Citrus Sinensis ID: 015210

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MNKLKETYRDIVISRGSEEGEESTAKRSGEWTKVKHPPIETYWLFPPEKEDKAPSSSKGGIKSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEEVDTLGGNGGEPSEMVRTEEPHLLCKDVYLYSLSTDSQNLSGLMS
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHccHHHHcccEEEEccccHHHHHHHHHHccccccccccEEEEccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEccccccccccccccccccccc
cccccccEEEEEEEccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHcccEEEEEcccccEEEEEcHHHccHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHHcccEcccHHHccccccccccccHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccHcccccHcc
MNKLKETYRDIVIsrgseegeestakrsgewtkvkhppietywlfppekedkapssskggiksllnypikirdslkgigrgkSMQVVLqgardpkdeQLVQSFREMLLlegqlppkhndyhTLLRFLRmrdfdisksKEMFLNYLKWCADYGVDTILKEFKFEEFAEvkkfyphgyhgvdkfgrpvyieRIGMVDLNALLQVTTVERFIRHHVSEQEKtlsfrypscsiaakrhiastTSILdvtgvgmsnfskpARYLFMEILKIdsnyypetlHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNylsnlhelidpsnlpsflggnctcsdyggclfsdkgpwnnpeIKEVLQAVSATeevdtlggnggepsemvrteephllckdVYLYSlstdsqnlsglms
mnklketyrdivisrgseegeestakrsgewtkvkhppietywlfppekedkapssskggiksllnyPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLlegqlppkhnDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKkfyphgyhgvdKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVseqektlsfryPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATeevdtlggnggepsemvrTEEPHLLCKDVYLYslstdsqnlsglms
MNKLKETYRDIVISRGSEEGEESTAKRSGEWTKVKHPPIETYWLFPPEKEDKAPSSSKGGIKSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILkefkfeefaevkkfYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEEVDTLGGNGGEPSEMVRTEEPHLLCKDVYLYSLSTDSQNLSGLMS
***********************************HPPIETYWLF*****************SLLNYPIKIRDSLKGIGR*****VV************VQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAV*************************HLLCKDVYLYSL************
******T****V**********************************************************************************KDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQA**************************************************
MNKLKETYRDIVISR***************WTKVKHPPIETYWLFPPE**********GGIKSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEEVDTLGGNGGEPSEMVRTEEPHLLCKDVYLYSLSTDSQNLSGLMS
*****ETYRDIVISR*******************KHPPIETYWLFPPEKEDKAPSSSKGGIKSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEEVDTLG***************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNKLKETYRDIVISRGSEEGEESTAKRSGEWTKVKHPPIETYWLFPPEKEDKAPSSSKGGIKSLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEEVDTLGGNGGEPSEMVRTEEPHLLCKDVYLYSLSTDSQNLSGLMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q10137286 Sec14 cytosolic factor OS yes no 0.559 0.804 0.433 5e-51
P24280304 SEC14 cytosolic factor OS yes no 0.637 0.861 0.398 7e-49
P24859301 SEC14 cytosolic factor OS yes no 0.637 0.870 0.402 4e-48
P46250301 SEC14 cytosolic factor OS N/A no 0.627 0.857 0.400 2e-47
P53989302 SEC14 cytosolic factor OS yes no 0.566 0.771 0.408 3e-47
Q75DK1308 SEC14 cytosolic factor OS yes no 0.620 0.827 0.397 1e-46
P45816 492 SEC14 cytosolic factor OS yes no 0.622 0.520 0.386 2e-46
P33324310 CRAL-TRIO domain-containi no no 0.620 0.822 0.375 9e-42
Q03606 719 CRAL-TRIO domain-containi yes no 0.545 0.311 0.324 3e-30
Q16KN5 646 Protein real-time OS=Aede N/A no 0.603 0.383 0.324 3e-30
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function desciption
 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 144/233 (61%), Gaps = 3/233 (1%)

Query: 119 DYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHG 178
           D  TLLRFLR R F++ +S EMF+   KW  ++GVD ++K F ++E   V K+YP  YH 
Sbjct: 49  DDATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHK 108

Query: 179 VDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIAST 238
            D  GRPVY+E++G +DL  L Q+TT ER +++ V E E     R+P+CS  A   I ++
Sbjct: 109 TDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIETS 168

Query: 239 TSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFL 298
            +I+D+ GVG+++      Y+  +   I  +YYPE + + ++INA   F   + ++K FL
Sbjct: 169 CTIMDLKGVGITSIHSVYSYI-RQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFL 227

Query: 299 DARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWN 351
           D  T+ KI +LGSNY S L E I   NLP+ LGGNC C   GGC  SD GPW+
Sbjct: 228 DEATVKKIHILGSNYKSALLEQIPADNLPAKLGGNCQCP--GGCELSDAGPWH 278
Has a direct role in controlling cell septation and in forespore membrane formation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q03606|YN02_CAEEL CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=4 SV=3 Back     alignment and function description
>sp|Q16KN5|RETM_AEDAE Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
356540508460 PREDICTED: sec14 cytosolic factor-like [ 0.861 0.769 0.679 1e-141
357482025448 Sec14 cytosolic factor [Medicago truncat 0.849 0.779 0.681 1e-140
224138576308 predicted protein [Populus trichocarpa] 0.734 0.980 0.754 1e-139
356495609463 PREDICTED: SEC14 cytosolic factor-like [ 0.863 0.766 0.654 1e-139
255576066324 Sec14 cytosolic factor, putative [Ricinu 0.776 0.984 0.746 1e-135
224074145300 predicted protein [Populus trichocarpa] 0.725 0.993 0.755 1e-133
225426995389 PREDICTED: sec14 cytosolic factor-like [ 0.727 0.768 0.735 1e-130
9758779403 unnamed protein product [Arabidopsis tha 0.673 0.687 0.678 1e-117
30695223376 Sec14p-like phosphatidylinositol transfe 0.673 0.736 0.678 1e-117
89257485421 CRAL/TRIO domain containing protein [Bra 0.693 0.676 0.656 1e-116
>gi|356540508|ref|XP_003538730.1| PREDICTED: sec14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/371 (67%), Positives = 287/371 (77%), Gaps = 17/371 (4%)

Query: 9   RDIVISRGSEEGEESTA---------KRSGEWTKVKHPPIETYWLFPPEKEDKAPSSSKG 59
           RD++I RG  E E  +            S   TK  HPPIET+W         A   +  
Sbjct: 7   RDVIIGRGDGEEESCSGFLGLRFDIGGSSKSRTKSFHPPIETHWDLNSAAAAAAGKKASS 66

Query: 60  GIKSLLNYPI-KIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHN 118
            IKSLL+YP+ K R       + KS+ ++L+GA DPKD+Q+V SFREMLL EG LPPKHN
Sbjct: 67  PIKSLLSYPLMKFR-------KTKSLIMILEGAHDPKDKQIVDSFREMLLREGLLPPKHN 119

Query: 119 DYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHG 178
           DYHTLLRFLRMRDFD+SKSKEMF NYLKW  D+ VD + KEF F E+ EVKK YPHGYHG
Sbjct: 120 DYHTLLRFLRMRDFDMSKSKEMFQNYLKWRKDFRVDVLPKEFNFTEYDEVKKCYPHGYHG 179

Query: 179 VDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIAST 238
           VD++GRPVYIERIGMVDLN L QVTT ERFI+HHVSEQEKTL  R+P+CS+AAKRHIAST
Sbjct: 180 VDRYGRPVYIERIGMVDLNNLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIAST 239

Query: 239 TSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFL 298
           TSILDV GVGMSNFSKPARYLFMEI KIDS YYPETL++LFIINAGS FRMLWK VKAFL
Sbjct: 240 TSILDVNGVGMSNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKAFL 299

Query: 299 DARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDYGGCLFSDKGPWNNPEIKEV 358
           D RT+AKI VLGSNYLS L E IDPSNLP+FLGGNCTCSDYGGCL SD+GPW NPE+ E+
Sbjct: 300 DVRTMAKIHVLGSNYLSVLLEAIDPSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEM 359

Query: 359 LQAVSATEEVD 369
           +Q V+  EE++
Sbjct: 360 IQVVNLREEIN 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357482025|ref|XP_003611298.1| Sec14 cytosolic factor [Medicago truncatula] gi|355512633|gb|AES94256.1| Sec14 cytosolic factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|224138576|ref|XP_002326637.1| predicted protein [Populus trichocarpa] gi|222833959|gb|EEE72436.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495609|ref|XP_003516667.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|255576066|ref|XP_002528928.1| Sec14 cytosolic factor, putative [Ricinus communis] gi|223531630|gb|EEF33457.1| Sec14 cytosolic factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224074145|ref|XP_002304272.1| predicted protein [Populus trichocarpa] gi|222841704|gb|EEE79251.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426995|ref|XP_002266497.1| PREDICTED: sec14 cytosolic factor-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|9758779|dbj|BAB09077.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30695223|ref|NP_199562.2| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] gi|332008144|gb|AED95527.1| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|89257485|gb|ABD64976.1| CRAL/TRIO domain containing protein [Brassica oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
TAIR|locus:2169038376 AT5G47510 "AT5G47510" [Arabido 0.671 0.734 0.648 1.7e-103
TAIR|locus:2018416 668 AT1G75370 [Arabidopsis thalian 0.727 0.447 0.528 1.7e-84
TAIR|locus:2136288 614 AT4G39170 [Arabidopsis thalian 0.763 0.511 0.506 1e-82
TAIR|locus:2050019 637 AT2G21520 [Arabidopsis thalian 0.763 0.492 0.503 2.8e-82
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.727 0.545 0.521 5.8e-82
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.722 0.536 0.516 5.8e-82
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.727 0.539 0.511 1.2e-81
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.744 0.563 0.496 4.1e-81
TAIR|locus:2053114 558 AT2G18180 "AT2G18180" [Arabido 0.712 0.525 0.506 1.8e-80
TAIR|locus:2013134 608 AT1G19650 [Arabidopsis thalian 0.722 0.488 0.51 2.2e-80
TAIR|locus:2169038 AT5G47510 "AT5G47510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1003 (358.1 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
 Identities = 179/276 (64%), Positives = 220/276 (79%)

Query:    92 RDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADY 151
             + P +E++V++FR +LLL G LP KH D++TL RFL+MRDFD+ KSKE FLNY+KW  DY
Sbjct:    20 QSPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDY 79

Query:   152 GVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRH 211
              VD I               YPHG+H VDK GRP+YIER+GM DLNA L+ TT+ER++ +
Sbjct:    80 KVDLISQKFKFEEYGEVKKHYPHGFHKVDKTGRPIYIERLGMTDLNAFLKATTIERYVNY 139

Query:   212 HVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYY 271
             H+ EQEKT+S RYP+CSIA+ +H++STT+ILDV+GVGMSNFSKPAR LFMEI KIDSNYY
Sbjct:   140 HIKEQEKTMSLRYPACSIASDKHVSSTTTILDVSGVGMSNFSKPARSLFMEIQKIDSNYY 199

Query:   272 PETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLG 331
             PETLHRLF++NA S FRMLW  +K FLDARTLAK+QVLG NYL  L E I+PSNLP+FLG
Sbjct:   200 PETLHRLFVVNASSGFRMLWLALKTFLDARTLAKVQVLGPNYLGELLEAIEPSNLPTFLG 259

Query:   332 GNCTCSDYGGCLFSDKGPWNNPEIKEVLQAVSATEE 367
             GNCTCSD+GGCLFSD+GPWN+P IKE ++  S  E+
Sbjct:   260 GNCTCSDHGGCLFSDEGPWNDPGIKEKIEEPSTIED 295
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=ISS
TAIR|locus:2018416 AT1G75370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136288 AT4G39170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050019 AT2G21520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013134 AT1G19650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009605001
SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (369 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-40
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 5e-39
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 4e-35
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 4e-12
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 2e-08
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 1e-06
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  140 bits (356), Expect = 2e-40
 Identities = 66/173 (38%), Positives = 87/173 (50%), Gaps = 16/173 (9%)

Query: 164 EFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFR 223
           E   +K + P G  G DK GRPV IER G  DL       T+E  +R+ V   EK L   
Sbjct: 1   ELELLKAYIPGGR-GYDKDGRPVLIERAGRFDLK----SVTLEELLRYLVYVLEKILQEE 55

Query: 224 YPSCSIAAKRHIASTTSILDVTGVGMSNF-SKPARYLFMEILKIDSNYYPETLHRLFIIN 282
                      I   T I D+ G+ MSN      R    +ILKI  ++YPE L +++IIN
Sbjct: 56  ------KKTGGIEGFTVIFDLKGLSMSNPDLSVLR----KILKILQDHYPERLGKVYIIN 105

Query: 283 AGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCT 335
               FR+LWK++K FLD +T  KI+ +G++    L E ID   LP  LGG   
Sbjct: 106 PPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDKEQLPEELGGTLD 158

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.94
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.51
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.91
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.4
PF13897136 GOLD_2: Golgi-dynamics membrane-trafficking 97.08
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 80.46
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-46  Score=365.66  Aligned_cols=280  Identities=42%  Similarity=0.696  Sum_probs=254.1

Q ss_pred             hhhhhcccCcccccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcC
Q 015210           73 DSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYG  152 (411)
Q Consensus        73 ~~~~~~~~~e~~~~~~l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~~~l~wR~~~~  152 (411)
                      +...+.+..+      +.+.++.+++.++++| |+.++|+++..+.||.+|+||||||+||+++|.++|.+++.||++++
T Consensus         5 ~~~~~~~~~~------~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~   77 (317)
T KOG1471|consen    5 PMLAKVAKEE------LNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNK   77 (317)
T ss_pred             cccccccccc------cCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence            3445556667      8899999999999999 99999999887889999999999999999999999999999999999


Q ss_pred             CCchhcccChhhHHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhc
Q 015210          153 VDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAK  232 (411)
Q Consensus       153 ~d~i~~~~~~~~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~  232 (411)
                      +|+++.+.  .....+.++++.+.+|.|++|+||++.+.|..|...++..+...++.++++..+|..+..+++.+....+
T Consensus        78 ~d~i~~~~--~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~  155 (317)
T KOG1471|consen   78 LDEIFEDF--EEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGE  155 (317)
T ss_pred             CccHhhcc--ccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999872  2334555577889999999999999999999999999999999999999999999999988888887777


Q ss_pred             CccccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCC
Q 015210          233 RHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSN  312 (411)
Q Consensus       233 ~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~  312 (411)
                      .+++|+++|+||+|++++|+....+..++.++.+++++||++++++||||+|++|+++|+++||||+++|++||++++++
T Consensus       156 ~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~  235 (317)
T KOG1471|consen  156 RQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSK  235 (317)
T ss_pred             CCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999966667


Q ss_pred             chhHHHccCCCCCCCccCCCCccCC---CCCCccccCCCCCCChhhHHHhhh
Q 015210          313 YLSNLHELIDPSNLPSFLGGNCTCS---DYGGCLFSDKGPWNNPEIKEVLQA  361 (411)
Q Consensus       313 ~~~~L~e~Id~~~LP~eyGGt~~~~---~~~g~~~~~~~~w~~~~~~~~~~~  361 (411)
                      +.++|.++|+++.||.+|||++++.   ..++|..++.++|...........
T Consensus       236 ~~~~L~k~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T KOG1471|consen  236 DKESLLKYIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE  287 (317)
T ss_pred             chhhhhhhCCHhhCccccCCCccccccccCCcCccccccccccccccccccc
Confidence            7899999999999999999999997   366799999999999776654433

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 9e-46
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 4e-40
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 2e-39
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 6e-23
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 6e-23
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 8e-22
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 6e-07
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 2e-06
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (458), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 146/266 (54%), Gaps = 4/266 (1%)
Query: 90  GARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCA 149
           G  D   E+ +   R++L   G +  +  D  TLLRFLR R FD+  +KEMF N  KW  
Sbjct: 24  GNLDSAQEKALAELRKLLEDAGFI--ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRK 81
Query: 150 DYGVDTILXXXXXXXXXXXXXXYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFI 209
           DYG DTIL              YP  YH  DK GRPVY E +G V+L+ + +VT+ ER +
Sbjct: 82  DYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERML 141
Query: 210 RHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSN 269
           ++ V E E  + +R P+CS AA   + ++ +I+D+ G+ +S+      Y+  E   I  N
Sbjct: 142 KNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYV-REASYISQN 200
Query: 270 YYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSF 329
           YYPE + + +IINA   F   +++ K FLD  T++KI +LGS+Y   L + I   NLP  
Sbjct: 201 YYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 260
Query: 330 LGGNCTCSD-YGGCLFSDKGPWNNPE 354
            GG     +  GG   SD GPW +P+
Sbjct: 261 FGGKSEVDESKGGLYLSDIGPWRDPK 286
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-115
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-108
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 8e-93
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 1e-74
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 1e-66
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 3e-05
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  336 bits (863), Expect = e-115
 Identities = 104/264 (39%), Positives = 152/264 (57%), Gaps = 4/264 (1%)

Query: 93  DPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFLNYLKWCADYG 152
           D   E+ +   R+ LL +     + +D  TLLRFLR R FD+  +KEMF N  KW  DYG
Sbjct: 27  DSAQEKALAELRK-LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 153 VDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHH 212
            DTIL++F ++E   + KFYP  YH  DK GRPVY E +G V+L+ + +VT+ ER +++ 
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144

Query: 213 VSEQEKTLSFRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYP 272
           V E E  + +R P+CS AA   + ++ +I+D+ G+ +S+          E   I  NYYP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYP 203

Query: 273 ETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGG 332
           E + + +IINA   F   +++ K FLD  T++KI +LGS+Y   L + I   NLP   GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263

Query: 333 NCTCSD-YGGCLFSDKGPWNNPEI 355
                +  GG   SD GPW +P+ 
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDPKY 287
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.28
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.02
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 80.03
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
Probab=100.00  E-value=1.7e-56  Score=433.86  Aligned_cols=282  Identities=39%  Similarity=0.665  Sum_probs=253.9

Q ss_pred             ccccCCCCCChhhhhcccCcccccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhccCCCHHHHHHHHH
Q 015210           63 SLLNYPIKIRDSLKGIGRGKSMQVVLQGARDPKDEQLVQSFREMLLLEGQLPPKHNDYHTLLRFLRMRDFDISKSKEMFL  142 (411)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~~e~~~~~~l~e~~~~~~~~l~elRe~l~~~~~l~~~~~dd~~LlRFLra~kfdv~kA~~~L~  142 (411)
                      +++.|.....+...   ...      +++++++++++|++||+||+++++  +++.||.+|+|||||||||+++|.++|+
T Consensus         6 ~~~~~~~~~~~~~~---~~~------~~~l~~~q~~~l~~lr~~l~~~~~--~~~~dd~~LlRFLrarkfdv~~A~~~l~   74 (296)
T 1aua_A            6 FLESYPQNCPPDAL---PGT------PGNLDSAQEKALAELRKLLEDAGF--IERLDDSTLLRFLRARKFDVQLAKEMFE   74 (296)
T ss_dssp             HHTTSCCCCCTTSC---TTS------TTTCCTTHHHHHHHHHHHHHHTTC--CSSCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             ccccCCCCCCcccC---CCC------CCCCCHHHHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence            46667766665422   222      678899999999999999999884  4678999999999999999999999999


Q ss_pred             HHHHHHHHcCCCchhcccChhhHHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhh
Q 015210          143 NYLKWCADYGVDTILKEFKFEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSF  222 (411)
Q Consensus       143 ~~l~wR~~~~~d~i~~~~~~~~~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~  222 (411)
                      +|++||+.+++++++.+.++++.+.+.++++.+++|+|++||||+++++|.+|++++.+..+.+++++++++.+|.+++.
T Consensus        75 ~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~  154 (296)
T 1aua_A           75 NCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQY  154 (296)
T ss_dssp             HHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887665555677888888999999999999999999999999888889999999999999999987


Q ss_pred             hcccchhhhcCccccEEEEEecCCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhh
Q 015210          223 RYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDART  302 (411)
Q Consensus       223 ~~~~~s~~~~~~i~g~vvIiD~~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt  302 (411)
                      ++++|+...+.+++++++|+|++|++++|++.. +.+++.++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus       155 ~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t  233 (296)
T 1aua_A          155 RLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT  233 (296)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhh
Confidence            777777777788999999999999999988753 7899999999999999999999999999999999999999999999


Q ss_pred             hcceEEcCCCchhHHHccCCCCCCCccCCCCccCCC-CCCccccCCCCCCChhhH
Q 015210          303 LAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSD-YGGCLFSDKGPWNNPEIK  356 (411)
Q Consensus       303 ~~KI~~~~~~~~~~L~e~Id~~~LP~eyGGt~~~~~-~~g~~~~~~~~w~~~~~~  356 (411)
                      ++||+|+++++.++|.++||+++||++|||+++|.+ .+||+.++.|||+++++.
T Consensus       234 ~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~  288 (296)
T 1aua_A          234 VSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI  288 (296)
T ss_dssp             HTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGC
T ss_pred             cceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhc
Confidence            999999998888899999999999999999999985 579999999999998765
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 411
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 4e-62
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 5e-52
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 1e-28
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-19
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 5e-18
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 1e-10
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  197 bits (501), Expect = 4e-62
 Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 2/195 (1%)

Query: 162 FEEFAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLS 221
           ++E   + KFYP  YH  DK GRPVY E +G V+L+ + +VT+ ER +++ V E E  + 
Sbjct: 1   YDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQ 60

Query: 222 FRYPSCSIAAKRHIASTTSILDVTGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFII 281
           +R P+CS AA   + ++ +I+D+ G+ +S+      Y+  E   I  NYYPE + + +II
Sbjct: 61  YRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYV-REASYISQNYYPERMGKFYII 119

Query: 282 NAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPSNLPSFLGGNCTCSDY-G 340
           NA   F   +++ K FLD  T++KI +LGS+Y   L + I   NLP   GG     +  G
Sbjct: 120 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKG 179

Query: 341 GCLFSDKGPWNNPEI 355
           G   SD GPW +P+ 
Sbjct: 180 GLYLSDIGPWRDPKY 194
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.62
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.56
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.49
d1olma2119 Supernatant protein factor (SPF), C-terminal domai 96.47
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 86.21
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 82.13
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 81.73
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 81.64
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 80.49
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-39  Score=290.51  Aligned_cols=191  Identities=38%  Similarity=0.673  Sum_probs=176.2

Q ss_pred             HHHHhhcccceeeccCCCCCcEEEEeccccCcccccccCCHHHHHHHHHHHHHHHhhhhcccchhhhcCccccEEEEEec
Q 015210          165 FAEVKKFYPHGYHGVDKFGRPVYIERIGMVDLNALLQVTTVERFIRHHVSEQEKTLSFRYPSCSIAAKRHIASTTSILDV  244 (411)
Q Consensus       165 ~~~l~~~~~~~~~G~Dk~GrpV~i~r~g~~d~~~~~~~~~~~~~ir~~v~~lE~~l~~~~~~~s~~~~~~i~g~vvIiD~  244 (411)
                      .+.+.+++|.++||+|++||||+++++|++|+.++.+..+.+++++++++.+|.+++..+.+++...+.+++++++|+|+
T Consensus         4 ~~~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~   83 (203)
T d1auaa2           4 KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDL   83 (203)
T ss_dssp             HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred             cHHHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEEC
Confidence            45778999999999999999999999999999999888999999999999999999876666666677889999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHhhccCccccceEEEEecChhHHHHHHHHHHhcCHhhhcceEEcCCCchhHHHccCCCC
Q 015210          245 TGVGMSNFSKPARYLFMEILKIDSNYYPETLHRLFIINAGSAFRMLWKVVKAFLDARTLAKIQVLGSNYLSNLHELIDPS  324 (411)
Q Consensus       245 ~G~sl~~~~~~~~~~ik~~~~ilq~~YPerl~~i~IVNaP~~f~~~w~likpfL~~kt~~KI~~~~~~~~~~L~e~Id~~  324 (411)
                      +|+++++++. ...+++.++++++++||++++++||||+|++|+++|+++|+||+++|++||+++++++.+.|.++||++
T Consensus        84 ~g~s~~~~~~-~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~  162 (203)
T d1auaa2          84 KGISISSAYS-VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE  162 (203)
T ss_dssp             TTCCHHHHHH-HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS
T ss_pred             CCCChHHhhh-HHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHh
Confidence            9999998863 467899999999999999999999999999999999999999999999999999988889999999999


Q ss_pred             CCCccCCCCccCC-CCCCccccCCCCCCChhhH
Q 015210          325 NLPSFLGGNCTCS-DYGGCLFSDKGPWNNPEIK  356 (411)
Q Consensus       325 ~LP~eyGGt~~~~-~~~g~~~~~~~~w~~~~~~  356 (411)
                      +||++|||+|+|. ..|+|..++.+||++|+..
T Consensus       163 ~LP~~~GG~~~~~~~~g~~~~~~~~~~~~p~~~  195 (203)
T d1auaa2         163 NLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI  195 (203)
T ss_dssp             SSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGC
T ss_pred             hChHHhCCCCcCCCCCCCccccCCCCCCChhhc
Confidence            9999999999986 4689999999999998654
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure