Sbjct:    93 -RYIE-----KSIETSHYCKTEGY----TGLTALELTGTDRVGLLSEVFAVLADLECDVV 142

Query:   139 KVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITA 198
             + K + T +G++  + +V D            D  + ++  L N + + D     T    
Sbjct:   143 EAK-AWTHNGRIASMIYVKDGNSGTPI-DGDSDRVQRVEGQLRNLLKADDGYQNDTRTCV 200

Query:   199 CSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLL 258
                 ++ +   +   + +D   E     +  S + V++ N    G+++V + C+D   LL
Sbjct:   201 SYGGNTHMERRLHQRMFMDRDYE-KKFDIEKSPI-VSVQNLPKRGYSVVNLQCKDRMKLL 258

Query:   259 YDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIV-DPSKQNGLSSRLWMELL 317
             +D++ TL D    V +    R       ++ ++  +DG  +  +P +Q          L+
Sbjct:   259 FDVVCTLTDMAYIVFHAAI-RTVGETAFLEFYVRHSDGHPVSSEPERQR---------LI 308

Query:   318 QPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEI 369
             Q L+  +  R      +    +EL    RP +  ++T  L+   + I  AEI
Sbjct:   309 QCLQAAIERR-----TVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEI 355

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
 Identities = 44/189 (23%), Positives = 85/189 (44%)

Query:    15 DKEGDP-C-VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWV---IGD 69
             D + DP C +I V+  +K G+  D+ +++    L I +  +S+DG+W   VF V   +G+
Sbjct:    29 DNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDVFHVTDQLGN 88

Query:    70 SQTRWGLLKKRLMGACPSCSSA---SVVLYYRAEMQAPKPS-DVFLLKLSCYDRKGLLYD 125
               T   L+       C S +      +    + E+Q    S +    +++  +R GLL +
Sbjct:    89 KLTDRSLILYIQQAICSSRTGGITKEMQSNLKREVQQRHVSTEHTAFEITGINRPGLLSE 148

Query:   126 VTAVLCELELTIEKVKISTTPDGKVMDLFFVTD--TRELLHTRKRKEDTYEHLKTILGNA 183
             ++AVL ++   +    ++ T   +   + ++ D      +    RK    +HL T++   
Sbjct:   149 ISAVLSDIGCHVTAA-VAWTHHERAAMVIYLEDGFNGGPIIDPIRKAQVKDHLDTVMEAH 207

Query:   184 MISCDVEMV 192
              I  DV  V
Sbjct:   208 HIVGDVSHV 216

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0431 hypothetical protein (413 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	1e-38
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	6e-38
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	9e-38
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	1e-34
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-15
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-12
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-11
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	4e-09
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-09
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	9e-09
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-08
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	5e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	1e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	1e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	6e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	7e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	4e-04
pfam01842	66	pfam01842, ACT, ACT domain	0.001
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.002
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	0.002

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  132 bits (335), Expect = 1e-38
 Identities = 55/76 (72%), Positives = 70/76 (92%)

Query: 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 169
           FLLKL C DRKGLL+DVT VL ELELTIE+VK+STTPDG+V+DLFF+TD RELLHT+KR+
Sbjct: 1   FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRR 60

Query: 170 EDTYEHLKTILGNAMI 185
           E+TY++L+ +LG++MI
Sbjct: 61  EETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (331), Expect = 6e-38
 Identities = 54/77 (70%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL---S 393
           NPVELSGKGRP VF+DITLALK L ICIFSAEIGRH  GDR+WEVYRVLL E D L    
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 394 VPRNKIEEGVWKLLMGW 410
             R+K+ + V K LMGW
Sbjct: 61  RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (330), Expect = 9e-38
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 304
           TL+QI C D KGLLYDI+RT KD NIQ+SYGRFS + +G  E+DLFI+Q+DGKKI+DP K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 305 QNGLSSRLWMELLQP 319
           Q  L +RL  E++ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  122 bits (307), Expect = 1e-34
 Identities = 50/68 (73%), Positives = 55/68 (80%), Gaps = 3/68 (4%)

Query: 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS---QTRWGLLK 78
          VIT+NCPDKTGLGCDLCRIIL FGL+I RGD STDG+WCYIVFWV+      + RW LLK
Sbjct: 2  VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLK 61

Query: 79 KRLMGACP 86
           RLM ACP
Sbjct: 62 NRLMSACP 69

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 169
            +L+L+  DR GLL DVT VL EL L I   KI+T  + +  D+F+VTD        +R+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTDADGQPLDPERQ 59

Query: 170 EDTYEHLKTILGNAM 184
               E L+  LG A+
Sbjct: 60  ----EALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE 170
           ++++   DR GLL D+T VL +L L I   +ISTT + + +D+F+VTD+       +R  
Sbjct: 2   VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIA 60

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIG-----DSQTRWGL 76
          V+ V  PD+ GL  D+ R++   GL+I    +ST G+    VF+V           R   
Sbjct: 2  VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIAR 61

Query: 77 LKKRLMGAC 85
          L++ L  A 
Sbjct: 62 LEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 51/207 (24%), Positives = 75/207 (36%), Gaps = 49/207 (23%)

Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
           D  GL   +          I   +I TT DG+ +D F++ D         R ED    L 
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG------RDEDEPRRLA 794

Query: 178 TILGNAMISCDV---EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSV 234
            +     I  D    E+   E  A          A          V  P          V
Sbjct: 795 RL--AKAIE-DALSGEVRLPEALAKRTKPKKRARAFH--------VP-PR---------V 833

Query: 235 TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS------YGRFSRRQRGNCE-- 286
           TIDN  S   T++++  +D  GLLYD+ R L D N+ ++      YG          E  
Sbjct: 834 TIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYG----------ERA 883

Query: 287 IDLFIMQ-ADGKKIVDPSKQNGLSSRL 312
           +D+F +    G KI + ++Q  +   L
Sbjct: 884 VDVFYVTDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 304
           T+V++   D  GLL DI R L D  + +   R S    G   +D+F +     + +DP +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPLDPER 58

Query: 305 QNGLSSRLWMEL 316
              L   L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 116 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH 175
             DR  L   V A L    L+I   +I TT DG  +D F V +         R+      
Sbjct: 691 APDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE 750

Query: 176 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 235
           L   L +             I    +     P                          VT
Sbjct: 751 LIEALLSGKAQPPRR---RRIPRKLRHFPIPPR-------------------------VT 782

Query: 236 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-A 294
           I  + S   T++++   D  GLL  +     D  + +   + +    G    D+FI+  A
Sbjct: 783 ILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDA 840

Query: 295 DGKKIVDPSKQNGLSSRL 312
           DG+ +    +Q+ L   L
Sbjct: 841 DGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR-N 397
           VE+    RP +  DIT  L  L + I  A I     G+R  +V+ V   +G  L   R  
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIA 60

Query: 398 KIEEGVWKLL 407
           ++EE +   L
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 32/201 (15%)

Query: 108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD-TRELLHTR 166
           +VF+      D+ GL   V   L  L L++   +++TT DG  +D F V D         
Sbjct: 670 EVFIY---APDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAE 726

Query: 167 KRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGS 226
           +  ++  + L  +L       D            Q  +  P                   
Sbjct: 727 RVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPR------------------ 768

Query: 227 LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE 286
                  VTI N+ S   T++++   D  GLL  + RTL++  + +   + +    G   
Sbjct: 769 -------VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKA 819

Query: 287 IDLFIMQ-ADGKKIVDPSKQN 306
            D+F +    G K+ D  +Q 
Sbjct: 820 EDVFYVTDLFGLKLTDEEEQR 840

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK 169
           L +S  DR GLL  V +VL E  + I  ++  T+ DG   D+F V D    L      
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEA 58

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 21/167 (12%)

Query: 23  ITVNCPDKTGLGCDLCRIILFFGLSIVRG--DVSTDGKW--CYIVFWVIGDS--QTRWGL 76
           + V  PD+  L   +C  +   GLSIV      + DG     +IV    G    + R   
Sbjct: 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAA 746

Query: 77  LKKRLMGACPSCSSASVVLYYRAEMQAP----KPS---------DVFLLKLSCYDRKGLL 123
           L+  L+ A  S   A      R   +       P          D  +L++   DR GLL
Sbjct: 747 LRGELIEALLS-GKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLL 805

Query: 124 YDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKE 170
             +  V  +L L++   KI TT   +V D+F VTD        + ++
Sbjct: 806 AALAGVFADLGLSLHSAKI-TTFGERVEDVFIVTDADGQALNAELRQ 851

Length = 867

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
           DR GL   +   L +L L I   +I TT DG  +D F V D
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 158
           L+L   DR GLL DVT V  E  LT+ + +IST      +++F+VTD
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTD 49

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 177
           DR GLL  V+ V  EL L +   KI+T  + K  D F +T+ +      + ++     L 
Sbjct: 792 DRAGLLAQVSQVFSELNLNLLNAKITTIGE-KAEDFFILTNQQGQALDEEERKALKSRLL 850

Query: 178 TILG 181
           + L 
Sbjct: 851 SNLS 854

Length = 854

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 107 SDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVTD 158
           S+ F +++++  DR GLLYD+T  L +L L I    I+T   G + +D+F+VTD
Sbjct: 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTD 891

Length = 931

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 162
           +++   DR GLL D+T V+ E ++ I  V   T  DG   + L   V D   L
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHL 53

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKR 168
           L++   DR GLL +V   L +  + IE +  ST+ D   ++ +  V D  +L    + 
Sbjct: 3   LEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 98  RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 157
           R +++  +    ++L +S  DR GLLY +  VL E  +++   KI+T  + +V D F + 
Sbjct: 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGE-RVEDTFLID 833

Query: 158 DTR 160
            + 
Sbjct: 834 GSG 836

Length = 856

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFF---VTDTREL 162
           L++   DR GLL D+T V+   +  I  V    + D  +  +     V D   L
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAE-SKDNGIATINLTLEVKDLEHL 59

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 44/210 (20%), Positives = 73/210 (34%), Gaps = 36/210 (17%)

Query: 118 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT--RELLHTRKRKEDTYEH 175
           D+        A + +L L I   +I T+     +D + V D     +     R E   E 
Sbjct: 713 DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREG 772

Query: 176 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 235
           L   L N                        P     ++   +P +L   +       VT
Sbjct: 773 LTEALRN------------------------PDDYPTIIQRRVPRQLKHFAFP---TQVT 805

Query: 236 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR-QRGNCEIDLFIMQA 294
           I N      T+++I+  D  GLL  I R   ++++ +   + +   +R   E   FI  A
Sbjct: 806 ISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGER--VEDVFFITDA 863

Query: 295 DGKKIVDPSKQNGLSSRLWMELLQPLRVTV 324
           D + + DP     L SRL   + + L    
Sbjct: 864 DNQPLSDP----QLCSRLQDAICEQLDARN 889

Length = 895

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTD 158
           L+K+    + G+L +   VL +L+L I K  IS+  DG   MD+F VTD
Sbjct: 3   LVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGWFMDVFHVTD 49

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.95
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
PRK04374	869	PII uridylyl-transferase; Provisional	99.94
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.94
PRK03059	856	PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.93
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK05092	931	PII uridylyl-transferase; Provisional	99.93
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.93
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.9
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.9
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.88
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.83
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.82
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.77
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.76
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.75
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.7
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.68
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.66
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.64
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.64
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.62
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.61
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.48
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.48
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.45
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.43
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.4
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.38
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.35
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.35
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.29
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.21
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.14
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.1
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	99.08
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.03
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.97
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.8
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.71
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.66
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.6
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.57
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.53
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.51
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.34
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.3
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.29
COG4747	142	ACT domain-containing protein [General function pr	98.27
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.27
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.25
PRK00194	90	hypothetical protein; Validated	98.16
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.13
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.08
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.05
PRK00194	90	hypothetical protein; Validated	98.05
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	98.02
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.0
PRK07431	587	aspartate kinase; Provisional	97.95
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.9
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.89
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.82
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.78
COG3830	90	ACT domain-containing protein [Signal transduction	97.77
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.75
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.73
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.7
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.7
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.66
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.62
COG3830	90	ACT domain-containing protein [Signal transduction	97.6
COG4747	142	ACT domain-containing protein [General function pr	97.56
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.53
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.45
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.41
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.35
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.25
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.24
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.15
PRK07431	587	aspartate kinase; Provisional	97.15
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.07
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.07
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.05
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.97
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.95
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.94
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.92
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.92
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.89
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.88
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.88
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.86
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.85
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.8
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.78
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.75
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.74
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.73
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.68
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.67
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.66
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.66
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.66
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.66
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.64
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.63
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	96.62
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.62
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.61
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.6
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.58
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.56
PRK08577	136	hypothetical protein; Provisional	96.54
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.54
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.53
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.52
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.49
PRK08577	136	hypothetical protein; Provisional	96.48
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.46
PRK04435	147	hypothetical protein; Provisional	96.42
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.39
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.37
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.35
PRK04435	147	hypothetical protein; Provisional	96.33
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.25
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.24
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.13
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.12
PRK06635	404	aspartate kinase; Reviewed	96.04
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.04
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.99
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.96
cd02116	60	ACT ACT domains are commonly involved in specifica	95.95
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.92
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.83
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	95.8
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.8
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	95.77
PRK11899	279	prephenate dehydratase; Provisional	95.66
cd02116	60	ACT ACT domains are commonly involved in specifica	95.54
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.54
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.52
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	95.41
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.4
PRK07334	403	threonine dehydratase; Provisional	95.35
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	95.19
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.01
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.95
PRK08210	403	aspartate kinase I; Reviewed	94.67
PRK07334	403	threonine dehydratase; Provisional	94.66
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.6
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.46
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.43
PRK06291	465	aspartate kinase; Provisional	94.36
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.22
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.18
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.07
COG1707	218	ACT domain-containing protein [General function pr	94.05
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	93.91
PRK06635	404	aspartate kinase; Reviewed	93.9
PLN02551	521	aspartokinase	93.88
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.7
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.37
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.35
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.98
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.75
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.72
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.67
PRK11899	279	prephenate dehydratase; Provisional	92.67
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.53
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.51
PRK09034	454	aspartate kinase; Reviewed	92.47
PRK08210	403	aspartate kinase I; Reviewed	92.46
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.29
PRK09181	475	aspartate kinase; Validated	92.28
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.1
PRK09084	448	aspartate kinase III; Validated	92.07
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.06
PRK11898	283	prephenate dehydratase; Provisional	92.04
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.81
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.74
PRK06291	465	aspartate kinase; Provisional	91.71
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.58
PRK06382	406	threonine dehydratase; Provisional	91.55
COG1707	218	ACT domain-containing protein [General function pr	91.34
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	91.21
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	91.02
PRK09034	454	aspartate kinase; Reviewed	91.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	90.58
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	89.95
PRK08818	370	prephenate dehydrogenase; Provisional	89.64
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	89.38
PLN02551	521	aspartokinase	89.36
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.12
PRK09181	475	aspartate kinase; Validated	89.11
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	88.98
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	88.65
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	88.44
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	87.97
PRK06382	406	threonine dehydratase; Provisional	87.95
PRK12483	521	threonine dehydratase; Reviewed	87.93
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	87.64
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	87.54
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.26
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.23
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.96
PLN02317	382	arogenate dehydratase	86.24
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	85.59
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	85.43
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.24
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	85.12
COG2150	167	Predicted regulator of amino acid metabolism, cont	84.74
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	84.7
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	84.52
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	84.48
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	84.28
PRK08198	404	threonine dehydratase; Provisional	84.27
PRK06545	359	prephenate dehydrogenase; Validated	84.03
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	83.9
PRK06545	359	prephenate dehydrogenase; Validated	83.61
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	83.24
PRK06349	426	homoserine dehydrogenase; Provisional	82.53
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	82.18
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	82.16
PLN02550	591	threonine dehydratase	81.99
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	80.96
PRK08841	392	aspartate kinase; Validated	80.22
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	80.14
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.13

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=3.5e-29  Score=274.18  Aligned_cols=184  Identities=20%  Similarity=0.277  Sum_probs=159.2

Q ss_pred             ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      +.+..+.+++.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++++++++|++.|.++|
T Consensus       669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL  748 (854)
T PRK01759        669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKAL  748 (854)
T ss_pred             EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45677789999999999999999999999999999999999999899999999999999888777788999999999999


Q ss_pred             cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208          181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  260 (411)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~  260 (411)
                      .+..          ..         ..++ .+.         +...++.+||+|.|||+.++.+|+|+|.++||||||++
T Consensus       749 ~~~~----------~~---------~~~~-~~~---------~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~  799 (854)
T PRK01759        749 NTNK----------LK---------KLNL-EEN---------HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ  799 (854)
T ss_pred             cCCC----------Cc---------chhc-ccc---------ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence            8632          00         0000 000         01123567999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208          261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  316 (411)
Q Consensus       261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  316 (411)
                      |+++|.++|++|+.|+|+  |.|+++.|+|||+ .+|.+++++++ ++|+++|.++|
T Consensus       800 I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        800 VSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999  8999999999996 78999997655 99999998776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=6.4e-29  Score=273.03  Aligned_cols=187  Identities=21%  Similarity=0.226  Sum_probs=161.4

Q ss_pred             ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      +.+..+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++++++++|++.|.++|
T Consensus       693 i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        693 LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            45667778999999999999999999999999999999999999889999999999999987767789999999999999


Q ss_pred             cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208          181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  260 (411)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~  260 (411)
                      .+.. .        ..        +..++..           .+..++.+||+|.|+|+.++.+|+|+|.++||||||++
T Consensus       773 ~~~~-~--------~~--------~~~~~~~-----------~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~  824 (884)
T PRK05007        773 TQSS-P--------QP--------PKPRRLP-----------AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLAR  824 (884)
T ss_pred             cCCC-C--------Cc--------ccccccc-----------cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence            7642 0        00        0011100           01123567999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      |+++|.++|++|++|+|+  |.|+++.|+|||+ .+|.+++ +++++.|+++|.+++..
T Consensus       825 I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        825 VGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            999999999999999999  8999999999996 7899999 67889999999988854

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.95  E-value=4.8e-26  Score=250.76  Aligned_cols=187  Identities=22%  Similarity=0.274  Sum_probs=156.5

Q ss_pred             cCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHH
Q 015208          102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL  180 (411)
Q Consensus       102 ~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L  180 (411)
                      .+..+.+.|+|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|||++.+|.++ +++++++|++.|.++|
T Consensus       661 ~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L  740 (850)
T TIGR01693       661 DGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL  740 (850)
T ss_pred             eccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence            344557999999999999999999999999999999999999879999999999999988754 4567999999999999


Q ss_pred             cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208          181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  260 (411)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~  260 (411)
                      .+.. +    . .+....    ....++               +..++.+||+|.|+|+.++.+|+|+|.|.||||||++
T Consensus       741 ~~~~-~----~-~~~~~~----~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~  795 (850)
T TIGR01693       741 AGLA-K----D-PDTISA----RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLAR  795 (850)
T ss_pred             cCCC-c----c-cccccc----ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHH
Confidence            8632 0    0 000000    000011               1123567999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208          261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  316 (411)
Q Consensus       261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  316 (411)
                      |+++|+++|++|.+|+|+  |.|+++.|+||++ ..|.++++ ++++.|+++|..++
T Consensus       796 i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       796 VGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999  8999999999997 67999997 78899999998775

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.5e-25  Score=246.61  Aligned_cols=184  Identities=21%  Similarity=0.268  Sum_probs=157.3

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC--CHhHHHHHHHHHHHHHcccc
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM  184 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~--~~~~~~~l~~~L~~~L~~~~  184 (411)
                      .+.+.|.|+++||||||+++|++|+.+|+||++|+|+|+.+|+++|+|+|.+++|.++  +++++++|++.|.++|.+..
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~  781 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD  781 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999999999999999999999999999988753  45799999999999998642


Q ss_pred             cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHH
Q 015208          185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT  264 (411)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~  264 (411)
                           ..  +..         ..++...           ....+.+++.|.|+++.+.++|+|+|.+.||||||++|+++
T Consensus       782 -----~~--~~~---------~~~~~~~-----------~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~  834 (895)
T PRK00275        782 -----DY--PTI---------IQRRVPR-----------QLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI  834 (895)
T ss_pred             -----cc--chh---------hhhhhhh-----------hccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence                 00  000         1111100           01134678999999999999999999999999999999999


Q ss_pred             HHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          265 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       265 l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      |+++|+||.+|+|+  |.|+++.|+|||+ .+|.++++++++++|+++|..+|..+
T Consensus       835 L~~~~l~I~~AkI~--T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        835 FLEFDLSLQNAKIA--TLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             HHHCCCEEEEeEEE--ecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999  6799999999996 78999998888999999999988653

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.1e-25  Score=245.35  Aligned_cols=173  Identities=19%  Similarity=0.272  Sum_probs=148.4

Q ss_pred             cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHHHH
Q 015208            7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLLKK   79 (411)
Q Consensus         7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l~~   79 (411)
                      +.|. ..+++..++++|+|+++||||||++||++|+.+|+||.+|+|+|  ||. ++|+|+|.+++|.     +|+.+++
T Consensus       689 p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~-alD~F~V~d~~g~~~~~~~~~~I~~  766 (884)
T PRK05007        689 PLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGM-AMDTFIVLEPDGSPLSQDRHQVIRK  766 (884)
T ss_pred             CeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCe-EEEEEEEECCCCCCCCHHHHHHHHH
Confidence            3444 55788889999999999999999999999999999999999977  555 9999999998863     5777889


Q ss_pred             HHHhhCCCCCCcc---------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208           80 RLMGACPSCSSAS---------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD  147 (411)
Q Consensus        80 ~L~~~l~~~~~~~---------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~  147 (411)
                      .|++++.+.....         .+++..+   .++|+.+..+|+|+|.++|||||||+|+++|+++|++|++|+|.| .+
T Consensus       767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T-~g  845 (884)
T PRK05007        767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT-IG  845 (884)
T ss_pred             HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-cC
Confidence            9999886653211         1112222   278899999999999999999999999999999999999999999 99


Q ss_pred             CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208          148 GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      +++.|+|||++.+|.++++++++.|++.|.++|..
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            99999999999998888888889999999999864

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=4.2e-25  Score=241.56  Aligned_cols=182  Identities=18%  Similarity=0.247  Sum_probs=153.6

Q ss_pred             CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208          104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~  183 (411)
                      ....+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+..  +++++++++.|.++|.+.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~  762 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD  762 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence            445588999999999999999999999999999999999999999999999999998764  466888999999999874


Q ss_pred             ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208          184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR  263 (411)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~  263 (411)
                      . .    .  +...     ..+.++               +..++.+||+|.|+|+.+.++|+|+|.+.||||||++|++
T Consensus       763 ~-~----~--~~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~  815 (869)
T PRK04374        763 L-Q----K--VRPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH  815 (869)
T ss_pred             C-C----c--cccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence            2 0    0  0000     000111               1124578999999999999999999999999999999999


Q ss_pred             HHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      +|+++|++|.+|+|+  |.|+++.|+|||+ .+|.+++++++ ++|+++|.+++.
T Consensus       816 ~l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        816 VLRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999999  7899999999996 78888887655 999999988874

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=3.1e-25  Score=243.25  Aligned_cols=172  Identities=21%  Similarity=0.210  Sum_probs=145.5

Q ss_pred             cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCc-----cHHHHHHH
Q 015208            7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQT-----RWGLLKKR   80 (411)
Q Consensus         7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~-----~~~~l~~~   80 (411)
                      +.|. ..+++..++++|+|+++||||||++||++|+.+|+||++|+|+| .+++++|+|+|.+++|.     +|+.+++.
T Consensus       665 ~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~  743 (854)
T PRK01759        665 LLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQA  743 (854)
T ss_pred             CEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence            3444 55888889999999999999999999999999999999999976 45559999999998873     57788889


Q ss_pred             HHhhCCCCCCcce--------eeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCe
Q 015208           81 LMGACPSCSSASV--------VLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK  149 (411)
Q Consensus        81 L~~~l~~~~~~~~--------~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~  149 (411)
                      |++++.+......        +++..+   .++|+.+..+|+|+|.++|||||||+|+++|+++|++|++|+|.| .+++
T Consensus       744 L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-~ger  822 (854)
T PRK01759        744 LTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-IGEK  822 (854)
T ss_pred             HHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-cCce
Confidence            9999876542211        112222   278999999999999999999999999999999999999999998 8999


Q ss_pred             EEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          150 VMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       150 ~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      +.|+|||++.+|.+++++..++|+++|.++|
T Consensus       823 v~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        823 AEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             EEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            9999999999888766555589999998876

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=9.9e-25  Score=239.06  Aligned_cols=183  Identities=19%  Similarity=0.211  Sum_probs=153.4

Q ss_pred             CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208          104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~  183 (411)
                      ....+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.|...+++++++|++.|.++|.++
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~  752 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ  752 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence            44568899999999999999999999999999999999999999999999999998877556679999999999999874


Q ss_pred             ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208          184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR  263 (411)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~  263 (411)
                      . .    .   ..        ...++..           .+...+..++.|.|+++.+.++|+|+|.++||||||++|++
T Consensus       753 ~-~----~---~~--------~~~~~~~-----------~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~  805 (856)
T PRK03059        753 A-P----L---PE--------PSKGRLS-----------RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR  805 (856)
T ss_pred             C-C----c---ch--------hhccccc-----------ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence            2 0    0   00        0111100           01123567899999999999999999999999999999999


Q ss_pred             HHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      +|+.+|+||.+|+|+  |.|+++.|+|||+  +.++.+++++++|+++|..++.
T Consensus       806 ~L~~~~l~I~~AkI~--T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        806 VLAEHRVSVHTAKIN--TLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHCCCeEEEEEEe--ecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999  6799999999994  4446677889999999987763

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=9.4e-25  Score=238.85  Aligned_cols=174  Identities=21%  Similarity=0.195  Sum_probs=145.6

Q ss_pred             CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc---cHHHHHHH
Q 015208            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT---RWGLLKKR   80 (411)
Q Consensus         6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~---~~~~l~~~   80 (411)
                      +++|+.....+..+.++|+|+++|+||||++||++|+.+|+||++|+|+|  ||. ++|+|+|.++.|.   +|+++++.
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~i~~~  754 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDA-IFDVFEVLPQDTYADGDPQRLAAA  754 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCE-EEEEEEEeCCCCCChHHHHHHHHH
Confidence            45566655577779999999999999999999999999999999999976  666 9999999998873   68889999


Q ss_pred             HHhhCCCCCCcc---e-------eeeeccc---ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208           81 LMGACPSCSSAS---V-------VLYYRAE---MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD  147 (411)
Q Consensus        81 L~~~l~~~~~~~---~-------~~~~~~~---~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~  147 (411)
                      |++++.+.....   .       +++..++   +.+..+.++|+|+|++.||||||++|+++|+.+|+||++|+|+| .+
T Consensus       755 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T-~g  833 (869)
T PRK04374        755 LRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT-FG  833 (869)
T ss_pred             HHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe-cC
Confidence            999987743210   0       1222222   56778889999999999999999999999999999999999999 59


Q ss_pred             CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          148 GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                      ++++|+|||++.+|.+.++++.+.|++.|.++|.
T Consensus       834 ~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        834 ERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            9999999999998876554444999999998885

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=9.1e-25  Score=240.34  Aligned_cols=175  Identities=18%  Similarity=0.234  Sum_probs=145.2

Q ss_pred             CcEEEEEecCCC---CCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-------c
Q 015208            6 DDVVIISQSDKE---GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-------R   73 (411)
Q Consensus         6 ~~~v~~~~~~~~---~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-------~   73 (411)
                      +++|+ ..+.+.   .++++|+|+++||||||+++|++|+.+|+||++|+|+|  ||. ++|+|+|.+++|.       +
T Consensus       688 ~~~v~-~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~-alD~F~V~d~~g~~~~~~~~r  765 (895)
T PRK00275        688 GPLVL-IKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQF-TLDTYIVLDDDGEPIGDNPAR  765 (895)
T ss_pred             CCeEE-EEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCe-EEEEEEEeCCCCCCccchHHH
Confidence            44555 435454   58999999999999999999999999999999999965  665 9999999998763       5


Q ss_pred             HHHHHHHHHhhCCCCCCcc----------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEE
Q 015208           74 WGLLKKRLMGACPSCSSAS----------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV  140 (411)
Q Consensus        74 ~~~l~~~L~~~l~~~~~~~----------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A  140 (411)
                      |+.+++.|+++|.+.....          ..++..+   .+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|
T Consensus       766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A  845 (895)
T PRK00275        766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA  845 (895)
T ss_pred             HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence            7788899999987654210          0122212   25677888999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHHccc
Q 015208          141 KISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       141 ~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L~~~  183 (411)
                      +|+|. +++++|+|||++.+|.++ +++++++|++.|.++|.+.
T Consensus       846 kI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        846 KIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99995 999999999999988764 5578999999999999763

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.93  E-value=2.1e-24  Score=239.26  Aligned_cols=190  Identities=23%  Similarity=0.360  Sum_probs=159.8

Q ss_pred             cCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHH
Q 015208          102 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       102 ~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L  180 (411)
                      .+....+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.+ .+++++++|++.|.+++
T Consensus       725 ~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        725 RPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             EecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34556689999999999999999999999999999999999998999999999999988765 46789999999999999


Q ss_pred             cccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHH
Q 015208          181 GNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYD  260 (411)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~  260 (411)
                      .+.. .    +  +..         ..++. +      +  ..+..++.++|+|.|+|+.+..+|+|+|.+.||||||++
T Consensus       805 ~~~~-~----~--~~~---------~~~r~-~------~--~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~  859 (931)
T PRK05092        805 SGEV-R----L--PEA---------LAKRT-K------P--KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYD  859 (931)
T ss_pred             cCCC-C----C--ccc---------ccccc-C------c--cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence            7632 0    0  000         00100 0      0  001123567899999999999999999999999999999


Q ss_pred             HHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          261 IMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       261 i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      |+++|+++|+||.+|+|.  |.|+++.|+|||+ .+|.++.+++.+++|+++|.++|..
T Consensus       860 I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        860 LTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             HHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999  7899999999996 7899999988899999999999865

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.5e-24  Score=226.46  Aligned_cols=183  Identities=23%  Similarity=0.227  Sum_probs=154.3

Q ss_pred             CCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208          104 PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       104 ~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~  183 (411)
                      ....+.+.|.|+++|+|.||+.+++.+...|+||++|+|+|+.+|+++|+|+|.+++|.++++.+...++..|.+++.+.
T Consensus       679 r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~  758 (867)
T COG2844         679 RPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSG  758 (867)
T ss_pred             cccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcC
Confidence            34447899999999999999999999999999999999999999999999999999998888888888888888888653


Q ss_pred             ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHH
Q 015208          184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMR  263 (411)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~  263 (411)
                      .      . .+.          ..++.           ..+..++.++|+|.|.|..++.+|+|+|.+.||||||+++++
T Consensus       759 ~------~-~~~----------~~~r~-----------~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~  810 (867)
T COG2844         759 K------A-QPP----------RRRRI-----------PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAG  810 (867)
T ss_pred             C------C-CCc----------ccccc-----------CcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHH
Confidence            2      0 000          01111           112235788999999999999999999999999999999999


Q ss_pred             HHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          264 TLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       264 ~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      +|++++++|.+|+|+  |.|++++|+|||+ ..|.+++ ++..+.+.+.|.+++.
T Consensus       811 v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         811 VFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             HHHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence            999999999999999  8999999999997 7899996 4566677777666553

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=6e-24  Score=232.93  Aligned_cols=171  Identities=22%  Similarity=0.346  Sum_probs=141.6

Q ss_pred             CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHHH
Q 015208            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLLK   78 (411)
Q Consensus         6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l~   78 (411)
                      +++|+ ..+.+..+.++|+|+++||||||+++|++|+.+|+||++|+|+|  ||. ++|+|+|.++.|.     +|++++
T Consensus       665 ~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~-~ld~f~V~~~~~~~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGY-ALDTFQVLDPEEDVHYRDIINLVE  742 (856)
T ss_pred             CCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCe-EEEEEEEeCCCCCCChHHHHHHHH
Confidence            34455 55777789999999999999999999999999999999999965  776 9999999998763     588899


Q ss_pred             HHHHhhCCCCCCcc----------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC
Q 015208           79 KRLMGACPSCSSAS----------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT  145 (411)
Q Consensus        79 ~~L~~~l~~~~~~~----------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~  145 (411)
                      +.|++++.+.....          .+++..+   .+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~  822 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL  822 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence            99999987643210          0112222   2456777899999999999999999999999999999999999994


Q ss_pred             CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          146 PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       146 ~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                       +|+++|+|||++..  ..+++++++|++.|.++|+
T Consensus       823 -~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        823 -GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA  855 (856)
T ss_pred             -CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence             99999999995443  3467889999999998774

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=8.1e-24  Score=229.93  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=136.4

Q ss_pred             cEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc--cHHHHHHHHHhh
Q 015208            7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT--RWGLLKKRLMGA   84 (411)
Q Consensus         7 ~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~--~~~~l~~~L~~~   84 (411)
                      ++++...+.+ .+.++|+|+++||||||++||++|+.+||||++|+|+|.+++++|+|+|.++.|.  .|+++++.|+++
T Consensus       587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~  665 (774)
T PRK03381        587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRA  665 (774)
T ss_pred             CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence            3444444666 7999999999999999999999999999999999998844449999999998763  588899999999


Q ss_pred             CCCCCCc--c--ee----------eeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC
Q 015208           85 CPSCSSA--S--VV----------LYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD  147 (411)
Q Consensus        85 l~~~~~~--~--~~----------~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~  147 (411)
                      +.+....  .  .+          .+..+   .+.+..+.++|+|+|+++||||||++|+++|+++|+||++|+|.| .+
T Consensus       666 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T-~g  744 (774)
T PRK03381        666 LDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVAT-LG  744 (774)
T ss_pred             HcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEee-cC
Confidence            8775321  0  00          11111   245677778999999999999999999999999999999999999 59


Q ss_pred             CeEEEEEEEEcCCCcCCCHhHHHHHHHHH
Q 015208          148 GKVMDLFFVTDTRELLHTRKRKEDTYEHL  176 (411)
Q Consensus       148 ~~~~d~F~V~~~~~~~~~~~~~~~l~~~L  176 (411)
                      ++++|+|||++.+|.+++++ ++.|++.|
T Consensus       745 ~~a~D~F~V~d~~g~~~~~~-~~~l~~~L  772 (774)
T PRK03381        745 ADVVDVFYVTGAAGGPLADA-RAAVEQAV  772 (774)
T ss_pred             CeEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence            99999999999998766554 66776665

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=228.67  Aligned_cols=175  Identities=19%  Similarity=0.273  Sum_probs=144.4

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccccc
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS  186 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~  186 (411)
                      .+.+.|.|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.++.|...   .++++++.|.++|.+.. .
T Consensus       597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~  671 (774)
T PRK03381        597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-D  671 (774)
T ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-c
Confidence            68899999999999999999999999999999999999 9999999999999887643   35889999999998732 0


Q ss_pred             cccccccceeeeccCcCCC-ChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHH
Q 015208          187 CDVEMVGTEITACSQASSF-LPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL  265 (411)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~-~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l  265 (411)
                      ..     ......   ... .++               +...+..++.|.++|+.+.++|+|+|.++||||||++|+++|
T Consensus       672 ~~-----~~~~~~---~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L  728 (774)
T PRK03381        672 VL-----ARLAAR---EAAAAAV---------------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARAL  728 (774)
T ss_pred             hh-----hhhhcc---ccccccc---------------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHH
Confidence            00     000000   000 001               112356789999999999999999999999999999999999


Q ss_pred             HhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHH
Q 015208          266 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       266 ~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~  313 (411)
                      +++|+||.+|+|.  |.|+++.|+|||+ .+|.+++++  ++.|+++|.
T Consensus       729 ~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        729 ERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            9999999999999  7899999999996 789999975  788888774

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.90  E-value=2.3e-22  Score=223.08  Aligned_cols=176  Identities=23%  Similarity=0.323  Sum_probs=146.9

Q ss_pred             CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc------cHHHH
Q 015208            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT------RWGLL   77 (411)
Q Consensus         6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~------~~~~l   77 (411)
                      .++++...+++..+.++|+|+++||||||++||++|+.+||||++|+|+|  +|+ ++|+|+|.+++|.      +|+.|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~-alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGR-ALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCe-EEEEEEEECCCCCCCCCHHHHHHH
Confidence            44666556777789999999999999999999999999999999999977  565 9999999988762      47788


Q ss_pred             HHHHHhhCCCCCCc------c------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208           78 KKRLMGACPSCSSA------S------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI  142 (411)
Q Consensus        78 ~~~L~~~l~~~~~~------~------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I  142 (411)
                      ++.|++++.+....      .      .+++..+   .+++..+.++|+|+|+++||||||++|+++|+++|+||.+|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            88898888654221      0      0112111   2667788899999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHHccc
Q 015208          143 STTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       143 ~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L~~~  183 (411)
                      .| .++++.|+|+|++.+|.+ .++++++.|++.|.++|.+.
T Consensus       877 ~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        877 AT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             EE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            98 689999999999988765 46678999999999999764

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.90  E-value=3e-22  Score=220.81  Aligned_cols=173  Identities=21%  Similarity=0.276  Sum_probs=144.3

Q ss_pred             CcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-EcCcEEEEEEEEEcCCCc------cHHHHH
Q 015208            6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS-TDGKWCYIVFWVIGDSQT------RWGLLK   78 (411)
Q Consensus         6 ~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~-tdg~~~~d~f~V~~~~g~------~~~~l~   78 (411)
                      ++.|++. +....++++|+|+++||||||++||++|+.+|+||.+|+|+ |.|.+++|+|+|++++|.      +++.++
T Consensus       655 ~~~v~~~-~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALID-GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEe-ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            4455555 44447899999999999999999999999999999999998 544459999999998863      477788


Q ss_pred             HHHHhhCCCCCCcc------------eeeeecc---cccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 015208           79 KRLMGACPSCSSAS------------VVLYYRA---EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS  143 (411)
Q Consensus        79 ~~L~~~l~~~~~~~------------~~~~~~~---~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~  143 (411)
                      +.|.+++.+.....            .+++..+   .++|..+.++|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            88988887643210            0112222   27789999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          144 TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       144 T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      | .++++.|+|||++..|.+.++++++.|++.|.++|
T Consensus       814 t-~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 T-FGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             e-cCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            9 78999999999999887776688899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.7e-22  Score=205.95  Aligned_cols=175  Identities=25%  Similarity=0.318  Sum_probs=139.2

Q ss_pred             CCcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-----cHHHH
Q 015208            5 YDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-----RWGLL   77 (411)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-----~~~~l   77 (411)
                      ++.+|... ..+..++++|+|+++|+|.||+.+|+.+...|+||++|+|+|  ||+ ++|+|.|+++.|.     +...+
T Consensus       670 ~~~Lv~~~-~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~-alDtfiv~~~~g~~~~~dr~~~~  747 (867)
T COG2844         670 GKPLVLIS-VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGY-ALDTFIVLEPDGFPVEEDRRAAL  747 (867)
T ss_pred             cCcceeee-ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCc-eeeeEEEecCCCCccchhHHHHH
Confidence            34455544 445558999999999999999999999999999999999976  888 9999999999883     23344


Q ss_pred             HHHHHhhCCCC-CCc--------ceeeeeccc---ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC
Q 015208           78 KKRLMGACPSC-SSA--------SVVLYYRAE---MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT  145 (411)
Q Consensus        78 ~~~L~~~l~~~-~~~--------~~~~~~~~~---~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~  145 (411)
                      +..|.+++.+. ..+        ..++|..++   +.+..+...|+++|.+.||||||++++++|++++++|++|+|.| 
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT-  826 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT-  826 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence            45555554322 110        123454432   67888889999999999999999999999999999999999988 


Q ss_pred             CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208          146 PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       146 ~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      .|+++.|+|||++..|..++++..+.+.+.|.+++..
T Consensus       827 ~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~  863 (867)
T COG2844         827 FGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP  863 (867)
T ss_pred             ccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999998877777666776766666653

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.83  E-value=1.7e-19  Score=163.86  Aligned_cols=158  Identities=10%  Similarity=0.068  Sum_probs=118.2

Q ss_pred             CCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC-C
Q 015208          241 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-P  319 (411)
Q Consensus       241 ~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-~  319 (411)
                      ...+++|++.|+|||||++.++++|+++||||.+++++  .+|+.|.-++.+.  |.+    ...+.|+..|...-++ .
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~~----~~~~~le~~L~~l~~~~~   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GSW----NAITLIESTLPLKGAELD   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CCh----hHHHHHHHHHHhhhhhcC
Confidence            45789999999999999999999999999999999998  6899998777774  333    4678898887544322 4


Q ss_pred             ceEEEeccCC--CccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc-c--ccCcceeeEEEEEEEcCCCCCC
Q 015208          320 LRVTVVSRGP--DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR-H--MIGDREWEVYRVLLDEGDGLSV  394 (411)
Q Consensus       320 ~~~~i~~~~~--~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~-~--~~g~~~~~~~~f~v~~~~g~~~  394 (411)
                      +.+.+.....  ......++.++|.|.||||||++||++|+++|+||.++++.. +  ..|...+ .-.|.+.-|.|..+
T Consensus        77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf-~~~~~v~lP~~~~~  155 (190)
T PRK11589         77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQL-HIQITAHSPASQDA  155 (190)
T ss_pred             eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccE-EEEEEEEcCCCCCH
Confidence            4444432111  122233689999999999999999999999999999999993 1  1333333 33477777888776


Q ss_pred             C--hhhHHHHHHHHhc
Q 015208          395 P--RNKIEEGVWKLLM  408 (411)
Q Consensus       395 ~--~~~~~~~~~~~~~  408 (411)
                      +  +. .++.++++|+
T Consensus       156 ~~L~~-~l~~l~~eL~  170 (190)
T PRK11589        156 ANIEQ-AFKALCTELN  170 (190)
T ss_pred             HHHHH-HHHHHHHHhC
Confidence            6  44 5777777764

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=9.6e-20  Score=140.08  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=70.5

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      ||+|+|.|+||||||++|+++|+++|++|++|+|+  |.|+++.|+|||+ .+|.|+.+++++++|+++|.+++.++
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999  8999999999996 89999999999999999999998763

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.77  E-value=4.1e-18  Score=131.05  Aligned_cols=75  Identities=63%  Similarity=1.006  Sum_probs=70.4

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      |+|+|.++|||||||+|+++|+++|++|++|+|++.|.|+++.|+||++.+|++++++++++.|+++|.+++.+|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999966799999999999878999999999999999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.76  E-value=3.2e-18  Score=148.88  Aligned_cols=144  Identities=17%  Similarity=0.082  Sum_probs=112.9

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  321 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  321 (411)
                      .+|++|++.|.||||++..++++..++||||.++|++  ..|+.+.  |++...|.|    +...+|+..| +.+.++..
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a--~i~lisgs~----dav~~le~~l-~~l~~~~~   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFA--GIMLISGSW----DAVTLLEATL-PLLGAELD   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--Hhhccee--EEEEEeeCH----HHHHHHHHHh-hcccccCC
Confidence            4679999999999999999999999999999999999  7899888  455556666    6789999997 55666555


Q ss_pred             EEEe--ccCCCc--cccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc-cccCcceeeEEEEEEEcCCCCCCCh
Q 015208          322 VTVV--SRGPDT--ELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR-HMIGDREWEVYRVLLDEGDGLSVPR  396 (411)
Q Consensus       322 ~~i~--~~~~~~--~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~-~~~g~~~~~~~~f~v~~~~g~~~~~  396 (411)
                      +.+.  ..++.+  ....++.++|.++||||||.++|++|.++|+||+++++.+ +..|..+   --|++.-..+.|++.
T Consensus        74 L~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~---~lfha~it~~lPa~~  150 (176)
T COG2716          74 LLVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSA---PLFHAQITARLPANL  150 (176)
T ss_pred             eEEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCc---cceehhhhccCCCcC
Confidence            5433  333332  2467889999999999999999999999999999999995 3444333   226666666667764


Q ss_pred             h
Q 015208          397 N  397 (411)
Q Consensus       397 ~  397 (411)
                      +
T Consensus       151 ~  151 (176)
T COG2716         151 S  151 (176)
T ss_pred             c
Confidence            4

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=8.1e-18  Score=128.48  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=64.6

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHH
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~  313 (411)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|+  |.|+++.|+|||+ .+|+|+.|++.+++|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999  8999999999996 78999999999999999874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.4e-16  Score=122.58  Aligned_cols=73  Identities=16%  Similarity=0.358  Sum_probs=67.6

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcC-CCHhHHHHHHHHHHHHHcc
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL-HTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~-~~~~~~~~l~~~L~~~L~~  182 (411)
                      +|+|+|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||++.+|.+ .+++++++|++.|.+++..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999 899999999999998865 5678899999999998853

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=3.4e-16  Score=119.56  Aligned_cols=68  Identities=29%  Similarity=0.352  Sum_probs=62.0

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHH
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLK  177 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~  177 (411)
                      +|+|+|.++||||||++|+++|+++|++|++|+|.| .|+++.|+|||++.+|.++ ++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999 8999999999999987654 6788888887764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.66  E-value=9.4e-16  Score=119.29  Aligned_cols=72  Identities=72%  Similarity=1.152  Sum_probs=66.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      .++|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+...++++++++++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence            689999999999999999999999999999999889999999999999877755678999999999999865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.64  E-value=1.9e-15  Score=116.71  Aligned_cols=71  Identities=31%  Similarity=0.339  Sum_probs=64.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCC-CHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~-~~~~~~~l~~~L~~~L  180 (411)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++++... ++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999999999999977899999999999887654 5788999999988764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.64  E-value=5.4e-15  Score=134.42  Aligned_cols=158  Identities=14%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             CCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           16 KEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        16 ~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      ++..++.|+++|+|||||.++++++|+++||||++++++.-|..|.-++.|+.+. .....++..|...... ... ...
T Consensus         4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-~~~~~le~~L~~l~~~-~~L-~i~   80 (190)
T PRK11589          4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-NAITLIESTLPLKGAE-LDL-LIV   80 (190)
T ss_pred             CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-hHHHHHHHHHHhhhhh-cCe-EEE
Confidence            3557899999999999999999999999999999999988555588889886432 1333444444332211 111 111


Q ss_pred             eeccccc-CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC---CC--eEEEEEEEEcCCCcCCCHhHH
Q 015208           96 YYRAEMQ-APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP---DG--KVMDLFFVTDTRELLHTRKRK  169 (411)
Q Consensus        96 ~~~~~~~-~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~---~~--~~~d~F~V~~~~~~~~~~~~~  169 (411)
                      ..+.... .......+.++|++.||||++++++++|+++|+||.+.+-.|..   .+  .+.-.|.|.-+.+.     ..
T Consensus        81 v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-----~~  155 (190)
T PRK11589         81 MKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-----DA  155 (190)
T ss_pred             EEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-----CH
Confidence            2111110 11122258999999999999999999999999999888877632   12  44555666555432     25


Q ss_pred             HHHHHHHHHHHc
Q 015208          170 EDTYEHLKTILG  181 (411)
Q Consensus       170 ~~l~~~L~~~L~  181 (411)
                      +.|+++|.+.-+
T Consensus       156 ~~L~~~l~~l~~  167 (190)
T PRK11589        156 ANIEQAFKALCT  167 (190)
T ss_pred             HHHHHHHHHHHH
Confidence            667777776443

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=3.6e-15  Score=114.75  Aligned_cols=71  Identities=25%  Similarity=0.414  Sum_probs=64.3

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE--eCCCCeEEEEEEEEcCCC-cCCCHhHHHHHHHHHHHHHcc
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVMDLFFVTDTRE-LLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~--T~~~~~~~d~F~V~~~~~-~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      |+|+|.++|||||||+|+++|+++|++|++|+|.  | .|+++.|+||| +.+| ++.++++++.|++.|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  8 89999999999 6655 446788999999999998853

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=6.8e-15  Score=113.89  Aligned_cols=71  Identities=25%  Similarity=0.374  Sum_probs=64.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCC-CcC-CCHhHHHHHHHHHHHHHc
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELL-HTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~-~~~-~~~~~~~~l~~~L~~~L~  181 (411)
                      |+|+|+++||||||++|+++|+++||||++|+|+| .+++++|+|+|++++ +.+ .+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t-~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT-HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE-ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999998 599999999999987 654 467889999999999875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.48  E-value=3e-13  Score=104.65  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cC-CCcCCCHHHHHHHHHHHHHHHc
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~-g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      |+|+|.++|||||+++|+++|+++||||.+|++.  |.|+.+.|+|+|. .+ |.++.+++++++|++.|.+++.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  6799999999996 55 8888888899999999987764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.48  E-value=3e-13  Score=102.01  Aligned_cols=64  Identities=25%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      .+|+|+++||||||+++|++|+.+|+||++|+|+|  ||. ++|+|+|.+.+|+..+.+++.+++++
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~-~LDtF~V~d~~~~~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGL-ALDIFVVTGWKRGETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCe-EEEEEEEecCCccchHHHHHHHHHhh
Confidence            58999999999999999999999999999999976  666 89999999999988888888888765

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.45  E-value=7e-13  Score=100.05  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=57.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      +.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+.+|.-     -+.+++.|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            578999999999999999999999999999999999999999999999987641     245566666554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.43  E-value=5.1e-13  Score=116.54  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=114.3

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcc--ee
Q 015208           17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSAS--VV   94 (411)
Q Consensus        17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~--~~   94 (411)
                      +..++.|+++++||||+...+|+..+++||||+++++...|+.|..++.++    ..|+.+ ..|++.|+......  ..
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis----gs~dav-~~le~~l~~l~~~~~L~v   76 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS----GSWDAV-TLLEATLPLLGAELDLLV   76 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe----eCHHHH-HHHHHHhhcccccCCeEE
Confidence            345789999999999999999999999999999999999777788888888    689888 77888886544321  11


Q ss_pred             eeeccccc-CCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHH
Q 015208           95 LYYRAEMQ-APKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDT  172 (411)
Q Consensus        95 ~~~~~~~~-~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l  172 (411)
                      .+.+.... .......+.+.|.+.||||++.++|+.|..+|+||.+....|.. .+.-.-.|...-.-.-+ ..-.+..|
T Consensus        77 ~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lP-a~~~i~~l  155 (176)
T COG2716          77 VMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLP-ANLSISAL  155 (176)
T ss_pred             EEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCC-CcCcHHHH
Confidence            23332222 25566789999999999999999999999999999877765532 22223445554332221 12235667


Q ss_pred             HHHHHH
Q 015208          173 YEHLKT  178 (411)
Q Consensus       173 ~~~L~~  178 (411)
                      +++++.
T Consensus       156 ~~~f~a  161 (176)
T COG2716         156 RDAFEA  161 (176)
T ss_pred             HHHHHH
Confidence            777766

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.40  E-value=3e-12  Score=99.58  Aligned_cols=72  Identities=22%  Similarity=0.368  Sum_probs=63.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      +++|.++|||||+++++++|+++|++|.+|+|.+ |.++++.|+|||. .+|. ..++++++++++.|.+++++.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence            6899999999999999999999999999999995 4899999999996 5445 566788899999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.38  E-value=4.3e-13  Score=100.66  Aligned_cols=72  Identities=74%  Similarity=1.130  Sum_probs=67.1

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCC----hhhHHHHHHHHhccC
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW  410 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~----~~~~~~~~~~~~~~~  410 (411)
                      ++|++|..||.+++|+|-+|+.+|+.||++++.|+..+++.||+|+|.+.+..+. ++    +++|+|+|++.+|||
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999999999999999999986544 65    778999999999998

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.35  E-value=6.8e-12  Score=96.75  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=61.9

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      +.|+|.++||||||++++++|+.+|+||.+|+|.+ +.++.+.|+||+. .+|.++.+++++++|++.|..+
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~   72 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDTFVVLDPDGEPIGERERLARIREALEDA   72 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence            57899999999999999999999999999999984 2468999999996 6788887788889999988664

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.35  E-value=9.6e-12  Score=95.69  Aligned_cols=67  Identities=34%  Similarity=0.421  Sum_probs=58.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  177 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~  177 (411)
                      +.|+|.++||||+|++|+++|+++|+||.+|+++| .+++++|+|+|.++++.+.++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t-~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST-QGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec-CCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            68999999999999999999999999999999998 57799999999998876556677777766553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.29  E-value=3.3e-11  Score=91.66  Aligned_cols=70  Identities=40%  Similarity=0.521  Sum_probs=63.0

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      |.|.|.++|+||+|++|+++|+++|+||.++++.| .+++++|+|++.++++.+.+.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIAT-LGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEe-cCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            57899999999999999999999999999999998 55699999999998877667789999999987753

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.21  E-value=2.9e-10  Score=121.81  Aligned_cols=145  Identities=12%  Similarity=0.086  Sum_probs=114.8

Q ss_pred             eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208          109 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  187 (411)
Q Consensus       109 ~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~  187 (411)
                      ...++|.. +|++|+|.+++++|+.++++|++|++.+  +|.+...|.|....|.++++   ..+++.+...+.+..   
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~---  617 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSEL---  617 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCC---
Confidence            35788888 9999999999999999999999999987  78889999999988887776   566777777776532   


Q ss_pred             ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHh
Q 015208          188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  267 (411)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~  267 (411)
                            +           ...                    ..||.+.+..      ++++|++.||||+|+.++++|. 
T Consensus       618 ------~-----------~~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~-  653 (693)
T PRK00227        618 ------P-----------DPA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP-  653 (693)
T ss_pred             ------C-----------ccc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh-
Confidence                  0           010                    1245566653      7999999999999999999999 


Q ss_pred             CCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          268 YNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       268 ~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                         +|.+|+++  |.|..+.|.||+...       ....+++.++..++.
T Consensus       654 ---~~~~~~~~--~~g~~~~~~~~~~~~-------~~r~~~~~~~~~~~~  691 (693)
T PRK00227        654 ---DLLWITAS--TPGATMIVQAALKPG-------FDRATVERDVTRVLA  691 (693)
T ss_pred             ---hhhhHhhc--CCCcceEEEEEecCc-------ccHHHHHHHHHHHHh
Confidence               67888998  899999999999721       124667777666553

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.14  E-value=5.1e-10  Score=119.94  Aligned_cols=142  Identities=15%  Similarity=0.064  Sum_probs=112.6

Q ss_pred             EEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc--cHHHHHHHHHhhCCCCCCcceeeee
Q 015208           21 CVITVNC-PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT--RWGLLKKRLMGACPSCSSASVVLYY   97 (411)
Q Consensus        21 ~~V~v~~-~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~--~~~~l~~~L~~~l~~~~~~~~~~~~   97 (411)
                      -.|+|.. +|++|++.+++++|+.+|++|.+|++.++|. ++..|.|.+..|.  +...+.+.+...+.+......   .
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  622 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGP-WSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P  622 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCc-eEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence            5778887 9999999999999999999999999988888 6699999998774  567788888888776554311   0


Q ss_pred             cccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208           98 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  177 (411)
Q Consensus        98 ~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~  177 (411)
                      .++   ...-..++++|.+.||+|+|+.++++|.    +|..|++.| .|..++|.|++....       ...+++..+.
T Consensus       623 ~~~---~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~~-------~r~~~~~~~~  687 (693)
T PRK00227        623 GIT---ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPGF-------DRATVERDVT  687 (693)
T ss_pred             CCC---ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCcc-------cHHHHHHHHH
Confidence            111   0011127999999999999999999999    899999998 899999999997321       2466777777


Q ss_pred             HHHc
Q 015208          178 TILG  181 (411)
Q Consensus       178 ~~L~  181 (411)
                      .+|.
T Consensus       688 ~~~~  691 (693)
T PRK00227        688 RVLA  691 (693)
T ss_pred             HHHh
Confidence            7764

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.10  E-value=6.3e-10  Score=85.53  Aligned_cols=63  Identities=22%  Similarity=0.389  Sum_probs=51.7

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc-----cHHHHHHHHH
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT-----RWGLLKKRLM   82 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~-----~~~~l~~~L~   82 (411)
                      +++|+|+++|+||+|++++++|+++|+||.+|.+++.+...+|+|+|.++++.     .|+++++.|.
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~   68 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG   68 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence            36899999999999999999999999999999998844358899999998763     3444444443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.08  E-value=4.6e-10  Score=81.21  Aligned_cols=66  Identities=76%  Similarity=1.488  Sum_probs=61.0

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCC---ccHHHHHHHHHhhCC
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQ---TRWGLLKKRLMGACP   86 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g---~~~~~l~~~L~~~l~   86 (411)
                      ++|+|.+||+.||-.++|+++.+.|++|..++++|||+|+..+|+|.....   .+|+.++++|.++++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP   69 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP   69 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence            478999999999999999999999999999999999999999999998763   589999999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.03  E-value=2.7e-09  Score=81.04  Aligned_cols=68  Identities=28%  Similarity=0.534  Sum_probs=59.4

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      |+++|.++||||+|++|+++|.++|++|.++++.  +.++.+.|.|++. .+|.+. +.+.+++|+++|..+
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999998  5677999999996 677774 457888899888654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.97  E-value=7.3e-09  Score=78.26  Aligned_cols=69  Identities=35%  Similarity=0.493  Sum_probs=60.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  179 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~  179 (411)
                      +.|.|.++|+||+|++++++|+.+|++|.++.+.+. +++..+.|++.++++...++++++++++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTT-GERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999984 459999999998876556667889998888764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.80  E-value=4.2e-08  Score=76.17  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      +.+|++.|+||||+++.++++|+++||||.+++.+  +.|+++.-++.++..      ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999  789999977777632      35778999998654

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.71  E-value=1.6e-07  Score=70.78  Aligned_cols=68  Identities=32%  Similarity=0.561  Sum_probs=56.8

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHH
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      +.+.|.++|+||+|++++++|+++|++|.++.+.  +.++...+.|++. .+|... ++++.++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999988  5566888999996 565653 457888898887553

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.66  E-value=2.3e-07  Score=71.94  Aligned_cols=67  Identities=21%  Similarity=0.280  Sum_probs=54.7

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      +.+|++.++||||+++.++++|+++|+||.+.+..+ .++++.-.+.|.-+      ++..++++++|.+....
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~~   68 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAEE   68 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998 78998888888554      45678888888885543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.60  E-value=3e-07  Score=71.52  Aligned_cols=63  Identities=22%  Similarity=0.225  Sum_probs=51.2

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGA   84 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~   84 (411)
                      +.|++.|+||||+.++++++|+++|+||++++.+..+.+|.-.+.+..+. ...+.+++.|+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-DAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-ccHHHHHHHHHHH
Confidence            67899999999999999999999999999999988555577777777553 3456677666664

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.57  E-value=2.7e-07  Score=71.31  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHH
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  316 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l  316 (411)
                      ++++.|+||||++++++++|+++||||.+.+..  +.++.+.-.|.+. +.+      ...+.|++.|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~------~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDS------ADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCC------CCHHHHHHHHHHHH
Confidence            479999999999999999999999999999866  5777777666665 221      13577777775544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.53  E-value=7.5e-07  Score=69.28  Aligned_cols=64  Identities=14%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      ++++++.|+|||||++.+++.|+++|+||.+++..  ..++.+.-...+..  .+    ...+.|++.|.+.
T Consensus         1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~~F~m~~~~~~--~~----~~~~~l~~~l~~~   64 (77)
T cd04893           1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGTEFALTMLVEG--SW----DAIAKLEAALPGL   64 (77)
T ss_pred             CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcCEEEEEEEEEe--cc----ccHHHHHHHHHHH
Confidence            47899999999999999999999999999999988  46666643333332  22    2357788877553

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.51  E-value=6.5e-07  Score=69.20  Aligned_cols=63  Identities=24%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      .|+|.|+||||+.++++++|+++|+||.+.+..+ .|. |.-.|.|.-|.+.+.+.+++.|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~-f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR-LSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe-eEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999999999999998876 555 87899999887766777888777755

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.34  E-value=4.6e-06  Score=61.96  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=46.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      |.|.|.++||||+|++++++|+++|+||.++.+.+..+ ......+.+.+       ....+++.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999998554 23444443322       2334556566555

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.30  E-value=6e-06  Score=63.49  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhC
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGAC   85 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l   85 (411)
                      .|++.|+||||++++++++|+++|+||.+.+.++  .+..+.-.+.+..+.+ ...+.+++.|+...
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~   67 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA   67 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3789999999999999999999999999999985  3343656667776654 35777877777654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.29  E-value=4.2e-06  Score=62.16  Aligned_cols=63  Identities=24%  Similarity=0.248  Sum_probs=44.9

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      |.|.+.++||||+|++++++|+++|+||.++...+  .++.....|....     .+....+++.++|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSS--DKDGVGIVFIVIV-----VDEEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE--ESSTTEEEEEEEE-----EEGHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe--cCCCceEEEEEEE-----CCCCCHHHHHHHHHc
Confidence            57899999999999999999999999999999884  4432222233221     113456667776654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.27  E-value=5.7e-05  Score=62.26  Aligned_cols=113  Identities=18%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeeccc
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYRAE  100 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~~~  100 (411)
                      -+|.|+..|+||=++.++..|.++|+||..-.|--.|..-+.-+.|..|+     .-.+.|+++          .|... 
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-----~A~~~Lee~----------gF~Vr-   67 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-----EAHSVLEEA----------GFTVR-   67 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-----HHHHHHHHC----------CcEEE-
Confidence            37899999999999999999999999999766644444123445555322     223345542          11111 


Q ss_pred             ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                             ..-++-|..+|+||=|++|+.+|.++++|+..+..|++...+++-+|.+
T Consensus        68 -------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          68 -------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             -------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence                   1246677789999999999999999999999999998888888877766

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.27  E-value=6.1e-06  Score=64.37  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcC------cEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDG------KWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg------~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      .|++.|+|+||+.++++++|+++|+||.+.+..+++      ..+.-.+.+..|.+.+...+++.|+...
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~   70 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC   70 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            378999999999999999999999999999997743      4466778888776556677877777754

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.25  E-value=3.8e-06  Score=66.97  Aligned_cols=65  Identities=15%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC   85 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l   85 (411)
                      ..|++.|+|+||++++++++|+++|+||.+.+..+.+..|.-.+.+.-|. +.+.+.+++.|+...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999987444476777777665 445677777777654

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.16  E-value=7.9e-06  Score=65.28  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC   85 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l   85 (411)
                      .+.|++.|+|+||++++++++|+++|+||.+.+..+.+..+.-.+.+.-+. +.+.+.+++.|++..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~   69 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELG   69 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999999998877554476666666554 334567777676643

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.13  E-value=7.1e-06  Score=65.39  Aligned_cols=49  Identities=14%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  389 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~  389 (411)
                      +.+.+.|+|||||+++||++|+++|+||.+++..  +.++..  .-++.+..|
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f--~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYF--TMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCcc--EEEEEEEeC
Confidence            4689999999999999999999999999999998  666665  555666655

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.08  E-value=1.8e-05  Score=60.80  Aligned_cols=32  Identities=19%  Similarity=0.084  Sum_probs=30.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+.|.|||||+++||++|+++|+||.+++..
T Consensus         2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~   33 (74)
T cd04875           2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQF   33 (74)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence            68899999999999999999999999999987

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.05  E-value=1.6e-05  Score=57.90  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=57.3

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI  179 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~  179 (411)
                      ++|+|.+||+.||=.++++++.+.|++|..+.+.| .|.+..-+|+|......  -+-+|+.|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~--~~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPS--IKVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCC--CcccHHHHHHHHHhc
Confidence            47899999999999999999999999999999998 78889999999865432  245788888888763

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.05  E-value=1.2e-05  Score=64.21  Aligned_cols=50  Identities=14%  Similarity=0.212  Sum_probs=40.5

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  389 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~  389 (411)
                      .+.+.+.|.||||+|++||.+|+++|+||.+++..  ..++..  .-++.+..+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~--~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYF--TMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCee--EEEEEEEec
Confidence            35789999999999999999999999999999988  655554  444444444

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=98.02  E-value=6.6e-05  Score=73.07  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe--cCCCcCCCHHHHHHHHHHHHH
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~--~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      ..+++|++.|+|||||++.|+++|+++|+||.+.+..+...++.    |.+.  .+..+  .+...+.|+++|.+
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~----F~m~i~v~~~~--~~~~~~~L~~~L~~   72 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR----FFMRVEFEGDG--LIFNLETLRADFAA   72 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe----EEEEEEEEeCC--CCCCHHHHHHHHHH
Confidence            35789999999999999999999999999999999873115553    5442  22211  12336788888744

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.00  E-value=2.9e-05  Score=60.48  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+.|.||||++.+||++|+++|+||.+++..
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~   33 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE   33 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee
Confidence            67899999999999999999999999999997

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK07431 aspartate kinase; Provisional

Probab=97.95  E-value=0.015  Score=62.41  Aligned_cols=270  Identities=18%  Similarity=0.138  Sum_probs=148.9

Q ss_pred             EEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208           22 VITVN-CPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYR   98 (411)
Q Consensus        22 ~V~v~-~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~   98 (411)
                      .+++. .++.+|+++++...|.++|.||.--..+.  .+. .--.|.|...+   .+...+.|++.... ...     . 
T Consensus       272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~-~~isf~i~~~d---~~~~~~~l~~l~~~-~~~-----~-  340 (587)
T PRK07431        272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNS-NDIAFTVAENE---LKKAEAVAEAIAPA-LGG-----A-  340 (587)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCC-ccEEEEEeHHH---HHHHHHHHHHHHHH-cCC-----C-
Confidence            34443 57889999999999999999998664432  222 22356665322   12222223321110 100     0 


Q ss_pred             ccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHH
Q 015208           99 AEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH  175 (411)
Q Consensus        99 ~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~  175 (411)
                         .-....+...|.+++.   +.+|+++++..+|++.|++|....  + . +.- -.|.|.        ++..++..+.
T Consensus       341 ---~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~-Is~vv~--------~~d~~~av~~  404 (587)
T PRK07431        341 ---EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVK-VSCVID--------AEDGDKALRA  404 (587)
T ss_pred             ---cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCE-EEEEEc--------HHHHHHHHHH
Confidence               0012346788888885   789999999999999999996444  3 2 221 234442        2334555566


Q ss_pred             HHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEE-eCCc
Q 015208          176 LKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDH  254 (411)
Q Consensus       176 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~-~~DR  254 (411)
                      |.+.+......       .+.         .|-+..+      +        ...=+-|.    ..++...|++. ..++
T Consensus       405 Lh~~f~~~~~~-------~~~---------~~~~~~~------~--------~~~v~gIa----~~~~~~~i~l~~~~~~  450 (587)
T PRK07431        405 VCEAFELEDSQ-------IEI---------NPTASGQ------D--------EPEVRGVA----LDRNQAQLAIRNVPDR  450 (587)
T ss_pred             HHHHhccCCcc-------ccc---------CccccCC------C--------CCcEEEEE----ccCCEEEEEECCCCCC
Confidence            66666432100       000         0000000      0        00012222    23455666665 4788


Q ss_pred             hhHHHHHHHHHHhCCeEEEEEEEEeeecCc--eEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc---eEEEeccCC
Q 015208          255 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL---RVTVVSRGP  329 (411)
Q Consensus       255 pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~--~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~---~~~i~~~~~  329 (411)
                      +|+++.+...|+++|+++..-.-+. ..++  ...=.|.+..        +.+.++...|.. +.+.+   .+.+. .+.
T Consensus       451 ~g~~a~if~~l~~~~i~id~i~~~~-~~~~~~~~~isf~v~~--------~~~~~~~~~l~~-l~~~~~~~~i~~~-~~v  519 (587)
T PRK07431        451 PGMAASIFGALAEANISVDMIVQSQ-RCRSDGTRDISFTVPK--------EDREAAQKVLRE-LAKQLPGAEVEDG-PAI  519 (587)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecC-CCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHhcCCceEEEe-CCe
Confidence            9999999999999999998443210 0121  1221244431        222333332222 22111   11111 111


Q ss_pred             CccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          330 DTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       330 ~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                             ..+.++|.   .+||++..+..+|++.|++|....++
T Consensus       520 -------a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S  556 (587)
T PRK07431        520 -------AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATS  556 (587)
T ss_pred             -------EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeecc
Confidence                   26889997   89999999999999999999777654

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.90  E-value=0.00027  Score=68.79  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=55.4

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEc-CCCccHHHHHHHHHhhCC
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIG-DSQTRWGLLKKRLMGACP   86 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~-~~g~~~~~l~~~L~~~l~   86 (411)
                      ....|+|.|+|||||.++++++|+++|+||.+.+.++  .+..|.-.+.+.- +.+...+.+++.|++...
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~   75 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE   75 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999987  5445767777776 444557788888877553

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.89  E-value=0.00027  Score=68.51  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSASVVLYYR   98 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~~~~~~~   98 (411)
                      .|+|.|+|+|||.+.++++|+++|+||++.+.+.+  +.+|.-.+.+..+.. ...+.+++.|++++....+..- +.  
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i-~l--   78 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTW-EL--   78 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEE-EE--
Confidence            58999999999999999999999999999999873  344767777776653 3567777777772322222100 10  


Q ss_pred             ccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           99 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        99 ~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                         .....  ...|-|.+.-+---|..+......-.+++.=+-+.+
T Consensus        79 ---~~~~~--~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        79 ---ILADK--LKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             ---ecCCC--CcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence               11111  123444444444457777777666655544445544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.82  E-value=0.00048  Score=67.01  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=75.9

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeee
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLY   96 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~   96 (411)
                      ....|+|.|+||||+.++++++|+++|+||.+.+.++  .+..|.-.+.+..|.+...+.+++.|++...... ... ..
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~-l~i-~i   83 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG-MQW-EL   83 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC-cEE-EE
Confidence            3678999999999999999999999999999999974  3333666777776776667788888887654321 100 11


Q ss_pred             ecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           97 YRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        97 ~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                           ......  ..|-|.+.-+---|..+........++..=+-+.|
T Consensus        84 -----~~~~~~--~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         84 -----HDPAAR--PKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             -----eecccC--ceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence                 111111  13334333344456677766666655544455555

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.78  E-value=0.00033  Score=68.21  Aligned_cols=117  Identities=14%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--E-cCcEEEEEEEEE-cCCCccHHHHHHHHHhhCCCCCCccee
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS--T-DGKWCYIVFWVI-GDSQTRWGLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~--t-dg~~~~d~f~V~-~~~g~~~~~l~~~L~~~l~~~~~~~~~   94 (411)
                      ....|+|.|+|||||.+.++++|+++|+||++.+.+  + .|..|+-+.++. .+.+.+.+.+++.|.+.... .+..  
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~-l~l~--   84 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK-FDMQ--   84 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH-hCCe--
Confidence            456899999999999999999999999999999996  3 444343333332 23334566777777664322 1110  


Q ss_pred             eeecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           95 LYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                       +   .+....  ....|-|...-+..-|..+........++..=+-+.+
T Consensus        85 -~---~i~~~~--~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         85 -W---AIHPDG--QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             -E---EEecCC--CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence             0   001111  1123333333334446666666666555544444444

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.77  E-value=3.3e-05  Score=60.90  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCC-CccHHHHHHHHHhhC
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDS-QTRWGLLKKRLMGAC   85 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~-g~~~~~l~~~L~~~l   85 (411)
                      ...|||.|.||||+.+.++++|+++|.||++-..+- +|. |.-.+.|.-+. ..+...+++.+....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~-ftm~~lV~~~~~~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGF-FTMIMLVDISKEVVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhh-ceeeeEEcCChHhccHHHHHHHHHHHH
Confidence            467999999999999999999999999999877655 887 66666666653 345566666666543

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.75  E-value=0.00036  Score=67.96  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=32.9

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  278 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~  278 (411)
                      .+++|++.|+|||||++.|+..|+++|+||.+.+-.
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            457999999999999999999999999999987763

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.73  E-value=0.00021  Score=55.57  Aligned_cols=64  Identities=25%  Similarity=0.303  Sum_probs=47.0

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHL  176 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L  176 (411)
                      -.+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.|.-.     +.+.++.+-+.|
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L   69 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHH
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHH
Confidence            357899999999999999999999999999999999854 6777777777443     334455554443

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.70  E-value=0.00054  Score=66.64  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  278 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~  278 (411)
                      .++++|.|+|||||++.+++.|+++|+||.+.+..
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~   41 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF   41 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence            57899999999999999999999999999977764

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.70  E-value=0.0007  Score=65.67  Aligned_cols=106  Identities=11%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce--EE
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR--VT  323 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~--~~  323 (411)
                      +|++.|+|||||++.+++.|+++|+||.+.+-..+..++.|.-.+.++..+..+    ..+.|+++|.+++...+.  +.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~   77 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE   77 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence            789999999999999999999999999988876322345554333444222112    356777776553444333  33


Q ss_pred             EeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCC
Q 015208          324 VVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLD  361 (411)
Q Consensus       324 i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~g  361 (411)
                      +.....      ..++-|....+..-+.++-...++-.
T Consensus        78 l~~~~~------~~ki~vl~Sg~g~nl~~l~~~~~~g~  109 (280)
T TIGR00655        78 LILADK------LKRVAILVSKEDHCLGDLLWRWYSGE  109 (280)
T ss_pred             EecCCC------CcEEEEEEcCCChhHHHHHHHHHcCC
Confidence            332211      12444444444556666666655443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.66  E-value=0.00036  Score=54.31  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=46.7

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L  312 (411)
                      ..+-|.|.+.||||+|.+|++++++.|+||.+..+.....++.+.-.|.+.     +.+.++++.|.+.|
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L   69 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            346789999999999999999999999999999987321245555445554     45566777776665

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.62  E-value=0.00051  Score=52.32  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      |.|.+.||||+|++|+.++++.|.||.+....+..++.+...|.+.-.     +.+.++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence            678999999999999999999999999888876445777666666443     24455666555544

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.60  E-value=8.9e-05  Score=58.52  Aligned_cols=69  Identities=10%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      ...+|+|.|+||||+.+.++++|+++|+||.+-.=+  -.-+.+.-.+.++..-..    .....++..|.+..+
T Consensus         2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQt--vm~~~ftm~~lV~~~~~~----~d~~~lr~~l~~~~~   70 (90)
T COG3830           2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT--VMDGFFTMIMLVDISKEV----VDFAALRDELAAEGK   70 (90)
T ss_pred             ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH--HHhhhceeeeEEcCChHh----ccHHHHHHHHHHHHH
Confidence            357999999999999999999999999999943322  223445544455421111    234567666655443

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.56  E-value=0.0042  Score=51.40  Aligned_cols=124  Identities=17%  Similarity=0.158  Sum_probs=79.1

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccccccccc
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVE  190 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~  190 (411)
                      .|.|...++||=|+.++.+|.++|+||..-.|.- .++.-+-...|.+       |+.   -    ..+|....      
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~-------~d~---A----~~~Lee~g------   63 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDR-------PDE---A----HSVLEEAG------   63 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCC-------hHH---H----HHHHHHCC------
Confidence            5788999999999999999999999998777754 2332222233311       111   0    22232210      


Q ss_pred             cccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHhCCe
Q 015208          191 MVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI  270 (411)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~  270 (411)
                           +                                    .|.+.       -|+-|.-+|+||=|..|+.+|.++++
T Consensus        64 -----F------------------------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~di   95 (142)
T COG4747          64 -----F------------------------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDADI   95 (142)
T ss_pred             -----c------------------------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhcCc
Confidence                 0                                    12222       27888899999999999999999999


Q ss_pred             EEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          271 QVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       271 ~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      |+.....-. +.-+++-  .++..        +..++.+.+|+.
T Consensus        96 NldYiYAFv-~ek~KAl--li~r~--------ed~d~~~~aLed  128 (142)
T COG4747          96 NLDYIYAFV-TEKQKAL--LIVRV--------EDIDRAIKALED  128 (142)
T ss_pred             Cceeeeeee-ecCceEE--EEEEh--------hHHHHHHHHHHH
Confidence            998777653 2344444  23321        344566666643

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.53  E-value=0.00022  Score=64.11  Aligned_cols=51  Identities=12%  Similarity=0.053  Sum_probs=39.7

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCC
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG  391 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g  391 (411)
                      +.+++.+.||||+|.+||.+|+++|+||.++++.. ++.+ .  ..++.+..+.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~-t~~~-~--~sr~TIvv~~~   53 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP-AEQK-G--ISRITMVVPGD   53 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE-cCCC-C--ccEEEEEEECC
Confidence            47899999999999999999999999999999972 2221 2  23566775543

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.45  E-value=0.0013  Score=50.08  Aligned_cols=61  Identities=3%  Similarity=0.094  Sum_probs=45.6

Q ss_pred             EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208          247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~  313 (411)
                      +.+.+.||||+|.+|++++++.|+||.+...... ..+.+.-.|.+.     +.+.++++.+...|.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence            6789999999999999999999999997776632 234444444444     445677788877763

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.41  E-value=0.00072  Score=63.77  Aligned_cols=65  Identities=22%  Similarity=0.363  Sum_probs=48.8

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCC-ccHHHHHHHHHh
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQ-TRWGLLKKRLMG   83 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g-~~~~~l~~~L~~   83 (411)
                      +...+++.|||++||.++|++.|+.+||||.++..++|  +++|+.-.......+ ...+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence            56899999999999999999999999999999999972  333433333333332 456677777766

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.35  E-value=0.00056  Score=52.85  Aligned_cols=63  Identities=16%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhc
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  408 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~  408 (411)
                      +.+.+...++||+|..|+.+|+.+|+||.++.+.  ......  ..++-+... |.   .+ .++++.+||.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg--~te~~~--~sriti~~~-~~---~~-~i~qi~kQL~   65 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN--ERDTSG--VSEMKLTAV-CT---EN-EATLLVSQLK   65 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec--ccCCCC--eeEEEEEEE-CC---HH-HHHHHHHHHh
Confidence            4788999999999999999999999999999998  333333  556666632 22   22 3556666654

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.25  E-value=0.0014  Score=52.82  Aligned_cols=64  Identities=14%  Similarity=0.021  Sum_probs=48.9

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  409 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~  409 (411)
                      .+.+++...|+||+|..|+..|+.+|+||.++.+.  ..+...  ..++.+... +    .+ .++++.+||.+
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg--~te~~~--iSRmtivv~-~----~~-~i~Qi~kQL~K   71 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL--PIQDGD--KSRIWLLVN-D----DQ-RLEQMISQIEK   71 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe--ecCCCC--ceEEEEEEc-C----ch-HHHHHHHHHhC
Confidence            35789999999999999999999999999999998  443444  566777653 2    23 56777777654

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.24  E-value=0.00084  Score=52.66  Aligned_cols=64  Identities=13%  Similarity=-0.027  Sum_probs=47.4

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  409 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~  409 (411)
                      .+.+.-.++||+|..||.+|+.+|+||.++.+.  ......  +.+|-+....|.   .+ .++++.++|..
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg--~Te~~~--iSRmtivv~~~d---~~-~ieqI~kQL~K   67 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT--HSEQPG--ISNMEIQVDIQD---DT-SLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEec--ccCCCC--ceEEEEEEeCCC---HH-HHHHHHHHHhC
Confidence            678889999999999999999999999999998  333344  566766653232   23 46666666643

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.15  E-value=0.0017  Score=46.79  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=40.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      +.+..+|+||.|++++..|.++|+||.+..++...++..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999998755577887787744

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK07431 aspartate kinase; Provisional

Probab=97.15  E-value=0.38  Score=51.70  Aligned_cols=191  Identities=16%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             CCcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCccee
Q 015208           18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        18 ~~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~   94 (411)
                      .+...|.+++.   +.+|+++++.++|.+.|.||....  +.+.  --.|.|...   +.+...+.|.+.+.........
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~--~Is~vv~~~---d~~~av~~Lh~~f~~~~~~~~~  418 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEV--KVSCVIDAE---DGDKALRAVCEAFELEDSQIEI  418 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC--EEEEEEcHH---HHHHHHHHHHHHhccCCccccc
Confidence            46778899986   789999999999999999997443  2222  134555532   2333445566655322211000


Q ss_pred             eeecccc------cCCCCCceEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeCCC--CeEEEEEEEEcCCCcCCC
Q 015208           95 LYYRAEM------QAPKPSDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPD--GKVMDLFFVTDTRELLHT  165 (411)
Q Consensus        95 ~~~~~~~------~~~~~~~~t~i~v~-~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~--~~~~d~F~V~~~~~~~~~  165 (411)
                      .+.....      .-....+...|++. .++.+|+++++...|+++|++|..-......+  |..--.|.+..       
T Consensus       419 ~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-------  491 (587)
T PRK07431        419 NPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-------  491 (587)
T ss_pred             CccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-------
Confidence            1110000      01223455666665 47889999999999999999997543321111  22222344422       


Q ss_pred             HhHHHHHHHHHHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCce
Q 015208          166 RKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHT  245 (411)
Q Consensus       166 ~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t  245 (411)
                       +++.+..+.+.+ +....                      +                       ...+.++    ++..
T Consensus       492 -~~~~~~~~~l~~-l~~~~----------------------~-----------------------~~~i~~~----~~va  520 (587)
T PRK07431        492 -EDREAAQKVLRE-LAKQL----------------------P-----------------------GAEVEDG----PAIA  520 (587)
T ss_pred             -HHHHHHHHHHHH-HHHhc----------------------C-----------------------CceEEEe----CCeE
Confidence             222233222222 22100                      0                       0122222    3567


Q ss_pred             EEEEEeC---CchhHHHHHHHHHHhCCeEEE
Q 015208          246 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS  273 (411)
Q Consensus       246 vi~v~~~---DRpGLL~~i~~~l~~~g~~i~  273 (411)
                      .|.+.|.   .+||++.++..+|.+.|+++.
T Consensus       521 ~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~  551 (587)
T PRK07431        521 KVSIVGAGMPGTPGVAARMFRALADAGINIE  551 (587)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCcEE
Confidence            8888885   889999999999999999997

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.07  E-value=0.0031  Score=59.56  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      ..+++++.|+|++|+.++|++.|+++||||.++.-++.. .|++.---......+.    ...+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~----~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP----LDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCc----ccHHHHHHHHHH
Confidence            678999999999999999999999999999999998643 4554333333222221    234566666666

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.07  E-value=0.0061  Score=45.41  Aligned_cols=61  Identities=23%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC----CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  177 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~----~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~  177 (411)
                      +.|..+|+||+|++|+.+|+++|+||.+.......    .+.+.-.|.+...     +.+.++.+.+.|+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHH
Confidence            35778999999999999999999999887765422    3555444544332     2344555544443

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.05  E-value=0.0047  Score=47.78  Aligned_cols=66  Identities=11%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..+.+...|+||.|++++++|+..|+||.+..+.-+.+....-...+..  |   ++..+++|.+.|.+..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCCc
Confidence            4689999999999999999999999999998886434333322222212  2   2455667777666643

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.97  E-value=0.0046  Score=47.85  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+++...++||+|..++.+|+.+|+||.++.+.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~   37 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT   37 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence            4789999999999999999999999999999998

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.95  E-value=0.0065  Score=48.92  Aligned_cols=68  Identities=15%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      .....|.+...|+||+|++|++.|+..|+||.+-.+.-+.+..+--...+..  +    ++.+++|.+.|.+..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----chHHHHHHHHHhCCc
Confidence            4556799999999999999999999999999998876544433222222222  1    345677777777644

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.94  E-value=0.0075  Score=45.92  Aligned_cols=63  Identities=14%  Similarity=0.207  Sum_probs=44.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHh-HHHHHHHHHHH
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK-RKEDTYEHLKT  178 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~-~~~~l~~~L~~  178 (411)
                      .+.+.++|+||++++|+..|+++|+||......+..++.+.-.|.+...+     .+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence            57899999999999999999999999988876543346555556664332     22 45555555444

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.92  E-value=0.0054  Score=49.14  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=51.1

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCC-CCChhhHHHHHHHHhccC
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL-SVPRNKIEEGVWKLLMGW  410 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~-~~~~~~~~~~~~~~~~~~  410 (411)
                      ++-+.-.|+||-|+++-..|+++|||+.++++.  ......|+ |.|||.- .|. ....+++++.+++.|+.+
T Consensus        16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSR--P~~~~~~~-Y~FfVDi-eg~~~~~~~~~l~~L~~~~~~~   85 (90)
T cd04931          16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESR--PSRLNKDE-YEFFINL-DKKSAPALDPIIKSLRNDIGAT   85 (90)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec--cCCCCCce-EEEEEEE-EcCCCHHHHHHHHHHHHHhCCC
Confidence            455566899999999999999999999999998  55455564 5699984 454 222223788888877643

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.92  E-value=0.0063  Score=46.57  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=41.5

Q ss_pred             EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208          247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L  312 (411)
                      +.|.+.||+|+|++|+.++++.|+||.+..+.  +.+ .    .+++..   +.+.++++.|.++|
T Consensus         3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~----i~l~i~---v~~~~~L~~li~~L   58 (74)
T cd04877           3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R----IYLNFP---TIEFEKLQTLMPEI   58 (74)
T ss_pred             EEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e----EEEEeE---ecCHHHHHHHHHHH
Confidence            68999999999999999999999999988876  332 2    233321   33456777776665

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.89  E-value=0.0061  Score=45.42  Aligned_cols=61  Identities=15%  Similarity=0.079  Sum_probs=41.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc-----CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD-----GKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td-----g~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +.|..+|+||+|++++.+|+++|+||.+......     .......|.+........+.+.+.|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence            3577899999999999999999999998877542     232445555554332344455555554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.88  E-value=0.0059  Score=46.76  Aligned_cols=63  Identities=14%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             EEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHHH
Q 015208          340 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWKL  406 (411)
Q Consensus       340 ~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~~  406 (411)
                      -+.-.|+||.|+++...|+++|+||.+.++. |..+...  .+.||+.- .|..-..+  .+++.+++.
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Sr-p~~~~~~--~~~f~id~-~~~~~~~~~~~~l~~l~~~   67 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESR-PSRKGLW--EYEFFVDF-EGHIDDPDVKEALEELKRV   67 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEee-ecCCCCc--eEEEEEEE-ECCCCCHHHHHHHHHHHHh
Confidence            3455799999999999999999999999776 4444344  56688885 45422222  256666653

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.88  E-value=0.0064  Score=47.73  Aligned_cols=66  Identities=17%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      .|.+...|+||.|++|++.|+..|+||.+-.+..+.+..+--.-.+.+ .|   ++..++++.+.|.+..
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~---d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ---DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC---CHHHHHHHHHHHhCCc
Confidence            588999999999999999999999999999887655433322222222 12   3455677777776644

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.86  E-value=0.0052  Score=45.47  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccC--cceeeEEEEEE
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLL  386 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g--~~~~~~~~f~v  386 (411)
                      +.+...|+||++.+++.+|++.|+||.++.+.  ..+  +..  ...|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~~~~--~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG--RKEKGGIA--YMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe--ccCCCCEE--EEEEEc
Confidence            67889999999999999999999999999988  433  344  444555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.85  E-value=0.0059  Score=54.05  Aligned_cols=64  Identities=17%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  409 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~  409 (411)
                      +.+++.-.|+||.|.+|+.+|+++|+||.++.+.  ..+...  ..++.++. +|   +.+ .++++.+||..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~--~t~~~~--~sriti~V-~~---d~~-~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG--PTEDPD--LSRMTIVV-VG---DDK-VLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe--ecCCCC--EEEEEEEE-EC---CHH-HHHHHHHHHhc
Confidence            3688899999999999999999999999999988  333233  44455554 34   333 57777777643

acetohydroxyacid synthase is a synonym.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.80  E-value=0.0095  Score=44.46  Aligned_cols=58  Identities=16%  Similarity=0.120  Sum_probs=42.0

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      .+++|..+|+||.+++++.+|.++|+||....++..+..  .++.+...   +.+.+.+.|++
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~---~~~~~~~~L~~   59 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVS---DPDKAKEALKE   59 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEEC---CHHHHHHHHHH
Confidence            468899999999999999999999999999998764332  34444331   23445455554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.78  E-value=0.011  Score=45.24  Aligned_cols=34  Identities=26%  Similarity=0.555  Sum_probs=32.0

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~   35 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP   35 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence            4789999999999999999999999999999977

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.75  E-value=0.0051  Score=46.40  Aligned_cols=59  Identities=22%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             EEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          340 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       340 ~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      -+.+.|+||.+.+++.+|+++|+||.++.+.....++.+  ...|.+.   + +.... +++.+++
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~--~~~i~v~---~-~~~~~-~~~~l~~   61 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEA--LMVLSVD---E-PVPDE-VLEELRA   61 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEE--EEEEEeC---C-CCCHH-HHHHHHc
Confidence            468899999999999999999999999987632234444  3434333   3 34445 6666654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.74  E-value=0.014  Score=43.71  Aligned_cols=48  Identities=19%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCC-eEEEEEEEE
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT  157 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~-~~~d~F~V~  157 (411)
                      +.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            568889999999999999999999999998877663222 333345553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.73  E-value=0.009  Score=46.42  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=44.4

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      ++.+.-.|+||.|+++...|+++|+||.++++.  ..+...| .+.|||.. +|..-..+  .+++.+++
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~-~~~f~vd~-~~~~~~~~~~~~l~~l~~   68 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLW-EYVFFIDF-EGHIEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCc-eEEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence            566777899999999999999999999999876  3333333 56788875 34311222  25555555

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.68  E-value=0.0074  Score=46.36  Aligned_cols=49  Identities=12%  Similarity=0.027  Sum_probs=38.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCC
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG  391 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g  391 (411)
                      +-+.-.|+||-|+++-..|+++|||+.++++.  ...+..|+ |.|||.- .|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSR--P~~~~~~~-y~Ffvd~-~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESR--PSRRNGSE-YEFFVDC-EV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECC--CCCCCCce-EEEEEEE-Ec
Confidence            34455789999999999999999999999998  44455554 5588884 45

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.67  E-value=0.015  Score=51.39  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=50.2

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..+.|...|+||.|++|++.|+.+|+||.+..+..+. .+...-+|.|..      ++...++|.+.|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999999887654 455555566632      2455677777777754

acetohydroxyacid synthase is a synonym.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.66  E-value=0.0085  Score=44.70  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      ..+.|..+|+||.|++++..|+++|+||.+..++.. ++.  -++.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~-~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT-SEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec-CCC--CEEEE
Confidence            467889999999999999999999999999998773 343  34554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.66  E-value=0.013  Score=44.54  Aligned_cols=61  Identities=10%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHH-HHHHHHHHH
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRL  312 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~-~~~~l~~~L  312 (411)
                      .+.+.+.||||+|++|+++++++|+||....... ..++.+.-.|.+.     +.+.+ ++++|.+.|
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~-----v~~~~~~l~~l~~~L   63 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISID-----TSTMNGDIDELLEEL   63 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEE-----cCchHHHHHHHHHHH
Confidence            4789999999999999999999999999665431 1223344334444     23334 667776665

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.66  E-value=0.0073  Score=43.37  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=38.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEc
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIG   68 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~   68 (411)
                      +.+..+|+||.++++++.|.++|+||...+++. ++...+..|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            357889999999999999999999999999876 4344777787774

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.66  E-value=0.016  Score=43.84  Aligned_cols=46  Identities=24%  Similarity=0.368  Sum_probs=35.4

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEE
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFV  156 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V  156 (411)
                      -|.+.+.|++|++++++.+|+++|+||.+....+..+ +.+.-.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            4778899999999999999999999999887755323 444333433

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.64  E-value=0.014  Score=52.43  Aligned_cols=66  Identities=14%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                      ..+.+.+.|+||+|++++++|+.+|+||.+..+..+.+ |..  .+.+.-+.    ++..++.|.+.|.+...
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~----~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPG----DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEEC----CHHHHHHHHHHHHHHhH
Confidence            47899999999999999999999999999998865333 322  23332222    12336788888888554

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.63  E-value=0.0098  Score=52.85  Aligned_cols=64  Identities=17%  Similarity=0.162  Sum_probs=45.8

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhcc
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  409 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~~  409 (411)
                      +.+++.-.|+||.|.+|+.+|+++|+||.++.+.  ......  ..++.++. +|   +.. .++++.+||..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~--~te~~~--~sriti~V-~~---~~~-~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG--PTEDPG--LSRMTIVT-SG---DEQ-VIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee--ecCCCC--EEEEEEEE-EC---CHH-HHHHHHHHHhc
Confidence            4688899999999999999999999999999987  332222  34455553 23   333 56667666643

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=96.62  E-value=0.0081  Score=46.26  Aligned_cols=64  Identities=14%  Similarity=0.046  Sum_probs=45.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHH
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL  406 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~  406 (411)
                      +-+.-.|+||-|+++-..|+.+|+|+.++++.  ......|+ |.|||.- .|..-.-+++++.+++.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSR--P~~~~~~~-y~F~id~-e~~~~~i~~~l~~l~~~   66 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESR--KSKRRSSE-FEIFVDC-ECDQRRLDELVQLLKRE   66 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec--cCCCCCce-EEEEEEE-EcCHHHHHHHHHHHHHh
Confidence            34445799999999999999999999999998  44445554 5699885 45432322356666653

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.62  E-value=0.025  Score=43.87  Aligned_cols=50  Identities=22%  Similarity=0.368  Sum_probs=38.9

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcC
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT  159 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~  159 (411)
                      +.+.+..+|+||.|+++...|+++|+||.+-......++...-.|+|...
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~   51 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE   51 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence            45677789999999999999999999998887665444445556777544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.61  E-value=0.019  Score=51.04  Aligned_cols=66  Identities=15%  Similarity=0.233  Sum_probs=50.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                      ..+.+...|+||.|++|++.|+.+|+||.+..+..+. .+...-+|.|..      ++..++++...|.+...
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcccc
Confidence            4688999999999999999999999999998887544 455555555532      24557778777777553

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.60  E-value=0.017  Score=44.64  Aligned_cols=64  Identities=13%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEE-EEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d-~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..+.+...|+||.|++++++|+..|+||.+..+.-+.++...- ++.| . +     +..++.|.+.|.+..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcCc
Confidence            5789999999999999999999999999999987655544333 3334 2 1     334667777766643

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.58  E-value=0.023  Score=42.06  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      .+.+.+.|+||++++++..|+++|++|.+....+. .++.+.-.|.+...     + ..++.+.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD-----D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC-----H-HHHHHHHHHHhC
Confidence            36778999999999999999999999999888764 34555545555321     2 344555454443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.56  E-value=0.014  Score=43.63  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  278 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~  278 (411)
                      +.+.+..+|+||.|.++++.|+++|+||.+....
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~   35 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL   35 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence            4678899999999999999999999999977655

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.54  E-value=0.042  Score=47.37  Aligned_cols=76  Identities=13%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             EEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-c-CcEEEEEEEEEcCCC-ccHHHHHHHHHh
Q 015208            8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-D-GKWCYIVFWVIGDSQ-TRWGLLKKRLMG   83 (411)
Q Consensus         8 ~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-d-g~~~~d~f~V~~~~g-~~~~~l~~~L~~   83 (411)
                      .++...+......+.+.+.+.|+||+|++++++|+++|.||.+....+ . +..+.-.|.+.-++. ...+.+.+.|++
T Consensus        44 ~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~  122 (136)
T PRK08577         44 IHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKK  122 (136)
T ss_pred             EEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHc
Confidence            333333444555889999999999999999999999999999888755 2 332334444443332 234455555544

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.54  E-value=0.018  Score=43.58  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeec-C-ceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-G-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~-g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~  313 (411)
                      .+.+.+.||||+|.+++++|+++|++|......  +. + +.+. +.++..    ..+.++++.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~--~~~~~~~~~-~~i~~~----~~~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK--EADGGETAP-VVIVTH----ETSEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc--ccCCCCcee-EEEEEc----cCCHHHHHHHHHHHH
Confidence            578899999999999999999999999977764  22 2 3333 233331    233456666666553

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.53  E-value=0.0048  Score=45.97  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=35.9

Q ss_pred             CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          345 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       345 DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      |+||+|..|+.+|+..|+||.++.+.  ......  ..++.+.. .|.+-..++++.++.|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~--~~~~~~--~~riti~v-~~~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVG--PTEDPG--ISRITIVV-SGDDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEE--E-SSTT--EEEEEEEE-ES-CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEee--ecCCCC--EEEEEEEE-eeCchhHHHHHHHHhc
Confidence            68999999999999999999999999  433333  44566653 3433222334444443

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.52  E-value=0.0031  Score=47.14  Aligned_cols=58  Identities=19%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      +-+.+.||||++.+++..|++.|+||..+.+.  ..++.+  ...|.+..+    ...+ +++.+++
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a--~~~~~~~~~----~l~~-li~~l~~   59 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIG--YVVIDIDSE----VSEE-LLEALRA   59 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEE--EEEEEcCCC----CCHH-HHHHHHc
Confidence            44688999999999999999999999998776  554555  444444432    2233 6666664

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.49  E-value=0.026  Score=41.96  Aligned_cols=60  Identities=20%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc-CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD-GKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td-g~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      ++.+.++|+||.+++++..|+++++||.+.....+ +....-.|.+...  ...+.+.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~L~~   62 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV--GDIEELVEELRS   62 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc--ccHHHHHHHHhC
Confidence            57889999999999999999999999998887663 2324344555533  233344444443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.48  E-value=0.025  Score=48.81  Aligned_cols=69  Identities=16%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CCCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCH-HHHHHHHHHH
Q 015208          239 SLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP-SKQNGLSSRL  312 (411)
Q Consensus       239 ~~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~-~~~~~l~~~L  312 (411)
                      ...+..+.+.+.+.||||+|++++++|+++|++|.+....+...++.+.-.|.+.     +++. .+++.+.+.|
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve-----v~~~~~~l~~l~~~L  120 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD-----LSKSDIDLEELEEEL  120 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE-----eCCchhhHHHHHHHH
Confidence            3455688999999999999999999999999999977765321133343334444     2221 3556666665

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.46  E-value=0.012  Score=43.43  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=38.2

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV  156 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V  156 (411)
                      +.+...|++|++++++.+|+++|+||.+....... ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57889999999999999999999999999987633 3666667766

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK04435 hypothetical protein; Provisional

Probab=96.42  E-value=0.037  Score=48.50  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          101 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       101 ~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      +.....+....|.+...|+||+|++|+..|+++|+||.........+|.+.-.|.|...+.    ...++.|.+.|++
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~----~~~L~~Li~~L~~  134 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM----EGDIDELLEKLRN  134 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh----HHHHHHHHHHHHc
Confidence            3445677889999999999999999999999999999988765534576666666644321    1245555444444

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.39  E-value=0.028  Score=41.55  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=35.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      +.+..+|+||.+++++..|+++|+||.+...... .++...-.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            5778999999999999999999999998887652 24554444444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.37  E-value=0.018  Score=42.21  Aligned_cols=45  Identities=24%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV  156 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V  156 (411)
                      +.+..+|+||-|+++++.|+++|+||.+...+... .+...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67788999999999999999999999888776532 2454444444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.35  E-value=0.019  Score=43.20  Aligned_cols=47  Identities=23%  Similarity=0.437  Sum_probs=37.8

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEEEc
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD  158 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V~~  158 (411)
                      +.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4568899999999999999999999988877553 3567776776643

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=96.33  E-value=0.035  Score=48.65  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             CCcEEEEEecCCCCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCc-cHHHHHHHH
Q 015208            5 YDDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQT-RWGLLKKRL   81 (411)
Q Consensus         5 ~~~~v~~~~~~~~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~-~~~~l~~~L   81 (411)
                      |++.|.--..........+.+...|+||++++|.++|+.+|+||.......  +|. +--.|.+...+.. ..+.+.+.|
T Consensus        54 ykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~-a~vs~tVevs~~~~~L~~Li~~L  132 (147)
T PRK04435         54 YKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGR-ANVTISIDTSSMEGDIDELLEKL  132 (147)
T ss_pred             CCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCE-EEEEEEEEeCChHHHHHHHHHHH
Confidence            445555543444556789999999999999999999999999999887754  453 5456666654332 344444444


Q ss_pred             Hh
Q 015208           82 MG   83 (411)
Q Consensus        82 ~~   83 (411)
                      ++
T Consensus       133 ~~  134 (147)
T PRK04435        133 RN  134 (147)
T ss_pred             Hc
Confidence            43

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.25  E-value=0.027  Score=41.87  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      .+.+.++|+||.|++++..|+++++||.+....+..++...-.|.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            5788999999999999999999999999888766333444434444

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.24  E-value=0.033  Score=41.16  Aligned_cols=58  Identities=17%  Similarity=0.097  Sum_probs=41.7

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-c-CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-D-GKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-d-g~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +.+.++|+||.+++++..|+++|+||....... + +....-.|.+.+.   ..+.+.+.|++
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~---~~~~~i~~l~~   61 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP---IDEEVIEEIKK   61 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC---CCHHHHHHHHc
Confidence            578899999999999999999999999888755 2 3324344555543   34455555554

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.13  E-value=0.027  Score=41.29  Aligned_cols=55  Identities=22%  Similarity=0.237  Sum_probs=41.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc---CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD---GKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td---g~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +.+..+|+||-+++++++|+++|.||.+...+..   |. ..-.|.+..     .+.+.+.|++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~-~~v~~~ve~-----~~~~~~~L~~   59 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK-ALLIFRTED-----IEKAIEVLQE   59 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe-EEEEEEeCC-----HHHHHHHHHH
Confidence            6788899999999999999999999998887552   44 545666653     3455555554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.12  E-value=0.047  Score=40.38  Aligned_cols=61  Identities=18%  Similarity=0.153  Sum_probs=43.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      .+.+.+.|+||++++++.+|+++|.||......+.  +..+.-.|.+..++ ...+.+.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-HHHHHHHHHHhC
Confidence            36788999999999999999999999998888653  33355566666433 344444444443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK06635 aspartate kinase; Reviewed

Probab=96.04  E-value=0.7  Score=47.17  Aligned_cols=108  Identities=20%  Similarity=0.286  Sum_probs=67.2

Q ss_pred             eEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208          109 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  187 (411)
Q Consensus       109 ~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~  187 (411)
                      ...|++.+ .++||.++++..+|+++|+||.........+|..--.|.|..        ++.++..+.|.+ +...    
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~----  328 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDE----  328 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHH----
Confidence            34455554 678999999999999999999865433212223444555522        223333333333 1110    


Q ss_pred             ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEe---CCchhHHHHHHHH
Q 015208          188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIMRT  264 (411)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~---~DRpGLL~~i~~~  264 (411)
                              .          .                       ...|.+    .++..++++.|   +|+||++.++.++
T Consensus       329 --------~----------~-----------------------~~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~  363 (404)
T PRK06635        329 --------I----------G-----------------------AESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEA  363 (404)
T ss_pred             --------c----------C-----------------------cceEEE----cCCeEEEEEECCCCCCCchHHHHHHHH
Confidence                    0          0                       012322    23557788876   6899999999999


Q ss_pred             HHhCCeEEEE
Q 015208          265 LKDYNIQVSY  274 (411)
Q Consensus       265 l~~~g~~i~~  274 (411)
                      |++.|+||..
T Consensus       364 La~~~Ini~~  373 (404)
T PRK06635        364 LAEEGINIQM  373 (404)
T ss_pred             HHHCCCCEEE
Confidence            9999999985

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.04  E-value=0.056  Score=38.87  Aligned_cols=45  Identities=31%  Similarity=0.462  Sum_probs=35.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      |.+.++|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~   45 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL   45 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence            467799999999999999999999999998876333444444444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.99  E-value=0.0091  Score=44.53  Aligned_cols=44  Identities=14%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      +.+.+.|+||++++++..|+++|+||......+ .++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEc
Confidence            567899999999999999999999998876654 34666555555

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.96  E-value=0.045  Score=39.40  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcC-cEEEEEEEEEcCCCccHHHHHHHH
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDG-KWCYIVFWVIGDSQTRWGLLKKRL   81 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg-~~~~d~f~V~~~~g~~~~~l~~~L   81 (411)
                      +.+.++|+||++..++..|.+++++|.+..+...+ .+....|.+..++....+.+.+.|
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   60 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKL   60 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHH
Confidence            35778999999999999999999999999886632 434445656544432333343333

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.95  E-value=0.063  Score=36.61  Aligned_cols=33  Identities=39%  Similarity=0.500  Sum_probs=30.2

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                      |.+.++|++|.++++++.|+.+|++|.......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            467899999999999999999999999998766

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.92  E-value=0.055  Score=40.96  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                      +.+.-+|+||-|++++..|+++|.||.+.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~   34 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF   34 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence            577889999999999999999999998876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.83  E-value=0.098  Score=39.22  Aligned_cols=60  Identities=25%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +.+.+..+|+||.+++++++|+++|+||.+.....  .+....-+|.+....   .+.+.+.|++
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~---~~~~~~~L~~   63 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN---PRPIIEDLRR   63 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC---HHHHHHHHHH
Confidence            57899999999999999999999999999887643  222255667665322   2355555654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=95.80  E-value=0.028  Score=47.10  Aligned_cols=64  Identities=11%  Similarity=-0.014  Sum_probs=46.0

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      ++-+.-.|+||-|+++-..|+++|||+.++++.  ..+...|+ |.|||.- .|..-+-+.+++.+++
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESR--P~~~~~~e-Y~FfIdi-eg~~~~~~~aL~~L~~  106 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESR--PSRKEGGD-LEVLVRC-EVHRSDLLQLISSLRQ  106 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECC--cCCCCCce-EEEEEEE-EeCHHHHHHHHHHHHH
Confidence            555666899999999999999999999999998  55555564 5588874 4433222224555554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.80  E-value=0.054  Score=40.97  Aligned_cols=60  Identities=18%  Similarity=0.101  Sum_probs=40.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE----cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST----DGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t----dg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +.+.-+|+||-+++++..|+++|.||.+.....    .+. -...+.+.......++.+.+.|++
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~-~~~~v~v~~e~~~~~~~i~~~L~~   65 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGM-RRVFIRVTPMDRSKENELIEELKA   65 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCc-cEEEEEEEEecchHHHHHHHHHhC
Confidence            678899999999999999999999999887644    233 234444443111124455555543

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=95.77  E-value=1.1  Score=46.49  Aligned_cols=110  Identities=21%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             CCCceEEEEEeCC---chhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          241 SPGHTLVQIVCQD---HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       241 ~~~~tvi~v~~~D---RpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      .++.+.|++.+.-   ++|.+.++..+|.++|++|.  -|.+  .-....=.|++..        .......+.|.+...
T Consensus       304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~--~I~q--~~~~~~i~~~v~~--------~~~~~a~~~l~~~~~  371 (447)
T COG0527         304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVD--LITQ--SISEVSISFTVPE--------SDAPRALRALLEEKL  371 (447)
T ss_pred             CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEE--EEEe--ccCCCeEEEEEch--------hhHHHHHHHHHHHHh
Confidence            3567788888643   56999999999999999998  3431  1111112355542        122222233333332


Q ss_pred             CCc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          318 QPL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       318 ~~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ... .+.+. ++.       ..+.++|.   ..||+...+..+|++.++||....++
T Consensus       372 ~~~~~v~~~-~~~-------a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS  420 (447)
T COG0527         372 ELLAEVEVE-EGL-------ALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS  420 (447)
T ss_pred             hhcceEEee-CCe-------eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC
Confidence            221 12221 211       26777776   78999999999999999999999865

>PRK11899 prephenate dehydratase; Provisional

Probab=95.66  E-value=0.042  Score=53.32  Aligned_cols=64  Identities=14%  Similarity=0.051  Sum_probs=47.0

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      ++-+.-.||||.|+++-..|+++|||+.++++.  ..+++.|+ |.||+.- .|..-+++  ..++.|++
T Consensus       196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSR--P~~~~~~~-Y~F~id~-eg~~~d~~v~~aL~~l~~  261 (279)
T PRK11899        196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESY--MVGGSFTA-TQFYADI-EGHPEDRNVALALEELRF  261 (279)
T ss_pred             EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEee--ecCCCCce-EEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence            344444799999999999999999999999998  66666774 5599885 56544444  14555544

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.54  E-value=0.092  Score=35.72  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 015208           23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST   55 (411)
Q Consensus        23 V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t   55 (411)
                      |.+.++|++|++++++++|.++|++|.......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            468899999999999999999999999998865

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.54  E-value=0.18  Score=37.76  Aligned_cols=47  Identities=21%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      +.+.+..+|+||.|.+++..|+++|+||.+....-. .++...-.|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            468889999999999999999999999987765432 23455555655

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.52  E-value=0.043  Score=50.94  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHH
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG  402 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~  402 (411)
                      +.+-+.-.||||++..|+.+|.++||||..+.+.|...|+.|  +  +.+. . +.+++.+ ++|.
T Consensus       149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A--i--~vl~-v-D~~v~~~-vl~~  207 (208)
T TIGR00719       149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA--L--LTIE-I-DKNIDDH-IKDA  207 (208)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE--E--EEEE-e-CCCCCHH-HHhh
Confidence            367788899999999999999999999999999976677777  2  2333 2 3455555 4443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=95.41  E-value=0.014  Score=46.09  Aligned_cols=28  Identities=14%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             EEEEEeCC-chhHHHHHHHHHHhCCeEEE
Q 015208          246 LVQIVCQD-HKGLLYDIMRTLKDYNIQVS  273 (411)
Q Consensus       246 vi~v~~~D-RpGLL~~i~~~l~~~g~~i~  273 (411)
                      +|++.|+| +.|+++.++++|+++|+||.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~   29 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNID   29 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHH
Confidence            58999999 99999999999999999997

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.40  E-value=0.027  Score=42.91  Aligned_cols=66  Identities=15%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEE--ecCCCcCCCHHHHHHHHHHH
Q 015208          247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM--QADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v--~~~g~~~~~~~~~~~l~~~L  312 (411)
                      |++.|+-||-.+||++-+|+.+|+-|.+|.|.....+++-..+|-+  ...+..++.+....++...+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv   70 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRV   70 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHH
Confidence            6889999999999999999999999999999865556676666643  33344455444445555443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.35  E-value=0.1  Score=53.36  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=49.0

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC----CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~----~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      -.+.|.|.+.||+|+|++|+.+|++.++||.+....+.    .++.+.-.|.|.-.     +.+.++++.+.|++
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999988763    34665545555322     34456666555554

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=95.19  E-value=0.017  Score=45.57  Aligned_cols=61  Identities=20%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             EEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEE-----c-----CcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           23 ITVNCPD-KTGLGCDLCRIILFFGLSIVRGDVST-----D-----GKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        23 V~v~~~D-r~Gl~~~i~~~L~~~glnI~~a~i~t-----d-----g~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      |+|+|+| ..|++++++++|+++|+||.+-+-.+     .     +. ....|.|..++ .+.+.+++.|.+.-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~-~~~e~~v~~~~-~~~~~lr~~L~~la   73 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPK-ACVEFSVRGQP-ADLEALRAALLELA   73 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCc-EEEEEEEeCCC-CCHHHHHHHHHHHh
Confidence            7999999 99999999999999999998655422     1     23 45778888665 56777877776543

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.01  E-value=0.18  Score=37.48  Aligned_cols=56  Identities=21%  Similarity=0.182  Sum_probs=39.3

Q ss_pred             CCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           29 DKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        29 Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      |+||.+.+++++|...|+||.+-.+..  ++...--++.|... ....+.+.+.|++..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-chhHHHHHHHHhccC
Confidence            789999999999999999999999965  55534344545432 234566766777643

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.95  E-value=0.27  Score=39.29  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                      +.+.|.+..+|+||-|+++...|+.+|+|+.+-.-.-..+....-.|||.-. |. . ...++.+-+.|.+.+.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~-~-~~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK-S-APALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-C-CHHHHHHHHHHHHHhC
Confidence            4467777779999999999999999999996554443233333446777433 33 1 2334444444555443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=94.67  E-value=0.78  Score=46.87  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=67.4

Q ss_pred             CCceEEEEEeCCc-hhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208          242 PGHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  320 (411)
Q Consensus       242 ~~~tvi~v~~~DR-pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~  320 (411)
                      ++...+++.+.+. ||.+.+|..+|.++|++|..-..+    ...  -.|++..        +..+++.+.|.. +..  
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~----~~~--is~~v~~--------~~~~~a~~~l~~-~~~--  331 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF----PTE--VVFTVSD--------EDSEKAKEILEN-LGL--  331 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec----Cce--EEEEEcH--------HHHHHHHHHHHH-hCC--
Confidence            4566778877665 999999999999999999955322    121  1355431        233444444433 221  


Q ss_pred             eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208          321 RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  368 (411)
Q Consensus       321 ~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~  368 (411)
                      .+.+. .+.       ..+.|.|.   ++||++..+..+|++.|+||....
T Consensus       332 ~v~~~-~~~-------a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~  374 (403)
T PRK08210        332 KPSVR-ENC-------AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA  374 (403)
T ss_pred             cEEEe-CCc-------EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe
Confidence            22221 111       26778886   799999999999999999997644

>PRK07334 threonine dehydratase; Provisional

Probab=94.66  E-value=0.21  Score=51.06  Aligned_cols=66  Identities=9%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeee---cCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t---~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      ..-|.|.+.||||+|.+|+.+|++.++||.+....+..   .++.+.-.|.+.     +.+.++++.+.+.|..
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            37899999999999999999999999999988765210   123333233343     4556788888777643

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.60  E-value=0.23  Score=54.34  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~  313 (411)
                      ....|.|.+.||+|||.+|+.++++.++||....+.+...++.+.-.|.+.     +.+.+++..|...|.
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~  730 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN  730 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            446889999999999999999999999999988876321134444445454     555667777777653

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.46  E-value=4.3  Score=41.34  Aligned_cols=105  Identities=19%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             ceEEEEEE---ecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccc
Q 015208          108 DVFLLKLS---CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  184 (411)
Q Consensus       108 ~~t~i~v~---~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~  184 (411)
                      +...|+|.   -.+++|+++++...|+++|++|......  ..+ .--.|.|.        .+..++..+.|.+.+..  
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~-~~Is~~V~--------~~d~~~a~~~L~~~~~~--  325 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSE-TSISLTVD--------ETDADEAVRALKDQSGA--  325 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCC-ceEEEEEe--------HHHHHHHHHHHHHHHHh--
Confidence            45567777   4678999999999999999999644321  112 11245552        12233333333332211  


Q ss_pred             cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHHH
Q 015208          185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI  261 (411)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i  261 (411)
                                 .          .                       ...+.++    .+..+|.+.|.   ++||+++.+
T Consensus       326 -----------~----------~-----------------------~~~i~~~----~~~a~IsvVG~~~~~~~g~~a~i  357 (401)
T TIGR00656       326 -----------A----------G-----------------------LDRVEVE----EGLAKVSIVGAGMVGAPGVASEI  357 (401)
T ss_pred             -----------c----------C-----------------------CceEEEe----CCeEEEEEECCCcccCccHHHHH
Confidence                       0          0                       0123322    35678888885   799999999


Q ss_pred             HHHHHhCCeEEE
Q 015208          262 MRTLKDYNIQVS  273 (411)
Q Consensus       262 ~~~l~~~g~~i~  273 (411)
                      .++|.+.|+||.
T Consensus       358 ~~~L~~~gIni~  369 (401)
T TIGR00656       358 FSALEEKNINIL  369 (401)
T ss_pred             HHHHHHCCCcEE
Confidence            999999999998

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.43  E-value=0.93  Score=46.22  Aligned_cols=107  Identities=22%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++...|++.|   .++||++.++..+|.+.|+++..-.-.   ..+ ..=.|++..        +..++..+.|......
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~---~s~-~~Is~~V~~--------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT---PSE-TSISLTVDE--------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC---CCC-ceEEEEEeH--------HHHHHHHHHHHHHHHh
Confidence            3567788884   678999999999999999999833221   111 111244431        2233344444433211


Q ss_pred             -C-ceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208          319 -P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  368 (411)
Q Consensus       319 -~-~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~  368 (411)
                       . ..+.+ .+..       ..+.+.|.   ++||++..+.++|++.|+||....
T Consensus       326 ~~~~~i~~-~~~~-------a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~  372 (401)
T TIGR00656       326 AGLDRVEV-EEGL-------AKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG  372 (401)
T ss_pred             cCCceEEE-eCCe-------EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence             1 11111 1211       26778886   799999999999999999998655

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK06291 aspartate kinase; Provisional

Probab=94.36  E-value=0.82  Score=47.68  Aligned_cols=109  Identities=19%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++...|++.+.   +.||+++++..+|.++|++|..-.-+  +....+  .|.+..        +..+...+.|...+..
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~--sse~sI--sf~V~~--------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQG--SSESNI--SLVVDE--------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEec--CCCceE--EEEEeH--------HHHHHHHHHHHHHHHH
Confidence            45678888875   78999999999999999999843321  112112  244442        2223333334333322


Q ss_pred             --CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 --PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 --~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                        ...+++. ..       -..+.+.|.   ++||+..++..+|++.|+||.-..-.
T Consensus       387 ~~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqg  435 (465)
T PRK06291        387 GLVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQG  435 (465)
T ss_pred             hcCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEec
Confidence              1112221 11       126788886   79999999999999999999866533

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.22  E-value=0.54  Score=35.70  Aligned_cols=47  Identities=23%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      +.+..+|+||-|+++...|+++|+||.+-.-.-..+....-.|+|.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            34556899999999999999999999776544323323334566643

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.18  E-value=0.075  Score=54.46  Aligned_cols=62  Identities=13%  Similarity=0.071  Sum_probs=49.4

Q ss_pred             ccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          335 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       335 ~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      .++.+-+.-.|+||++..||.+|+++|+||..+...  ..|+.+     +.+.+-++ ++.++ +++.+++
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~~~-~~~~i~~  398 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYAEE-ALDALKA  398 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCcHH-HHHHHHc
Confidence            456899999999999999999999999999999998  666666     44445555 45556 6777775

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.07  E-value=0.25  Score=54.08  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.. ++.+.-.|.|.-.     +-+.+.++-..|++
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~  731 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ  731 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            456899999999999999999999999999999987643 5666556665322     23455555555443

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=94.05  E-value=0.23  Score=43.88  Aligned_cols=60  Identities=25%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      -+.+.+.|+||.|.+++++++++|.||.-++.+.  ||...+..|.+..-  .+.+.+.++++.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi--~d~e~l~~~lks   65 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI--DDFEKLLERLKS   65 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC--CCHHHHHHHhhc
Confidence            4678899999999999999999999999999976  88756566655532  356666555543

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=93.91  E-value=0.21  Score=50.79  Aligned_cols=64  Identities=14%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      ++-+.-.|+||.|+++-..|+.+|||+.++++.  ..+++.|+ |.|||.- .|..-+++  ..++.+++
T Consensus       299 sl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSR--P~~~~~~~-Y~Ffid~-eg~~~d~~~~~aL~~l~~  364 (386)
T PRK10622        299 TLLMATGQQAGALVEALLVLRNHNLIMTKLESR--PIHGNPWE-EMFYLDV-QANLRSAEMQKALKELGE  364 (386)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEee--ecCCCCce-EEEEEEE-eCCCCCHHHHHHHHHHHH
Confidence            455556799999999999999999999999998  56666664 4499885 56544433  14455544

>PRK06635 aspartate kinase; Reviewed

Probab=93.90  E-value=0.7  Score=47.15  Aligned_cols=110  Identities=19%  Similarity=0.114  Sum_probs=66.2

Q ss_pred             CceEEEEE-eCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208          243 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  321 (411)
Q Consensus       243 ~~tvi~v~-~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  321 (411)
                      +...|++. -.++||++.++..+|.+.|++|.....+. +.++...=.|.+..        +..++..+.|... ...+.
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~-~~~~~~~is~~v~~--------~~~~~a~~~L~~~-~~~~~  330 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV-SEDGKTDITFTVPR--------DDLEKALELLEEV-KDEIG  330 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC-CCCCceeEEEEEcH--------HHHHHHHHHHHHH-HHHcC
Confidence            44556655 36789999999999999999999543221 01101221244431        2333333444331 11111


Q ss_pred             ---EEEeccCCCccccccceEEEEe---CCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          322 ---VTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       322 ---~~i~~~~~~~~~~~~~~~~v~~---~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                         +.+. +.       ...+.+.|   .++||++.++.++|++.|+||.....+
T Consensus       331 ~~~i~~~-~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss  377 (404)
T PRK06635        331 AESVTYD-DD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS  377 (404)
T ss_pred             cceEEEc-CC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec
Confidence               1111 11       12677877   489999999999999999999887643

>PLN02551 aspartokinase

Probab=93.88  E-value=1.1  Score=47.54  Aligned_cols=114  Identities=18%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      .++.+.|+|.+.   +++|++..+...|.++|++|..  |+  +-....  .|.++..  .+...+.+++.-..|...+.
T Consensus       363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Is--sSe~sI--s~~v~~~--~~~~~~~i~~~l~~l~~el~  434 (521)
T PLN02551        363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VA--TSEVSI--SLTLDPS--KLWSRELIQQELDHLVEELE  434 (521)
T ss_pred             CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Ee--ccCCEE--EEEEehh--HhhhhhhHHHHHHHHHHHhh
Confidence            345688899876   6899999999999999999994  44  222222  3566532  11111111111111222333


Q ss_pred             CCceEEEeccCCCccccccceEEEEeC--CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          318 QPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +...+.+. .+       ...+.++|.  .+||+...+-.+|++.||||.-....
T Consensus       435 ~~~~V~v~-~~-------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg  481 (521)
T PLN02551        435 KIAVVNLL-QG-------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG  481 (521)
T ss_pred             cCCeEEEe-CC-------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence            32223221 11       125677765  68999999999999999999887754

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.70  E-value=0.32  Score=53.21  Aligned_cols=66  Identities=12%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      -.+.|.|.+.||+|+|++|+.+++..++||.++...+..++.+.-.|.|.-.     +-+.+.+|-..|+.
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            4568899999999999999999999999999999877444565555555322     23445555444443

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.37  E-value=0.33  Score=46.90  Aligned_cols=64  Identities=14%  Similarity=0.037  Sum_probs=47.2

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      ++-+.-.|+||-|+++-..|+.+|||+.++++.  .-+...|+ |.|||.- .|..-++.  +.++.|++
T Consensus       196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESR--P~k~~~~~-Y~F~iD~-eg~~~~~~v~~AL~el~~  261 (279)
T COG0077         196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESR--PLKTGLGE-YLFFIDI-EGHIDDPLVKEALEELKE  261 (279)
T ss_pred             EEEEEcCCCCchHHHHHHHHHHcCcceeeEeec--ccCCCCee-EEEEEEE-ecCcCcHhHHHHHHHHHh
Confidence            445555599999999999999999999999998  66667764 4488875 45544422  25666654

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.35  E-value=0.54  Score=51.44  Aligned_cols=72  Identities=8%  Similarity=0.118  Sum_probs=50.8

Q ss_pred             EEEecCCC-CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHH
Q 015208          234 VTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSR  311 (411)
Q Consensus       234 V~i~~~~~-~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~  311 (411)
                      |.++.... .....|.|.+.||+|+|.+|+.++++.++||.+....  +.. +.+.-.|-+.     +.+.+++..|...
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~i~~~  687 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE--EKDGRVYSAFIRLT-----ARDRVHLANIMRK  687 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence            44543322 3456889999999999999999999999999988876  343 3434334444     4555677777666


Q ss_pred             H
Q 015208          312 L  312 (411)
Q Consensus       312 L  312 (411)
                      |
T Consensus       688 L  688 (702)
T PRK11092        688 I  688 (702)
T ss_pred             H
Confidence            5

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.98  E-value=0.52  Score=43.69  Aligned_cols=52  Identities=15%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      ..+....+-+.-.|+||.+..++..|.++|+||..+++... .+|.++-+..|
T Consensus       144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            33445566777899999999999999999999999988753 36778777766

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.75  E-value=0.55  Score=48.17  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      .....|.+.-.|+||.++.|+..|+++|+||...+.++ .++.++-+|.+
T Consensus       336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~  384 (409)
T PRK11790        336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV  384 (409)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence            36678888999999999999999999999999998876 77888877766

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.72  E-value=0.54  Score=51.38  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHH
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK  177 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~  177 (411)
                      .-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-.     +-..+.+|-..|+
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~  673 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIK  673 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHh
Confidence            34568999999999999999999999999999999977445655444555222     2344555544444

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.67  E-value=0.59  Score=34.78  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=29.7

Q ss_pred             CCceEEEEEeC----CchhHHHHHHHHHHhCCeEEEEEE
Q 015208          242 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGR  276 (411)
Q Consensus       242 ~~~tvi~v~~~----DRpGLL~~i~~~l~~~g~~i~~a~  276 (411)
                      .++..|+|.|+    |.||+++.++..|++.|++|....
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            46778899988    899999999999999999998444

>PRK11899 prephenate dehydratase; Provisional

Probab=92.67  E-value=0.81  Score=44.43  Aligned_cols=53  Identities=11%  Similarity=0.227  Sum_probs=39.5

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCc
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  298 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~  298 (411)
                      .|.|-+..+|+||.|+++..+|+++|+|+.  +|.+-..+ ....=+||++.+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECCC
Confidence            466666668999999999999999999998  55542333 334446788877753

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.53  E-value=0.7  Score=34.51  Aligned_cols=60  Identities=15%  Similarity=0.211  Sum_probs=41.0

Q ss_pred             EEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          248 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       248 ~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      .+.-+||||=|..+..++.. |.||.+-.-..  .+.....+++.-.    +.++++.+++.++|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~--~~~~~~~v~v~ie----~~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN--QGGDEARVLVGIQ----VPDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc--CCCCceEEEEEEE----eCCHHHHHHHHHHHHH
Confidence            56779999999999999999 99998665542  2222333443321    3346788888888754

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.51  E-value=0.85  Score=49.88  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=46.8

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~~~~~~~~~~l~~~L  312 (411)
                      ..+.|.|.+.||+|+|.+|+.++++.++||.+..+.  +.. +.+.-.|-+.     +.+-+++..|...|
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L  672 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTK--TYGKREAILNITVE-----IKNYKHLLKIMLKI  672 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            456889999999999999999999999999988876  343 3333223333     45556777776665

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=92.47  E-value=1.8  Score=45.01  Aligned_cols=111  Identities=19%  Similarity=0.177  Sum_probs=68.6

Q ss_pred             CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|++.+   .++||+++++..+|+++|++|..-  +  +....+  .|++...  .+.. ..+.++.+.|...+. 
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~--ss~~si--s~~v~~~--~~~~-a~~~~l~~el~~~~~-  375 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P--SGIDDL--SIIIRER--QLTP-KKEDEILAEIKQELN-  375 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c--CCCcEE--EEEEeHH--HhhH-HHHHHHHHHHHHhhC-
Confidence            3457888875   678999999999999999999853  3  122222  2666521  1110 011233333332221 


Q ss_pred             CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 ~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ...+.+. ..       -..+.+.|.   ++||++.++-.+|++.|+||.-....
T Consensus       376 ~~~I~~~-~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~  422 (454)
T PRK09034        376 PDELEIE-HD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG  422 (454)
T ss_pred             CceEEEe-CC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            1112111 11       126778765   78999999999999999999888654

>PRK08210 aspartate kinase I; Reviewed

Probab=92.46  E-value=6.1  Score=40.33  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             CcEEEEEEcCCC-CChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeee
Q 015208           19 DPCVITVNCPDK-TGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYY   97 (411)
Q Consensus        19 ~~~~V~v~~~Dr-~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~   97 (411)
                      +...|+|.+.+. +|.++++...|.++|.||.-...+.+ .   -.|.+..   .+.+...+.|++..   ..       
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~-~---is~~v~~---~~~~~a~~~l~~~~---~~-------  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT-E---VVFTVSD---EDSEKAKEILENLG---LK-------  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc-e---EEEEEcH---HHHHHHHHHHHHhC---Cc-------
Confidence            456777776555 99999999999999999987644422 1   2455552   12233333344321   00       


Q ss_pred             cccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEE
Q 015208           98 RAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEK  139 (411)
Q Consensus        98 ~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~  139 (411)
                           .....+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       333 -----v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 -----PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             -----EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence                 012345678888874   7899999999999999999974

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.29  E-value=1.7  Score=48.73  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|++.|.   ++||++.++..+|.++|++|....-+   .++ ..=.|.+...  .+  ....+.|.+.+...+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe-~sIsf~V~~~--d~--~~av~~L~~~f~~el~~  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSE-YSISFCVPQS--DA--AKAKRALEEEFALELKE  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCC-ceEEEEEeHH--HH--HHHHHHHHHHHHHHhcc
Confidence            56788999875   68999999999999999999744322   111 1212455421  00  01223333333222221


Q ss_pred             -Cc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEe
Q 015208          319 -PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI  369 (411)
Q Consensus       319 -~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~  369 (411)
                       .+ .+++. ..       ...+.+.|.   ++||+...+-.+|++.|+||....-
T Consensus       385 ~~~~~i~~~-~~-------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        385 GLLEPLEVE-EN-------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             CCcceEEEe-CC-------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence             11 12221 11       126778886   7899999999999999999987663

>PRK09181 aspartate kinase; Validated

Probab=92.28  E-value=2.9  Score=43.71  Aligned_cols=107  Identities=16%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|+|.+.   +.+|++.++..+|.++|++|.  .+++  -...+  .|.+..+      ...++++.+.|...+..
T Consensus       327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~s--s~~si--s~~v~~~------~~~~~~~~~~L~~~~~~  394 (475)
T PRK09181        327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKAT--NANTI--THYLWGS------LKTLKRVIAELEKRYPN  394 (475)
T ss_pred             CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEe--cCcEE--EEEEcCC------hHHHHHHHHHHHHhcCC
Confidence            36778888765   789999999999999999998  4442  22222  2555421      12334444444433321


Q ss_pred             CceEEEeccCCCccccccceEEEEeCC--CCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 PLRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 ~~~~~i~~~~~~~~~~~~~~~~v~~~D--RpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                       ..+..  .+.       ..+.++|..  +||+...+-.+|++.||||.....+
T Consensus       395 -~~i~~--~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg  438 (475)
T PRK09181        395 -AEVTV--RKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS  438 (475)
T ss_pred             -ceEEE--CCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence             12221  111       267788764  8999999999999999999877765

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.10  E-value=0.82  Score=49.59  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             EEEEecC-CCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHH
Q 015208          233 SVTIDNS-LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR  311 (411)
Q Consensus       233 ~V~i~~~-~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~  311 (411)
                      .|.++.+ ......-|.|.+.||+|||.+|+++|++.++||......  +..+.+..+.+ +.   .+.+..++..|...
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~-~i---~v~n~~~L~~i~~~  688 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQF-TI---EVKNLNHLGRVLAR  688 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEE-EE---EECcHHHHHHHHHH
Confidence            3445544 345668899999999999999999999999999977765  33455554333 21   14455677777666


Q ss_pred             H
Q 015208          312 L  312 (411)
Q Consensus       312 L  312 (411)
                      |
T Consensus       689 l  689 (701)
T COG0317         689 L  689 (701)
T ss_pred             H
Confidence            5

>PRK09084 aspartate kinase III; Validated

Probab=92.07  E-value=3.6  Score=42.75  Aligned_cols=107  Identities=21%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      .++..+|+|.+.   +.+|++.++..+|.++|++|..  |++  ....+  .|.+..+.  .. ......+.+.+...+.
T Consensus       303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~s--se~sI--s~~i~~~~--~~-~~~~~~~~~~l~~el~  373 (448)
T PRK09084        303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITT--SEVSV--SLTLDTTG--ST-STGDTLLTQALLTELS  373 (448)
T ss_pred             eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eec--cCcEE--EEEEechh--hh-hhhhHHHHHHHHHHHh
Confidence            346678899865   6899999999999999999984  332  12222  35554221  11 0111223233333343


Q ss_pred             CCceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeE
Q 015208          318 QPLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI  364 (411)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I  364 (411)
                      ....+.+. .+       -..+.+.|.   ++||+...+-.+|++.++.+
T Consensus       374 ~~~~i~~~-~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~  415 (448)
T PRK09084        374 QLCRVEVE-EG-------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM  415 (448)
T ss_pred             cCCeEEEE-CC-------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence            32223221 11       126888887   79999999999998865544

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.06  E-value=1.2  Score=33.16  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             EEEecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208          113 KLSCYDRKGLLYDVTAVLCELELTIEKVKI  142 (411)
Q Consensus       113 ~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I  142 (411)
                      .|.-+||||-|.+++..++. |.||...+-
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~   30 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHY   30 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEE
Confidence            56779999999999999999 999976544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=92.04  E-value=0.38  Score=46.85  Aligned_cols=63  Identities=11%  Similarity=-0.035  Sum_probs=44.3

Q ss_pred             EEEEe-CCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          339 VELSG-KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       339 ~~v~~-~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      +-+.- .++||-|+++-..|+++|||+.++++.  ...++.|+ |.|||.- .|..-+++  +.++.+++
T Consensus       199 lif~l~~~~pGsL~~~L~~F~~~~INLt~IeSR--P~~~~~~~-y~F~vd~-eg~~~~~~~~~al~~L~~  264 (283)
T PRK11898        199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESR--PTKTGLGT-YFFFIDV-EGHIDDVLVAEALKELEA  264 (283)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHCCCCeeeEecc--cCCCCCcc-EEEEEEE-EccCCCHHHHHHHHHHHH
Confidence            33443 357999999999999999999999998  54455564 5699985 56544333  24555544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.81  E-value=0.79  Score=34.10  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=35.1

Q ss_pred             CceEEEEEEec----CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          107 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       107 ~~~t~i~v~~~----Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      .+...|+|.++    |.||+++++++.|++.|+||....  | ..   -|.|.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S-~~---~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S-EI---SISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E-SS---EEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E-ee---eEEEEEeH
Confidence            45678889888    799999999999999999997555  5 32   25666643

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.74  E-value=1.3  Score=33.71  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  157 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~  157 (411)
                      +.+..+|+||-|+++...|+.+|+|+..-.-....+....=.|||.
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd   48 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD   48 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE
Confidence            4455689999999999999999999965444332333334457674

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK06291 aspartate kinase; Provisional

Probab=91.71  E-value=7.9  Score=40.39  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=70.8

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      +...|++.+.   +.+|+++++.+.|.++|+||.--...+...  --.|.|...   +.+...+.|.+.+.....     
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~---d~~~av~~L~~~~~~~~~-----  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEA---DLEKALKALRREFGEGLV-----  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHH---HHHHHHHHHHHHHHHhcC-----
Confidence            4567788765   689999999999999999998644333332  134555531   122222334443321100     


Q ss_pred             eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                       .    .-....+...|.|++.   +++|+.+++..+|++.|+||......+
T Consensus       390 -~----~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        390 -R----DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS  436 (465)
T ss_pred             -c----ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence             0    0112345678888885   689999999999999999997444333

>TIGR00657 asp_kinases aspartate kinase

Probab=91.58  E-value=5.5  Score=41.18  Aligned_cols=109  Identities=23%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCceEEEEEeCCc--hhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc-C
Q 015208          242 PGHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-Q  318 (411)
Q Consensus       242 ~~~tvi~v~~~DR--pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~-~  318 (411)
                      ++...|++.+.+-  +|++.++..+|.++|++|....-.  +-...+  .|.++.        +..++..+.|..... .
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~--~se~sI--s~~I~~--------~~~~~a~~~L~~~~~~~  367 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQS--SSETSI--SFTVDK--------EDADQAKTLLKSELNLS  367 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec--CCCceE--EEEEEH--------HHHHHHHHHHHHHHHhc
Confidence            3567788876443  799999999999999999844311  111111  244442        122222233322111 1


Q ss_pred             Cc-eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 ~~-~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      .. .+.+. +.       -..+.+.|.   ++||++.++...|++.|+||.....+
T Consensus       368 ~~~~I~~~-~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~s  415 (441)
T TIGR00657       368 ALSSVEVE-KG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISSS  415 (441)
T ss_pred             CcceEEEc-CC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEec
Confidence            11 12111 11       126777765   78999999999999999999888743

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06382 threonine dehydratase; Provisional

Probab=91.55  E-value=1.3  Score=45.27  Aligned_cols=69  Identities=17%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE----eCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~----T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      .....+.+.|.-+|+||-|.+++..|.++|+||.+....    ....+...-+|.|...     +++..+.|.+.|++
T Consensus       326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            355678999999999999999999999999999876654    2234556666766443     23334455555444

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.34  E-value=0.66  Score=41.03  Aligned_cols=49  Identities=16%  Similarity=0.373  Sum_probs=37.9

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCC
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG  296 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g  296 (411)
                      -+.+.+.++||.|.+++-.++++|.||.++.-.....|+.+.  .|...+|
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~--iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKAL--IYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEE--EEEEeeC
Confidence            467889999999999999999999999999876433454444  4665443

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=91.21  E-value=1.2  Score=43.15  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecC-ceEEEEEEEecCCCc
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK  298 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g-~~~~d~F~v~~~g~~  298 (411)
                      ..|.|-+..+|+||-|+++...|+.+|+|..  +|.+-..+ .-..=+||++.+|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence            4677778888999999999999999999998  55532333 334446788877765

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=91.02  E-value=0.36  Score=51.13  Aligned_cols=60  Identities=22%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      +-+.-.||||++..|+.+|.+++|||..+.+.|...|+.+  .   ++... ..++..+ +++.+++
T Consensus       454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~a--l---~~i~~-D~~v~~~-~l~~i~~  513 (525)
T TIGR01327       454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEA--L---MLLSL-DQPVPDE-VLEEIKA  513 (525)
T ss_pred             EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeE--E---EEEEc-CCCCCHH-HHHHHhc
Confidence            3355579999999999999999999999999976777777  3   33333 3356666 7777775

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK09034 aspartate kinase; Reviewed

Probab=91.00  E-value=9.8  Score=39.60  Aligned_cols=106  Identities=12%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             cEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccH--HHHHHHHHhhCCCCCCccee
Q 015208           20 PCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRW--GLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        20 ~~~V~v~~---~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~--~~l~~~L~~~l~~~~~~~~~   94 (411)
                      .+.|++.+   ++++|+++++...|+++|.||.--  ++..  .--.|.|...+-.+.  ..+.+.|+..+.. .     
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~--~sis~~v~~~~~~~a~~~~l~~el~~~~~~-~-----  377 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGI--DDLSIIIRERQLTPKKEDEILAEIKQELNP-D-----  377 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCC--cEEEEEEeHHHhhHHHHHHHHHHHHHhhCC-c-----
Confidence            45666664   678999999999999999998863  2222  224566664321111  2233333322210 0     


Q ss_pred             eeecccccCCCCCceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEE
Q 015208           95 LYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI  142 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I  142 (411)
                             .-....+...|.+++   .+.||+++++..+|+++|+||.....
T Consensus       378 -------~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        378 -------ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             -------eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence                   012234677888876   47899999999999999999975543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.58  E-value=0.54  Score=49.85  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      +-+.-.|+||++..|+.+|.+++|||..+.+.|...|+.+  .   .+... ..+++.+ +++.+++
T Consensus       455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~a--l---~~i~~-D~~v~~~-~l~~i~~  514 (526)
T PRK13581        455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEA--L---MVLSV-DDPVPEE-VLEELRA  514 (526)
T ss_pred             EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeE--E---EEEEC-CCCCCHH-HHHHHhc
Confidence            3345579999999999999999999999999875666777  3   33322 3466677 7887775

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=89.95  E-value=1.3  Score=33.89  Aligned_cols=47  Identities=15%  Similarity=0.125  Sum_probs=34.1

Q ss_pred             EEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       112 i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      +.+..+|+||-|+++...|+.+|+|+..-.-....+....-.|||.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            44556899999999999999999999655544333444445677743

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.64  E-value=0.71  Score=46.67  Aligned_cols=51  Identities=8%  Similarity=-0.020  Sum_probs=39.5

Q ss_pred             ccceEEEEeC-CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCC
Q 015208          335 VANPVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD  390 (411)
Q Consensus       335 ~~~~~~v~~~-DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~  390 (411)
                      ..+.+-+.=. |+||.|++|+.+|+++||||.++++.    ..+.|+.. ||+.-..
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~y~-f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGELH-FRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCceEE-EEEEEec
Confidence            3445556565 99999999999999999999999984    23456566 8888643

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=89.38  E-value=0.85  Score=47.01  Aligned_cols=66  Identities=12%  Similarity=-0.046  Sum_probs=47.6

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      .+|-+.-.|+||-|+++-..|+++|||+.++++.  ......|+.+.|||.- .|..-..+++++.+++
T Consensus        32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESR--Psk~~~~e~Y~FfVD~-Eg~~~~l~~aL~~Lk~   97 (464)
T TIGR01270        32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESR--DSKDGTSKTMDVLVDV-ELFHYGLQEAMDLLKS   97 (464)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECC--cCCCCCCccEEEEEEE-EcCHHHHHHHHHHHHH
Confidence            3566666899999999999999999999999998  4444555547788885 4443222225666655

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PLN02551 aspartokinase

Probab=89.36  E-value=10  Score=40.15  Aligned_cols=113  Identities=11%  Similarity=0.037  Sum_probs=69.4

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      +.+.|+|.+.   +.+|+++++...|.++|++|.--  ++..  .--.|.+....-...+.+++.+.+.+.....     
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~-----  435 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWSRELIQQELDHLVEELEK-----  435 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhc-----
Confidence            4567777655   68999999999999999999854  2222  2235666543311222233333222111000     


Q ss_pred             eecccccCCCCCceEEEEEEec--CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCY--DRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~--Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                      +..    -....+...|.|++.  ..+|+++++..+|+..|+||......+
T Consensus       436 ~~~----V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        436 IAV----VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             CCe----EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence            000    112346778888864  678999999999999999997554433

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.12  E-value=4.1  Score=31.83  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEE
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVK  141 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~  141 (411)
                      ++.+.-+|+||=|++++.+|+  +.||....
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~   31 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFN   31 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEE
Confidence            467788999999999999999  56665433

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09181 aspartate kinase; Validated

Probab=89.11  E-value=19  Score=37.77  Aligned_cols=105  Identities=14%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             CcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      +.+.|+|.+.   +.+|+.+++.+.|.++|+||.  -+.+..  .-..|.|... ....+.+.+.|++.+...       
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~-~~~~~~~~~~L~~~~~~~-------  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS-LKTLKRVIAELEKRYPNA-------  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC-hHHHHHHHHHHHHhcCCc-------
Confidence            4566777544   689999999999999999997  233322  2245666543 112344444455433210       


Q ss_pred             eecccccCCCCCceEEEEEEecC--cccHHHHHHHHHHhCCceEEEEEE
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCYD--RKGLLYDVTAVLCELELTIEKVKI  142 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~D--r~GLl~~i~~~L~~~glnI~~A~I  142 (411)
                          .+  .. .+...|.+++..  +||+.+++..+|++.|+||..-..
T Consensus       396 ----~i--~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        396 ----EV--TV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             ----eE--EE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence                01  12 567888988855  899999999999999999975443

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=88.98  E-value=0.64  Score=43.78  Aligned_cols=48  Identities=15%  Similarity=0.094  Sum_probs=38.6

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEE
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD  387 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~  387 (411)
                      ...+.+--.|-||+++.|+-+|+..|+||.++-+.  ..-.++  ..+|-+.
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc--~tevk~--LsrmTIV  124 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC--LTEVKA--LSRMTIV  124 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeee--chhhhh--hhhceEE
Confidence            34788888999999999999999999999999998  444555  4444444

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=88.65  E-value=2.2  Score=46.37  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=38.1

Q ss_pred             CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeE
Q 015208          105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV  150 (411)
Q Consensus       105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~  150 (411)
                      ...-.+.|.|.+.||+|+|++|+.+|+..+.||.+....+. ++.+
T Consensus       623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~  667 (701)
T COG0317         623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQF  667 (701)
T ss_pred             CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCce
Confidence            34567899999999999999999999999999999888774 3443

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=88.44  E-value=1.7  Score=38.47  Aligned_cols=67  Identities=18%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHc
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG  181 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~  181 (411)
                      -.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+......-+-.|...     ++..++++.+.|.+..+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence            45777889999999999999999999999988875454432222222222     23456778777777664

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=87.97  E-value=30  Score=38.87  Aligned_cols=110  Identities=14%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208          107 SDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       107 ~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~  183 (411)
                      .+.+.|+|.+.   ++||+++++...|+++|++|......+  ++. --.|.|..        +..++....|.+.+..+
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~-sIsf~V~~--------~d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEY-SISFCVPQ--------SDAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCc-eEEEEEeH--------HHHHHHHHHHHHHHHHH
Confidence            45678888864   678999999999999999997554433  221 12455532        22233333344433210


Q ss_pred             ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHH
Q 015208          184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYD  260 (411)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~  260 (411)
                      .                      ..   +                 ....|++.    ++..+|++.|.   ++||++..
T Consensus       382 l----------------------~~---~-----------------~~~~i~~~----~~valIsvvG~gm~~~~gv~ar  415 (819)
T PRK09436        382 L----------------------KE---G-----------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAAK  415 (819)
T ss_pred             h----------------------cc---C-----------------CcceEEEe----CCEEEEEEEccCcccCcCHHHH
Confidence            0                      00   0                 01124432    35678888886   78999999


Q ss_pred             HHHHHHhCCeEEE
Q 015208          261 IMRTLKDYNIQVS  273 (411)
Q Consensus       261 i~~~l~~~g~~i~  273 (411)
                      +..+|.+.|+||.
T Consensus       416 if~aL~~~~InI~  428 (819)
T PRK09436        416 FFSALGRANINIV  428 (819)
T ss_pred             HHHHHHHCCCCEE
Confidence            9999999999998

>PRK06382 threonine dehydratase; Provisional

Probab=87.95  E-value=2.5  Score=43.21  Aligned_cols=64  Identities=22%  Similarity=0.185  Sum_probs=46.4

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE----E--cCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS----T--DGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~----t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      ..+.+.|.-+|+||.|++++.+|.++|.||.+-...    .  .+. ..-+|.|....-...+.+.+.|++
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~-~~v~i~vet~~~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGF-QSVTFTVNVRGQDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCc-EEEEEEEEeCCHHHHHHHHHHHHH
Confidence            457899999999999999999999999999977664    2  344 456677764321233356566655

>PRK12483 threonine dehydratase; Reviewed

Probab=87.93  E-value=27  Score=37.08  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCC-ccH-HHHHHHHHhhCCCCCCc----
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQ-TRW-GLLKKRLMGACPSCSSA----   91 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g-~~~-~~l~~~L~~~l~~~~~~----   91 (411)
                      ....+.|.-+||||-|.+++.+|...  ||.+-.-.. ..... .++....-.+ ... +.+.+.|++.--...+.    
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne  420 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE  420 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence            34678899999999999999999988  888765543 22212 3333332222 233 45656665431110000    


Q ss_pred             ceeeeeccccc--CCCCCceEEEEEEecCcccHHHHHHHHHHh-CCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhH
Q 015208           92 SVVLYYRAEMQ--APKPSDVFLLKLSCYDRKGLLYDVTAVLCE-LELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKR  168 (411)
Q Consensus        92 ~~~~~~~~~~~--~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~-~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~  168 (411)
                      ..+.+.+.-+.  ......--.+.+.=|.|||=|.+++..|.. .++.-.+=+......++++--|.+  +      +++
T Consensus       421 ~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~--~------~~~  492 (521)
T PRK12483        421 LAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQV--P------EDE  492 (521)
T ss_pred             HHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEee--C------hhH
Confidence            00111111111  112334456777789999999999999996 355554444332223344433444  1      133


Q ss_pred             HHHHHHHHHH
Q 015208          169 KEDTYEHLKT  178 (411)
Q Consensus       169 ~~~l~~~L~~  178 (411)
                      .+.+.+.|.+
T Consensus       493 ~~~~~~~l~~  502 (521)
T PRK12483        493 RAALDAALAA  502 (521)
T ss_pred             HHHHHHHHHH
Confidence            4556555544

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=87.64  E-value=1.7  Score=44.64  Aligned_cols=65  Identities=12%  Similarity=0.033  Sum_probs=46.8

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCC-CChhhHHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLS-VPRNKIEEGVWKL  406 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~-~~~~~~~~~~~~~  406 (411)
                      ++-+.-.|+||-|.++-.+|+++|||+.++++.  ......| -+.|||.- .|.. ...+++++.+++.
T Consensus        18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESR--Psk~~~~-eY~FFVD~-eg~~~~~v~~aL~~Lk~~   83 (436)
T TIGR01268        18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESR--PSKTHPG-EYEFFVEF-DEASDRKLEGVIEHLRQK   83 (436)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecc--cCCCCCc-cEEEEEEE-ecCccHHHHHHHHHHHHh
Confidence            555666899999999999999999999999998  4444445 45689885 4543 1122366766654

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=87.54  E-value=17  Score=32.30  Aligned_cols=68  Identities=9%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      -++.+.-.|.||.|..++..|+..|+||.+-.+.- |.-....-+-++. .|    |+...+++.+.|...+..
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTivv-~g----~~~~~EQi~kQL~kLidV   72 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIVV-SG----DEQVLEQIIKQLNKLIDV   72 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEEE-cC----CcchHHHHHHHHHhhccc
Confidence            46778889999999999999999999999877763 3333333222332 22    245788898888766654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.26  E-value=4.6  Score=31.57  Aligned_cols=61  Identities=7%  Similarity=0.046  Sum_probs=37.7

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCC-HHHHHHHHHHHHH
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD-PSKQNGLSSRLWM  314 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~-~~~~~~l~~~L~~  314 (411)
                      ++.+.=+||||=|..++.+|.  +.||.+..-... ..+...-.+.+.     +.+ ++..+++.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~~~~v~i~ie-----~~~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEKDAHIFVGVS-----VANGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCCeeEEEEEEE-----eCCcHHHHHHHHHHHHH
Confidence            678888999999999999999  455553333311 112222122333     334 5677888887744

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=87.23  E-value=39  Score=34.88  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             CceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208          243 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG  275 (411)
Q Consensus       243 ~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a  275 (411)
                      +.++|++.|.   ++||+++++..+|++.|+||..-
T Consensus       377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i  412 (441)
T TIGR00657       377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI  412 (441)
T ss_pred             CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence            5677888664   78999999999999999999733

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.96  E-value=1.1  Score=42.14  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEE--EEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD--LFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d--~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..-+|.+...|-||.+++|+++|+..|+||.+.-+.-+. .+++-  +..+.-.      +.-+++.++.|++..
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~te-vk~LsrmTIVl~Gt------d~VveQa~rQiedlV  143 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTE-VKALSRMTIVLQGT------DGVVEQARRQIEDLV  143 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechh-hhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence            456788889999999999999999999999998886423 33333  3333322      223455555555544

>PLN02317 arogenate dehydratase

Probab=86.24  E-value=2.8  Score=42.40  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=41.9

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCc-------------ceeeEEEEEEEcCCCCCCChh
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD-------------REWEVYRVLLDEGDGLSVPRN  397 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~-------------~~~~~~~f~v~~~~g~~~~~~  397 (411)
                      .++-+.-.|+||.|+++-.+|+.+|||+.++++. |..+.             +.|+ |.|||.- .|..-+.+
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESR-P~~~~~~~~~~~~~~~~~~~~e-Y~FyVD~-eg~~~d~~  354 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESR-PQRKRPLRVVDDSNSGTAKYFD-YLFYVDF-EASMADPR  354 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEee-ecCCCCcccccccccccccccc-EEEEEEE-EcCcCCHH
Confidence            3455556789999999999999999999999986 33332             1454 6699885 45444433

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=85.59  E-value=8.7  Score=29.33  Aligned_cols=56  Identities=16%  Similarity=0.171  Sum_probs=36.1

Q ss_pred             CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          252 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       252 ~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      .+.||+++++..+|+++|+++.  .|+  +....+  .|.+.....++.+ +.+++|.+.|..
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vD--mI~--~s~~~i--sftv~~~~~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVD--LVS--TSETNV--TVSLDPDPNGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEE--EEE--eCCCEE--EEEEeCcccccch-HHHHHHHHHHHh
Confidence            5889999999999999999999  454  222222  2455433222443 356677777644

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=85.43  E-value=3.2  Score=34.75  Aligned_cols=49  Identities=14%  Similarity=0.012  Sum_probs=34.6

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  157 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~  157 (411)
                      .+.+.+..+|+||-|+++...|+.+|+|+.+-.-....+....-.|||.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId   89 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR   89 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence            4666677799999999999999999999965444332223223356663

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.24  E-value=7.4  Score=39.31  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=45.0

Q ss_pred             CCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE---eC-CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          106 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS---TT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       106 ~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~---T~-~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      ......+.|.-+|+||.|++++..++++|.||.+..-.   .. ..+.+.-.+.|...     +++..+.|.+.|++
T Consensus       302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            44556899999999999999999999999999876433   11 23455444555332     23444555555443

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=85.12  E-value=17  Score=40.63  Aligned_cols=108  Identities=15%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             CCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|++.+.   +.||.+.++..+|.++|+++..-..+   ..+ ..=.|.++.        +..+.+.+.|... ..
T Consensus       315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~---~s~-~sis~~i~~--------~~~~~~~~~l~~~-~~  381 (810)
T PRK09466        315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH---PDR-QLLQLAYTS--------EVADSALKLLDDA-AL  381 (810)
T ss_pred             CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec---CCC-cEEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence            45678888876   88999999999999999999844322   122 121233331        1233444444322 12


Q ss_pred             CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 ~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ...+.+. ++       ...+.++|.   .+||+...+-.+|++.++++.....+
T Consensus       382 ~~~i~v~-~~-------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s  428 (810)
T PRK09466        382 PGELKLR-EG-------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSED  428 (810)
T ss_pred             CCcEEEe-CC-------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCC
Confidence            2222221 11       226888886   68999999999999999999766544

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=84.74  E-value=1.6  Score=38.40  Aligned_cols=35  Identities=17%  Similarity=0.040  Sum_probs=29.2

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDV   53 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i   53 (411)
                      +..+|..-.++.||+++.+++.++++||+|..+-.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            44566666788999999999999999999997544

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=84.70  E-value=2.6  Score=42.57  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecc
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  371 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~  371 (411)
                      .+.|.-.||||.|.+++..++++|.||.+..-.|
T Consensus       307 ~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r  340 (380)
T TIGR01127       307 RIETVLPDRPGALYHLLESIAEARANIVKIDHDR  340 (380)
T ss_pred             EEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeec
Confidence            7888999999999999999999999999997664

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=84.52  E-value=10  Score=27.78  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             ecCcccHHHHHHHHHHhCCceEEEEEE
Q 015208          116 CYDRKGLLYDVTAVLCELELTIEKVKI  142 (411)
Q Consensus       116 ~~Dr~GLl~~i~~~L~~~glnI~~A~I  142 (411)
                      .+|.+|.++++...|++.|++|.....
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            378999999999999999999975543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=84.48  E-value=2.6  Score=44.68  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=39.5

Q ss_pred             CCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          106 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       106 ~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      .+....+-+.-.|+||.+..++..|.++++||...++.-. .++.++-++.+
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            3345556667799999999999999999999988887632 35677766665

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=84.28  E-value=56  Score=34.00  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             CCcEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCccee
Q 015208           18 GDPCVITVNCPD---KTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        18 ~~~~~V~v~~~D---r~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~   94 (411)
                      .+...|+|.++.   ++|..+++.+.|.++|+|+.---...+..+  ..|.|....   .....+.|++.......    
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~---~~~a~~~l~~~~~~~~~----  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESD---APRALRALLEEKLELLA----  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhh---HHHHHHHHHHHHhhhcc----
Confidence            356667666543   459999999999999999974333322321  566666422   22333334443321110    


Q ss_pred             eeecccccCCCCCceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 015208           95 LYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVK  141 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~  141 (411)
                             .-....+.-.|.+++   ...||..+++..+|++.|+||....
T Consensus       376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence                   012234567788887   4578999999999999999997554

>PRK08198 threonine dehydratase; Provisional

Probab=84.27  E-value=8.7  Score=39.18  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=34.1

Q ss_pred             CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEE
Q 015208          105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS  143 (411)
Q Consensus       105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~  143 (411)
                      .......+.|.-+|+||-|+++...++++|.||.+....
T Consensus       323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            345667999999999999999999999999999877654

>PRK06545 prephenate dehydrogenase; Validated

Probab=84.03  E-value=3  Score=41.93  Aligned_cols=39  Identities=21%  Similarity=0.162  Sum_probs=35.7

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE
Q 015208           17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST   55 (411)
Q Consensus        17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t   55 (411)
                      -.....|.|.-+|+||-++++++.|...|+||.+-+|..
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            346789999999999999999999999999999999954

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=83.90  E-value=5.3  Score=27.88  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             ecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          116 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       116 ~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      .+|.+|.++++.+.|+++|++|.........+|...-.|.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v   48 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV   48 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence            48889999999999999999997655432123333335655

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=83.61  E-value=3.4  Score=41.53  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEE
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  278 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~  278 (411)
                      +.++.+.|.-+||||-+..++..|.+.|+||.+-+|.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~  324 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL  324 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence            4678889999999999999999999999999999986

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=83.24  E-value=5.7  Score=40.46  Aligned_cols=51  Identities=16%  Similarity=0.209  Sum_probs=38.0

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      ..|.+-+..+|+||.|+++...|+.+|+|+..-.-.-..++...=.|||.-
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~  346 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV  346 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence            356666777899999999999999999999655544334444555687743

>PRK06349 homoserine dehydrogenase; Provisional

Probab=82.53  E-value=6.1  Score=40.72  Aligned_cols=52  Identities=23%  Similarity=0.430  Sum_probs=39.7

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcC
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT  159 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~  159 (411)
                      ...+-|.+...|+||.|++|++.|.++++||.+...... ++....++++++.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~  397 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE  397 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe
Confidence            456788899999999999999999999999987765442 2334456666654

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=82.18  E-value=17  Score=41.08  Aligned_cols=108  Identities=18%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             CCCceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          241 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       241 ~~~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      .++.++|++.+.   +.+|++.++...|+++|++|.  -|+  +....+  .|.+........ .+.++.+...|.    
T Consensus       319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd--~I~--sse~si--s~~i~~~~~~~~-~~~~~~l~~~l~----  387 (861)
T PRK08961        319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVD--LIS--SSETNV--TVSLDPSENLVN-TDVLAALSADLS----  387 (861)
T ss_pred             ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEE--EEE--cCCCEE--EEEEccccccch-HHHHHHHHHHHh----
Confidence            345678888654   689999999999999999998  444  222222  244442211111 123344444432    


Q ss_pred             CCceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEE
Q 015208          318 QPLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSA  367 (411)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~  367 (411)
                      ..-.+.+. ..       -..|.++|.   .+||+...+-.+|++.+|++..-
T Consensus       388 ~~~~i~~~-~~-------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~  432 (861)
T PRK08961        388 QICRVKII-VP-------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQ  432 (861)
T ss_pred             hcCcEEEe-CC-------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEEC
Confidence            21123221 11       127889996   89999999999999988766433

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=82.16  E-value=16  Score=26.27  Aligned_cols=30  Identities=13%  Similarity=0.305  Sum_probs=25.4

Q ss_pred             eEEEEEe---CCchhHHHHHHHHHHhCCeEEEE
Q 015208          245 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY  274 (411)
Q Consensus       245 tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~  274 (411)
                      .+|++.|   .+.||+++++.++|.+.|+++..
T Consensus         2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~   34 (66)
T cd04922           2 SILALVGDGMAGTPGVAATFFSALAKANVNIRA   34 (66)
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence            3566666   48899999999999999999973

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>PLN02550 threonine dehydratase

Probab=81.99  E-value=61  Score=34.96  Aligned_cols=145  Identities=14%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcc-----
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSAS-----   92 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~-----   92 (411)
                      ...+.|.-+||||-|.+++.+|...  ||.+-.-.. +.... -++....-.+ ...+.+.+.|++.--...+..     
T Consensus       417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~~~~~~i~~~l~~~g~~~~~l~~~~~~  493 (591)
T PLN02550        417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVHTEQELQALKKRMESAQLRTVNLTSNDLV  493 (591)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeCCHHHHHHHHHHHHHCCCCeEeCCCChHH
Confidence            3678899999999999999999986  888766543 21212 2222222222 234455555555321111110     


Q ss_pred             ---eeeeecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhC-CceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhH
Q 015208           93 ---VVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCEL-ELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKR  168 (411)
Q Consensus        93 ---~~~~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~-glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~  168 (411)
                         .+++. ..  ......--.+.+.=|.|||-|.+++.+|... ++.-.+=+.....+++++--|.+.        +++
T Consensus       494 ~~~LR~v~-g~--ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--------~~e  562 (591)
T PLN02550        494 KDHLRYLM-GG--RAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--------PEE  562 (591)
T ss_pred             hhhhhhee-cc--ccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--------HHH
Confidence               01111 00  0011334567777899999999999988852 444443332221233444444441        234


Q ss_pred             HHHHHHHHHH
Q 015208          169 KEDTYEHLKT  178 (411)
Q Consensus       169 ~~~l~~~L~~  178 (411)
                      .+.+.+.|.+
T Consensus       563 ~~~l~~~l~~  572 (591)
T PLN02550        563 MQEFKSRANA  572 (591)
T ss_pred             HHHHHHHHHH
Confidence            4556555544

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=80.96  E-value=13  Score=28.32  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             EEEEEE---ecCcccHHHHHHHHHHhCCceEEEE
Q 015208          110 FLLKLS---CYDRKGLLYDVTAVLCELELTIEKV  140 (411)
Q Consensus       110 t~i~v~---~~Dr~GLl~~i~~~L~~~glnI~~A  140 (411)
                      +.|+|.   .++.||++++|...|+++|+||..-
T Consensus         2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI   35 (75)
T cd04932           2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI   35 (75)
T ss_pred             EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence            356662   4788999999999999999999643

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08841 aspartate kinase; Validated

Probab=80.22  E-value=17  Score=37.18  Aligned_cols=97  Identities=9%  Similarity=0.049  Sum_probs=61.4

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  321 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  321 (411)
                      ++.+.|++.+    +.+..+...|.++|+++..  ++  +....+  .|++.        ....++++.    .+...  
T Consensus       256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~--~~~~~~--~~~v~--------~~~~~~~~~----~~~~~--  311 (392)
T PRK08841        256 RDLALIEVES----ESLPSLTKQCQMLGIEVWN--VI--EEADRA--QIVIK--------QDACAKLKL----VFDDK--  311 (392)
T ss_pred             CCeEEEEecc----chHHHHHHHHHHcCCCEEE--EE--ecCCcE--EEEEC--------HHHHHHHHH----hCccc--
Confidence            4566777755    3578999999999999883  33  222222  24543        122333322    12111  


Q ss_pred             EEEeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          322 VTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       322 ~~i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+. ..       -..+.+.|...||+...+..+|++.|+||.....+
T Consensus       312 i~~~-~~-------~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s  352 (392)
T PRK08841        312 IRNS-ES-------VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE  352 (392)
T ss_pred             EEEe-CC-------EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC
Confidence            2111 11       12688999999999999999999999999666544

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=80.14  E-value=17  Score=27.76  Aligned_cols=56  Identities=16%  Similarity=0.168  Sum_probs=36.1

Q ss_pred             cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          117 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       117 ~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      ++.+|+++++.++|+++|+||...  .+ ..  .--.|.|..... ..+.+.++.|.+.|++
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~--~~isftv~~~~~-~~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SE--TNVTVSLDPDPN-GLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEE--Ee-CC--CEEEEEEeCccc-ccchHHHHHHHHHHHh
Confidence            678999999999999999999654  33 22  223455544331 1233456667666665

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.13  E-value=3.7  Score=43.52  Aligned_cols=50  Identities=16%  Similarity=0.333  Sum_probs=39.0

Q ss_pred             CceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          107 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       107 ~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      .+...+-+.-.|+||.+..++..|.++++||..+++.-. .++.++-++.+
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~  499 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL  499 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence            344455566799999999999999999999988887632 35777766666

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
1u8s_A	192	Glycine cleavage system transcriptional repressor,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2nyi_A	195	Unknown protein; protein structure initiative, PSI	1e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-04

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 57.4 bits (138), Expect = 7e-10
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 22  VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIG--DSQTRWGLLKK 79
           VIT    D+ G+  ++ R++   G +I+   ++  GK   ++  + G   + TR     +
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRV----E 63

Query: 80  RLMGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEK 139
             +           ++   +       +    + +   D+ GL    T    + ++ +  
Sbjct: 64  TTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMAS 123

Query: 140 VKISTTPDGKVM---DLFFVT 157
           +   T    K+    + F + 
Sbjct: 124 LSAQTISKDKLHSEQNQFHIA 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 60/395 (15%), Positives = 110/395 (27%), Gaps = 120/395 (30%)

Query: 82  MGAC-PSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKG--------LLYDVTAVLCE 132
           +     +  +  V L Y+  +Q      +F L L   +           LLY +      
Sbjct: 158 VLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 133 -------LELTIEKVK------ISTTP------------DGKVMDLF------FVTDTRE 161
                  ++L I  ++      + + P            + K  + F       +T TR 
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRF 274

Query: 162 LLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE 221
              T      T  H+              M  T      +  S L    +D    D+P E
Sbjct: 275 KQVTDFLSAATTTHISLD--------HHSMTLTP----DEVKSLL-LKYLDCRPQDLPRE 321

Query: 222 LPSGS-LTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR 280
           + + +    S ++ +I + L+       + C     ++   +  L+    +  +      
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------ 375

Query: 281 QRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVE 340
                   L +       I  P+    L S +W ++     +         +L   + VE
Sbjct: 376 ------DRLSVFPPS-AHI--PTI---LLSLIWFDV-----IKSDVMVVVNKLHKYSLVE 418

Query: 341 LSGKGRPLVFHDITLALKM-------------------------------LDICIFSAEI 369
              K   +    I L LK+                               LD   +S  I
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HI 477

Query: 370 GRHMIG---DREWEVYR-VLLDEGDGLSVPRNKIE 400
           G H+          ++R V LD          KI 
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLD----FRFLEQKIR 508

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 22  VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRL 81
           V++V   D+ G+  D    +     ++    ++  G    ++  V  +++    L++  L
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKD-GKLIQSAL 65

Query: 82  MGACPSCSSASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVK 141
             A P    ++      AE      +  + L +   D +G++  VTAVL +    I +++
Sbjct: 66  ESALPGFQISTRRASSVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELE 125

Query: 142 ISTTPDGKVMDLFFV 156
             T P        F 
Sbjct: 126 TETLPAPFAGFTLFR 140

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 112 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDL-FFVTDTREL 162
           +++   D+ G+   +T V+ + +  I  + +    DG    +L  FV +T +L
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVL-NAKDGIFTCNLMIFVKNTDKL 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.76
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.72
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.64
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.02
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.99
2f06_A	144	Conserved hypothetical protein; structural genomic	98.41
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.25
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.23
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.15
2f06_A	144	Conserved hypothetical protein; structural genomic	98.04
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.83
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.82
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.82
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.77
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.71
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.71
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.65
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.65
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.65
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.62
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.61
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.57
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.5
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.4
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.36
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.31
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.19
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.16
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.16
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.09
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.97
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.91
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.79
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.49
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.38
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.31
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.27
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.25
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.13
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.93
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.85
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.81
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.71
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.47
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.4
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.04
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.35
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	94.0
3luy_A	329	Probable chorismate mutase; structural genomics, A	93.86
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.79
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.69
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.54
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.53
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.54
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	91.47
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	91.27
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	90.77
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.69
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	90.38
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.12
3luy_A	329	Probable chorismate mutase; structural genomics, A	89.69
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.52
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	87.56
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	84.38
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	83.63
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	83.3
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	83.02
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	80.77

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.76  E-value=3.4e-18  Score=155.82  Aligned_cols=156  Identities=18%  Similarity=0.177  Sum_probs=108.6

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCc---cHHHHHHHHHhhCCCCCCccee
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQT---RWGLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~---~~~~l~~~L~~~l~~~~~~~~~   94 (411)
                      ..++|+|+|+||||||++|+++|+++||||++|++++ .|..+| .|.|..+...   +++.|++.|...+....-....
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~   82 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAKDGKLIQSALESALPGFQISTRRASSV   82 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence            4578999999999999999999999999999999987 565354 8888755321   1445554444332110000000


Q ss_pred             eeecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC--CeEEEEEEEEcCCCcCCCHhHHHHH
Q 015208           95 LYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD--GKVMDLFFVTDTRELLHTRKRKEDT  172 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~--~~~~d~F~V~~~~~~~~~~~~~~~l  172 (411)
                      .. .+  . ......++|+|.|+||||++++|+++|+++|+||.+++++| .+  .+..+.|++....+.+ ++.. +.|
T Consensus        83 ~~-~~--~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t-~~~~~~~~~~F~m~~~~~~~-~~~~-~~l  155 (195)
T 2nyi_A           83 AE-RH--V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETET-LPAPFAGFTLFRMGSRVAFP-FPLY-QEV  155 (195)
T ss_dssp             -------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-EECSSTTCEEEEEEEEEEEE-GGGH-HHH
T ss_pred             Ee-CC--c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeee-cccccCCCCeEEEEEEEEcC-CCcc-HHH
Confidence            00 11  1 34456799999999999999999999999999999999998 43  2335778776654322 2334 778


Q ss_pred             HHHHHHHHcc
Q 015208          173 YEHLKTILGN  182 (411)
Q Consensus       173 ~~~L~~~L~~  182 (411)
                      ++.|......
T Consensus       156 ~~~l~~~a~~  165 (195)
T 2nyi_A          156 VTALSRVEEE  165 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888875543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=3.7e-17  Score=148.89  Aligned_cols=166  Identities=12%  Similarity=0.086  Sum_probs=113.8

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  187 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~  187 (411)
                      ..++|+|+|+|||||+++|+++|+++|+||.+|++++..++.++ .|.|..+..  ..+.+++.|++.|..++.+..   
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~---   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTR---   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEE---
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcC---
Confidence            46899999999999999999999999999999999985544444 888865422  122345666555544332210   


Q ss_pred             ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHh
Q 015208          188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  267 (411)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~  267 (411)
                              +          .-++.                .  .+    . ......++|+|.|+|||||+++|+++|++
T Consensus        78 --------~----------~~~~~----------------~--~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La~  116 (195)
T 2nyi_A           78 --------R----------ASSVA----------------E--RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLAK  116 (195)
T ss_dssp             --------E----------CCCC--------------------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHH
T ss_pred             --------C----------eEEEE----------------e--CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHH
Confidence                    1          00000                0  01    1 34456799999999999999999999999


Q ss_pred             CCeEEEEEEEEeeecC--ceEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHcC-CceEEEe
Q 015208          268 YNIQVSYGRFSRRQRG--NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ-PLRVTVV  325 (411)
Q Consensus       268 ~g~~i~~a~i~~~t~g--~~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~-~~~~~i~  325 (411)
                      +|+||.+++..  +.+  ++..+.|++. ..+.+  ++.. +.|++.|...... .+.+.+.
T Consensus       117 ~g~nI~~~~~~--t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~l~~di~~~  173 (195)
T 2nyi_A          117 KGANIVELETE--TLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEEFGVDIDLE  173 (195)
T ss_dssp             TTCEEEEEEEE--EEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCEEEceee--ecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHHcCeEEEEE
Confidence            99999999988  555  5567899885 22222  2335 7888888654433 3444444

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.72  E-value=1e-16  Score=145.48  Aligned_cols=158  Identities=11%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYR   98 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~   98 (411)
                      ...|+|+|+||||+|++++++|+++|+||+++++++ .|. |...|.|..+. ..++.+++.|.+.... ..... .+.+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~-f~~~~~v~~~~-~~~~~l~~~L~~~~~~-~~~~~-~~~~   81 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKE-FTLLMLISGSP-SNITRVETTLPLLGQQ-HDLIT-MMKR   81 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTE-EEEEEEEEECH-HHHHHHHHHHHHHHHH-HTCEE-EEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCc-eEEEEEEecCC-CCHHHHHHHHHHHHHh-cCCEE-EEEe
Confidence            578999999999999999999999999999999987 555 55688887653 4567777777765421 11100 1111


Q ss_pred             cc-ccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC---CeEEEEEEEEcCCCcCCCHhHHHHHHH
Q 015208           99 AE-MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD---GKVMDLFFVTDTRELLHTRKRKEDTYE  174 (411)
Q Consensus        99 ~~-~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~---~~~~d~F~V~~~~~~~~~~~~~~~l~~  174 (411)
                      .. ..+......++|+|.++||||++++|+++|+++|+||.+++.+|...   .+..+.|+++...+.+ ++...+.|++
T Consensus        82 ~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~l~~  160 (192)
T 1u8s_A           82 TSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQLQE  160 (192)
T ss_dssp             ECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHHHHH
T ss_pred             CCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHHHHH
Confidence            11 11344557789999999999999999999999999999999998321   2456788886654321 2334677888


Q ss_pred             HHHHHHcc
Q 015208          175 HLKTILGN  182 (411)
Q Consensus       175 ~L~~~L~~  182 (411)
                      .|......
T Consensus       161 ~l~~~~~~  168 (192)
T 1u8s_A          161 EFDALCTA  168 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88875543

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.64  E-value=2.9e-15  Score=135.82  Aligned_cols=158  Identities=10%  Similarity=0.051  Sum_probs=111.7

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccccccc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC  187 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~~~~  187 (411)
                      ..++|+|+++||||++++|+++|+++|+||.++++++ ..|.+.-.|.|..+      +..++.|++.|.++.....   
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~~---   74 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGKEFTLLMLISGS------PSNITRVETTLPLLGQQHD---   74 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETTEEEEEEEEEEC------HHHHHHHHHHHHHHHHHHT---
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cCCceEEEEEEecC------CCCHHHHHHHHHHHHHhcC---
Confidence            4689999999999999999999999999999999998 45666668888543      2467888888887663211   


Q ss_pred             ccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCCchhHHHHHHHHHHh
Q 015208          188 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD  267 (411)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~l~~  267 (411)
                         +   ..            ++...   +            .++     +..+...++|+|.|+||||++++|+++|++
T Consensus        75 ---~---~~------------~~~~~---~------------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~  116 (192)
T 1u8s_A           75 ---L---IT------------MMKRT---S------------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQ  116 (192)
T ss_dssp             ---C---EE------------EEEEE---C------------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHH
T ss_pred             ---C---EE------------EEEeC---C------------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHHH
Confidence               0   01            00000   0            011     244557789999999999999999999999


Q ss_pred             CCeEEEEEEEEeeecCc----eEEEEEEEe-cCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          268 YNIQVSYGRFSRRQRGN----CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       268 ~g~~i~~a~i~~~t~g~----~~~d~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      +|+||.+++..  |.+.    +..+.|++. ..+.  +++...+.|++.|.+...
T Consensus       117 ~~~nI~~~~~~--t~~~~~~~~~~~~F~~~~~~~~--~~~~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          117 RQIGMASLSAQ--TISKDKLHSEQNQFHIAISARV--DSGCNLMQLQEEFDALCT  167 (192)
T ss_dssp             TTCCEEEEEEE--EEC--------CEEEEEEEEEE--CTTSCHHHHHHHHHHHHH
T ss_pred             cCCcHHHhhhh--cccCCccCCCCCEEEEEEEEeC--CCCCCHHHHHHHHHHHHH
Confidence            99999998887  5663    577889885 2221  122346788888765443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.02  E-value=7.1e-09  Score=104.39  Aligned_cols=137  Identities=8%  Similarity=-0.018  Sum_probs=95.7

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC--C
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ--P  319 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~--~  319 (411)
                      ...++|++.|+|||||++.|+.+|+++|+||.++.-.  ..++.+.-...+...+..    ...+.|++.|.. +..  .
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~--~~~~~f~~~~~~~~~~~~----~~~~~l~~~l~~-~~~~~~   82 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQV--VIRHRLTLGVLVCCPADV----ADGPALRHDVEA-AIRKVG   82 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEE--EETTEEEEEEEEEECHHH----HTSHHHHHHHHH-HHHHTT
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeE--EECCEeEEEEEEEecCCc----CCHHHHHHHHHH-HHHHcC
Confidence            3468999999999999999999999999999999877  456665533333321110    023678777744 333  3


Q ss_pred             ceEEEeccCCC--ccccccceEEEEeCC-CCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208          320 LRVTVVSRGPD--TELLVANPVELSGKG-RPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  389 (411)
Q Consensus       320 ~~~~i~~~~~~--~~~~~~~~~~v~~~D-RpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~  389 (411)
                      +.+.+......  ......+.+.+.|.+ +||++.+|+.+|+++|+||.++..-  +.....  ...|++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~--~~~~~~--~~~~~v~~~  151 (415)
T 3p96_A           83 LDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGV--SDYPVI--GLELRVSVP  151 (415)
T ss_dssp             CEEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEE--ESSSSE--EEEEEEECC
T ss_pred             eEEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeec--cCCCce--EEEEEeeCC
Confidence            44444432221  122346689999999 9999999999999999999999877  533333  344777544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.99  E-value=1.3e-08  Score=102.57  Aligned_cols=154  Identities=12%  Similarity=0.063  Sum_probs=102.5

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc-cHHHHHHHHHhhCCCCCCcceeeee
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT-RWGLLKKRLMGACPSCSSASVVLYY   97 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~-~~~~l~~~L~~~l~~~~~~~~~~~~   97 (411)
                      ....|+|.|+|||||.+.|+++|+++|+||++++.+..+.+|.-...+..+... ..+.+++.|+..... .... ..+.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRK-VGLD-VSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHH-TTCE-EEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHH-cCeE-EEEE
Confidence            357899999999999999999999999999999998844447666666544322 335666666553211 1111 1111


Q ss_pred             ccc-ccCCCCCceEEEEEEecC-cccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHH
Q 015208           98 RAE-MQAPKPSDVFLLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEH  175 (411)
Q Consensus        98 ~~~-~~~~~~~~~t~i~v~~~D-r~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~  175 (411)
                      ... ........+..+++.+.| ++|++.+|+.+|+.+|+||.+.+..+ ....+.--|+|.-+.      ...+.++..
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~-~~~~~~~~~~v~~~~------~~~~~l~~~  161 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS-DYPVIGLELRVSVPP------GADEALRTA  161 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE-SSSSEEEEEEEECCT------TCHHHHHHH
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc-CCCceEEEEEeeCCC------CCHHHHHHH
Confidence            111 111244578899999999 99999999999999999998888777 222232236663332      123456666


Q ss_pred             HHHHHc
Q 015208          176 LKTILG  181 (411)
Q Consensus       176 L~~~L~  181 (411)
                      |.+...
T Consensus       162 l~~l~~  167 (415)
T 3p96_A          162 LNRVSS  167 (415)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            665443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.41  E-value=1.1e-05  Score=68.94  Aligned_cols=112  Identities=12%  Similarity=0.016  Sum_probs=78.6

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE-cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceeeeec
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST-DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVLYYR   98 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~~~~   98 (411)
                      ..+++|..+|+||.++++++.|+++|+||..-.+.. ... -.-.|.+.     +.+...+.|++.  +.. .       
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~-~~~~~~~~-----d~~~a~~~L~~~--G~~-v-------   69 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADF-GILRGIVS-----DPDKAYKALKDN--HFA-V-------   69 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEES-----CHHHHHHHHHHT--TCC-E-------
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCC-CEEEEEeC-----CHHHHHHHHHHc--CCe-E-------
Confidence            357899999999999999999999999999876653 221 11234432     445555656652  111 0       


Q ss_pred             ccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208           99 AEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus        99 ~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                              ....++-+..+|+||.+++++++|+++|+||.....+. .+++..-+|.+
T Consensus        70 --------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~  118 (144)
T 2f06_A           70 --------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP  118 (144)
T ss_dssp             --------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred             --------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence                    01245777789999999999999999999998777663 34666555554

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.25  E-value=7.5e-06  Score=64.09  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      ...++|.++||||++++++++|+++|+||.+....+++..+.-.+.+.-+.....+.+.+.|++..
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999987434476777776554446677777777643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.23  E-value=5.7e-06  Score=64.79  Aligned_cols=66  Identities=8%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  315 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~  315 (411)
                      ..+.|++.|+||||+|++|+.+|+++|+||.+....+  ..+.+.-.+.+...     +...++.|.+.|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~--~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTV--LDEYFTMMAVVSSD-----EKQDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTEEEEEEEEEES-----SCCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEE--EcCEEEEEEEEEeC-----CCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999888773  34444433444322     223567788887543

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.15  E-value=0.00071  Score=71.13  Aligned_cols=279  Identities=19%  Similarity=0.180  Sum_probs=158.5

Q ss_pred             CcEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVN-CPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~-~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      +.+.|++. .++.||..+++-+.|+++|+||---..+.  +|. .-..|.|....-.....+.+.+...+.... . ...
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~-~~Isftv~~~~~~~a~~~l~~~~~el~~~~-~-~~~  345 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNS-NDIAFTVVKDLLNTAEAVTSAIAPALRSYP-E-ADQ  345 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTE-EEEEEEECGGGHHHHHHHHHHHGGGGSSST-T-CSS
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCC-ceEEEEEeHHHHHHHHHHHHHHHHHhhccc-c-ccC
Confidence            34455555 47899999999999999999984322221  343 335566664321122222233333221000 0 000


Q ss_pred             eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHH
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDT  172 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l  172 (411)
                      +..    -....+...|.|++.   .+||..+++..+|++.|+||....  |+ .-.  -.|.|..        +..++.
T Consensus       346 ~~~----v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~--Is~vI~~--------~d~~~A  408 (600)
T 3l76_A          346 EAE----IIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVK--VSCVIDQ--------RDADRA  408 (600)
T ss_dssp             SSE----EEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSE--EEEEEEG--------GGHHHH
T ss_pred             cce----eEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCE--EEEEEcH--------HHHHHH
Confidence            000    012346889999985   689999999999999999996544  52 221  2355532        223444


Q ss_pred             HHHHHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEe-
Q 015208          173 YEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC-  251 (411)
Q Consensus       173 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~-  251 (411)
                      .+.|.+.+....           .  +     ..++.  ..+            ....=+-|..+    ++.+.|++.+ 
T Consensus       409 v~aLh~~f~~~~-----------t--~-----~~~~~--~~~------------~~~~v~Gia~~----~~~a~i~i~~~  452 (600)
T 3l76_A          409 IAALSNAFGVTL-----------S--P-----PKNQT--DTS------------HLPAVRGVALD----QDQAQIAIRHV  452 (600)
T ss_dssp             HHHHHHHTTCCB-----------C--C-----CCCCC--C---------------CCSCCEEEEE----CSEEEEEEEEE
T ss_pred             HHHHHHhhcccC-----------C--C-----ccccc--ccc------------ccCceEEEEee----CCEEEEEEecC
Confidence            456666664311           0  0     00000  000            00112345544    3566777754 


Q ss_pred             CCchhHHHHHHHHHHhCCeEEEEEEEEeeec---CceEEE-EEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc---eEEE
Q 015208          252 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEID-LFIMQADGKKIVDPSKQNGLSSRLWMELLQPL---RVTV  324 (411)
Q Consensus       252 ~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~---g~~~~d-~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~---~~~i  324 (411)
                      +|+||+.++|...|++.|+||.--.-+....   |....| .|.+.        .+.+++..+.|.+ +...+   .+.+
T Consensus       453 ~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~--------~~d~~~a~~~l~~-~~~~~~~~~v~~  523 (600)
T 3l76_A          453 PDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVA--------EGDSSQAEAILQP-LIKDWLDAAIVV  523 (600)
T ss_dssp             ESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEE--------HHHHHHHHHHHHH-HTTTSTTCEEEE
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEe--------HHHHHHHHHHHHH-HHHhcCCceEEE
Confidence            8999999999999999999996222211111   211222 35554        2344455455433 33322   2222


Q ss_pred             eccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          325 VSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       325 ~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      . .+       -..+.++|.   .+||+-..+-++|++.||||.-..++
T Consensus       524 ~-~~-------~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistS  564 (600)
T 3l76_A          524 N-KA-------IAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATS  564 (600)
T ss_dssp             E-CC-------EEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEEC
T ss_pred             e-CC-------eEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcC
Confidence            1 11       237889985   99999999999999999999988876

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.04  E-value=9.5e-05  Score=63.00  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEE
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV  324 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i  324 (411)
                      ..++|.-+|+||.+++++..|++.|+||..-.+.  ...+ + .++.++     .+++   ++.++.|.. .  ...+..
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~--~~~~-~-~~~~~~-----~~d~---~~a~~~L~~-~--G~~v~~   71 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIA--ENAD-F-GILRGI-----VSDP---DKAYKALKD-N--HFAVNI   71 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE--ECSS-C-EEEEEE-----ESCH---HHHHHHHHH-T--TCCEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEE--ecCC-C-CEEEEE-----eCCH---HHHHHHHHH-c--CCeEee
Confidence            4678889999999999999999999999966554  1222 1 122222     1233   333444432 1  111100


Q ss_pred             eccCCCccccccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          325 VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       325 ~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                                 ...+-+.-.|+||.+.+++++|++.|+||..+-+.
T Consensus        72 -----------~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           72 -----------TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             -----------EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             -----------eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence                       11355566799999999999999999999876654

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.83  E-value=0.00029  Score=67.17  Aligned_cols=66  Identities=14%  Similarity=0.149  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE---cCcEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST---DGKWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t---dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      ....++|.|+|||||.++++++|+++|+||.+++.++   .|. |.-...+..+.+.+.+.+++.|+...
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~-Ffmr~~~~~~~~~~~~~L~~~f~~la   75 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGR-FFIRVEFRQPDDFDEAGFRAGLAERS   75 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTE-EEEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCe-eEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999986   444 55566666555456777887776653

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.82  E-value=8.9e-05  Score=57.21  Aligned_cols=63  Identities=13%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L  312 (411)
                      ..+.|.+.+.||||+|++|+.+|+++|+||.+....  +.++.+...|.+.     +.+++.++++.+.|
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~--~~~~~~~~~i~v~-----~~~~~~l~~l~~~L   66 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--AKDGIFTCNLMIF-----VKNTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--ECSSEEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEE--EcCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            346789999999999999999999999999988887  4444444444444     23345666665554

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.82  E-value=0.0001  Score=56.86  Aligned_cols=50  Identities=14%  Similarity=0.270  Sum_probs=41.3

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      -.+.|.|.++||||+|++|+++|++.|+||.+..+.+ .++.+...|.+..
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~-~~~~~~~~i~v~~   53 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA-KDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE-CSSEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE-cCCEEEEEEEEEE
Confidence            3578899999999999999999999999999999987 4446666665533

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.77  E-value=9.6e-05  Score=71.00  Aligned_cols=68  Identities=12%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEc--CcEEEEEEEEEcCCC-ccHHHHHHHHHhh
Q 015208           17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTD--GKWCYIVFWVIGDSQ-TRWGLLKKRLMGA   84 (411)
Q Consensus        17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~td--g~~~~d~f~V~~~~g-~~~~~l~~~L~~~   84 (411)
                      ......+++.|+|||||.++|+++|+++|+||++++.+.|  ..+|.-...+..+.+ .+.+.|++.|+..
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l   89 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI   89 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999874  344656666665443 4567777777654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.71  E-value=0.0005  Score=65.64  Aligned_cols=117  Identities=14%  Similarity=0.165  Sum_probs=74.6

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE---cCcEEEEEEEEEcCCC-ccHHHHHHHHHhhCCCCCCcceee
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST---DGKWCYIVFWVIGDSQ-TRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t---dg~~~~d~f~V~~~~g-~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      ...+++.|+|||||.++++++|+++|+||.+++.++   .|. |.-...+.-+.+ .+.+.+++.|+..... ...   .
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~-Ffmr~~~~~~~~~~~~~~L~~~f~~la~~-~~m---~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGH-FFMRVVFNAAAKVIPLASLRTGFGVIAAK-FTM---G   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTE-EEEEEEEEESSCCCCHHHHHHHHHHHHHH-TTC---E
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCc-eEEEEEEEcCCCCCCHHHHHHHHHHHHHH-cCC---E
Confidence            468999999999999999999999999999999975   444 656666655543 4667787777654321 111   0


Q ss_pred             eecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP  146 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~  146 (411)
                      +.   +...  .....|-|....+---|.++......-.+++.-+-+.+.+
T Consensus        81 ~~---l~~~--~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~  126 (288)
T 3obi_A           81 WH---MRDR--ETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNH  126 (288)
T ss_dssp             EE---EEET--TSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESS
T ss_pred             EE---eecc--CCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCC
Confidence            00   0111  1123444444444446777777777666655445555533

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.71  E-value=0.00097  Score=58.29  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             CCcEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEE--EcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCccee
Q 015208           18 GDPCVITVNC-PDKTGLGCDLCRIILFFGLSIVRGDVS--TDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVV   94 (411)
Q Consensus        18 ~~~~~V~v~~-~Dr~Gl~~~i~~~L~~~glnI~~a~i~--tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~   94 (411)
                      .+...|+|.+ +|+||.++++.+.|+++|+||.--..+  .+|. ..-.|.|...   +.+...+.|++.... ....  
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~-~~isf~v~~~---~~~~a~~~l~~~~~~-l~~~--   95 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGT-TDFSFTVPRG---DYKQTLEILSERQDS-IGAA--   95 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CE-EEEEEEECGG---GHHHHHHHHHHSSTT-TTCS--
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCe-eEEEEEEech---HHHHHHHHHHHHHHH-cCCc--
Confidence            3678889984 999999999999999999999865543  2554 4456777642   233344556653321 1110  


Q ss_pred             eeecccccCCCCCceEEEEEEecC---cccHHHHHHHHHHhCCceEEE
Q 015208           95 LYYRAEMQAPKPSDVFLLKLSCYD---RKGLLYDVTAVLCELELTIEK  139 (411)
Q Consensus        95 ~~~~~~~~~~~~~~~t~i~v~~~D---r~GLl~~i~~~L~~~glnI~~  139 (411)
                         .    -....+...|.|++.+   +||.++++..+|+++|+||..
T Consensus        96 ---~----i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A           96 ---S----IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             ---E----EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             ---e----EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence               0    0123468899999977   999999999999999999987

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.65  E-value=0.0017  Score=61.86  Aligned_cols=118  Identities=11%  Similarity=0.094  Sum_probs=69.9

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC--Cc
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ--PL  320 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~--~~  320 (411)
                      ..++|++.|+|||||++.|+..|+++|+||.++.-......+.|.-...++.....    ...++|+++|.+ +..  .+
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~----~~~~~L~~~f~~-la~~~~m   79 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV----IPLASLRTGFGV-IAAKFTM   79 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC----CCHHHHHHHHHH-HHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC----CCHHHHHHHHHH-HHHHcCC
Confidence            34799999999999999999999999999998886422234444322222322111    135677777643 333  23


Q ss_pred             eEEEeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCCe--eEEEEEecc
Q 015208          321 RVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDI--CIFSAEIGR  371 (411)
Q Consensus       321 ~~~i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~gi--~I~~~~~~~  371 (411)
                      ++.+.....      ..++-|-...+.--+.++-...++-.+  .|.-.-+++
T Consensus        80 ~~~l~~~~~------~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~  126 (288)
T 3obi_A           80 GWHMRDRET------RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNH  126 (288)
T ss_dssp             EEEEEETTS------CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESS
T ss_pred             EEEeeccCC------CcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCC
Confidence            444443221      124444444555677777777665443  444444444

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.65  E-value=0.00052  Score=65.45  Aligned_cols=71  Identities=10%  Similarity=0.018  Sum_probs=47.4

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      ..+++++.|+|||||++.|+..|+++|+||.++.-.++...+.|.-...++..+ .    ...++|+++|.+ +..+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~----~~~~~L~~~f~~-la~~   77 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D----FDEAGFRAGLAE-RSEA   77 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-S----CCHHHHHHHHHH-HHGG
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-C----CCHHHHHHHHHH-HHHH
Confidence            357999999999999999999999999999988865322334332211122111 1    235778888743 4443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.65  E-value=0.00027  Score=61.87  Aligned_cols=111  Identities=16%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             CCceEEEEEe-CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208          242 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  320 (411)
Q Consensus       242 ~~~tvi~v~~-~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~  320 (411)
                      ++.+.|+|.+ +|+||.++++..+|+++|+||..-..+. +.++...=.|++..        +..++..+.|.+ +...+
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~-~~~g~~~isf~v~~--------~~~~~a~~~l~~-~~~~l   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNV-GSEGTTDFSFTVPR--------GDYKQTLEILSE-RQDSI   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECG--------GGHHHHHHHHHH-SSTTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCC-CCCCeeEEEEEEec--------hHHHHHHHHHHH-HHHHc
Confidence            3567888885 9999999999999999999998444321 11122222355542        122333444433 32222


Q ss_pred             eE---EEeccCCCccccccceEEEEeCC---CCchHHHHHHHHHhCCeeEEEEEec
Q 015208          321 RV---TVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       321 ~~---~i~~~~~~~~~~~~~~~~v~~~D---RpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ..   .+ .++       ...+.|.|.+   +||++..+..+|++.|+||....++
T Consensus        93 ~~~~i~~-~~~-------~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ists  140 (167)
T 2re1_A           93 GAASIDG-DDT-------VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTS  140 (167)
T ss_dssp             TCSEEEE-ESS-------EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEEC
T ss_pred             CCceEEe-cCC-------EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcc
Confidence            22   11 111       2378999987   9999999999999999999987644

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.62  E-value=0.00063  Score=64.90  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE---cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST---DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t---dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      ....+++.|+|||||.++|+++|+++|+||++++.++   .|. |.-...+..+. ..++.+++.|+..... ...   .
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~-Ffmr~~~~~~~-~~~~~L~~~f~~la~~-~~m---~   79 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSK-FFMRVSVEIPV-AGVNDFNSAFGKVVEK-YNA---E   79 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTE-EEEEEEEECCC----CHHHHHHHHHHGG-GTC---E
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCe-EEEEEEEEcCC-CCHHHHHHHHHHHHHH-cCC---e
Confidence            4578999999999999999999999999999999975   444 55555555433 2455777777654321 111   1


Q ss_pred             eecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP  146 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~  146 (411)
                      +.   +.......  .|-|...-+---|.++......-.+++.-+-+.+.+
T Consensus        80 ~~---l~~~~~~~--ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~  125 (287)
T 3nrb_A           80 WW---FRPRTDRK--KVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNH  125 (287)
T ss_dssp             EE---EEETTCCC--EEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESS
T ss_pred             eE---eeccCCCc--EEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCC
Confidence            10   01111122  333333333345777777776655544335555544

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.61  E-value=0.00024  Score=68.00  Aligned_cols=65  Identities=12%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE---cCcEEEEEEEEEcC--C-CccHHHHHHHHHhh
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST---DGKWCYIVFWVIGD--S-QTRWGLLKKRLMGA   84 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t---dg~~~~d~f~V~~~--~-g~~~~~l~~~L~~~   84 (411)
                      ....+++.|+|||||.++|+++|+++|+||.+++.++   .|. |.-...+..+  . +.+.+.+++.|+..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~-Ffmr~~~~~~~~~~~~~~~~L~~~f~~l   79 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSAR-FFVRCVFHATDDADALRVDALRREFEPI   79 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTE-EEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCc-eEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence            3578999999999999999999999999999999985   444 5445555444  3 34567777777654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.57  E-value=0.00057  Score=59.76  Aligned_cols=112  Identities=14%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             CCceEEEEEe-CCchhHHHHHHHHHHhCCeEEEEEEEEeeec---CceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          242 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       242 ~~~tvi~v~~-~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~---g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      ++.+.|++.+ +|+||.++++..+|++.|+||..  |+....   .+...=.|.+..+     +.++..++-+.+...+.
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~~-----d~~~a~~~L~~~~~~~~   86 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKKD-----FAQEALEALEPVLAEIG   86 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEGG-----GHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEehH-----HHHHHHHHHHHHHHHhC
Confidence            4678888887 89999999999999999999984  431111   1122224666421     11222222222333343


Q ss_pred             CCceEEEeccCCCccccccceEEEEeCC---CCchHHHHHHHHHhCCeeEEEEEec
Q 015208          318 QPLRVTVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~D---RpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      -  .+.+. .+       ...+.++|.+   +||++..+.++|++.||||.-..++
T Consensus        87 ~--~v~~~-~~-------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S  132 (167)
T 2dt9_A           87 G--EAILR-PD-------IAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS  132 (167)
T ss_dssp             C--EEEEE-CS-------EEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred             C--cEEEe-CC-------EEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc
Confidence            1  33331 11       2378999987   9999999999999999999666544

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.50  E-value=0.0027  Score=60.45  Aligned_cols=114  Identities=11%  Similarity=0.133  Sum_probs=69.0

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEe--cCCCcCCCHHHHHHHHHHHHHHHcCCc
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMELLQPL  320 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~--~~g~~~~~~~~~~~l~~~L~~~l~~~~  320 (411)
                      ..++|++.|+|||||++.|+..|+++|+||.++.-......+.    |++.  .+...    ...+.|+++|.+ +..++
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~----Ffmr~~~~~~~----~~~~~L~~~f~~-la~~~   76 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSK----FFMRVSVEIPV----AGVNDFNSAFGK-VVEKY   76 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTE----EEEEEEEECCC-------CHHHHHHHH-HHGGG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCe----EEEEEEEEcCC----CCHHHHHHHHHH-HHHHc
Confidence            4579999999999999999999999999999888642223443    4332  11111    123467777643 44433


Q ss_pred             --eEEEeccCCCccccccceEEEEeCCCCchHHHHHHHHHhCC--eeEEEEEecc
Q 015208          321 --RVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLD--ICIFSAEIGR  371 (411)
Q Consensus       321 --~~~i~~~~~~~~~~~~~~~~v~~~DRpGil~dvt~~l~~~g--i~I~~~~~~~  371 (411)
                        .+.+.....      ..++-|....+---+.++-...++-.  +.|.-.=+++
T Consensus        77 ~m~~~l~~~~~------~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~  125 (287)
T 3nrb_A           77 NAEWWFRPRTD------RKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNH  125 (287)
T ss_dssp             TCEEEEEETTC------CCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESS
T ss_pred             CCeeEeeccCC------CcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCC
Confidence              344443221      12444444445567777777766544  4565555554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.40  E-value=0.00066  Score=60.08  Aligned_cols=110  Identities=18%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             CCceEEEEE-eCCchhHHHHHHHHHHhCCeEEEEEEEEeeec---CceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          242 PGHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       242 ~~~tvi~v~-~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~---g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      ++.+.|+|. .+|+||.++++...|++.|+||..-..+  +.   .+...=.|.+..        +..++..+.|.+ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s--~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN--VSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC--CCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC--CCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HH
Confidence            466778884 6999999999999999999999844433  22   111111255542        223444444433 22


Q ss_pred             CCce---EEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          318 QPLR---VTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       318 ~~~~---~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ..+.   +.+. ..       ...+.+.|.   ++||+...+.++|++.||||.-..++
T Consensus        82 ~~~~~~~v~~~-~~-------~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS  132 (178)
T 2dtj_A           82 VQGNWTNVLYD-DQ-------VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS  132 (178)
T ss_dssp             TTTTCSEEEEE-SC-------EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HhcCCCeEEEe-CC-------eEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC
Confidence            2211   2111 11       237888887   89999999999999999999887644

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.36  E-value=0.0037  Score=59.92  Aligned_cols=67  Identities=13%  Similarity=0.113  Sum_probs=44.9

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHH
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  313 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~  313 (411)
                      ..+++++.|+|||||++.|+..|+++|+||.++.-..+...+.|.-...+...+..    ...+.|+++|.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~----~~~~~L~~~l~   87 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLP----FDLDGFREAFT   87 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSS----SCHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCC----CCHHHHHHHHH
Confidence            34789999999999999999999999999998887632224443321222211111    13567777764

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.31  E-value=0.0058  Score=58.31  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=36.2

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceE
Q 015208          243 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE  286 (411)
Q Consensus       243 ~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~  286 (411)
                      ..+++++.|+|||||++.|+..|+++|+||.++.-..+...+.|
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~F   52 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARF   52 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCce
Confidence            45799999999999999999999999999998886532233433

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.19  E-value=0.14  Score=53.59  Aligned_cols=192  Identities=15%  Similarity=0.134  Sum_probs=117.8

Q ss_pred             CCcEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcce-
Q 015208           18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASV-   93 (411)
Q Consensus        18 ~~~~~V~v~~~---Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~-   93 (411)
                      .+...|.|++.   ++||+.+++..+|.+.|.||.-..  +...  -..|.|...   +.+...+.|.+.+........ 
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~--~Is~vI~~~---d~~~Av~aLh~~f~~~~t~~~~  425 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV--KVSCVIDQR---DADRAIAALSNAFGVTLSPPKN  425 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS--EEEEEEEGG---GHHHHHHHHHHHTTCCBCCCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC--EEEEEEcHH---HHHHHHHHHHHhhcccCCCccc
Confidence            46788999976   799999999999999999997544  3332  245555532   333444566666532210000 


Q ss_pred             --eeeecccc-cCCCCCceEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeCC---CC--eEEEEEEEEcCCCcCC
Q 015208           94 --VLYYRAEM-QAPKPSDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTP---DG--KVMDLFFVTDTRELLH  164 (411)
Q Consensus        94 --~~~~~~~~-~~~~~~~~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~---~~--~~~d~F~V~~~~~~~~  164 (411)
                        .....+.+ .-....+...|+|.. +|+||+.++|.+.|+++|+||.--......   +|  ..--.|.|..      
T Consensus       426 ~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~------  499 (600)
T 3l76_A          426 QTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE------  499 (600)
T ss_dssp             CCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH------
T ss_pred             cccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH------
Confidence              00000000 011234667777765 999999999999999999999543333211   24  2333465522      


Q ss_pred             CHhHHHHHHHHHHHHHcccccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCc
Q 015208          165 TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGH  244 (411)
Q Consensus       165 ~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~  244 (411)
                        +.+++..+.|.+ +..+.                                             .+.+|.++    ++.
T Consensus       500 --~d~~~a~~~l~~-~~~~~---------------------------------------------~~~~v~~~----~~~  527 (600)
T 3l76_A          500 --GDSSQAEAILQP-LIKDW---------------------------------------------LDAAIVVN----KAI  527 (600)
T ss_dssp             --HHHHHHHHHHHH-HTTTS---------------------------------------------TTCEEEEE----CCE
T ss_pred             --HHHHHHHHHHHH-HHHhc---------------------------------------------CCceEEEe----CCe
Confidence              233444333433 22110                                             01234444    357


Q ss_pred             eEEEEEe---CCchhHHHHHHHHHHhCCeEEEE
Q 015208          245 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY  274 (411)
Q Consensus       245 tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~  274 (411)
                      ..|.+.|   +.+||+.+.+.++|++.|+||..
T Consensus       528 akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~m  560 (600)
T 3l76_A          528 AKVSIVGSGMIGHPGVAAHFFAALAQENINIEM  560 (600)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCE
T ss_pred             EEEEEECcccccCccHHHHHHHHHHHCCCceEE
Confidence            8888988   69999999999999999999983

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.16  E-value=0.0017  Score=56.76  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ...|.|...|+||+|++|+++|++.|+||.+..+.++.+ +...-+|.|. .     ++..+++|.+.|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~-----d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G-----DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S-----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c-----cHHHHHHHHHHHcCCC
Confidence            367899999999999999999999999999999986554 6666667774 2     2556778877777743

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.16  E-value=0.0093  Score=52.56  Aligned_cols=137  Identities=16%  Similarity=0.088  Sum_probs=86.3

Q ss_pred             CCcEEEEE-EcCCCCChHHHHHHHHHhCCCeEEEEEEEE----cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcc
Q 015208           18 GDPCVITV-NCPDKTGLGCDLCRIILFFGLSIVRGDVST----DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSAS   92 (411)
Q Consensus        18 ~~~~~V~v-~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t----dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~   92 (411)
                      .+.+.|+| ..+|+||.++++.+.|.++|+||.--..++    +|. .--.|.+..   .+.+...+.|++.... ....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~-~~isf~v~~---~d~~~a~~~l~~~~~~-~~~~   87 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGT-TDITFTCPR---SDGRRAMEILKKLQVQ-GNWT   87 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCE-EEEEEEEEH---HHHHHHHHHHHTTTTT-TTCS
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCc-eEEEEEEcc---ccHHHHHHHHHHHHHh-cCCC
Confidence            35778888 469999999999999999999998654432    333 222366663   1223344555553221 1110


Q ss_pred             eeeeecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHH
Q 015208           93 VVLYYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRK  169 (411)
Q Consensus        93 ~~~~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~  169 (411)
                        .     +  ....+...|.|++.   +.||.++++..+|++.|+||..  |.|+. -.  -.|.|.        ++..
T Consensus        88 --~-----v--~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~--istSe-~~--Is~vV~--------~~d~  145 (178)
T 2dtj_A           88 --N-----V--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--ISTSE-IR--ISVLIR--------EDDL  145 (178)
T ss_dssp             --E-----E--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE--EEEET-TE--EEEEEE--------GGGH
T ss_pred             --e-----E--EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE--EEcCC-Ce--EEEEEe--------HHHH
Confidence              0     0  12346788999986   8899999999999999999986  43423 22  234442        2334


Q ss_pred             HHHHHHHHHHHc
Q 015208          170 EDTYEHLKTILG  181 (411)
Q Consensus       170 ~~l~~~L~~~L~  181 (411)
                      ++..+.|.+.+.
T Consensus       146 ~~Av~~Lh~~F~  157 (178)
T 2dtj_A          146 DAAARALHEQFQ  157 (178)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            444455666664

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.09  E-value=0.023  Score=49.39  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             CceEEEEEEe-cCcccHHHHHHHHHHhCCceEEEEEEEeC--CCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHccc
Q 015208          107 SDVFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTT--PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNA  183 (411)
Q Consensus       107 ~~~t~i~v~~-~Dr~GLl~~i~~~L~~~glnI~~A~I~T~--~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~  183 (411)
                      .+.+.|+|.+ +|+||.++++.+.|+++|+||........  ..|..--.|.|...+        .++..+.|.+.... 
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d--------~~~a~~~L~~~~~~-   84 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDF--------AQEALEALEPVLAE-   84 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGG--------HHHHHHHHHHHHHH-
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHH--------HHHHHHHHHHHHHH-
Confidence            4677888876 89999999999999999999975433221  123444567774321        22233333331110 


Q ss_pred             ccccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeCC---chhHHHH
Q 015208          184 MISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD---HKGLLYD  260 (411)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D---RpGLL~~  260 (411)
                                                +                  ..  .+.++    ++...+++.|.+   +||+++.
T Consensus        85 --------------------------~------------------~~--~v~~~----~~~a~vsvVG~gm~~~~Gv~a~  114 (167)
T 2dt9_A           85 --------------------------I------------------GG--EAILR----PDIAKVSIVGVGLASTPEVPAK  114 (167)
T ss_dssp             --------------------------H------------------CC--EEEEE----CSEEEEEEEESSGGGSTHHHHH
T ss_pred             --------------------------h------------------CC--cEEEe----CCEEEEEEECCCcccCcCHHHH
Confidence                                      0                  00  23332    367889999977   9999999


Q ss_pred             HHHHHHhCCeEEE
Q 015208          261 IMRTLKDYNIQVS  273 (411)
Q Consensus       261 i~~~l~~~g~~i~  273 (411)
                      +..+|++.|+||.
T Consensus       115 ~f~aL~~~~InI~  127 (167)
T 2dt9_A          115 MFQAVASTGANIE  127 (167)
T ss_dssp             HHHHHHHTTCCCC
T ss_pred             HHHHHHHCCCCEE
Confidence            9999999999996

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.97  E-value=0.053  Score=47.86  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             ceEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeCC--CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccc
Q 015208          108 DVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  184 (411)
Q Consensus       108 ~~t~i~v~-~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~--~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~  184 (411)
                      +.+.|+|. .+|+||.+++|...|+++|+||..-......  .|..--.|.|...+        .++..+.|.+ +..  
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~--------~~~a~~~L~~-~~~--   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--------GPAAVEKLDS-LRN--   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT--------HHHHHHHHHH-THH--
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH--------HHHHHHHHHH-HHH--
Confidence            45666665 4899999999999999999999644332222  45555567774432        1222222333 111  


Q ss_pred             cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHHH
Q 015208          185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI  261 (411)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i  261 (411)
                                              .+                   ....|.++    ++...|.+.|.   ++||+.+.+
T Consensus        84 ------------------------el-------------------~~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~~  116 (181)
T 3s1t_A           84 ------------------------EI-------------------GFSQLLYD----DHIGKVSLIGAGMRSHPGVTATF  116 (181)
T ss_dssp             ------------------------HH-------------------CCSEEEEE----SCEEEEEEEEECCTTCHHHHHHH
T ss_pred             ------------------------hc-------------------CcceEEEe----CCEEEEEEEecccccCchHHHHH
Confidence                                    00                   01134443    25678888886   899999999


Q ss_pred             HHHHHhCCeEEEEEE
Q 015208          262 MRTLKDYNIQVSYGR  276 (411)
Q Consensus       262 ~~~l~~~g~~i~~a~  276 (411)
                      .++|++.|+||....
T Consensus       117 f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          117 CEALAAVGVNIELIS  131 (181)
T ss_dssp             HHHHHHTTCCCCEEE
T ss_pred             HHHHHHCCCcEEEEE
Confidence            999999999998444

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.91  E-value=0.0032  Score=54.94  Aligned_cols=65  Identities=14%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC-CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~-~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..|.|...|+||+|++|+++|++.|+||.+..+..+. .|...-+|.|..      ++..+++|.+.|.+..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec------cHHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999999997655 466666666642      2456777877777744

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.79  E-value=0.0011  Score=57.92  Aligned_cols=34  Identities=6%  Similarity=-0.070  Sum_probs=32.3

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+++...||||+|.+|+.+|+++|+||.++.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~   37 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVA   37 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceee
Confidence            4789999999999999999999999999999997

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.49  E-value=0.0048  Score=53.83  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=32.3

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      +.+++...||||+|.+|+.+|+++|+||.++.+.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~   38 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVA   38 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEE
Confidence            5788999999999999999999999999999997

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.38  E-value=0.035  Score=49.02  Aligned_cols=113  Identities=17%  Similarity=0.089  Sum_probs=69.8

Q ss_pred             CceEEEEE-eCCchhHHHHHHHHHHhCCeEEEEEEEEeeec--CceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          243 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       243 ~~tvi~v~-~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~--g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      +.+.|+|. -+|+||++++|..+|++.|+||..-.-+. ..  .+...=.|++..+     +.+...++-+.+...+. .
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~-s~~~~g~~~isftv~~~-----~~~~a~~~L~~~~~el~-~   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNV-SKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG-F   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECC-CCTTTCEEEEEEEEETT-----THHHHHHHHHHTHHHHC-C
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecC-CcccCCccEEEEEEehh-----HHHHHHHHHHHHHHhcC-c
Confidence            45666664 47999999999999999999998322111 11  2333334666521     11122221122222231 1


Q ss_pred             ceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          320 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       320 ~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ..+.+. .+       -..+.++|.   ++||+...+.++|++.||||....++
T Consensus        88 ~~v~~~-~~-------va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS  133 (181)
T 3s1t_A           88 SQLLYD-DH-------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS  133 (181)
T ss_dssp             SEEEEE-SC-------EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             ceEEEe-CC-------EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC
Confidence            223221 11       227888887   89999999999999999999888755

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.31  E-value=0.015  Score=51.74  Aligned_cols=66  Identities=12%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ...|.|...|+||.|++|+++|+..|+||.+..+..+.+ +..--++.|...      +..+++|.+.|.+..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            578999999999999999999999999999988874344 655556666433      234567777766644

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.27  E-value=0.014  Score=52.56  Aligned_cols=113  Identities=17%  Similarity=0.103  Sum_probs=70.1

Q ss_pred             CCceEEEEEe-CCchhHHHHHHHHHHhCCeEEEEEEEEee--ecCc-eEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHc
Q 015208          242 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRR--QRGN-CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  317 (411)
Q Consensus       242 ~~~tvi~v~~-~DRpGLL~~i~~~l~~~g~~i~~a~i~~~--t~g~-~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~  317 (411)
                      ++.+.|++.+ +|+||++++|..+|++.|+||.  -|...  .... ...-.|.+..+     +.+...++...+...+.
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVD--mI~Qs~s~~~~~~~~~sftv~~~-----d~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNID--MVLQNVSKVEDGKTDITFTCSRD-----VGPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCC--CEECCCCC--CCEEEEEEEEEGG-----GHHHHHHHHHTTHHHHC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceE--EEeeccccccccceEEEEecchh-----hHHHHHHHHHHHHhhhc
Confidence            4667888875 8999999999999999999998  44311  1112 22323554421     11122222222223332


Q ss_pred             CCceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          318 QPLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       318 ~~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      . ..+.+. ..       -..+.++|.   .+||+-..+-++|++.||||.-..++
T Consensus       106 ~-~~v~~~-~~-------iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstS  152 (200)
T 4go7_X          106 F-SQLLYD-DH-------IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS  152 (200)
T ss_dssp             C-SEEEEE-CC-------EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred             e-eeEEEe-cC-------eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEcc
Confidence            1 122221 11       126778776   79999999999999999999988866

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.25  E-value=0.0074  Score=54.64  Aligned_cols=38  Identities=13%  Similarity=-0.039  Sum_probs=30.6

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccc
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM  373 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~  373 (411)
                      +..+.+.+.||||+|++|+.+|++.++||..++..++.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            34789999999999999999999999999999998544

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.13  E-value=0.014  Score=52.74  Aligned_cols=49  Identities=20%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCC----CCeEEEEEEEE
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVT  157 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~----~~~~~d~F~V~  157 (411)
                      ...|.|.+.||||+|++|+.+|++++.||...+..+..    ++.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            46789999999999999999999999999999998855    56665555553

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.93  E-value=0.51  Score=47.09  Aligned_cols=108  Identities=22%  Similarity=0.238  Sum_probs=72.7

Q ss_pred             ceEEEEEE-ecCcccHHHHHHHHHHhCCceEEEEEEEeCC--CCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccc
Q 015208          108 DVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTP--DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  184 (411)
Q Consensus       108 ~~t~i~v~-~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~--~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~  184 (411)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||......|..  .|...-.|.|...+     .   ++..+.|.+ +..+.
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~-----~---~~a~~~l~~-~~~~~  333 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD-----G---RRAMEILKK-LQVQG  333 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT-----H---HHHHHHHHH-HHTTT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh-----H---HHHHHHHHH-HHHHc
Confidence            45567777 5899999999999999999999765444432  35445567774421     2   222233333 21110


Q ss_pred             cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC---CchhHHHHH
Q 015208          185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI  261 (411)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i  261 (411)
                                            .                       ...|.++    .+..+++|.|.   ++||++..+
T Consensus       334 ----------------------~-----------------------~~~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~  364 (421)
T 3ab4_A          334 ----------------------N-----------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTAEF  364 (421)
T ss_dssp             ----------------------T-----------------------CSEEEEE----CCEEEEEEECGGGTSCTTHHHHH
T ss_pred             ----------------------C-----------------------CceEEEe----CCeEEEEEEccCcccCccHHHHH
Confidence                                  0                       0124443    35678899985   899999999


Q ss_pred             HHHHHhCCeEEE
Q 015208          262 MRTLKDYNIQVS  273 (411)
Q Consensus       262 ~~~l~~~g~~i~  273 (411)
                      ..+|.+.|+||.
T Consensus       365 f~aL~~~~InI~  376 (421)
T 3ab4_A          365 MEALRDVNVNIE  376 (421)
T ss_dssp             HHHHHHTTCCCC
T ss_pred             HHHHHHCCCCEE
Confidence            999999999998

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.85  E-value=0.031  Score=48.33  Aligned_cols=57  Identities=14%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             EEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHH
Q 015208          246 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  312 (411)
Q Consensus       246 vi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L  312 (411)
                      -|+|.|.||+|||.+|+++|+++++||....+.  +.|.     +++...   ..+.+.+..|...+
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~--~~g~-----i~~~~~---~~~~~~~~~L~~~l   58 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PIGR-----IYLNFA---ELEFESFSSLMAEI   58 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEE--TTTE-----EEEEEC---CCCHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEe--cCCE-----EEEEEE---eCCHHHHHHHHHHH
Confidence            378999999999999999999999999988886  4432     344422   22345666666665

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.81  E-value=0.048  Score=48.53  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-E-cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcce-eee
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS-T-DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASV-VLY   96 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~-t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~-~~~   96 (411)
                      ...+.|+..|+||.|++++++|+..|+||.+-.+. + +....-.++.|..++ ...+++.+.|.+..+    ... ..+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e-~~ieqL~kQL~KLid----VikV~dl  103 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD-KTIEQIEKQAYKLVE----VVKVTPI  103 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT-THHHHHHHHHTTSTT----EEEEEEC
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH-HHHHHHHHHhcCcCc----eEEEEEe
Confidence            46889999999999999999999999999988885 4 534354566776432 244555555555332    100 001


Q ss_pred             ecccccCCCCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEE
Q 015208           97 YRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV  140 (411)
Q Consensus        97 ~~~~~~~~~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A  140 (411)
                      ... -.+........|.|.+...   -.+|.+.....+.+|.+.
T Consensus       104 ~~~-~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv  143 (193)
T 2fgc_A          104 DPL-PENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDV  143 (193)
T ss_dssp             CSS-GGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred             cCC-CCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence            000 0011222456777766443   677777777788888653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.71  E-value=0.045  Score=47.25  Aligned_cols=59  Identities=15%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHH
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT  178 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~  178 (411)
                      .|+|.+.||+|++++|+++|+.+++||..+.+.+ . |.    +++.-+.   .+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~-~-g~----i~~~~~~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP-I-GR----IYLNFAE---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEET-T-TE----EEEEECC---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEec-C-CE----EEEEEEe---CCHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999976 3 54    3343331   234556666665555

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.47  E-value=0.021  Score=51.36  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             CCcEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEE---cCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcce
Q 015208           18 GDPCVITVN-CPDKTGLGCDLCRIILFFGLSIVRGDVST---DGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASV   93 (411)
Q Consensus        18 ~~~~~V~v~-~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t---dg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~   93 (411)
                      .+...|++. .+|+||+.+++.+.|++.|+||-=--.+.   +....-..|.+....   .+...+.|++.... ..   
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---~~~~~~~l~~~~~~-~~---  105 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---GPAAVEKLDSLRNE-IG---  105 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---HHHHHHHHHTTHHH-HC---
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---HHHHHHHHHHHHhh-hc---
Confidence            356777776 59999999999999999999987433321   233244567776422   22232333332110 00   


Q ss_pred             eeeecccccCCCCCceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEE
Q 015208           94 VLYYRAEMQAPKPSDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKV  140 (411)
Q Consensus        94 ~~~~~~~~~~~~~~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A  140 (411)
                        +...    ....+...|.+++   +..||+.+++..+|++.|+||..-
T Consensus       106 --~~~v----~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          106 --FSQL----LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             --CSEE----EEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             --eeeE----EEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence              0000    1223567788877   678999999999999999999743

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.40  E-value=0.15  Score=50.90  Aligned_cols=111  Identities=18%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             CCceEEEEE-eCCchhHHHHHHHHHHhCCeEEEEEEEEeeec--CceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~-~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~--g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|+|. -+|+||.+++|...|+++|+||..-..++ ..  .+...=.|++..     .+.++   ..+.|.+ +..
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~-s~~~~g~~~isf~v~~-----~~~~~---a~~~l~~-~~~  331 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV-FSVEDGTTDITFTCPR-----SDGRR---AMEILKK-LQV  331 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC-CC--CCEEEEEEEEET-----TTHHH---HHHHHHH-HHT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC-ccccCCcceEEEEEec-----hhHHH---HHHHHHH-HHH
Confidence            356788888 58999999999999999999998443221 11  112222356652     12222   2233322 222


Q ss_pred             Cc---eEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          319 PL---RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       319 ~~---~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      .+   .+.+. ..       ...+.|+|.   ++||+...+..+|++.||||.-..++
T Consensus       332 ~~~~~~v~~~-~~-------~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S  381 (421)
T 3ab4_A          332 QGNWTNVLYD-DQ-------VGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS  381 (421)
T ss_dssp             TTTCSEEEEE-CC-------EEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             HcCCceEEEe-CC-------eEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcC
Confidence            21   22221 11       226888886   79999999999999999999866544

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.35  E-value=0.092  Score=49.70  Aligned_cols=63  Identities=11%  Similarity=0.046  Sum_probs=45.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          339 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       339 ~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      +-+.-.|+||-|+++-..|+.+|||+.++++.  ..+++.| -|.|||.- .|..-+++  ..++.+++
T Consensus       203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESR--P~~~~~~-~Y~FfvD~-eg~~~d~~v~~aL~~L~~  267 (283)
T 2qmx_A          203 IVFALPNEQGSLFRALATFALRGIDLTKIESR--PSRKKAF-EYLFYADF-IGHREDQNVHNALENLRE  267 (283)
T ss_dssp             EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEE--ECSSSTT-EEEEEEEE-ESCTTSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCchHHHHHHHHHHcCCCeeEEEee--EcCCCCc-ceEEEEEE-ecCCCcHHHHHHHHHHHH
Confidence            33344599999999999999999999999998  5555666 45599874 56655544  13444443

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=94.00  E-value=0.16  Score=51.19  Aligned_cols=108  Identities=13%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcC
Q 015208          242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  318 (411)
Q Consensus       242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~  318 (411)
                      ++.+.|++.+   .+.||++++|..+|+++|++|.  -|++  .....  .|.+..+.  +.  ...+++.+.|...+. 
T Consensus       296 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd--~i~~--~~~~i--s~~V~~~d--~~--~~~~~~~~el~~~~~-  364 (446)
T 3tvi_A          296 KNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFE--HMPS--GVDSV--SLVIEDCK--LD--GKCDKIIEEIKKQCN-  364 (446)
T ss_dssp             EEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEE--EBCE--ETTEE--EEEEEHHH--HT--TTHHHHHHHHHHHSC-
T ss_pred             CCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEE--EEec--CCCEE--EEEEecch--HH--HHHHHHHHHHHHhcC-
Confidence            3567899987   6999999999999999999998  3431  12222  36665210  11  023344444444332 


Q ss_pred             CceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208          319 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  368 (411)
Q Consensus       319 ~~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~  368 (411)
                      ...+.+...        -..+.++|.   .+||+...+..+|++.||||.-..
T Consensus       365 ~~~v~v~~~--------vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          365 PDSIEIHPN--------MALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             CSEEEEEEE--------EEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEeCC--------eEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence            122322111        227888887   599999999999999999998887

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=93.86  E-value=0.13  Score=49.81  Aligned_cols=49  Identities=14%  Similarity=0.089  Sum_probs=40.2

Q ss_pred             CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh
Q 015208          345 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN  397 (411)
Q Consensus       345 DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~  397 (411)
                      |+||-|+++-..|+.+|||+.++++.  ..+++.|+ |.|||. ..|..-+++
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESR--P~~~~~~~-Y~FfiD-~eg~~~d~~  265 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISR--PIKGRTGT-YSFIVT-LDAAPWEER  265 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEE--EETTEEEE-EEEEEE-ESSCTTSHH
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEee--ECCCCCcc-EEEEEE-EeCCcCCHH
Confidence            79999999999999999999999998  55566664 559976 567766644

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.79  E-value=0.068  Score=53.24  Aligned_cols=61  Identities=8%  Similarity=0.026  Sum_probs=47.2

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCC-CCChhhHHHHHHH
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL-SVPRNKIEEGVWK  405 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~-~~~~~~~~~~~~~  405 (411)
                      ..+-+.-.|+||++..|+.+|.++|+||..+...  +.|+.+     +.+.+.++. +++.+ +++.+++
T Consensus       332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~--r~g~~A-----~~vidvD~~~~~~~~-~l~~l~~  393 (404)
T 1sc6_A          332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ--TSAQMG-----YVVIDIEADEDVAEK-ALQAMKA  393 (404)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE--ECSSEE-----EEEEEEECCHHHHHH-HHHHHHT
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc--CCCCEE-----EEEEEcCCCCCCCHH-HHHHHhc
Confidence            3678889999999999999999999999999999  577777     444444443 14445 7777765

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.69  E-value=0.15  Score=48.97  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             eEEEEeC-CCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHH
Q 015208          338 PVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~-DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~  405 (411)
                      ++-+.-. |+||-|+++-..|+.+|||+.++++.  ..+++.|+ |.|||.- .|..-+++  ..++.|++
T Consensus       203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESR--P~~~~~~~-Y~FfiD~-eg~~~d~~v~~aL~~L~~  269 (313)
T 3mwb_A          203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESR--PTGQYLGH-YFFSIDA-DGHATDSRVADALAGLHR  269 (313)
T ss_dssp             EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEE--ECSSSTTS-EEEEEEE-ESCTTSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEe--ecCCCCcc-EEEEEEE-eCCCCcHHHHHHHHHHHH
Confidence            4455554 99999999999999999999999997  55555564 5599874 56554543  14445544

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.54  E-value=0.23  Score=46.52  Aligned_cols=49  Identities=10%  Similarity=0.176  Sum_probs=39.7

Q ss_pred             eEEEEe---CCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcC
Q 015208          338 PVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  389 (411)
Q Consensus       338 ~~~v~~---~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~  389 (411)
                      ++-+.-   .|+||-|+++-..|+.+|||+.++++.  ..+++.| -|.|||.-.
T Consensus       188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESR--P~~~~~~-~Y~FfiD~e  239 (267)
T 2qmw_A          188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESR--PLKTQLG-MYRFFVQAD  239 (267)
T ss_dssp             EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEE--ECSSSTT-CEEEEEEES
T ss_pred             EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEe--ecCCCCc-cEEEEEEEe
Confidence            444555   799999999999999999999999998  5555656 455999864

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.53  E-value=0.19  Score=51.77  Aligned_cols=62  Identities=18%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      +.+-+.-.||||++..|+..|.++||||..+.+.|...|+.+  +-.+.+.    .+++.+ +++.+++
T Consensus       455 ~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a--~~~i~vd----~~~~~~-~l~~l~~  516 (529)
T 1ygy_A          455 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGA--TILLRLD----QDVPDD-VRTAIAA  516 (529)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCE--EEEEEES----SCCCHH-HHHHHHH
T ss_pred             cEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEE--EEEEEEC----CCCCHH-HHHHHhc
Confidence            456677889999999999999999999999999976677777  4433333    346666 6777775

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.54  E-value=0.3  Score=48.55  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=44.4

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEc
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD  158 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~  158 (411)
                      +...|.+.-.|+||.+..|+.+|+++|+||...+..+ .++.++-++.|..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CCCEEEEEEEcCC
Confidence            4567888999999999999999999999999999998 8898888887744

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=91.47  E-value=0.32  Score=41.49  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             CceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCC
Q 015208          243 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  319 (411)
Q Consensus       243 ~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~  319 (411)
                      +.+.|++.+   +|+||.++++..+|+++|++|.  -|+  +-....  .|++...       +.++++.+.    +...
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~--~s~~~I--sf~v~~~-------~~~~~il~~----l~~~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVA--TSEVGV--SLTIDND-------KNLPDIVRA----LSDI   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEE--CCSSEE--EEEESCC-------TTHHHHHHH----HTTT
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEE--ecCCEE--EEEECCh-------HHHHHHHHH----Hhcc
Confidence            567888885   5899999999999999999997  444  222222  3666421       122333222    3322


Q ss_pred             ceEEEeccCCCccccccceEEEEeC---CCCchHHHHHHHHHhCCeeEEEEE
Q 015208          320 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  368 (411)
Q Consensus       320 ~~~~i~~~~~~~~~~~~~~~~v~~~---DRpGil~dvt~~l~~~gi~I~~~~  368 (411)
                      ..+.+...        -..+.++|.   ++||+...+...|+  |+||.-..
T Consensus        80 ~~v~~~~~--------~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           80 GDVTVDKD--------MVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             EEEEEEEE--------EEEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             CeEEEeCC--------eEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence            22322211        126788886   68999999999999  89988776

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=91.27  E-value=0.42  Score=48.94  Aligned_cols=110  Identities=12%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCC-CcCC-CHHHHHHHHHHHHHHH
Q 015208          242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG-KKIV-DPSKQNGLSSRLWMEL  316 (411)
Q Consensus       242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g-~~~~-~~~~~~~l~~~L~~~l  316 (411)
                      ++.+.|+|.+   .++||++.+|..+|+++|++|.  -|++  --..+  .|++.... .+.. ..+.++++.    ..+
T Consensus       339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd--~I~s--se~si--s~~v~~~~~~~~~~~~~~l~~~~----~el  408 (510)
T 2cdq_A          339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVD--VVAT--SEVSI--SLTLDPSKLWSRELIQQELDHVV----EEL  408 (510)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEE--EEEE--ETTEE--EEEECCGGGSSSCCCHHHHHHHH----HHH
T ss_pred             CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEE--EEEe--CCCeE--EEEEechHhhhhhHHHHHHHHHH----HHh
Confidence            3678899997   6899999999999999999999  4442  12222  36665211 1100 012233332    333


Q ss_pred             cCCceEEEeccCCCccccccceEEEEeC--CCCchHHHHHHHHHhCCeeEEEEEe
Q 015208          317 LQPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEI  369 (411)
Q Consensus       317 ~~~~~~~i~~~~~~~~~~~~~~~~v~~~--DRpGil~dvt~~l~~~gi~I~~~~~  369 (411)
                      ...-.+.+...        -..+.++|.  .+||+...+..+|++.||||.-..-
T Consensus       409 ~~~~~v~~~~~--------~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsq  455 (510)
T 2cdq_A          409 EKIAVVNLLKG--------RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQ  455 (510)
T ss_dssp             TTTSEEEEEEE--------EEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred             CCCCeEEEeCC--------cEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEe
Confidence            33223333211        126888888  8899999999999999999988763

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.69  E-value=1.1  Score=46.03  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=48.8

Q ss_pred             CCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEEEcCCCcCCCHhHHHHHH
Q 015208          106 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTY  173 (411)
Q Consensus       106 ~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V~~~~~~~~~~~~~~~l~  173 (411)
                      ...+..+.+.-+|+||.+.+++..|.++|+||.+.++... .++.++-++.+.++    ++++.+++|+
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~~~~~l~~l~  515 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----VPDDVRTAIA  515 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----CCHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----CCHHHHHHHh
Confidence            3456778888999999999999999999999999999753 46777777777332    3455555553

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=90.38  E-value=1.4  Score=44.28  Aligned_cols=108  Identities=13%  Similarity=0.203  Sum_probs=71.3

Q ss_pred             cEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCc-cHHHHHHHHHhhCCCCCCcceee
Q 015208           20 PCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQT-RWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        20 ~~~V~v~~---~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~-~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      .+.|+|.+   ++.||+.+++.+.|+++|+||.--  ++ +. .-..|.|...+-. ....+.+.|.+.+.. ...    
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~~-~~is~~V~~~d~~~~~~~~~~el~~~~~~-~~v----  368 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-GV-DSVSLVIEDCKLDGKCDKIIEEIKKQCNP-DSI----  368 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-ET-TEEEEEEEHHHHTTTHHHHHHHHHHHSCC-SEE----
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-CC-CEEEEEEecchHHHHHHHHHHHHHHhcCC-CcE----
Confidence            45677775   689999999999999999998632  22 22 1245666643211 233444555554421 000    


Q ss_pred             eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                              ....+...|.|++.   ..||+.+++..+|++.|+||....-.|
T Consensus       369 --------~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgt  412 (446)
T 3tvi_A          369 --------EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGS  412 (446)
T ss_dssp             --------EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             --------EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecC
Confidence                    11236789999985   589999999999999999997544334

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.12  E-value=1.4  Score=41.41  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             ceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeec-CceEEEEEEEecCCCc
Q 015208          244 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKK  298 (411)
Q Consensus       244 ~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~-g~~~~d~F~v~~~g~~  298 (411)
                      .|.|-+.-+|+||-|+++...|+.+|+|+.  +|.+-.. +....=.||++.+|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLT--KIESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTEEEEEEEEESCT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCee--EEEeeEcCCCCcceEEEEEEecCC
Confidence            456666668999999999999999999998  5553223 3334556899977764

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=89.69  E-value=2.8  Score=40.27  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CchhHHHHHHHHHHhCCeEEEEEEEEeeecCce-EEEEEEEecCCCc
Q 015208          253 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKK  298 (411)
Q Consensus       253 DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~-~~d~F~v~~~g~~  298 (411)
                      |+||-|+++...|+.+|+|+.  +|.+-...+. ..=+||++.+|..
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~  261 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMT--SFISRPIKGRTGTYSFIVTLDAAP  261 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEE--EEEEEEETTEEEEEEEEEEESSCT
T ss_pred             CCCCHHHHHHHHHHHCCcceE--EEEeeECCCCCccEEEEEEEeCCc
Confidence            799999999999999999998  5554233333 4445788887764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.52  E-value=2.1  Score=42.59  Aligned_cols=51  Identities=12%  Similarity=0.042  Sum_probs=43.7

Q ss_pred             CCCceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEE
Q 015208          105 KPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV  156 (411)
Q Consensus       105 ~~~~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V  156 (411)
                      ...+...|.+.-.|.||.|..|..+|+++|+||....-.| .++.++-+.-|
T Consensus       339 ~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~-~~~~~y~~~d~  389 (416)
T 3k5p_A          339 PRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT-DGEVGYLVMEA  389 (416)
T ss_dssp             CCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE-CSSCEEEEEEE
T ss_pred             CCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC-CCceEEEEEEe
Confidence            3446789999999999999999999999999999888777 77877666655

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=87.56  E-value=1.4  Score=43.79  Aligned_cols=65  Identities=14%  Similarity=0.119  Sum_probs=47.3

Q ss_pred             CCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        18 ~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      .+..+|+++=+|.||.+.+|..+|+++|+||.+-...|.|.+..-+.-|.+- +...+.+.+.|++
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~-~~~~~~~~~~l~~  405 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGV-GEASDAVLQEIRE  405 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCC-HHHHHHHHHHHHT
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCC-CCCcHHHHHHHHh
Confidence            3578999999999999999999999999999988877877655444444311 1223344455543

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=84.38  E-value=2.8  Score=39.11  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=38.2

Q ss_pred             CCceEEEEEe---CCchhHHHHHHHHHHhCCeEEEEEEEEeeec-CceEEEEEEEecC
Q 015208          242 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQAD  295 (411)
Q Consensus       242 ~~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~-g~~~~d~F~v~~~  295 (411)
                      ...|.|-+..   +|+||-|+++...|+.+|+|+.  +|.+-.. +....=.||++.+
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~e  239 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQAD  239 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEES
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCee--EEEEeecCCCCccEEEEEEEe
Confidence            3456666666   8999999999999999999998  5553222 3334456899866

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=83.63  E-value=2.7  Score=40.17  Aligned_cols=55  Identities=11%  Similarity=0.124  Sum_probs=38.7

Q ss_pred             CceEEEEEEec-CcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCc
Q 015208          107 SDVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL  162 (411)
Q Consensus       107 ~~~t~i~v~~~-Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~  162 (411)
                      .+.|.|.+..+ |+||-|+++.+.|+.+|+|...-.-.-..++...-.|||. -+|.
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~eg~  254 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSID-ADGH  254 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEE-EESC
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEE-EeCC
Confidence            45677777775 9999999999999999999965554433333223467774 3344

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=83.30  E-value=2.8  Score=35.44  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             CcEEEEEEc---CCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhhCCCCCCcceee
Q 015208           19 DPCVITVNC---PDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGACPSCSSASVVL   95 (411)
Q Consensus        19 ~~~~V~v~~---~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~l~~~~~~~~~~   95 (411)
                      +...|+|.+   ++.||..+++.+.|+++|+||.--  ++...  --.|.|.+..  ..+.+.+.|.+    ....    
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I--~~s~~--~Isf~v~~~~--~~~~il~~l~~----~~~v----   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMV--ATSEV--GVSLTIDNDK--NLPDIVRALSD----IGDV----   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCE--ECCSS--EEEEEESCCT--THHHHHHHHTT----TEEE----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEE--EecCC--EEEEEECChH--HHHHHHHHHhc----cCeE----
Confidence            567788874   578899999999999999998532  22221  2456665432  34444333332    0000    


Q ss_pred             eecccccCCCCCceEEEEEEec---CcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208           96 YYRAEMQAPKPSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus        96 ~~~~~~~~~~~~~~t~i~v~~~---Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                              ....+...|.+++.   +.||..+++..+|+  |+||....-.+
T Consensus        83 --------~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~  124 (157)
T 3mah_A           83 --------TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGG  124 (157)
T ss_dssp             --------EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECS
T ss_pred             --------EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCC
Confidence                    11235678888874   68999999999999  99997544324

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=83.02  E-value=19  Score=36.54  Aligned_cols=107  Identities=14%  Similarity=0.238  Sum_probs=66.8

Q ss_pred             ceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcccc
Q 015208          108 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM  184 (411)
Q Consensus       108 ~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~~~  184 (411)
                      +.+.|+|.+   .+++|++++|...|+++|+||...  .|...   --.|.|...+....+.     +++.|.+.+..  
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~---sis~~v~~~~~~~~~~-----~~~~l~~~~~e--  407 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEV---SISLTLDPSKLWSREL-----IQQELDHVVEE--  407 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETT---EEEEEECCGGGSSSCC-----CHHHHHHHHHH--
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCC---eEEEEEechHhhhhhH-----HHHHHHHHHHH--
Confidence            566788886   678999999999999999999755  34222   1346663322110000     11112221110  


Q ss_pred             cccccccccceeeeccCcCCCChhHHHhhhccCCCCCCCCCCCCCCCcEEEEecCCCCCceEEEEEeC--CchhHHHHHH
Q 015208          185 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYDIM  262 (411)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~--DRpGLL~~i~  262 (411)
                                               +.+                  -..|.++    ++..+|.+.|.  ..||+...+.
T Consensus       408 -------------------------l~~------------------~~~v~~~----~~~a~VsiVG~m~~~~Gvaa~~f  440 (510)
T 2cdq_A          408 -------------------------LEK------------------IAVVNLL----KGRAIISLIGNVQHSSLILERAF  440 (510)
T ss_dssp             -------------------------HTT------------------TSEEEEE----EEEEEEEEEECGGGHHHHHHHHH
T ss_pred             -------------------------hCC------------------CCeEEEe----CCcEEEEEEEECCCChhHHHHHH
Confidence                                     000                  0124443    24578888887  8899999999


Q ss_pred             HHHHhCCeEEE
Q 015208          263 RTLKDYNIQVS  273 (411)
Q Consensus       263 ~~l~~~g~~i~  273 (411)
                      .+|.+.|+||.
T Consensus       441 ~aL~~~~InI~  451 (510)
T 2cdq_A          441 HVLYTKGVNVQ  451 (510)
T ss_dssp             HHHHHHTCCCS
T ss_pred             HHHHHCCCCEE
Confidence            99999999998

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=80.77  E-value=1.2  Score=44.63  Aligned_cols=37  Identities=30%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             cccceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEec
Q 015208          334 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  370 (411)
Q Consensus       334 ~~~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~  370 (411)
                      ...|.+.+...|+||++.+|+.+|.++||||.++--.
T Consensus       357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~  393 (444)
T 3mtj_A          357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQK  393 (444)
T ss_dssp             EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeec
Confidence            3567888999999999999999999999999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.82
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.78
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.74
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.54
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.45
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.18
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.03
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.6
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.57
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.57
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.55
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.49
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.35
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.23
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.2
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.16
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.15
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.1
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.09
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.02
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.83
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.72
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.69
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.3
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.22
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.57
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.65
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	82.78
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.72
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.39
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	81.96
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	81.55

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.82  E-value=8.2e-09  Score=79.13  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=56.6

Q ss_pred             CCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCce
Q 015208          242 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  321 (411)
Q Consensus       242 ~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~  321 (411)
                      .++++|++.|+||||++++++++|+++||||.+++..  +.++.+.-.+.+..  .    ++.+++|++.|.. +.+.+.
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~~~~~~v~~--~----~~~~~~l~~~L~~-l~~~l~   73 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEFTLLMLISG--S----PSNITRVETTLPL-LGQQHD   73 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEE--C----HHHHHHHHHHHHH-HHHHHT
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCeeEEEEEEEc--C----cccHHHHHHHHHH-HHHHhC
Confidence            4678999999999999999999999999999999998  68888875555552  1    3467888888744 444333


Q ss_pred             E
Q 015208          322 V  322 (411)
Q Consensus       322 ~  322 (411)
                      +
T Consensus        74 l   74 (86)
T d1u8sa1          74 L   74 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.78  E-value=1.1e-08  Score=78.30  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=53.0

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           17 EGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        17 ~~~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      ...++.|+++|+||||++++++++|+++||||.++++++.|..+.-++.|.-+. .+.+++++.|++
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~L~~   67 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVETTLPL   67 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHHHHHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCc-ccHHHHHHHHHH
Confidence            346789999999999999999999999999999999998666688888888543 234455555544

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.74  E-value=3.5e-08  Score=74.95  Aligned_cols=64  Identities=20%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHhh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMGA   84 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~~   84 (411)
                      ..|++.|+||||+.++++++|+++|+||.+.+..+++..|.-.+.+..+.+.+.+.+++.|+..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999998855557778888877766677787777654

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.54  E-value=1.6e-07  Score=71.10  Aligned_cols=63  Identities=10%  Similarity=0.175  Sum_probs=48.2

Q ss_pred             eEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHH
Q 015208          245 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  314 (411)
Q Consensus       245 tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~  314 (411)
                      ++|++.|+||||++++++.+|+++|+||.+..-.  +.++.+.-.+.+...+..     ..++|+++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~--~~~~~f~~~~~v~~~~~~-----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT--VLDEYFTMMAVVSSDEKQ-----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEESSCC-----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeE--EeCCEEEEEEEEEEecCC-----CHHHHHHHHHH
Confidence            6899999999999999999999999999988876  567777655555532221     24667777643

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.45  E-value=2.4e-07  Score=71.71  Aligned_cols=71  Identities=8%  Similarity=0.029  Sum_probs=46.9

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccc---cC-cc-eeeEEEEEEEcCCCCCCC--hhhHHHHHHHHhc
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM---IG-DR-EWEVYRVLLDEGDGLSVP--RNKIEEGVWKLLM  408 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~---~g-~~-~~~~~~f~v~~~~g~~~~--~~~~~~~~~~~~~  408 (411)
                      +..+.|.|.||||||++||++|+++|+||.++++....   .+ .. -| .-++-+..|++..+.  ++ -++.+.+++.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f-~~~~~~~~p~~~~~~~l~~-~l~~l~~~l~   83 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQF-HIAISARVDSGCNLMQLQE-EFDALCTALD   83 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEE-EEEEEEEECTTSCHHHHHH-HHHHHHHHHT
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccE-EEEEEEEcCccccHHHHHH-HHHHHHHHce
Confidence            44677889999999999999999999999999987201   11 11 12 122344457665544  33 4666766654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=5.6e-06  Score=63.73  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=51.7

Q ss_pred             cEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE------cC--cEEEEEEEEEcCCCccHHHHHHHHHhhC
Q 015208           20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST------DG--KWCYIVFWVIGDSQTRWGLLKKRLMGAC   85 (411)
Q Consensus        20 ~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t------dg--~~~~d~f~V~~~~g~~~~~l~~~L~~~l   85 (411)
                      .+.|.|.|+|||||+++|+++|+++|+||.+.+..+      ++  ..|.-.+.+.-|.+.+.+.+++.|+...
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~   79 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALC   79 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHH
Confidence            468899999999999999999999999999988754      11  1255556667677777778888887764

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=9.5e-06  Score=60.32  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             cceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHH
Q 015208          336 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL  406 (411)
Q Consensus       336 ~~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~  406 (411)
                      ++.+-+.-.||||++..|+.+|+++|+||..+...|...|+.+  .-  .+. . ..++..+ +++.+++.
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a--~~--vi~-v-D~~~~~~-vl~~I~~~   66 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGA--TI--LLR-L-DQDVPDD-VRTAIAAA   66 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCE--EE--EEE-E-SSCCCHH-HHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeE--EE--EEE-c-CCCccHH-HHHHHHcC
Confidence            4578888999999999999999999999999998865677777  22  222 2 3467777 78888875

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.60  E-value=0.00012  Score=53.01  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=41.4

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEE
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT  157 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~  157 (411)
                      +|.|..+|+||-|++++++|.+.|+||+...++. .+++.+-+|.+.
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~-~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEc-CCCcEEEEEEEC
Confidence            4778899999999999999999999999999998 568888888883

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=0.00032  Score=51.70  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             ceEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeC-CCCeEEEEEEE
Q 015208          108 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV  156 (411)
Q Consensus       108 ~~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~-~~~~~~d~F~V  156 (411)
                      +.+.+.+.-.|+||.+++|+.+|+++|+||..+++.+. .+|.++-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            34677888999999999999999999999999998653 46677766665

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.57  E-value=7.9e-05  Score=54.97  Aligned_cols=50  Identities=18%  Similarity=0.204  Sum_probs=36.7

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeE--EEEEEEEcC
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV--MDLFFVTDT  159 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~--~d~F~V~~~  159 (411)
                      .-|.|.+.||||+|++|+.+|+++++||.+....+..+|.+  .-.|++.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            46889999999999999999999999999999887666654  335555443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.55  E-value=6.9e-05  Score=55.32  Aligned_cols=64  Identities=19%  Similarity=0.090  Sum_probs=42.4

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHH
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  405 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~  405 (411)
                      .+.+.+.||||+|++|+.+|++.|+||...+...+..|.... ...+++.+..+ .+  +.+++.+++
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~-~~~i~v~~~~~-~l--~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEG-KALIYFEIEGG-DF--EKILERVKT   66 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTT-EEEEEEEECSS-CH--HHHHHHHHT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEE-EEEEEEEcCcc-cH--HHHHHHHHc
Confidence            578999999999999999999999999999877434543332 44577765432 22  325666654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.49  E-value=0.00029  Score=50.99  Aligned_cols=57  Identities=14%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEcCCCccHHHHHHHHHh
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIGDSQTRWGLLKKRLMG   83 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~~~g~~~~~l~~~L~~   83 (411)
                      +|.|..+|+||-|++++++|.++|.||...+.+..+...+.+|.|.++     +...+.|++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~-----~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNM-----DKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCH-----HHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCH-----HHHHHHHHH
Confidence            467888999999999999999999999999998766668888988743     334444554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.35  E-value=0.00017  Score=52.05  Aligned_cols=46  Identities=13%  Similarity=0.105  Sum_probs=39.7

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEE
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD  387 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~  387 (411)
                      .++|.-.||||.|.+++.+|+++|+||..+.+.  ...+.+  +.+|-+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~--~t~~~~--i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIA--ENADFG--ILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE--ECSSCE--EEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEe--ecCCCC--EEEEEEC
Confidence            588999999999999999999999999999998  555566  7777554

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00078  Score=49.15  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=47.5

Q ss_pred             EEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          111 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       111 ~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      .+.+...|+||+|+++++.|+..|+||.+..+.-+.+..+. .|.+... |   +++.++++...|.+..
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iS-R~tivv~-~---~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS-RMTIQTV-G---DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEE-EEEEEEE-S---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCee-EEEEEEE-C---CHHHHHHHHHHHhCCC
Confidence            57889999999999999999999999999999854544333 2323222 1   3556777777777744

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00069  Score=49.71  Aligned_cols=65  Identities=11%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEE-EEEEEcCCCcCCCHhHHHHHHHHHHHH
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLKTI  179 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d-~F~V~~~~~~~~~~~~~~~l~~~L~~~  179 (411)
                      ...|.+...|+||+|++|++.|+..|+||.+..+..+.+..... ++.+ ..     +++..+++.+.|.+.
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g-----~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KG-----DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EE-----CTTHHHHHHHHHTTS
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-Ec-----CHHHHHHHHHHHhCC
Confidence            35788999999999999999999999999999987655443322 3333 22     233456666666553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.16  E-value=0.0012  Score=47.50  Aligned_cols=47  Identities=6%  Similarity=0.077  Sum_probs=38.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcCcEEEEEEEEEc
Q 015208           22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVIG   68 (411)
Q Consensus        22 ~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg~~~~d~f~V~~   68 (411)
                      ++.|+..||||.|++++++|++.|+||.+-.+...+...+-.|.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            68999999999999999999999999999888653322445666653

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.15  E-value=0.00068  Score=49.59  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             EEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEeCCC-CeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHH
Q 015208          110 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL  180 (411)
Q Consensus       110 t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~-~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L  180 (411)
                      ..|.+...|+||.|++|++.|+..|+||.+..+.-+.+ |..--++.+..      +++.++++...|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC------CHHHHHHHHHHHhCCc
Confidence            46788999999999999999999999999999985443 43333444422      2456777877777744

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00056  Score=49.94  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=45.5

Q ss_pred             eEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChhhHHHHHHHHhc
Q 015208          338 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  408 (411)
Q Consensus       338 ~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~~~~~~~~~~~~  408 (411)
                      .+.+.-.|+||+|..|+.+|+.+|+||.++.+.  ......  +.+|-+... |   +.+ .++++.+||.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~--~te~~~--iSR~tivv~-~---~~~-~i~qi~kQL~   64 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVA--PTDDPT--LSRMTIQTV-G---DEK-VLEQIEKQLH   64 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE--ECSCSS--EEEEEEEEE-S---CHH-HHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEc--ccCCCC--eeEEEEEEE-C---CHH-HHHHHHHHHh
Confidence            577888999999999999999999999999998  333344  566776642 3   223 4555555553

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.0018  Score=47.44  Aligned_cols=63  Identities=14%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE--cCcEEEEEEEEEcCCCccHHHHHHHHHhh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVST--DGKWCYIVFWVIGDSQTRWGLLKKRLMGA   84 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~t--dg~~~~d~f~V~~~~g~~~~~l~~~L~~~   84 (411)
                      ..+.++..|+||++++++++|+..|+||.+-.+..  +....=-++.+.. +....+++.+.|++.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g-~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-CTTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc-CHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999988853  5552323344432 223445555555543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0022  Score=47.58  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=34.9

Q ss_pred             CcEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEcC
Q 015208           19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDG   57 (411)
Q Consensus        19 ~~~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~tdg   57 (411)
                      +...+++.-.|+||.+++|+++|+++|+||.+....+.+
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~   48 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSA   48 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCC
Confidence            457888999999999999999999999999998887743

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.83  E-value=0.0016  Score=47.94  Aligned_cols=48  Identities=13%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             EEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCC
Q 015208          341 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  392 (411)
Q Consensus       341 v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~  392 (411)
                      +.-.|+||-|+++-..|+++|||+.++++.  ...+..| -|.|||.- +|.
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSR--P~~~~~~-~Y~F~id~-~g~   54 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESR--PLKTQLG-MYRFFVQA-DSA   54 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEE--ECSSSTT-CEEEEEEE-SCC
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEee--ecCCCCc-eEEEEEEE-ecC
Confidence            345699999999999999999999999998  5555555 45599986 564

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0089  Score=44.13  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             eEEEEEEecCcccHHHHHHHHHHhCCceEEEEEEEe
Q 015208          109 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST  144 (411)
Q Consensus       109 ~t~i~v~~~Dr~GLl~~i~~~L~~~glnI~~A~I~T  144 (411)
                      ...+.+.-.|+||.+++|+++|+++|+||.+....+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            467888899999999999999999999999988877

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.69  E-value=0.002  Score=46.99  Aligned_cols=63  Identities=16%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-E-cCcEEEEEEEEEcCCCccHHHHHHHHHhh
Q 015208           21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVS-T-DGKWCYIVFWVIGDSQTRWGLLKKRLMGA   84 (411)
Q Consensus        21 ~~V~v~~~Dr~Gl~~~i~~~L~~~glnI~~a~i~-t-dg~~~~d~f~V~~~~g~~~~~l~~~L~~~   84 (411)
                      ..+.++..|+||+++++++.|+..|+||.+-.+. + +....=-++.+...+ ...+++.+.|++.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~-~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD-EIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH-HHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH-HHHHHHHHHHhCC
Confidence            4678999999999999999999999999998885 3 444243445555322 3455666666654

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.0044  Score=47.26  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=40.6

Q ss_pred             CCCCceEEEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeee-cCceEEEEEEEecCCC
Q 015208          240 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGK  297 (411)
Q Consensus       240 ~~~~~tvi~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t-~g~~~~d~F~v~~~g~  297 (411)
                      ...+.|-|-+..+|+||-|+++...|+++|+|+.  +|.+-. .+....=.||++.+|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt--~IeSRP~~~~~~~Y~F~id~eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLT--HIESRPSRLNKDEYEFFTYLDKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTT--SEEEEECSSCTTEEEEEECBCGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEE--EEEeeccCCCCceEEEEEEcccC
Confidence            4455677778889999999999999999999986  443211 2333333589987775

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.22  E-value=0.0011  Score=50.77  Aligned_cols=66  Identities=14%  Similarity=-0.039  Sum_probs=47.8

Q ss_pred             ceEEEEeCCCCchHHHHHHHHHhCCeeEEEEEecccccCcceeeEEEEEEEcCCCCCCChh--hHHHHHHHHh
Q 015208          337 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRN--KIEEGVWKLL  407 (411)
Q Consensus       337 ~~~~v~~~DRpGil~dvt~~l~~~gi~I~~~~~~~~~~g~~~~~~~~f~v~~~~g~~~~~~--~~~~~~~~~~  407 (411)
                      .++-+.-.|+||.|+++-..|+++|||+.++++.  ...+..|+ |.|||. ..|. .+.+  .+++.+++..
T Consensus        17 tSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSR--P~~~~~~~-Y~F~id-~eg~-~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          17 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESR--PSRLNKDE-YEFFTY-LDKR-TKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEE--ECSSCTTE-EEEEEC-BCGG-GHHHHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEee--ccCCCCce-EEEEEE-cccC-ChHHHHHHHHHHHHhh
Confidence            3666677899999999999999999999999988  44445554 559997 4565 2333  2455555543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.57  E-value=0.018  Score=42.03  Aligned_cols=50  Identities=26%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             EEEEeCCchhHHHHHHHHHHhCCeEEEEEEEEeeec-CceEEEEEEEecCCCc
Q 015208          247 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKK  298 (411)
Q Consensus       247 i~v~~~DRpGLL~~i~~~l~~~g~~i~~a~i~~~t~-g~~~~d~F~v~~~g~~  298 (411)
                      +-+.-.|+||-|+++...|+++|+|+.  +|.+-.. +....=.||++.+|..
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt--~IeSRP~~~~~~~Y~F~id~~g~~   55 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQADSAI   55 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEESCCS
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEE--EEEeeecCCCCceEEEEEEEecCC
Confidence            334457999999999999999999998  5543222 3333335899977753

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.65  E-value=2.4  Score=28.93  Aligned_cols=28  Identities=14%  Similarity=0.364  Sum_probs=25.6

Q ss_pred             EEEEEe---CCchhHHHHHHHHHHhCCeEEE
Q 015208          246 LVQIVC---QDHKGLLYDIMRTLKDYNIQVS  273 (411)
Q Consensus       246 vi~v~~---~DRpGLL~~i~~~l~~~g~~i~  273 (411)
                      +|++.|   .++||+..++..+|.+.|+||.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~   33 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIK   33 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChH
Confidence            577777   6999999999999999999998

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.78  E-value=0.68  Score=33.97  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             CceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEE
Q 015208          107 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVK  141 (411)
Q Consensus       107 ~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~  141 (411)
                      .+.+.|+|.+   +++||+++++..+|+++|+||..-.
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            4678899987   4999999999999999999997543

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.72  E-value=2.6  Score=31.17  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=44.2

Q ss_pred             CceEEEEEEe---cCcccHHHHHHHHHHhCCceEEEEEEEeCCCCeEEEEEEEEcCCCcCCCHhHHHHHHHHHHHHHcc
Q 015208          107 SDVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN  182 (411)
Q Consensus       107 ~~~t~i~v~~---~Dr~GLl~~i~~~L~~~glnI~~A~I~T~~~~~~~d~F~V~~~~~~~~~~~~~~~l~~~L~~~L~~  182 (411)
                      .+...|++.+   +++||+.+++..+|+++|+||.--.-.+..   .--.|.|...        ..++..+.|.+.+..
T Consensus        13 ~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se---~~Isf~V~~~--------d~~~a~~~L~~~f~~   80 (100)
T d2hmfa3          13 KNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE---TNISLVVSEE--------DVDKALKALKREFGD   80 (100)
T ss_dssp             EEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT---CCEEEEECST--------THHHHHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc---ceEEEEEeHH--------HHHHHHHHHHHHHHh
Confidence            3567899988   689999999999999999999754433322   1234666332        244555666766643

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.39  E-value=1.6  Score=32.33  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             CceEEEEEe---CCchhHHHHHHHHHHhCCeEEEE
Q 015208          243 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY  274 (411)
Q Consensus       243 ~~tvi~v~~---~DRpGLL~~i~~~l~~~g~~i~~  274 (411)
                      +...|++.|   +++||++..+..+|++.|+||.-
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~m   48 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL   48 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHH
Confidence            568999998   69999999999999999999983

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.96  E-value=0.48  Score=34.85  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CceEEEEEeC---CchhHHHHHHHHHHhCCeEEEEE
Q 015208          243 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYG  275 (411)
Q Consensus       243 ~~tvi~v~~~---DRpGLL~~i~~~l~~~g~~i~~a  275 (411)
                      +.+.|++.|.   ++||+++.+..+|++.|+||.--
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~I   47 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV   47 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence            5689999985   99999999999999999999933

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.55  E-value=5  Score=29.16  Aligned_cols=62  Identities=8%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHhCCeEEEEEEEEeeecCceEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHcCCceEEEe
Q 015208          255 KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVV  325 (411)
Q Consensus       255 pGLL~~i~~~l~~~g~~i~~a~i~~~t~g~~~~d~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~i~  325 (411)
                      .-+++++++.+ +..+||..|.|.  ..++.....+++...|..   ++..++..+.|   -++.+.+.+.
T Consensus        31 ~Pvis~l~r~~-~v~vnIL~g~I~--~i~~~~~G~Liv~l~G~~---~~~i~~ai~~L---~~~~v~vEVi   92 (95)
T d3ceda1          31 EPIVSSLSTAY-DIKINILEANIK--NTKNGTVGFLVLHIPYIS---SVDFGKFEKEL---IERQVKMEVL   92 (95)
T ss_dssp             HHHHHHHHHHH-TCCCEEEEEEEE--EETTEEEEEEEEEESCCC---HHHHHHHHHHH---HHTTCEEEEE
T ss_pred             chHHHHHHHHh-CCceEEEEEEeE--EeCCeeEEEEEEEEecCC---HHHHHHHHHHH---HHcCCEEEEe
Confidence            45889999988 889999999998  677888888888765532   33334333333   3355555544