Citrus Sinensis ID: 015211

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MNRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVGVS
cccHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEEEccccccccccccccEEEEccccccccccccccccEEEEcccccccHHHHHHHcccccccEEEEccccccccEEEccccccccEEEEccccccccccEEEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccEEEEEcccEEEEEcccccc
ccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHcccccccccccccccccccHcccccEEEEEEEEccccEEEEEEEEcccccEEEEccccccccccHHHHccccccccccccccccccEEcccccHHcccccccccccccccEEEEEEcccccccEEEEEEEEEEccccccccccccEcEEEEEEEEccccHEEEccccccccccccccccHHHHHHHccccccEEEEEEccccccEEEEcccccccccccccccccccccEEEEEEEEEEEccEEEcccccEEEEEcccEEEEcccHHHHHHHHHHccHccccccccccccccEEEEEccccccccccEEEEEEcccEEEcccccEEEEEcccccc
MNRISLTIYLAVFWLLtessgaetvMFSTKLIHRFSEEVKALgvsknrnatswpakkSFEYYQVLLSSDvqkqkmktgpqfqmlfpsqgsktmslgndfgwlhytwidigtpnVSFLVALdagsdllwipcdcvrcaplsasyYNSLdrdlneyspsasstskhlscshrlcdlgtscqnpkqpcpytmdyytentsssgllVEDILHLISGGDNALKNSVQASVIIGCgmkqsggyldgvapdgliglglgeisvPSLLAKAGlirnsfsmcfdkddsgriffgdqgpatqqSTSFLASNGKYITYIIGVETccigssclkqtSFKAIvdsgssftflpkEVYETIAAEFDRQvndtitsfegypwkccyksssqrlpklpsvklmfpqnnsfvvnnpVFVIYGTQVGVS
MNRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVkalgvsknrnatswpakKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLmfpqnnsfvvnnpVFVIYGTQVGVS
MNRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMfpqnnsfvvnnpvfvIYGTQVGVS
***ISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLS**************************SLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLD******************CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQG*****STSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQV***
**RISLTIYLAVFWLLTESSG****MFSTKLIHRFSE***********************************************************NDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYY*SLDRDLNEYSPSASSTSKHLSCSH***************CPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVND*****EGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVG**
MNRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLN**************CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVGVS
*NRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ****
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SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNRISLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVGVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q9LX20 528 Aspartic proteinase-like yes no 0.961 0.748 0.597 1e-141
Q9S9K4475 Aspartic proteinase-like no no 0.710 0.614 0.296 3e-20
Q766C2438 Aspartic proteinase nepen N/A no 0.669 0.627 0.262 1e-13
Q0IU52410 Aspartic proteinase Asp1 no no 0.583 0.585 0.259 1e-11
Q766C3437 Aspartic proteinase nepen N/A no 0.761 0.716 0.240 2e-11
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.569 0.570 0.259 7e-11
Q6XBF8437 Aspartic proteinase CDR1 no no 0.557 0.524 0.268 2e-10
Q9LZL3453 Aspartic proteinase PCS1 no no 0.610 0.554 0.252 2e-07
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.632 0.52 0.258 8e-07
P0DJ06398 Candidapepsin-2 OS=Candid N/A no 0.508 0.525 0.241 2e-06
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function desciption
 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/405 (59%), Positives = 313/405 (77%), Gaps = 10/405 (2%)

Query: 8   IYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLS 67
           +   V +L TE + A   +FS++LIHRFS+E +A  +    ++ S P K+S EYY++L  
Sbjct: 8   LLFCVLFLATEETLAS--LFSSRLIHRFSDEGRA-SIKTPSSSDSLPNKQSLEYYRLLAE 64

Query: 68  SDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLL 127
           SD ++Q+M  G + Q L PS+GSKT+S GNDFGWLHYTWIDIGTP+VSFLVALD GS+LL
Sbjct: 65  SDFRRQRMNLGAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSFLVALDTGSNLL 124

Query: 128 WIPCDCVRCAPLSASYYNSL-DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCP 186
           WIPC+CV+CAPL+++YY+SL  +DLNEY+PS+SSTSK   CSH+LCD  + C++PK+ CP
Sbjct: 125 WIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCESPKEQCP 184

Query: 187 YTMDYYTENTSSSGLLVEDILHLISGGDNALKN---SVQASVIIGCGMKQSGGYLDGVAP 243
           YT++Y + NTSSSGLLVEDILHL    +N L N   SV+A V+IGCG KQSG YLDGVAP
Sbjct: 185 YTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLDGVAP 244

Query: 244 DGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLA-SNG 302
           DGL+GLG  EISVPS L+KAGL+RNSFS+CFD++DSGRI+FGD GP+ QQST FL   N 
Sbjct: 245 DGLMGLGPAEISVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQQSTPFLQLDNN 304

Query: 303 KYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSF 362
           KY  YI+GVE CCIG+SCLKQTSF   +DSG SFT+LP+E+Y  +A E DR +N T  +F
Sbjct: 305 KYSGYIVGVEACCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKVALEIDRHINATSKNF 364

Query: 363 EGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 407
           EG  W+ CY+SS++  PK+P++KL F  NN+FV++ P+FV   +Q
Sbjct: 365 EGVSWEYCYESSAE--PKVPAIKLKFSHNNTFVIHKPLFVFQQSQ 407

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|P0DJ06|CARP2_CANAL Candidapepsin-2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SAP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
255576176 542 Aspartic proteinase nepenthesin-1 precur 0.970 0.736 0.760 0.0
224083757492 predicted protein [Populus trichocarpa] 0.939 0.784 0.742 1e-175
296082464 530 unnamed protein product [Vitis vinifera] 0.968 0.750 0.697 1e-166
225438629511 PREDICTED: aspartic proteinase-like prot 0.934 0.751 0.710 1e-164
449451627 532 PREDICTED: aspartic proteinase-like prot 0.934 0.721 0.685 1e-158
449533544408 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.934 0.941 0.682 1e-157
356538031 521 PREDICTED: aspartic proteinase-like prot 0.914 0.721 0.689 1e-152
356567798 520 PREDICTED: aspartic proteinase-like prot 0.914 0.723 0.683 1e-151
357463449 529 Aspartic proteinase-like protein [Medica 0.917 0.712 0.660 1e-147
359492825 531 PREDICTED: aspartic proteinase-like prot 0.958 0.741 0.638 1e-147
>gi|255576176|ref|XP_002528982.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223531572|gb|EEF33401.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/401 (76%), Positives = 349/401 (87%), Gaps = 2/401 (0%)

Query: 8   IYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNAT-SWPAKKSFEYYQVLL 66
           +++ V   L     AE V FS++LIHRFS+EVKAL VS+  + + SWP KKS +YYQ+L+
Sbjct: 18  LFILVMASLLIDKSAE-VTFSSRLIHRFSDEVKALRVSRKDSLSYSWPEKKSMDYYQILV 76

Query: 67  SSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDL 126
           +SD Q+QKMK GPQ+Q LFPSQGSKTMSLG+DFGWLHYTWIDIGTP+VSFLVALDAGSDL
Sbjct: 77  NSDFQRQKMKLGPQYQFLFPSQGSKTMSLGDDFGWLHYTWIDIGTPHVSFLVALDAGSDL 136

Query: 127 LWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCP 186
           LW+PCDC++CAPLSASYY+SLDRDLNEYSPS SSTSKHLSCSH+LC+LG +C +PKQPCP
Sbjct: 137 LWVPCDCLQCAPLSASYYSSLDRDLNEYSPSHSSTSKHLSCSHQLCELGPNCNSPKQPCP 196

Query: 187 YTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGL 246
           Y+MDYYTENTSSSGLLVEDILHL S GDNAL  SV+A V+IGCGMKQSGGYLDGVAPDGL
Sbjct: 197 YSMDYYTENTSSSGLLVEDILHLASNGDNALSYSVRAPVVIGCGMKQSGGYLDGVAPDGL 256

Query: 247 IGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLASNGKYIT 306
           +GLGL EISVPS LAKAGLIRNSFSMCFD+DDSGRIFFGDQGP TQQST FL  +G Y T
Sbjct: 257 MGLGLAEISVPSFLAKAGLIRNSFSMCFDEDDSGRIFFGDQGPTTQQSTPFLTLDGNYTT 316

Query: 307 YIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYP 366
           Y++GVE  C+GSSCLKQTSF+A+VD+G+SFTFLP  VYE I  EFDRQVN TI+SF GYP
Sbjct: 317 YVVGVEGFCVGSSCLKQTSFRALVDTGTSFTFLPNGVYERITEEFDRQVNATISSFNGYP 376

Query: 367 WKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 407
           WK CYKSSS  L K+PSVKL+FP NNSFV++NPVF+IYG Q
Sbjct: 377 WKYCYKSSSNHLTKVPSVKLIFPLNNSFVIHNPVFMIYGIQ 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224083757|ref|XP_002307112.1| predicted protein [Populus trichocarpa] gi|222856561|gb|EEE94108.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296082464|emb|CBI21469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438629|ref|XP_002281243.1| PREDICTED: aspartic proteinase-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451627|ref|XP_004143563.1| PREDICTED: aspartic proteinase-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449533544|ref|XP_004173734.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase-like protein 1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538031|ref|XP_003537508.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356567798|ref|XP_003552102.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357463449|ref|XP_003602006.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355491054|gb|AES72257.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|359492825|ref|XP_002284255.2| PREDICTED: aspartic proteinase-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
TAIR|locus:2184138 528 AT5G10080 [Arabidopsis thalian 0.917 0.714 0.604 1.4e-126
TAIR|locus:2125324 524 AT4G35880 [Arabidopsis thalian 0.905 0.709 0.382 1.3e-66
TAIR|locus:2827921 513 AT2G17760 [Arabidopsis thalian 0.895 0.717 0.403 1.4e-64
TAIR|locus:2080903 529 AT3G51330 [Arabidopsis thalian 0.883 0.686 0.369 1.5e-53
TAIR|locus:2080908 530 AT3G51340 [Arabidopsis thalian 0.871 0.675 0.360 1.1e-50
TAIR|locus:2080913 528 AT3G51350 [Arabidopsis thalian 0.827 0.643 0.349 1.1e-46
TAIR|locus:2080973488 AT3G51360 [Arabidopsis thalian 0.829 0.698 0.334 3e-46
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.579 0.487 0.326 7.3e-30
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.605 0.513 0.305 4.9e-24
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.712 0.572 0.286 3.6e-22
TAIR|locus:2184138 AT5G10080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 234/387 (60%), Positives = 300/387 (77%)

Query:     5 SLTIYLAVFWLLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQV 64
             S  +   V +L TE + A   +FS++LIHRFS+E +A  +    ++ S P K+S EYY++
Sbjct:     5 SAFLLFCVLFLATEETLAS--LFSSRLIHRFSDEGRA-SIKTPSSSDSLPNKQSLEYYRL 61

Query:    65 LLSSDVQKQKMKTGPQFQMLFPSQGSKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGS 124
             L  SD ++Q+M  G + Q L PS+GSKT+S GNDFGWLHYTWIDIGTP+VSFLVALD GS
Sbjct:    62 LAESDFRRQRMNLGAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSFLVALDTGS 121

Query:   125 DLLWIPCDCVRCAPLSASYYNSL-DRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQ 183
             +LLWIPC+CV+CAPL+++YY+SL  +DLNEY+PS+SSTSK   CSH+LCD  + C++PK+
Sbjct:   122 NLLWIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCESPKE 181

Query:   184 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKN---SVQASVIIGCGMKQSGGYLDG 240
              CPYT++Y + NTSSSGLLVEDILHL    +N L N   SV+A V+IGCG KQSG YLDG
Sbjct:   182 QCPYTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGDYLDG 241

Query:   241 VAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPATQQSTSFLA- 299
             VAPDGL+GLG  EISVPS L+KAGL+RNSFS+CFD++DSGRI+FGD GP+ QQST FL  
Sbjct:   242 VAPDGLMGLGPAEISVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQQSTPFLQL 301

Query:   300 SNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTI 359
              N KY  YI+GVE CCIG+SCLKQTSF   +DSG SFT+LP+E+Y  +A E DR +N T 
Sbjct:   302 DNNKYSGYIVGVEACCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKVALEIDRHINATS 361

Query:   360 TSFEGYPWKCCYKSSSQRLPKLPSVKL 386
              +FEG  W+ CY+SS++  PK+P++KL
Sbjct:   362 KNFEGVSWEYCYESSAE--PKVPAIKL 386
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
TAIR|locus:2125324 AT4G35880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827921 AT2G17760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080903 AT3G51330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080908 AT3G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080913 AT3G51350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080973 AT3G51360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LX20ASPL1_ARATH3, ., 4, ., 2, 3, ., -0.59750.96100.7481yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.2960.1
hypothetical protein (492 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-27
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-25
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 5e-24
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 2e-18
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-18
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-13
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 9e-11
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-07
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 7e-06
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-05
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 6e-05
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.001
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 0.002
cd05487326 cd05487, renin_like, Renin stimulates production o 0.003
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 0.003
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information 
 Score =  109 bits (275), Expect = 2e-27
 Identities = 73/300 (24%), Positives = 109/300 (36%), Gaps = 66/300 (22%)

Query: 107 IDIGTPNVSFLVALDAGSDLLWIPC-DCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHL 165
           I IGTP   F V  D GS LLW+P  +C  C+      +         Y  S SST K  
Sbjct: 5   ITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFK--------YDSSKSSTYK-- 54

Query: 166 SCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV 225
                              C +++ Y     S +G L  D + +   G   + N      
Sbjct: 55  ----------------DTGCTFSITYGD--GSVTGGLGTDTVTI---GGLTIPN-----Q 88

Query: 226 IIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSL------LAKAGLI-RNSFSMCFDKD- 277
             GC   +SG +      DG++GLG   +SV  +      L   GLI    FS    +D 
Sbjct: 89  TFGCATSESGDFSSSGF-DGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDG 147

Query: 278 ---DSGRIFFGDQGPATQQS----TSFLASNGKYITYIIGVETCCIGSSCLKQTSFK--A 328
              + G + FG   P+        T  +++   Y  + + ++   +G   +  +S    A
Sbjct: 148 DGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGY--WQVPLDGISVGGKSVISSSGGGGA 205

Query: 329 IVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMF 388
           IVDSG+S  +LP  VY+ I       V+              Y         LP +   F
Sbjct: 206 IVDSGTSLIYLPSSVYDAILKALGAAVS---------SSDGGYGVDCSPCDTLPDITFTF 256

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.98
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.64
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.76
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.48
PF1365090 Asp_protease_2: Aspartyl protease 94.78
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.73
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.91
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 89.82
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.68
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 85.24
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 85.03
PF1365090 Asp_protease_2: Aspartyl protease 83.3
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 83.13
COG3577215 Predicted aspartyl protease [General function pred 82.35
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 80.78
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 80.73
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7e-58  Score=461.12  Aligned_cols=354  Identities=25%  Similarity=0.414  Sum_probs=267.4

Q ss_pred             HhhhhccccccccEEEEEEecChHHHhhcccCCCCCCCCCCCCcHHHHHHHhhchhhhhhhhcCCCccccccCCCCceee
Q 015211           15 LLTESSGAETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQKQKMKTGPQFQMLFPSQGSKTMS   94 (411)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (411)
                      +.+....+...+++++|+||+++++|.+.          +.....+..+++++++++|++........   ...  ...+
T Consensus        13 ~~~~~~~~~~~~~~~~l~h~~~~~sp~~~----------~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~--~~~~   77 (431)
T PLN03146         13 SELSAAEAPKGGFTVDLIHRDSPKSPFYN----------PSETPSQRLRNAFRRSISRVNHFRPTDAS---PND--PQSD   77 (431)
T ss_pred             hhhhhccccCCceEEEEEeCCCCCCCCCC----------CCCChhHHHHHHHHHHHHHHHHHhhcccc---CCc--cccC
Confidence            33444455677899999999999998754          12223455666666666655443221110   000  0111


Q ss_pred             ecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 015211           95 LGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCD  173 (411)
Q Consensus        95 l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~~C~  173 (411)
                      + ...+..|+++|.||||||++.|++||||+++||+|. |..|..+.          ++.|||++|+||+.++|+++.|.
T Consensus        78 ~-~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~fdps~SST~~~~~C~s~~C~  146 (431)
T PLN03146         78 L-ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLFDPKKSSTYKDVSCDSSQCQ  146 (431)
T ss_pred             c-ccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcccCCCCCCCcccCCCCcccc
Confidence            1 123568999999999999999999999999999998 98887543          58899999999999999999998


Q ss_pred             CCC---CCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecC
Q 015211          174 LGT---SCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLG  250 (411)
Q Consensus       174 ~~~---~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg  250 (411)
                      ...   .|..+ +.|.|.+.|+|| +.+.|.+++|+|+|++..+..   ..++++.|||++.+.|.+..  ..+||||||
T Consensus       147 ~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~--~~~GilGLG  219 (431)
T PLN03146        147 ALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE--KGSGIVGLG  219 (431)
T ss_pred             cCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--CCceeEecC
Confidence            642   37554 469999999997 677899999999998753221   24679999999988876532  469999999


Q ss_pred             CCCCChHHHHHhcCCCcceeEEeecC-----CCCceEEEccCCCCC---ceEeeeeecCCCceeEEEeeeeeEeCCeeec
Q 015211          251 LGEISVPSLLAKAGLIRNSFSMCFDK-----DDSGRIFFGDQGPAT---QQSTSFLASNGKYITYIIGVETCCIGSSCLK  322 (411)
Q Consensus       251 ~~~~s~~~~l~~~~~i~~~FS~cL~~-----~~~G~l~fG~~d~~~---~~~~p~v~~~~~~~~y~v~l~~i~vgg~~~~  322 (411)
                      ++.+|+++||..+  +.++|||||.+     ...|.|+||+.....   ..++|+++... +.+|+|+|++|+||++.+.
T Consensus       220 ~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~  296 (431)
T PLN03146        220 GGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLP  296 (431)
T ss_pred             CCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECc
Confidence            9999999998753  56799999964     136899999853221   34677765433 3799999999999999875


Q ss_pred             cCc--------ccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEE
Q 015211          323 QTS--------FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSF  394 (411)
Q Consensus       323 ~~~--------~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~  394 (411)
                      ...        ..+||||||++|+||+++|++|+++|.++++..+.......++.||+....  ..+|+|+||| +|+++
T Consensus       297 ~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~  373 (431)
T PLN03146        297 YTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADV  373 (431)
T ss_pred             CCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCee
Confidence            321        369999999999999999999999999999755443333457889985432  4789999999 58999


Q ss_pred             EEeCCeEEEEecc
Q 015211          395 VVNNPVFVIYGTQ  407 (411)
Q Consensus       395 ~i~~~~yi~~~~~  407 (411)
                      .|++++|+++.++
T Consensus       374 ~l~~~~~~~~~~~  386 (431)
T PLN03146        374 KLQPLNTFVKVSE  386 (431)
T ss_pred             ecCcceeEEEcCC
Confidence            9999999987643

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 6e-07
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 6e-07
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 8e-06
3vla_A413 Crystal Structure Of Edgp Length = 413 9e-06
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 5e-04
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 5e-04
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 116/279 (41%), Gaps = 56/279 (20%)
Query: 107 IDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLS 166
           I +G+ N    V +D GS  LW+P   V C    +       +    Y PS SS S+ L+
Sbjct: 18  ITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN 77
Query: 167 CSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASV- 225
              ++                    Y + +SS G L +D +     G  ++KN V A V 
Sbjct: 78  TPFKIG-------------------YGDGSSSQGTLYKDTVGF---GGVSIKNQVLADVD 115
Query: 226 -------IIGCGMK--QSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLI-RNSFSMCFD 275
                  I+G G K  ++GG  D               +VP  L K G+I +N++S+  +
Sbjct: 116 STSIDQGILGVGYKTNEAGGSYD---------------NVPVTLKKQGVIAKNAYSLYLN 160
Query: 276 KDD--SGRIFFGDQGPATQQSTSFLA---SNGKYITYIIGVETCCIGSSCLKQTSFKAIV 330
             D  +G+I FG    A + S S +A   ++ + +   +G  +  +    +   +   ++
Sbjct: 161 SPDAATGQIIFGGVDNA-KYSGSLIALPVTSDRELRISLG--SVEVSGKTINTDNVDVLL 217
Query: 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKC 369
           DSG++ T+L +++ + I   F+ ++         Y   C
Sbjct: 218 DSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC 256
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-54
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-46
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 7e-46
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 9e-20
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-19
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-18
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-18
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-17
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-17
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 8e-17
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 7e-15
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-14
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-14
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-14
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 2e-14
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 3e-14
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 4e-14
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-14
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-13
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-13
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-13
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 4e-13
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 4e-13
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 6e-13
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 7e-13
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-12
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 2e-12
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-12
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 8e-12
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-11
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 8e-11
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 6e-09
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 8e-08
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 6e-06
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  184 bits (468), Expect = 2e-54
 Identities = 59/324 (18%), Positives = 107/324 (33%), Gaps = 40/324 (12%)

Query: 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASS 160
           LH+  +   TP +   V +D   + LW+ C+         A + +           +  S
Sbjct: 22  LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCH----------STQCS 71

Query: 161 TSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNS 220
            +    C          C      C           +  G L ED+L + +   +  +  
Sbjct: 72  RANTHQCLSCPAASRPGCHKNT--CGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLG 129

Query: 221 VQASV---IIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKD 277
              +V   +  C               G+ GLG   IS+P+ LA    ++  F+ C  + 
Sbjct: 130 PLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRY 189

Query: 278 DS--GRIFFGDQGPATQQSTSFLASNGKYIT---------YIIGVETCCIG--------- 317
            +  G I FGD     +Q  +    +    T         Y + V +  I          
Sbjct: 190 PTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNK 249

Query: 318 --SSCLKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSS 375
             S+ +  TS   ++ + +    L + VY+     F +Q+          P+  C+ S+ 
Sbjct: 250 ISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNK 309

Query: 376 QRLPKLPSVKLMFPQNNSFVVNNP 399
             +   PSV L+  + N  V    
Sbjct: 310 --INAYPSVDLVMDKPNGPVWRIS 331
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.96
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 96.9
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 91.22
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 85.95
2hs1_A99 HIV-1 protease; ultra-high resolution active site 85.93
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 82.74
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 81.77
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=9e-51  Score=402.18  Aligned_cols=267  Identities=23%  Similarity=0.355  Sum_probs=225.5

Q ss_pred             CceeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCC
Q 015211           90 SKTMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSH  169 (411)
Q Consensus        90 ~~~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~  169 (411)
                      ...++|.|+.+.+||++|.||||||+|.|++||||+++||+|.  .|....       |..++.|||++|+|++...   
T Consensus        45 ~~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~--~C~~~~-------C~~~~~y~~~~SsT~~~~~---  112 (370)
T 3psg_A           45 IGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV--YCSSLA-------CSDHNQFNPDDSSTFEATS---  112 (370)
T ss_dssp             SCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT--TCCSGG-------GTTSCCBCGGGCTTCEEEE---
T ss_pred             cceecceeccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECC--CCCCcc-------cCCCCCCCCccCcCcEECC---
Confidence            4567899999999999999999999999999999999999995  443223       4467899999999999854   


Q ss_pred             CCCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEec
Q 015211          170 RLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL  249 (411)
Q Consensus       170 ~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGL  249 (411)
                                     |.|.+.|++|  ++.|.+++|+|+|++.        .++++.|||+..+.+.++....+||||||
T Consensus       113 ---------------~~~~i~Yg~G--s~~G~~~~Dtv~ig~~--------~v~~~~Fg~a~~~~~~~~~~~~~dGIlGL  167 (370)
T 3psg_A          113 ---------------QELSITYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFLYYAPFDGILGL  167 (370)
T ss_dssp             ---------------EEEEEESSSC--EEEEEEEEEEEEETTE--------EEEEEEEEEECSCCCGGGGGCSCSEEEEC
T ss_pred             ---------------cEEEEEeCCc--eEEEEEEEEEEeeCCc--------ccCCeEEEEEEeecccccccCCccceecc
Confidence                           8999999997  5899999999999875        67899999999987765555678999999


Q ss_pred             CCCCCC------hHHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCe
Q 015211          250 GLGEIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSS  319 (411)
Q Consensus       250 g~~~~s------~~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~  319 (411)
                      |++.++      +..+|++||+| +++||+||.++  .+|.|+||++|+.+ .+.+.|+|+... .+|+|.+++|+||++
T Consensus       168 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~~-~~w~v~l~~i~v~g~  246 (370)
T 3psg_A          168 AYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE-GYWQITLDSITMDGE  246 (370)
T ss_dssp             SCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE-TTEEEEECEEESSSS
T ss_pred             CCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccccc-ceeEEEEeEEEECCE
Confidence            998765      46679999999 69999999985  57999999999987 567788887754 799999999999998


Q ss_pred             eec-cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeC
Q 015211          320 CLK-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNN  398 (411)
Q Consensus       320 ~~~-~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~  398 (411)
                      .+. ...+.+||||||++++||+++|++|.+++    ++.....      .+|.++|+....+|+|+|+| ||++++|++
T Consensus       247 ~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i----~a~~~~~------g~~~v~C~~~~~lP~i~f~~-~g~~~~l~~  315 (370)
T 3psg_A          247 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDI----GASENSD------GEMVISCSSIDSLPDIVFTI-DGVQYPLSP  315 (370)
T ss_dssp             EEECTTCEEEEECTTCCSEEEEHHHHHHHHHHT----TCEECTT------CCEECCGGGGGGCCCEEEEE-TTEEEEECH
T ss_pred             EEecCCCceEEEcCCCCcEECCHHHHHHHHHHh----CCcccCC------CcEEEECCCcccCCcEEEEE-CCEEEEECH
Confidence            764 35789999999999999999988887655    3332211      24889998877899999999 799999999


Q ss_pred             CeEEEEe
Q 015211          399 PVFVIYG  405 (411)
Q Consensus       399 ~~yi~~~  405 (411)
                      ++|+++.
T Consensus       316 ~~yi~~~  322 (370)
T 3psg_A          316 SAYILQD  322 (370)
T ss_dssp             HHHEEEC
T ss_pred             HHhcccC
Confidence            9999983
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 411
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-29
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 6e-20
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 8e-20
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-19
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 5e-19
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 8e-19
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-18
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-18
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 4e-18
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 7e-18
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 9e-18
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 1e-17
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 5e-17
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-16
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 6e-16
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-15
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-15
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-14
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-13
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-12
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-11
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-08
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  115 bits (287), Expect = 3e-29
 Identities = 45/326 (13%), Positives = 96/326 (29%), Gaps = 43/326 (13%)

Query: 102 LHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASS 160
           L+      G       + LD    L+W  CD     A +            +  +   ++
Sbjct: 15  LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIP----------CSSPTCLLAN 59

Query: 161 TSKHLSCSHRLCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNS 220
                 C    C          +PC            ++G L        +   +   + 
Sbjct: 60  AYPAPGCPAPSC----GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSK 115

Query: 221 VQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKAGLIRNSFSMCFDKDDSG 280
           V   V+  C   +    L      G+ GL    +++P+ +A A  + N F +C      G
Sbjct: 116 VNVGVLAACAPSKLLASLPR-GSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPG 174

Query: 281 RIFFGDQGPATQQSTSFLA-----SNGKYITYIIGVETCCIGSSCLK-----QTSFKAIV 330
              FG       Q T  +      + G    + I   +  +G + +        +   ++
Sbjct: 175 VAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVML 234

Query: 331 DSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKC--------CYKSS----SQRL 378
            +   +  L  +VY  +   F + +     +                CY +     +   
Sbjct: 235 STRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGG 294

Query: 379 PKLPSVKLMFPQNNSFVVNNPVFVIY 404
             +P+V+L     + + +     ++ 
Sbjct: 295 YAVPNVQLGLDGGSDWTMTGKNSMVD 320
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 81.1
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 80.91
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-46  Score=369.36  Aligned_cols=267  Identities=23%  Similarity=0.353  Sum_probs=225.0

Q ss_pred             eeeecCCCCceEEEEEEeCCCCeEEEEEEEcCCCceEEecC-CCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCC
Q 015211           92 TMSLGNDFGWLHYTWIDIGTPNVSFLVALDAGSDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHR  170 (411)
Q Consensus        92 ~~~l~~~~~~~y~~~i~iGtP~q~~~v~~DTGS~~~Wv~~~-C~~C~~~~~~~~~~~~~~~~~f~p~~SsT~~~~~C~~~  170 (411)
                      ..+|.|+.+.+||++|.||||||+|.|++||||+++||+|. |..|..          ..++.|||++|+|++...    
T Consensus        47 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~----------~~~~~yd~~~Sst~~~~~----  112 (370)
T d3psga_          47 DEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLAC----------SDHNQFNPDDSSTFEATS----  112 (370)
T ss_dssp             CCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGG----------TTSCCBCGGGCTTCEEEE----
T ss_pred             ccccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCccc----------ccccccCCCcccccccCC----
Confidence            46788999999999999999999999999999999999997 777753          246899999999999864    


Q ss_pred             CCCCCCCCCCCCCCCceeeeeCCCCceeeeeEEEEEEEeecCCCCcccccccccEEEEeEeeccCCCCCCCCCceEEecC
Q 015211          171 LCDLGTSCQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLG  250 (411)
Q Consensus       171 ~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~~~~D~v~l~~~~~~~~~~~~~~~~~fG~~~~~~g~~~~~~~~dGIlGLg  250 (411)
                                    |.|.+.|++|  ++.|.++.|++.+++.        .+.++.|||+....+.++.....+||+|||
T Consensus       113 --------------~~~~~~Yg~G--s~~G~~~~d~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~  168 (370)
T d3psga_         113 --------------QELSITYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFLYYAPFDGILGLA  168 (370)
T ss_dssp             --------------EEEEEESSSC--EEEEEEEEEEEEETTE--------EEEEEEEEEECSCCCGGGGGCSCSEEEECS
T ss_pred             --------------CcEEEEeCCc--eEEEEEEEEEEeeece--------eeeeeEEEEEeeccCceecccccccccccc
Confidence                          8999999998  6899999999999876        678999999998887766666779999999


Q ss_pred             CCCCC------hHHHHHhcCCC-cceeEEeecCC--CCceEEEccCCCCC-ceEeeeeecCCCceeEEEeeeeeEeCCee
Q 015211          251 LGEIS------VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT-QQSTSFLASNGKYITYIIGVETCCIGSSC  320 (411)
Q Consensus       251 ~~~~s------~~~~l~~~~~i-~~~FS~cL~~~--~~G~l~fG~~d~~~-~~~~p~v~~~~~~~~y~v~l~~i~vgg~~  320 (411)
                      ++..+      +..+|.++++| +++||+|+.++  .+|.|+||++|+.+ .+.+.|+|+... .+|.|.++++.|+|+.
T Consensus       169 ~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~-~~w~v~~~~i~v~g~~  247 (370)
T d3psga_         169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE-GYWQITLDSITMDGET  247 (370)
T ss_dssp             CGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE-TTEEEEECEEESSSSE
T ss_pred             cCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc-ceEEEEEeeEEeCCeE
Confidence            87654      46779999999 69999999874  46899999999987 567888887654 7999999999999987


Q ss_pred             ec-cCcccEEEecCCcccccCHHHHHHHHHHHHHhcccccccccCCCccceEeecCCCCCCCCeEEEEeCCCcEEEEeCC
Q 015211          321 LK-QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNP  399 (411)
Q Consensus       321 ~~-~~~~~~iiDSGTs~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~i~~~  399 (411)
                      +. .....+||||||++++||+++|++|.++|..    ......      +|.++|.....+|+|+|+| ||++|+|+++
T Consensus       248 ~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~----~~~~~~------~~~~~C~~~~~~P~l~f~f-~g~~~~l~~~  316 (370)
T d3psga_         248 IACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGA----SENSDG------EMVISCSSIDSLPDIVFTI-DGVQYPLSPS  316 (370)
T ss_dssp             EECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTC----EECTTC------CEECCGGGGGGCCCEEEEE-TTEEEEECHH
T ss_pred             EecCCCccEEEecCCceEeCCHHHHHHHHHHhCC----eeecCC------cEEEeccccCCCceEEEEE-CCEEEEEChH
Confidence            75 3567899999999999999998888776643    222222      3677887667899999999 8999999999


Q ss_pred             eEEEEeccc
Q 015211          400 VFVIYGTQV  408 (411)
Q Consensus       400 ~yi~~~~~~  408 (411)
                      +|+++.++.
T Consensus       317 ~yi~~~~~~  325 (370)
T d3psga_         317 AYILQDDDS  325 (370)
T ss_dssp             HHEEECSSC
T ss_pred             HeEEEcCCe
Confidence            999987654
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure