Citrus Sinensis ID: 015213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKSPTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHcccEEEEcccHHHHcccccccccEEEEEEEEcccccEEccccccEEEEEEEEccccEEEEEEEcHHHHHHHccccccEEEEEcccccccccccccEEEEcccccEEEEEEccccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEcccccHHHHHHHHccccEEEHHHHHHHcccccccccEEEEEEEEEcccccccccccEEEEEEEcccccccEEEEEEcHHHHHHHcccccEEEEEEcccccccccccEEEEEEccHHcEEEEccccccccEEEEEccccccccEEccccccHHHHHHHHHHHHHHcccHHcccccccHHcccccccccEEEccccccccccccccccccEEccHHHHHHHHHcccccccHcHHcHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccHccccccccHHHHHHccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MSNHQEDLSLLLSLQDkfletppgspsnpgssspgylsddgsprqrgqvdmSAFRNIVQDcldyepkpvdkikkpklskksndpevenfsglrirnpvvapselseRFSEIRFVRLSTIKnlllgdtlsGCWATVAVLTekghpktssigqnyciwklgcleentisvFLFGDAYQKNWKEHAGTVFALfncsvrkdakgpgfslsvSSASQIIKMGtsvdygvckgkrkdgmacntvinkrkgiycgyhrlkaSDRFITTrselkggnlrtafrsplnsegiylfdpltdrtnlqkpkqpvkVLSVEGLKKALSNAGKVTTNTHSQGIRFlnemagpktgnresikpgrqstnlekrksptvkpdpslvtnqqaddkrrktdqgqaladktqkgtgkmieldmvssdedf
Flexible Loop (DISEMBL)
MSNHQEDLSLLLSLQDKFLEtppgspsnpgssspgylSDDGSPRQRGQVDMSAFRNIVQDcldyepkpvdkikkpklskksndpevenfsglrirnpvvapselserfSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTekghpktssigQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGkrkdgmacntvinkrkgiycgyhrlkASDRFIttrselkggnlrtafrsplnsEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKAlsnagkvttnthSQGIRFlnemagpktgnresikpgrqstnlekrksptvkpdpslvtnqqaddkrrktdqgqaladktqkgtgkmieldmvssdedf
Low Complexity Region (SEG)
MSNHQEDlslllslQDKFLETppgspsnpgssspgYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEpkpvdkikkpklskkSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKSPTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF
Disordered region (IsUnstruct)
*****************************************************FRNIVQDCLDY*********************************VV****LSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTD************************************************************************************************************************
Disordered Region (DISOPRED)
******D******************************************************************************VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGH*****IGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSV************VSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHR****************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MSNHQEDLSLLLSLQDKFLE**************************GQVDMSAFRNIVQDCLDYEPKPVDKIKKP***********ENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKT*****************************************************KGTGKMIELDMVSSDEDF
Disordered Region (DISPRO)
*****EDLSLLLSLQDKFL******************************************************************VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTR******NLRT*FRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAG***********************************************GQALAD*TQKGTGKMIELDMV******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKSPTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q0VBD2	885	Protein MCM10 homolog OS=	yes	no	0.462	0.214	0.343	2e-28
Q5EAW4	860	Protein MCM10 homolog OS=	N/A	no	0.440	0.210	0.345	7e-28
Q28E45	845	Protein MCM10 homolog OS=	yes	no	0.440	0.214	0.335	8e-28
Q7L590	875	Protein MCM10 homolog OS=	yes	no	0.459	0.216	0.329	9e-27
Q5RHY1	833	Protein MCM10 homolog OS=	yes	no	0.440	0.217	0.324	4e-26
Q9VIE6	776	Protein MCM10 homolog OS=	yes	no	0.430	0.228	0.318	3e-18
O42709	593	DNA replication licensing	yes	no	0.304	0.210	0.317	4e-13
P32354	571	Minichromosome maintenanc	yes	no	0.447	0.322	0.257	2e-06

>sp|Q0VBD2|MCM10_MOUSE Protein MCM10 homolog OS=Mus musculus GN=Mcm10 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 86  VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
           VE FSGLR+R P V+ +E+S + +  + +RL  IK  +  + L    W T  V+  K  P
Sbjct: 263 VEAFSGLRLRRPRVSSTEMSRKMAGRKLIRLPQIKEKMATENLEETDWVTFGVILRKVTP 322

Query: 145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
           ++++ GQ + IWKL  L + T  +S+FLFGD ++  WK   GTV  L N +  K   G  
Sbjct: 323 QSATSGQTFSIWKLNDLHDLTQCVSLFLFGDVHKDLWKTEQGTVIGLLNANPMKPKDGLK 382

Query: 202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
              LS+    +++ MG ++D G CK K+K+G  C   +N     YC YH      +    
Sbjct: 383 EVCLSIDHPQKVLIMGEAMDLGACKAKKKNGEPCTQTVNLHDCEYCQYHIQAQYKKLSAK 442

Query: 262 RSELK----GGNLRTAFR 275
           R++L+    GG +   FR
Sbjct: 443 RTDLQSTFSGGRIPKKFR 460

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication.
Mus musculus (taxid: 10090)

>sp|Q5EAW4|MCM10_XENLA Protein MCM10 homolog OS=Xenopus laevis GN=mcm10 PE=1 SV=2

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 107/185 (57%), Gaps = 4/185 (2%)

Query: 86  VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
           VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  P
Sbjct: 238 VEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITP 297

Query: 145 KTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
           ++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G  
Sbjct: 298 QSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 357

Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
              LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  + 
Sbjct: 358 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 417

Query: 262 RSELK 266
           R++L+
Sbjct: 418 RADLQ 422

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication.

Xenopus laevis (taxid: 8355)

>sp|Q28E45|MCM10_XENTR Protein MCM10 homolog OS=Xenopus tropicalis GN=mcm10 PE=2 SV=1

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 108/185 (58%), Gaps = 4/185 (2%)

Query: 86  VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
           VE FSGLR+R P V+ SE+  + +  + +RL+ ++N ++ + L    W T  V+ +K  P
Sbjct: 225 VEKFSGLRLRKPRVSSSEMERKMNGRKLIRLAQLQNKIVTEKLEDEDWVTFGVIVKKITP 284

Query: 145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
           ++S+ G+ + IW+L  L+  +  +S+FLFGD ++++WK   GTV  L N +  K  +G  
Sbjct: 285 QSSNNGKTFSIWRLNDLKNLDKYVSLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 344

Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
              LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  + 
Sbjct: 345 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 404

Query: 262 RSELK 266
           R++L+
Sbjct: 405 RADLQ 409

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication.

Xenopus tropicalis (taxid: 8364)

>sp|Q7L590|MCM10_HUMAN Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2

 Score =  121 bits (304), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 8/197 (4%)

Query: 86  VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
           VE FSGLR+R P V+ +E++++ +  + +RLS IK  +  + L    W T  V+ +K  P
Sbjct: 247 VEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTP 306

Query: 145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
           ++ + G+ + IWKL  L + T  +S+FLFG+ ++  WK   GTV  + N +  K   G  
Sbjct: 307 QSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSE 366

Query: 202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
              LS+    +++ MG ++D G CK K+K+G  C   +N R   YC YH      +    
Sbjct: 367 EVCLSIDHPQKVLIMGEALDLGTCKAKKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAK 426

Query: 262 RSELK----GGNLRTAF 274
           R++L+    GG +   F
Sbjct: 427 RADLQSTFSGGRIPKKF 443

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication.

Homo sapiens (taxid: 9606)

>sp|Q5RHY1|MCM10_DANRE Protein MCM10 homolog OS=Danio rerio GN=mcm10 PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 104/185 (56%), Gaps = 4/185 (2%)

Query: 86  VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
           VE FSGLR+R P ++  ++ ++ +  + +RLS + + L  D L    W T AV+  K  P
Sbjct: 218 VEKFSGLRLRKPRLSSIDIEQKMASRKLIRLSQLPDRLARDNLEDSDWVTFAVIINKITP 277

Query: 145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
           ++ + G+ + IWKL  L   E  +S+FLFG  +   WK   GTV  + N +  K+ +G  
Sbjct: 278 QSKNNGKTFSIWKLNDLHNLEVNVSLFLFGSVHTDLWKTDTGTVIGILNPNPMKNKEGSN 337

Query: 203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
             SL+V    +++ +G ++D+G CK K+K+G +C  ++N  +  +C YH      +  + 
Sbjct: 338 ELSLTVDHPQKVLIIGEAMDFGTCKAKKKNGDSCTQLVNLYECQFCQYHVKAQYKKMSSK 397

Query: 262 RSELK 266
           R+EL+
Sbjct: 398 RAELQ 402

Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication. Additionally, plays a role in preventing DNA damage during replication.

Danio rerio (taxid: 7955)

>sp|Q9VIE6|MCM10_DROME Protein MCM10 homolog OS=Drosophila melanogaster GN=Mcm10 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 91  GLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIG 150
           GLR+ NP+V+ S L ER +  + V  S +   +    L+  W     L  K   K +  G
Sbjct: 193 GLRMINPLVSSSLLQERMTGRKPVPFSGVAYHIERGDLAKDWVIAGALVSKNPVKNTKKG 252

Query: 151 QNYCIWKLGCL--EENTISVFLFGDAYQKNWKEHAGTVFALFNCSV--RKDAKGPGFSLS 206
             Y  WKL  L  E  TIS+FLF +A++  WK   G   A+ N ++  R+        LS
Sbjct: 253 DPYSTWKLSDLRGEVKTISLFLFKEAHKSLWKTAEGLCLAVLNPTIFERRAGSSDVACLS 312

Query: 207 VSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELK 266
           + S+ +++ +G S D G C+  +K+G  C +V+N     YC +H +K     ++ RSEL+
Sbjct: 313 IDSSQKVMILGQSKDLGTCRATKKNGDKCTSVVNLTDCDYCIFH-VKQEYGKMSRRSELQ 371

Query: 267 GG 268
             
Sbjct: 372 SA 373

Proposed to be involved in DNA replication and to participate in the activation of the pre-replication complex (pre-RC). May be involved in chromosome condensation.

Drosophila melanogaster (taxid: 7227)

>sp|O42709|MCM10_SCHPO DNA replication licensing factor mcm10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcm10 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)

Query: 132 WATVAVLTEKGHPKTSSIGQNYCI-------WKLGCLEENTISVFLFGDAYQKNWKEHAG 184
           +  + ++      + +  G  YC+       W+L C        FLFG A+++ WK  +G
Sbjct: 204 YVVMGIVASNSGTRETVNGNKYCMLTLTDLKWQLEC--------FLFGKAFERYWKIQSG 255

Query: 185 TVFALFNCSVRKDAKGPG---FSLSVSSASQII-KMGTSVDYGVCKGKRKDGMACNTVIN 240
           TV AL N  V K  K P    FSL + S   ++ ++G S   G C  +RK G  C   ++
Sbjct: 256 TVIALLNPEVLK-PKNPDIGRFSLKLDSEYDVLLEIGRSKHLGYCSSRRKSGELCKHWLD 314

Query: 241 KRKGIYCGYHRLKASDRFITTRSEL 265
           KR G  C YH   A  R ++TR+E 
Sbjct: 315 KRAGDVCEYHVDLAVQRSMSTRTEF 339

Required for DNA synthesis. Required for entry into or completion of S phase. Involved in DNA replication and seems to participate in the activation of the pre-replication complex (pre-RC) and in transcription elongation. May play a role as key coordinator in assembling the replication fork. Proposed to function at replication origins following the binding of the mcm2-7 complex prior to the recruitment of sna41. Probably is required to stimulate phosphorylation of the mcm2-7 complex by the dfp1-hsk1 kinase complex. May recruit the DNA polymerase alpha:primase complex to replication origins and is required to maintain it on chromatin independently of sna41. May have primase activity. Binds to single-stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32354|MCM10_YEAST Minichromosome maintenance protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM10 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 85  EVENFSGLRIRNPVVAPSELSERFSEIRFVRL----STIKNLLLGDTLSGCWATVAVLTE 140
           E+E+FS L ++   +   +L     EI+ +RL    + I+     +     WATV +++ 
Sbjct: 156 ELESFSNLWVKKRYIPEDDLKRALHEIKILRLGKLFAKIRPPKFQEPEYANWATVGLISH 215

Query: 141 KGHPKTSSIGQNYCIWKLGCLE-ENTISVFLFG-DAYQKNWKEHAGTVFALFNCSV---R 195
           K   K +S  +    +     + ++T+ V++FG    ++ +    G V A+ N  V   R
Sbjct: 216 KSDIKFTSSEKPVKFFMFTITDFQHTLDVYIFGKKGVERYYNLRLGDVIAILNPEVLPWR 275

Query: 196 KDAKG---PGFSLSVSSASQ-IIKMGTSVDYGVCK-GKRKDGMACNTVINKRKGIYCGYH 250
              +G     F+L +S   + I+++G+S D G C    +K    C + IN      C YH
Sbjct: 276 PSGRGNFIKSFNLRISHDFKCILEIGSSRDLGWCPIVNKKTHKKCGSPINISLHKCCDYH 335

Query: 251 RLKASDRFITTRSELKGG 268
           R          R EL GG
Sbjct: 336 REVQFRGTSAKRIELNGG 353

Required for DNA synthesis. Required for entry into or completion of S phase. Involved in DNA replication and seems to participate in the activation of the pre-replication complex (pre-RC) and in transcription elongation. May play a role as a key coordinator in assembling the replication fork. Proposed to function at replication origins following the binding of the MCM2-7 complex prior to the recruitment of CDC45. Probably is required to stimulate phosphorylation of the MCM2-7 complex by the CDC7-DBF4 kinase complex. May recruit the DNA polymerase alpha:primase complex to replication origins and is required to maintain it on chromatin independently of CDC45. May also play a role in transcriptional silencing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
225428019	403	PREDICTED: uncharacterized protein LOC10	0.978	0.997	0.669	1e-149
297744614	339	unnamed protein product [Vitis vinifera]	0.790	0.958	0.724	1e-134
449458612	413	PREDICTED: uncharacterized protein LOC10	0.929	0.924	0.631	1e-131
42569202	396	minichromosome maintenance protein 10 [A	0.963	1.0	0.590	1e-126
356507813	409	PREDICTED: uncharacterized protein LOC10	0.973	0.977	0.603	1e-125
297824941	392	hypothetical protein ARALYDRAFT_480950 [	0.914	0.959	0.581	1e-123
357467515	412	MCM10-like protein [Medicago truncatula]	0.978	0.975	0.590	1e-121
255579967	348	conserved hypothetical protein [Ricinus	0.742	0.876	0.690	1e-115
224105165	283	predicted protein [Populus trichocarpa]	0.678	0.985	0.732	1e-110
147768426	313	hypothetical protein VITISV_026638 [Viti	0.759	0.996	0.566	1e-103

>gi|225428019|ref|XP_002277777.1| PREDICTED: uncharacterized protein LOC100250259 [Vitis vinifera]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/412 (66%), Positives = 328/412 (79%), Gaps = 10/412 (2%)

Query: 1   MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQD 60
           MSNHQEDL LLLSL+D+ LETPP SP      SPGYLSDDGSP +  Q DMS FRN VQD
Sbjct: 1   MSNHQEDLDLLLSLEDRVLETPPHSPGQ----SPGYLSDDGSPTRTRQSDMSVFRNAVQD 56

Query: 61  CLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIK 120
           CLD+EP+ V K   P L K  N+ +VE FSGLRIRN +V+  ELS +FS+IRFVRLS IK
Sbjct: 57  CLDFEPESVKKA--PNLKK--NETDVEKFSGLRIRNQLVSSVELSSQFSDIRFVRLSAIK 112

Query: 121 NLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWK 180
           NLL+GDTLSGCWATV VLTEKG+PKTSS G+NYCIWK+GCL+E+T+SVFLFGDAYQKNWK
Sbjct: 113 NLLVGDTLSGCWATVGVLTEKGNPKTSSAGKNYCIWKIGCLDEDTVSVFLFGDAYQKNWK 172

Query: 181 EHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVIN 240
           E AGTVFALFNCSVRKDA G GFSLSV S  QI+K+GTSVDYGVCKGKRKDGMAC  VIN
Sbjct: 173 EQAGTVFALFNCSVRKDAMGNGFSLSVYSPGQILKLGTSVDYGVCKGKRKDGMACTLVIN 232

Query: 241 KRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQ 300
           KR+G+YC YH+ KAS+++   R+ELKGGNL+TAFR PLNS+G+YL DPL D+TN+++P Q
Sbjct: 233 KRRGVYCRYHKSKASEKYSIMRTELKGGNLKTAFRDPLNSKGVYLVDPLADKTNVKRPMQ 292

Query: 301 PVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKS 360
           P+K+LSV+GLKKALSNAGKVTTN HSQGIRFL E+ G K G++ + +    +  + KR S
Sbjct: 293 PLKLLSVDGLKKALSNAGKVTTNAHSQGIRFLTEITG-KVGSKITKEGSGPNQQVAKRPS 351

Query: 361 PTVKPDPSLVT-NQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF 411
            T++ D S V  NQQ   KR+K +Q Q  + K +  T KMIEL+ VSSDE+F
Sbjct: 352 TTIRTDSSAVARNQQPGTKRKKMEQEQPSSGKAKMATEKMIELEFVSSDEEF 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744614|emb|CBI37876.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 244/337 (72%), Positives = 282/337 (83%), Gaps = 12/337 (3%)

Query: 1   MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQD 60
           MSNHQEDL LLLSL+D+ LETPP         SPGYLSDDGSP +  Q DMS FRN VQD
Sbjct: 1   MSNHQEDLDLLLSLEDRVLETPP--------HSPGYLSDDGSPTRTRQSDMSVFRNAVQD 52

Query: 61  CLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIK 120
           CLD+EP+ V K   P L K  N+ +VE FSGLRIRN +V+  ELS +FS+IRFVRLS IK
Sbjct: 53  CLDFEPESVKK--APNLKK--NETDVEKFSGLRIRNQLVSSVELSSQFSDIRFVRLSAIK 108

Query: 121 NLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWK 180
           NLL+GDTLSGCWATV VLTEKG+PKTSS G+NYCIWK+GCL+E+T+SVFLFGDAYQKNWK
Sbjct: 109 NLLVGDTLSGCWATVGVLTEKGNPKTSSAGKNYCIWKIGCLDEDTVSVFLFGDAYQKNWK 168

Query: 181 EHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVIN 240
           E AGTVFALFNCSVRKDA G GFSLSV S  QI+K+GTSVDYGVCKGKRKDGMAC  VIN
Sbjct: 169 EQAGTVFALFNCSVRKDAMGNGFSLSVYSPGQILKLGTSVDYGVCKGKRKDGMACTLVIN 228

Query: 241 KRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQ 300
           KR+G+YC YH+ KAS+++   R+ELKGGNL+TAFR PLNS+G+YL DPL D+TN+++P Q
Sbjct: 229 KRRGVYCRYHKSKASEKYSIMRTELKGGNLKTAFRDPLNSKGVYLVDPLADKTNVKRPMQ 288

Query: 301 PVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAG 337
           P+K+LSV+GLKKALSNAGKVTTN HSQGIRFL E+ G
Sbjct: 289 PLKLLSVDGLKKALSNAGKVTTNAHSQGIRFLTEITG 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458612|ref|XP_004147041.1| PREDICTED: uncharacterized protein LOC101219022 [Cucumis sativus] gi|449489650|ref|XP_004158375.1| PREDICTED: uncharacterized LOC101219022 [Cucumis sativus]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 252/399 (63%), Positives = 299/399 (74%), Gaps = 17/399 (4%)

Query: 17  KFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEPKPVDKIKKPK 76
           K LETPPG+P  P +S    LSDD SPR+ G  DMS FRN V+DCLDY+  P +K  K  
Sbjct: 17  KVLETPPGTP--PHTSD--LLSDDESPRRAGPADMSIFRNAVKDCLDYDHIPTEKNGKTN 72

Query: 77  LSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVA 136
            SK SND  +E FSGLR+RN VVAP+EL +RFS+IRFVRLSTIKN+L+GDTLSGCW TV 
Sbjct: 73  RSKASNDVSIEKFSGLRMRNQVVAPAELRDRFSDIRFVRLSTIKNMLIGDTLSGCWVTVG 132

Query: 137 VLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRK 196
           VLTEKG PKTSS G+ YCIWKL CL+ENT+SVFLFGDAY++N KE AGTVFALFN +VRK
Sbjct: 133 VLTEKGSPKTSSTGKAYCIWKLSCLDENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRK 192

Query: 197 DAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASD 256
           DA G GFSLSV   +Q++ MGTS DYGVCKGK KDG+AC  VIN+R+GIYC YH+ KAS+
Sbjct: 193 DATGMGFSLSVYQPNQLLMMGTSDDYGVCKGK-KDGIACTAVINRRRGIYCKYHKSKASE 251

Query: 257 RF-ITTRSELKGGNLRTAFRSPLNS-EGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKAL 314
           ++  TTR+ELKGGNLRTAFR   +  EG+Y+ DPL  +   +KP QP+K+LSVEGLK+AL
Sbjct: 252 KYSTTTRTELKGGNLRTAFRDYHHKPEGVYMVDPLAGKVTSKKPTQPIKLLSVEGLKRAL 311

Query: 315 SNAGKVTTNTHSQGIRFLNEMAGPKTG---NRESIKPGRQSTNLEKRKSPTVKPDPSLVT 371
           SNA KVTTN HSQG RFL E+ G  T    N+ES K  +Q  N E  K+  +K   S V 
Sbjct: 312 SNADKVTTNAHSQGKRFLAEITGKLTSQSVNKESTKRSQQRINSE--KTSILK---STVE 366

Query: 372 NQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDED 410
           NQQ D KR+KTD     A+KT K  GKMIELD VSS++D
Sbjct: 367 NQQPDPKRKKTD--HTPANKTTKDIGKMIELDYVSSEDD 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569202|ref|NP_179694.2| minichromosome maintenance protein 10 [Arabidopsis thaliana] gi|52354259|gb|AAU44450.1| hypothetical protein AT2G20980 [Arabidopsis thaliana] gi|60547717|gb|AAX23822.1| hypothetical protein At2g20980 [Arabidopsis thaliana] gi|330252014|gb|AEC07108.1| minichromosome maintenance protein 10 [Arabidopsis thaliana]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/410 (59%), Positives = 300/410 (73%), Gaps = 14/410 (3%)

Query: 1   MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQD 60
           M N QEDL LLLSL D+ LETPPGSPS    ++PGYL+DD SP++RG  D+S FR++VQD
Sbjct: 1   MENDQEDLELLLSLDDRVLETPPGSPS----AAPGYLTDDESPKRRGHSDLSDFRSVVQD 56

Query: 61  CLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIK 120
           C+DY PKP+ K  KPK S  SN  ++E FSGLRIRN +++P+E+S+ FS+IRFVRL TIK
Sbjct: 57  CIDYNPKPIAKNTKPKGSNNSNTNDIEKFSGLRIRNQLLSPAEISDLFSDIRFVRLPTIK 116

Query: 121 NLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWK 180
           NLL+GD LSGCWAT+ V+TEKG PKTSSIGQ Y IWK+G L EN +S+FLFGDAY+KN  
Sbjct: 117 NLLMGDKLSGCWATMGVITEKGQPKTSSIGQAYGIWKIGSLNENNVSLFLFGDAYKKNET 176

Query: 181 EHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVIN 240
           E AGTVF LFNCS+RKD  G  FSLSV+SA Q++K+G S DYGVC  KRKDG  C +V+N
Sbjct: 177 EKAGTVFGLFNCSLRKDNGGREFSLSVNSAKQMVKLGVSADYGVCTAKRKDGTTCTSVVN 236

Query: 241 KRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQ 300
           KR+G +C  H+L ASD+F T R+ELKGGNLRTAFR  L S+GIY  +P  DR+  +K  Q
Sbjct: 237 KRQGAFCKIHKLNASDKFATMRTELKGGNLRTAFRD-LKSQGIYTVEPPADRSGNKKTTQ 295

Query: 301 PVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKS 360
           PV+VLSVEGL+KALS A KVT N HSQGIRFLNEMA  K     + K    + + EKRK+
Sbjct: 296 PVRVLSVEGLRKALSGADKVTPNVHSQGIRFLNEMARQKASKNVNKKSEAVNKSTEKRKA 355

Query: 361 PTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDED 410
            T +      T    + KR+KT+  +   +  +  TGKM+ LD  SSDE+
Sbjct: 356 STKE------TQVNGEPKRKKTEHRK---ETPEISTGKMMLLDFCSSDEE 396

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507813|ref|XP_003522658.1| PREDICTED: uncharacterized protein LOC100527758 [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/419 (60%), Positives = 311/419 (74%), Gaps = 19/419 (4%)

Query: 1   MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQD 60
           M++H+EDL LLLSL ++  ETPP SP+   S       +  + R+R + DMS F++ +QD
Sbjct: 2   MTSHEEDLDLLLSLDERVAETPPSSPTI--SDDDDDELELPNQRERDKPDMSVFKSALQD 59

Query: 61  CLDYEP-KPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTI 119
           CL Y+P KP +K   P ++    D  +E FSGLRIRN ++ P+EL E FS+IRFVRLS I
Sbjct: 60  CLPYDPPKPTNK---PVINV---DSHLEKFSGLRIRNQLLTPAELKEHFSDIRFVRLSVI 113

Query: 120 KNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW 179
           KN L+GDT+SG WATV VLTEKG  KTSS G++YCIWK+GCL+E T+S+FLFGDAYQ N 
Sbjct: 114 KNSLVGDTVSGSWATVGVLTEKGTQKTSSTGKSYCIWKIGCLDETTVSLFLFGDAYQMNM 173

Query: 180 KEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVI 239
           +E AGTVFALFN +VRKD  G GFSLS+ S  QI+KMGTSVDYGVCKGKR DGMAC  VI
Sbjct: 174 QEQAGTVFALFNSTVRKDNAGNGFSLSIYSTRQIMKMGTSVDYGVCKGKRTDGMACTLVI 233

Query: 240 NKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFR--SPLNSEGIYLFDPLTDRTNLQK 297
           NKR G YC YH+ KAS+++ + R+ELKGGNLRTAFR    L SEGIYL DPL D+TNL+K
Sbjct: 234 NKRHGTYCKYHKSKASEKYSSMRTELKGGNLRTAFRPMGYLKSEGIYLVDPLADKTNLKK 293

Query: 298 PKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAG---PKTGNRESIKPGRQSTN 354
             QPVK+LSV+G++KALSNAGKVTT +HSQGIRFL+E+A    PK  N+ S  P  Q+  
Sbjct: 294 -SQPVKLLSVDGIRKALSNAGKVTTASHSQGIRFLSEVAAKSDPKMKNKGSKFPNVQNKW 352

Query: 355 LEKRKS--PTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF 411
            EKRKS  P V   P ++ N+Q+ +KR K D GQ LADKT K   KMIE+D+VSSDEDF
Sbjct: 353 TEKRKSSFPNVGSSP-VIGNRQSGEKRIKPD-GQVLADKTLKRIEKMIEIDLVSSDEDF 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824941|ref|XP_002880353.1| hypothetical protein ARALYDRAFT_480950 [Arabidopsis lyrata subsp. lyrata] gi|297326192|gb|EFH56612.1| hypothetical protein ARALYDRAFT_480950 [Arabidopsis lyrata subsp. lyrata]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/394 (58%), Positives = 285/394 (72%), Gaps = 18/394 (4%)

Query: 17  KFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEPKPVDKIKKPK 76
           + LETPPGSPS    ++P YL+DD SP++RG  D+S FR++VQDC+DY+PKPV K  KPK
Sbjct: 17  RVLETPPGSPS----AAPRYLTDDESPKRRGHSDLSDFRSVVQDCIDYDPKPVAKNTKPK 72

Query: 77  LSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVA 136
            S  SN  +++ FSGLRIRN +++P+E+S+ FS+IRFVRL TIKNLL+GD LSGCWAT+ 
Sbjct: 73  GSNNSNANDLDKFSGLRIRNQLLSPAEISDLFSDIRFVRLPTIKNLLMGDKLSGCWATMG 132

Query: 137 VLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRK 196
           VLTEKG PKTSSIGQ Y IWK+G L ENT+S+FLFGDAY+KN  E AGTVF L NCSVRK
Sbjct: 133 VLTEKGQPKTSSIGQPYGIWKIGSLNENTVSLFLFGDAYKKNETEKAGTVFGLLNCSVRK 192

Query: 197 DAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASD 256
           D  G  FSLSV+SA Q++K+G S DYGVC  KRKDG  C +V+NKR+G +C  H+L ASD
Sbjct: 193 DKGGRDFSLSVNSAKQMVKLGVSADYGVCTAKRKDGTTCTSVVNKRQGAFCKIHKLNASD 252

Query: 257 RFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQPVKVLSVEGLKKALSN 316
           +F T R+ELKGGNLRTAFR P  S+GIY  +P  DR+  +K  QPV+VLSVEGL+KALS 
Sbjct: 253 KFATMRTELKGGNLRTAFRDP-KSQGIYTVEPPADRSGNKKATQPVRVLSVEGLRKALSG 311

Query: 317 AGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKSPTVKPDPSLVTNQQAD 376
           A KVT N HSQGIRFLNEMA  K     + K    + + EKRK  T +      T  + +
Sbjct: 312 ADKVTPNVHSQGIRFLNEMARQKASKNVNKKSEAVNKSTEKRKVSTKE------TQVKGE 365

Query: 377 DKRRKTDQGQALADKTQKGTGKMIELDMVSSDED 410
            KR+KT+  +   +       KM+ LD  SSDE+
Sbjct: 366 PKRKKTEDRRETPE-------KMMVLDFCSSDEE 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467515|ref|XP_003604042.1| MCM10-like protein [Medicago truncatula] gi|355493090|gb|AES74293.1| MCM10-like protein [Medicago truncatula]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/418 (59%), Positives = 303/418 (72%), Gaps = 16/418 (3%)

Query: 2   SNHQ-EDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDG-SPRQRGQVDMSAFRNIVQ 59
           SNH+ EDL LLLSL D+  ETPP SPS      P  + DD  S + R + DMS FR+ VQ
Sbjct: 3   SNHEHEDLDLLLSLDDRVPETPPASPS------PLDVDDDAVSYKHREKPDMSVFRDAVQ 56

Query: 60  DCLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTI 119
           DCL  +P   +   K      ++DP+++ FSGLRI N  + P+EL E   +IRFVRL  I
Sbjct: 57  DCLHSQPSNPNPNPKSITKPLTDDPQLDKFSGLRITNQCLTPAELRESVQDIRFVRLPVI 116

Query: 120 KNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW 179
           KNL+ GD+ SG W TV VLTEKG  KTSS G++YCIWK+G L+ENTIS+FLFG+AYQ+N 
Sbjct: 117 KNLVNGDSFSGSWVTVGVLTEKGIQKTSSNGKSYCIWKIGSLDENTISLFLFGNAYQRNC 176

Query: 180 KEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVI 239
           +E  GTVFALFN +VRKDAKG GFSLS+ S +QI+KMGTSVDYGVCKGKR DGM+C   I
Sbjct: 177 QEKEGTVFALFNSTVRKDAKGNGFSLSIYSPNQIMKMGTSVDYGVCKGKRADGMSCTLAI 236

Query: 240 NKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAF--RSPLNSEGIYLFDPLTDRTNLQK 297
           NKR+G YC YH+ K+S+++ T R+ELKGGNLRTAF  R  L SEGIYL DPL D+TNL+K
Sbjct: 237 NKRQGTYCKYHKSKSSEKYSTVRTELKGGNLRTAFRPRDYLKSEGIYLVDPLADKTNLKK 296

Query: 298 PKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAG---PKTGNRESIKPGRQSTN 354
            K PVK+LSV+G++KALSNAGKVTT +HSQGIRFL+E+AG   PK   +E   P  QS  
Sbjct: 297 SK-PVKLLSVDGIRKALSNAGKVTTASHSQGIRFLSEVAGKFDPKMMKKEPKTPNDQSKC 355

Query: 355 LEKRKSPTVKPD-PSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDEDF 411
             KRKS +V     S++ NQQ D K+ KT++ Q   DK  K TGKMIELD++SSDEDF
Sbjct: 356 TTKRKSSSVNMGYSSVIRNQQLDVKKAKTER-QVFVDKATKSTGKMIELDLISSDEDF 412

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579967|ref|XP_002530818.1| conserved hypothetical protein [Ricinus communis] gi|223529610|gb|EEF31558.1| conserved hypothetical protein [Ricinus communis]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/307 (69%), Positives = 261/307 (85%), Gaps = 2/307 (0%)

Query: 1   MSNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQD 60
           MS+HQ+DL LLLSLQD+ LETPPGSPSN  ++S G+LSDD SPR+RGQ D+S FR+ VQD
Sbjct: 1   MSSHQDDLDLLLSLQDRVLETPPGSPSNLNANSLGFLSDDESPRRRGQADLSVFRDAVQD 60

Query: 61  CLDY-EPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTI 119
           CL++ + KPV K +K K S+KSN+  +E +SGLRIRN +V P+ELSERFS+IRFVRL  I
Sbjct: 61  CLNHHDLKPVGKAEKLKQSRKSNEAHIEKYSGLRIRNQLVTPAELSERFSDIRFVRLPAI 120

Query: 120 KNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW 179
           KNLL+GDT+SGCWATV VLTEKG+P+TSS+G++Y IWK+GCL+ENTIS+FLFGDAYQ+N 
Sbjct: 121 KNLLVGDTISGCWATVGVLTEKGNPRTSSVGKSYSIWKIGCLDENTISLFLFGDAYQQNC 180

Query: 180 KEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVI 239
           KE AGTVFALFNC+VRKD  G GFSLS+ S +Q++KMGTS DYGVCKGKRKDGM+C +VI
Sbjct: 181 KEQAGTVFALFNCTVRKDNTG-GFSLSLYSPNQVLKMGTSTDYGVCKGKRKDGMSCTSVI 239

Query: 240 NKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPK 299
           NKR+GIYC +H+ KAS+ F T R+ELKGGNLRTAFR PL S+GI++ DPL DRTN +  +
Sbjct: 240 NKRQGIYCRFHKSKASEIFSTKRTELKGGNLRTAFRDPLKSQGIHIIDPLADRTNNKNSR 299

Query: 300 QPVKVLS 306
           QPV+ LS
Sbjct: 300 QPVQFLS 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105165|ref|XP_002313710.1| predicted protein [Populus trichocarpa] gi|222850118|gb|EEE87665.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/280 (73%), Positives = 232/280 (82%), Gaps = 1/280 (0%)

Query: 2   SNHQEDLSLLLSLQDKFLETPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQDC 61
           S+HQEDL LLLSLQD+ LETPPGSPSN  S SPGYLSDDGSPR++GQ D+S FR+ VQDC
Sbjct: 3   SSHQEDLDLLLSLQDRVLETPPGSPSNHHSLSPGYLSDDGSPRRKGQADLSVFRDAVQDC 62

Query: 62  LDYEPKPVDKI-KKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIK 120
           LDYEPKPV K  KK  + K S +  VE +SGLRIRN  V   ELSERFSEIRFVRL TIK
Sbjct: 63  LDYEPKPVVKAGKKLNVLKNSTEANVEKYSGLRIRNQSVTAVELSERFSEIRFVRLPTIK 122

Query: 121 NLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWK 180
           NLL+GDTL GCWATV VL EKG PKTSS+G++YCIWK G L+E++ISVFLFGDAYQ+N K
Sbjct: 123 NLLMGDTLMGCWATVGVLIEKGSPKTSSVGKSYCIWKFGSLDESSISVFLFGDAYQQNCK 182

Query: 181 EHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVIN 240
           E AGTVFALFNC+VRKD  G GFSLSV SA+QI+KMGTS+DYGVCKGKRKDG+ C  VIN
Sbjct: 183 EQAGTVFALFNCTVRKDNVGTGFSLSVFSANQILKMGTSIDYGVCKGKRKDGLPCTLVIN 242

Query: 241 KRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNS 280
           KR+G+YC YH  K S+RF T R+ELKGGNL+TAFR PL S
Sbjct: 243 KRQGMYCRYHNSKTSERFSTVRTELKGGNLKTAFRDPLKS 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768426|emb|CAN73626.1| hypothetical protein VITISV_026638 [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/362 (56%), Positives = 244/362 (67%), Gaps = 50/362 (13%)

Query: 51  MSAFRNIVQDCLDYEPKPVDKIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSE 110
           MS FRN VQDCLD+EP+ V K   P L K  N+ +VE FSGLRIRN +V+  ELS +FS+
Sbjct: 1   MSVFRNAVQDCLDFEPESVKK--APNLKK--NETDVEKFSGLRIRNQLVSSVELSSQFSD 56

Query: 111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFL 170
           IRFVRLS IKNLL+GDTLSGCWATV VLTEKG+PKTSS G+NYCIWK+GCL+E+T+SVFL
Sbjct: 57  IRFVRLSAIKNLLVGDTLSGCWATVGVLTEKGNPKTSSAGKNYCIWKIGCLDEDTVSVFL 116

Query: 171 FGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRK 230
           FGDAYQKNWKE AGTVFALFNCSVRKDA G GFSLSV S  QI+K+GTSVDYGVCKGKRK
Sbjct: 117 FGDAYQKNWKEQAGTVFALFNCSVRKDAMGNGFSLSVYSPGQILKLGTSVDYGVCKGKRK 176

Query: 231 DGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLT 290
           DGMAC  VINK          + +    +    +    NL+TAFR PLNS+G+YL DPL 
Sbjct: 177 DGMACTLVINKTPDDLTQAPCVISG--VVGCIVDTINRNLKTAFRDPLNSKGVYLVDPLA 234

Query: 291 DRTNLQKPKQPVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGR 350
           D+TN+++P QP+K+LSV+GLKKAL                                    
Sbjct: 235 DKTNVKRPMQPLKLLSVDGLKKAL------------------------------------ 258

Query: 351 QSTNLEKRKSPTVKPDPSLVT-NQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDE 409
                  R S T++ D S V  NQQ   KR+K +Q Q  + K +  T KMIEL+ VSSDE
Sbjct: 259 -------RPSTTIRTDSSAVARNQQPGTKRKKMEQEQPSSGKAKMATEKMIELEFVSSDE 311

Query: 410 DF 411
           +F
Sbjct: 312 EF 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TAIR|locus:2047067	396	MCM10 "AT2G20980" [Arabidopsis	0.963	1.0	0.536	3e-108
UNIPROTKB|Q5EAW4	860	mcm10 "Protein MCM10 homolog"	0.440	0.210	0.345	1.4e-27
UNIPROTKB|F1N1H5	863	MCM10 "Uncharacterized protein	0.472	0.224	0.321	3.2e-27
ZFIN|ZDB-GENE-041210-42	833	mcm10 "minichromosome maintena	0.437	0.216	0.333	9.6e-27
UNIPROTKB|F1PEN5	875	MCM10 "Uncharacterized protein	0.459	0.216	0.340	2.3e-26
RGD|1311330	889	Mcm10 "minichromosome maintena	0.462	0.213	0.343	2.4e-26
UNIPROTKB|Q28E45	845	mcm10 "Protein MCM10 homolog"	0.440	0.214	0.335	2.8e-26
MGI|MGI:1917274	885	Mcm10 "minichromosome maintena	0.462	0.214	0.343	5e-26
UNIPROTKB|F1NPY4	860	MCM10 "Uncharacterized protein	0.440	0.210	0.335	9.9e-26
UNIPROTKB|Q5T670	855	MCM10 "Protein MCM10 homolog"	0.459	0.221	0.329	7.1e-25

TAIR|locus:2047067 MCM10 "AT2G20980" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 220/410 (53%), Positives = 275/410 (67%)

Query:     1 MSNHQEDXXXXXXXQDKFLETXXXXXXXXXXXXXXYLSDDGSPRQRGQVDMSAFRNIVQD 60
             M N QED        D+ LET              YL+DD SP++RG  D+S FR++VQD
Sbjct:     1 MENDQEDLELLLSLDDRVLETPPGSPSAAPG----YLTDDESPKRRGHSDLSDFRSVVQD 56

Query:    61 CLDYEXXXXXXXXXXXXXXXSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIK 120
             C+DY                SN  ++E FSGLRIRN +++P+E+S+ FS+IRFVRL TIK
Sbjct:    57 CIDYNPKPIAKNTKPKGSNNSNTNDIEKFSGLRIRNQLLSPAEISDLFSDIRFVRLPTIK 116

Query:   121 NLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWK 180
             NLL+GD LSGCWAT+ V+TEKG PKTSSIGQ Y IWK+G L EN +S+FLFGDAY+KN  
Sbjct:   117 NLLMGDKLSGCWATMGVITEKGQPKTSSIGQAYGIWKIGSLNENNVSLFLFGDAYKKNET 176

Query:   181 EHAGTVFALFNCSVRKDAKGPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVIN 240
             E AGTVF LFNCS+RKD  G  FSLSV+SA Q++K+G S DYGVC  KRKDG  C +V+N
Sbjct:   177 EKAGTVFGLFNCSLRKDNGGREFSLSVNSAKQMVKLGVSADYGVCTAKRKDGTTCTSVVN 236

Query:   241 KRKGIYCGYHRLKASDRFITTRSELKGGNLRTAFRSPLNSEGIYLFDPLTDRTNLQKPKQ 300
             KR+G +C  H+L ASD+F T R+ELKGGNLRTAFR  L S+GIY  +P  DR+  +K  Q
Sbjct:   237 KRQGAFCKIHKLNASDKFATMRTELKGGNLRTAFRD-LKSQGIYTVEPPADRSGNKKTTQ 295

Query:   301 PVKVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPKTGNRESIKPGRQSTNLEKRKS 360
             PV+VLSVEGL+KALS A KVT N HSQGIRFLNEMA  K     + K    + + EKRK+
Sbjct:   296 PVRVLSVEGLRKALSGADKVTPNVHSQGIRFLNEMARQKASKNVNKKSEAVNKSTEKRKA 355

Query:   361 PTVKPDPSLVTNQQADDKRRKTDQGQALADKTQKGTGKMIELDMVSSDED 410
              T +      T    + KR+KT+  +   +  +  TGKM+ LD  SSDE+
Sbjct:   356 STKE------TQVNGEPKRKKTEHRK---ETPEISTGKMMLLDFCSSDEE 396

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=TAS

UNIPROTKB|Q5EAW4 mcm10 "Protein MCM10 homolog" [Xenopus laevis (taxid:8355)]

 Score = 307 (113.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 64/185 (34%), Positives = 107/185 (57%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSG-CWATVAVLTEKGHP 144
             VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  P
Sbjct:   238 VEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITP 297

Query:   145 KTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G  
Sbjct:   298 QSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 357

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  + 
Sbjct:   358 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 417

Query:   262 RSELK 266
             R++L+
Sbjct:   418 RADLQ 422

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|F1N1H5 MCM10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
 Identities = 65/202 (32%), Positives = 109/202 (53%)

Query:    81 SNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLT 139
             + +  VE FSGLR+R P V+ +E++++    + +RLS +K  +  + L    W T  V+ 
Sbjct:   232 AQEVSVEAFSGLRLRKPRVSSTEMNKKMIGRKLIRLSQLKEKMASEKLEEIDWVTFGVIL 291

Query:   140 EKGHPKTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKD 197
             +K  P++S+ G+ + IW+L  L + T  +S+FLFG+ +++ WK   G+V  L N +  K 
Sbjct:   292 KKITPQSSNSGKTFSIWRLNDLRDLTRCVSLFLFGEVHKELWKTEQGSVIGLLNANPMKP 351

Query:   198 AKGPG-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASD 256
               G     LS+    +I+ MG ++D G CK K+K+G  C  ++N     YC YH      
Sbjct:   352 KDGSEEMCLSIDHPQKILIMGEALDLGTCKAKKKNGEPCTQIVNLNDCEYCQYHIQAQYK 411

Query:   257 RFITTRSELK----GGNLRTAF 274
             R    R++L+    GG +   F
Sbjct:   412 RLSARRADLQSTFSGGRIPKKF 433

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

ZFIN|ZDB-GENE-041210-42 mcm10 "minichromosome maintenance complex component 10" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
 Identities = 62/186 (33%), Positives = 109/186 (58%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P ++  ++ ++ +  + +RLS + + L  D L    W T AV+  K  P
Sbjct:   218 VEKFSGLRLRKPRLSSIDIEQKMASRKLIRLSQLPDRLARDNLEDSDWVTFAVIINKITP 277

Query:   145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++ + G+ + IWKL  L   E  +S+FLFG  +   WK   GTV  + N +  K+ +G  
Sbjct:   278 QSKNNGKTFSIWKLNDLHNLEVNVSLFLFGSVHTDLWKTDTGTVIGILNPNPMKNKEGSN 337

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
               SL+V    +++ +G ++D+G CK K+K+G +C  ++N  +  +C YH +KA  + +++
Sbjct:   338 ELSLTVDHPQKVLIIGEAMDFGTCKAKKKNGDSCTQLVNLYECQFCQYH-VKAQYKKMSS 396

Query:   262 -RSELK 266
              R+EL+
Sbjct:   397 KRAELQ 402

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1PEN5 MCM10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
 Identities = 67/197 (34%), Positives = 104/197 (52%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P V+ +E++++    + +RLS +K  +  + L    W T  V+ +K  P
Sbjct:   247 VEAFSGLRLRRPRVSSTEMNKKMIGRKLIRLSQLKEKMASEKLEEIDWVTFGVILKKITP 306

Query:   145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++ + G+ + IW+L  L + T  +S+FLFG+ +++ WK   GTV  L N +  K   G  
Sbjct:   307 QSCNSGKTFSIWRLNDLRDLTRYVSLFLFGEVHKELWKTEQGTVIGLLNANPMKPKDGSD 366

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYH----RLKASDR 257
                LSV    +I+ MG ++D G CK K+K+G  C   +N     YC YH      K S R
Sbjct:   367 EVCLSVDHPQKILIMGEALDLGTCKAKKKNGQPCTQTVNLNDCEYCQYHIQAQYKKLSAR 426

Query:   258 FITTRSELKGGNLRTAF 274
                 +S   GG +   F
Sbjct:   427 RADLQSTFSGGRIPKKF 443

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1311330 Mcm10 "minichromosome maintenance complex component 10" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 68/198 (34%), Positives = 106/198 (53%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P V+ +E++ + +  + +RLS IK  +  + L    W T  V+  K  P
Sbjct:   267 VEAFSGLRLRRPRVSSTEMNRKMTGRKLIRLSQIKEKMATENLEETDWVTFGVILRKVTP 326

Query:   145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
             ++++ G+ + IWKL  L + T  +S+FLFGD ++  WK   GTV  L N +  K  +G  
Sbjct:   327 QSANSGKTFSIWKLNDLRDLTQCVSLFLFGDVHKDLWKTEQGTVIGLLNANPMKPKEGLT 386

Query:   202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LS+    +++ MG ++D G CK K+K+G  C   +N     YC YH      +    
Sbjct:   387 EVCLSIDHPQKVLIMGEAMDLGTCKAKKKNGEPCTQTVNLHDCEYCQYHIQAQYKKLSAK 446

Query:   262 RSELK----GGNLRTAFR 275
             RS+L+    GG +   FR
Sbjct:   447 RSDLQSTFSGGRIPKKFR 464

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q28E45 mcm10 "Protein MCM10 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 307 (113.1 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 62/185 (33%), Positives = 108/185 (58%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSG-CWATVAVLTEKGHP 144
             VE FSGLR+R P V+ SE+  + +  + +RL+ ++N ++ + L    W T  V+ +K  P
Sbjct:   225 VEKFSGLRLRKPRVSSSEMERKMNGRKLIRLAQLQNKIVTEKLEDEDWVTFGVIVKKITP 284

Query:   145 KTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++S+ G+ + IW+L  L+  +  +S+FLFGD ++++WK   GTV  L N +  K  +G  
Sbjct:   285 QSSNNGKTFSIWRLNDLKNLDKYVSLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTD 344

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  + 
Sbjct:   345 EVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSSK 404

Query:   262 RSELK 266
             R++L+
Sbjct:   405 RADLQ 409

GO:0005634 "nucleus" evidence=ISS

MGI|MGI:1917274 Mcm10 "minichromosome maintenance deficient 10 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 5.0e-26, P = 5.0e-26
 Identities = 68/198 (34%), Positives = 104/198 (52%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P V+ +E+S + +  + +RL  IK  +  + L    W T  V+  K  P
Sbjct:   263 VEAFSGLRLRRPRVSSTEMSRKMAGRKLIRLPQIKEKMATENLEETDWVTFGVILRKVTP 322

Query:   145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKG-P 201
             ++++ GQ + IWKL  L + T  +S+FLFGD ++  WK   GTV  L N +  K   G  
Sbjct:   323 QSATSGQTFSIWKLNDLHDLTQCVSLFLFGDVHKDLWKTEQGTVIGLLNANPMKPKDGLK 382

Query:   202 GFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LS+    +++ MG ++D G CK K+K+G  C   +N     YC YH      +    
Sbjct:   383 EVCLSIDHPQKVLIMGEAMDLGACKAKKKNGEPCTQTVNLHDCEYCQYHIQAQYKKLSAK 442

Query:   262 RSELK----GGNLRTAFR 275
             R++L+    GG +   FR
Sbjct:   443 RTDLQSTFSGGRIPKKFR 460

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NPY4 MCM10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 9.9e-26, P = 9.9e-26
 Identities = 62/185 (33%), Positives = 104/185 (56%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P V+ +E+  + +  + +RLS +K+ L  + L    W T  V+ +K  P
Sbjct:   232 VETFSGLRLRKPRVSSAEMDRKMANRKLIRLSQLKHKLATENLEETDWVTFGVIVKKVTP 291

Query:   145 KTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++++ G+ + IW+L  L +    +S+FLFGD +++ WK   GTV  L N +  K  +G  
Sbjct:   292 QSTNNGRTFSIWRLNDLRDLSQCVSLFLFGDVHKELWKTDQGTVIGLLNANPMKPKEGSD 351

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LSV    +I+ MG ++D G CK ++K+G  C  ++N     YC YH      +  + 
Sbjct:   352 EVCLSVDHPQKILLMGEALDMGTCKARKKNGDPCAQIVNLNDCEYCQYHIQSQYKKLSSK 411

Query:   262 RSELK 266
             R++L+
Sbjct:   412 RADLQ 416

GO:0006260 "DNA replication" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5T670 MCM10 "Protein MCM10 homolog" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 65/197 (32%), Positives = 106/197 (53%)

Query:    86 VENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGHP 144
             VE FSGLR+R P V+ +E++++ +  + +RLS IK  +  + L    W T  V+ +K  P
Sbjct:   246 VEAFSGLRLRRPRVSSTEMNKKMTGRKLIRLSQIKEKMAREKLEEIDWVTFGVILKKVTP 305

Query:   145 KTSSIGQNYCIWKLGCLEENT--ISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPG 202
             ++ + G+ + IWKL  L + T  +S+FLFG+ ++  WK   GTV  + N +  K   G  
Sbjct:   306 QSVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHKALWKTEQGTVVGILNANPMKPKDGSE 365

Query:   203 -FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITT 261
                LS+    +++ MG ++D G CK K+K+G  C   +N R   YC YH      +    
Sbjct:   366 EVCLSIDHPQKVLIMGEALDLGTCKAKKKNGEPCTQTVNLRDCEYCQYHVQAQYKKLSAK 425

Query:   262 RSELK----GGNLRTAF 274
             R++L+    GG +   F
Sbjct:   426 RADLQSTFSGGRIPKKF 442

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
pfam09329	46	pfam09329, zf-primase, Primase zinc finger	3e-12

>gnl|CDD|192253 pfam09329, zf-primase, Primase zinc finger

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 217 GTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTR 262
           G++ D G CK  +KDG  C + +NKRK  +C YH      +  + R
Sbjct: 1   GSARDLGTCKAVKKDGKRCTSWVNKRKTEFCEYHVEAQYRKSSSKR 46

This zinc finger is found in yeast Mcm10 proteins and DnaG-type primases. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
KOG3056	578	consensus Protein required for S-phase initiation	100.0
PF09329	46	zf-primase: Primase zinc finger; InterPro: IPR0154	99.7
cd04474	104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	97.39
cd04497	138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	96.63
cd04490	79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	95.71
TIGR00617	608	rpa1 replication factor-a protein 1 (rpa1). This f	95.67
cd03524	75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	95.2
PF01336	75	tRNA_anti-codon: OB-fold nucleic acid binding doma	95.16
PRK07211	485	replication factor A; Reviewed	95.03
cd04485	84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	94.68
PRK12366	637	replication factor A; Reviewed	94.62
cd04491	82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	94.16
PRK15491	374	replication factor A; Provisional	93.78
PRK12366	637	replication factor A; Reviewed	93.47
PRK08402	355	replication factor A; Reviewed	93.42
cd04492	83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	93.26
cd04475	101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	92.91
cd04489	78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	92.61
PRK06461	129	single-stranded DNA-binding protein; Reviewed	92.02
KOG3416	134	consensus Predicted nucleic acid binding protein [	91.49
PF02765	146	POT1: Telomeric single stranded DNA binding POT1/C	91.23
PRK07373	449	DNA polymerase III subunit alpha; Reviewed	91.02
cd04481	106	RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of unc	89.96
PRK15491	374	replication factor A; Provisional	89.92
PRK05673	1135	dnaE DNA polymerase III subunit alpha; Validated	89.75
TIGR00617	608	rpa1 replication factor-a protein 1 (rpa1). This f	89.73
PRK14699	484	replication factor A; Provisional	89.39
PRK02801	101	primosomal replication protein N; Provisional	86.19
PRK07211	485	replication factor A; Reviewed	83.53
PRK07374	1170	dnaE DNA polymerase III subunit alpha; Validated	83.48
cd04496	100	SSB_OBF SSB_OBF: A subfamily of OB folds similar t	83.13
PRK06920	1107	dnaE DNA polymerase III DnaE; Reviewed	82.79
PRK06826	1151	dnaE DNA polymerase III DnaE; Reviewed	82.16

>KOG3056 consensus Protein required for S-phase initiation or completion [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.3e-57  Score=465.68  Aligned_cols=318  Identities=30%  Similarity=0.409  Sum_probs=247.0

Q ss_pred             CCCcccccccccccccccccCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCchhHhHhhhhhccCCCCCcCC
Q 015213            1 MSNHQEDLSLLLSLQDKFLETPPGSPSNPGS----------SSPGYLSDDGSPRQRGQVDMSAFRNIVQDCLDYEPKPVD   70 (411)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~~~~~d~s~fr~~v~d~l~~~p~~~~   70 (411)
                      |...++|.++|+.+.|++++|+++++.+...          .+.+|.+++.++......+.+-+|.+++|  +..|.   
T Consensus        63 ~~~~~~~~~~~~l~~~~~~~t~~~s~~~~p~~~~~k~~~~~~~~a~~~~~ks~~k~~~~~~~r~~~v~~d--ee~~~---  137 (578)
T KOG3056|consen   63 NRTQQGDKFELELIVDKRLETKQGSLQKKPPGPTPSYFMEKFTNAKKTEDKSIKKNESSMNTRVRTVGTD--EEKPI---  137 (578)
T ss_pred             ccccccchhhhhhhhhhhhccccccccCCCCCCCcchhhhhhcccccCcchhhhhcCccCCCCceeeccc--cccce---
Confidence            4567899999999999999999999855331          22355667777777777777777777777  22122   


Q ss_pred             CCCCcccCCCCCCCcccCCcCceeccCccCHHHHHhHhcCCceeehhh-HHhhhcCCCCCCCeEEEEEEecCCCccccCC
Q 015213           71 KIKKPKLSKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLST-IKNLLLGDTLSGCWATVAVLTEKGHPKTSSI  149 (411)
Q Consensus        71 ~~pk~k~~~~~~~~~~Ep~SGLrL~~R~IS~~~L~e~l~~~k~vrls~-Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~  149 (411)
                                  ....++.++++++++.+|++++..+|.+++-|+|+. ++++++++++.+||||||||++|+++|.+++
T Consensus       138 ------------~i~~~~~f~~~~~~pr~ss~~~~k~~~g~k~i~ls~~~~~l~r~~kf~~~Wvt~GvI~~K~~~K~t~~  205 (578)
T KOG3056|consen  138 ------------IIDELDKFSNLWIKPRYSSTSDLKRMTGRKLIRLSGKLFNLIRGPKFEENWVTMGVIVEKSDPKFTSN  205 (578)
T ss_pred             ------------eeeeccchhhhhhccccCchhhHHHhhcCcceeehhhhhhcccCcccccCeEEEEEEeecCCcccccC
Confidence                        124456677888888888999999999999999984 6789999999999999999999999999999


Q ss_pred             CccEEEEEEeeCCC-CeEEEEEechHHHhhcCcccccEEEEECceeccCCCCC--cceEEecCCccEEEeeeeccCccce
Q 015213          150 GQNYCIWKLGCLEE-NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGP--GFSLSVSSASQIIKMGTSVDYGVCK  226 (411)
Q Consensus       150 Gk~Y~iwkLsDL~~-~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~--~fsLsV~s~d~ILeIG~S~DlG~CK  226 (411)
                      |++|+||+|+||++ .+|+|||||+||++|||++.|+|||||||+|++++.|.  .|+|+|+++++||+||.|+|||+|+
T Consensus       206 G~~y~iwkL~dLk~~q~vslfLFG~a~k~~wk~k~GtVialLNp~v~k~~~gs~~~f~LsIds~~~ileiG~S~dlGtC~  285 (578)
T KOG3056|consen  206 GNPYSIWKLTDLKDHQTVSLFLFGKAHKRYWKIKLGTVIALLNPEVLKDRPGSRKSFSLSIDSSKKILEIGQSADLGTCK  285 (578)
T ss_pred             CCceEEEEeeecCccceeEEEEecHHHHHHhhhccCcEEEEeCccccCCCCCCcceEEEEecCccceEEeeccccccccc
Confidence            99999999999997 49999999999999999999999999999999988765  8999999999999999999999999


Q ss_pred             eeecCCcccccccccccccccccchHHHhhhhccCCceecCCCcc----cccCCCCCCCCeeeeCCccccccCCCCCCcc
Q 015213          227 GKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLR----TAFRSPLNSEGIYLFDPLTDRTNLQKPKQPV  302 (411)
Q Consensus       227 a~kKdG~~Ct~~VNk~~~eyC~yHv~~a~rK~~s~R~EL~ggn~~----~~~~~p~~~~G~y~~~p~a~~~n~k~~~~~~  302 (411)
                      +++|||++|++|||++.|+||+||++.++++.+++|.||+++...    ...+..|+..+.||-.-.-..-|--   ...
T Consensus       286 a~rK~G~~Cts~VN~~l~~~C~yHv~~~~~k~sakR~el~s~~ag~~v~~l~~e~l~k~~~~yg~~s~~~~~a~---~~a  362 (578)
T KOG3056|consen  286 AKRKDGEKCTSVVNKSLCDYCDYHVEQAYRKLSAKRIELNSGTAGGAVPKLSSEGLRKGLSLYGGKSFNGFNAI---KGA  362 (578)
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHHhhcccchhhhccccccCCCcccchhhccCCccccccccccccccc---ccc
Confidence            999999999999999999999999999999999999999976321    1111223333333221111000000   000


Q ss_pred             eEEeechhhhhhccCCccccccccccchhhhhhcCCC
Q 015213          303 KVLSVEGLKKALSNAGKVTTNTHSQGIRFLNEMAGPK  339 (411)
Q Consensus       303 ~~lsv~g~~~~l~~~~~~~~~~~s~g~~f~~~vag~~  339 (411)
                      .+-.-+-.+..+. +..+++.+++++-+|-.....++
T Consensus       363 ~~~~s~~~~~~~~-~~~~~~~s~s~~~~~~~k~e~pt  398 (578)
T KOG3056|consen  363 RKSLSEAERDTMK-SSHNFTKSNSAKAFFKEKFEEPT  398 (578)
T ss_pred             cccccHHHHHHHh-hccCcccccchhhhhhhhhhcch
Confidence            0000011111111 45678888999988888877766

>PF09329 zf-primase: Primase zinc finger; InterPro: IPR015408 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.70  E-value=3.4e-18  Score=126.54  Aligned_cols=46  Identities=43%  Similarity=0.785  Sum_probs=37.0

Q ss_pred             eeeccCccceeeecCCcccccccccccccccccchHHHhhhhccCC
Q 015213          217 GTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFITTR  262 (411)
Q Consensus       217 G~S~DlG~CKa~kKdG~~Ct~~VNk~~~eyC~yHv~~a~rK~~s~R  262 (411)
                      |.|+|||+|+++++||++|++|||+++++||+||++.+++|.+++|
T Consensus         1 G~s~DlG~Ck~~kkdG~~C~~~Vn~~~~~~C~yH~~~~~~k~~s~R   46 (46)
T PF09329_consen    1 GSSRDLGYCKAVKKDGKPCTNPVNKSKGEYCDYHVESAYRKSRSKR   46 (46)
T ss_dssp             EEETTEEE-SSB-TTSSB---EEETTT-SS-TTTHHHHHCHHHHH-
T ss_pred             CCCCcCccccCCCCCCCcccCceeCCCCcccHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999998877

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger domain is found in Mcm10 proteins and DnaG-type primases []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 3H15_A 3EBE_C.

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)

Probab=97.39  E-value=0.0022  Score=54.41  Aligned_cols=83  Identities=20%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             CCCCeEEEEEEecCCCccccCCC---ccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213          128 LSGCWATVAVLTEKGHPKTSSIG---QNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK----  199 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~ss~G---k~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~----  199 (411)
                      ...+|.+.|-|+.|++++.-.++   ..+.-+.|.|=.+.++.+-+|+++.++|+ .+++|.|+.|-|..|.+.+.    
T Consensus         8 ~~~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~   87 (104)
T cd04474           8 YQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFNT   87 (104)
T ss_pred             CCCcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCCC
Confidence            45689999999999999986553   45667889999778999999999999988 58999999999999987532    


Q ss_pred             -CCcceEEecCC
Q 015213          200 -GPGFSLSVSSA  210 (411)
Q Consensus       200 -g~~fsLsV~s~  210 (411)
                       ++.+.+.++..
T Consensus        88 ~~~~yeI~f~~~   99 (104)
T cd04474          88 LKNDYEITFNRD   99 (104)
T ss_pred             CCCcEEEEECCC
Confidence             24566666543

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)

Probab=96.63  E-value=0.036  Score=49.36  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             ceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCC---CeEEEEEechHHHhhcCcccccEEE
Q 015213          112 RFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEE---NTISVFLFGDAYQKNWKEHAGTVFA  188 (411)
Q Consensus       112 k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~---~~VsLfLFG~A~ek~wKl~~GtVIA  188 (411)
                      .|+.|.+|..     ...+---++|||++.++|+.+....-.+.++|.|-..   ..|.+-||+.-.+.+=.+.+|+||+
T Consensus         2 ~f~~i~~~~~-----~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDVIl   76 (138)
T cd04497           2 KYTPLSSALK-----ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIIL   76 (138)
T ss_pred             ceEeHHHHHh-----ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCEEE
Confidence            4677776665     2345566999999999998876544567889999864   6799999999877777789999999


Q ss_pred             EECceeccCC
Q 015213          189 LFNCSVRKDA  198 (411)
Q Consensus       189 ILNP~Im~~~  198 (411)
                      |=|-.|...+
T Consensus        77 l~~~kv~~~~   86 (138)
T cd04497          77 LRRVKIQSYN   86 (138)
T ss_pred             EEEEEEEEEC
Confidence            9998886543

POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit

Probab=95.71  E-value=0.035  Score=45.24  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             eEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHH--hhc-CcccccEEEEE
Q 015213          132 WATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQ--KNW-KEHAGTVFALF  190 (411)
Q Consensus       132 WVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~e--k~w-Kl~~GtVIAIL  190 (411)
                      ..++|+|.+..   .|++|++  +.+|.|+. ..+.+.+|.+.|+  +|- .+.+|.+|.|-
T Consensus         2 v~i~GiI~~v~---~TK~g~~--~~~leD~~-G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~   57 (79)
T cd04490           2 VSIIGMVNDVR---STKNGHR--IVELEDTT-GRITVLLTKDKEELFEEAEDILPDEVIGVS   57 (79)
T ss_pred             EEEEEEEeEEE---EcCCCCE--EEEEECCC-CEEEEEEeCchhhhhhhhhhccCCCEEEEE
Confidence            46789999886   7788888  99999997 6799999999999  765 46777777654

PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)

Probab=95.67  E-value=0.073  Score=58.31  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=64.7

Q ss_pred             CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccC--C--CccEEEEEEeeCCCCeEEEEEechHHHhhc-Cccccc
Q 015213          111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSS--I--GQNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGT  185 (411)
Q Consensus       111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss--~--Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~Gt  185 (411)
                      +++++|+.|.      +..++|.+-|-|+.|++.|.-.  +  |+ ..-+.|.| .+.+|..-+|+++.++|+ .+++|.
T Consensus       178 ~~~~pI~~L~------py~~~wtIkaRV~~Ks~ir~~~~~~gegk-vfsv~L~D-egg~Irat~f~~~~dkf~~~l~eG~  249 (608)
T TIGR00617       178 RRVMPIASLS------PYQNKWTIKARVTNKSEIRTWSNARGEGK-LFNVELLD-ESGEIRATAFNEQADKFYDIIQEGK  249 (608)
T ss_pred             cceEEHHHCC------CCCCceEEEEEEEeccccceecCCCCCce-eeEEEEec-CCCeEEEEECchHHHHHhhhcccCC
Confidence            4677777654      3567899999999999998732  2  44 45567899 788999999999999988 589999


Q ss_pred             EEEEECceeccCC
Q 015213          186 VFALFNCSVRKDA  198 (411)
Q Consensus       186 VIAILNP~Im~~~  198 (411)
                      |+.|-|..|.+.+
T Consensus       250 VY~Is~~~Vk~an  262 (608)
T TIGR00617       250 VYYISKGSLKPAN  262 (608)
T ss_pred             EEEECceEEEEcc
Confidence            9999999997643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)

Probab=95.20  E-value=0.1  Score=38.35  Aligned_cols=60  Identities=23%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             EEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccC
Q 015213          134 TVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKD  197 (411)
Q Consensus       134 tvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~  197 (411)
                      ++|+|++.....+   |+.|..++|.|..+..+.+.+|.+.++.+. .+.+|.+|.|- ..+...
T Consensus         2 v~g~v~~~~~~~~---~~~~~~~~l~D~~~~~i~~~~~~~~~~~~~~~~~~g~~v~v~-g~v~~~   62 (75)
T cd03524           2 IVGIVVAVEEIRT---EGKVLIFTLTDGTGGTIRVTLFGELAEELENLLKEGQVVYIK-GKVKKF   62 (75)
T ss_pred             eEEEEEeeccccc---CCeEEEEEEEcCCCCEEEEEEEchHHHHHHhhccCCCEEEEE-EEEEec
Confidence            6788988876544   888999999998657899999999888864 67999998887 777543

RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands

Probab=95.16  E-value=0.089  Score=40.20  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             eEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEech-HHHhhcCcccccEEEEECceeccCCCCCcceEEecC
Q 015213          132 WATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGD-AYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSS  209 (411)
Q Consensus       132 WVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~-A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV~s  209 (411)
                      +.+.|.|.+..     .++++|..++|.|-. ..+.+.+|++ ....+..+.+|++|.|. ..+...+.+ .+.|.+.+
T Consensus         1 V~v~G~V~~~~-----~~~~~~~~~~l~D~t-g~i~~~~~~~~~~~~~~~l~~g~~v~v~-G~v~~~~~~-~~~l~~~~   71 (75)
T PF01336_consen    1 VTVEGRVTSIR-----RSGGKIVFFTLEDGT-GSIQVVFFNEEYERFREKLKEGDIVRVR-GKVKRYNGG-ELELIVPK   71 (75)
T ss_dssp             EEEEEEEEEEE-----EEETTEEEEEEEETT-EEEEEEEETHHHHHHHHTS-TTSEEEEE-EEEEEETTS-SEEEEEEE
T ss_pred             CEEEEEEEEEE-----cCCCCEEEEEEEECC-ccEEEEEccHHhhHHhhcCCCCeEEEEE-EEEEEECCc-cEEEEECE
Confidence            45789998886     678889999999996 7999999994 45566789999999999 777665432 36666654

The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....

>PRK07211 replication factor A; Reviewed

Probab=95.03  E-value=0.15  Score=54.68  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             CCCCeEEEEEEecCCCccc--cCCCccEEE--EEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcc
Q 015213          128 LSGCWATVAVLTEKGHPKT--SSIGQNYCI--WKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGF  203 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~--ss~Gk~Y~i--wkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~f  203 (411)
                      ....|.++|+|.+++++|.  .++|+.-.+  ..|.|=. ..|++-||++..+.+-.+.+|+||.|.|..+...+  +..
T Consensus       170 ~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeT-G~IR~TlW~d~Ad~~~~le~G~Vv~I~~a~Vre~~--g~~  246 (485)
T PRK07211        170 GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDET-GRVRVTLWDDRADLAEELDAGESVEIVDGYVRERD--GSL  246 (485)
T ss_pred             CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCC-CeEEEEEechhhhhhccCCCCCEEEEEeeEEEecC--CcE
Confidence            3578999999999999886  345644444  4555543 47999999998888877999999999999997653  356


Q ss_pred             eEEecCCccEEEe
Q 015213          204 SLSVSSASQIIKM  216 (411)
Q Consensus       204 sLsV~s~d~ILeI  216 (411)
                      .|++.+...|.++
T Consensus       247 ELsl~~~s~I~~~  259 (485)
T PRK07211        247 ELHVGDRGAVEEV  259 (485)
T ss_pred             EEEECCCceEEEC
Confidence            7777665555554

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)

Probab=94.68  E-value=0.1  Score=40.14  Aligned_cols=71  Identities=17%  Similarity=0.266  Sum_probs=51.3

Q ss_pred             EEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCCCCcceEEecC
Q 015213          134 TVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFSLSVSS  209 (411)
Q Consensus       134 tvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fsLsV~s  209 (411)
                      ++|+|.+.. .+.+++|+.|...+|.|-. ..+.+.+|.+.|+++- .+.+|.++.|. -.+....  +...|.+.+
T Consensus         2 i~g~v~~~~-~~~~k~g~~~~~~~l~D~t-g~~~~~~f~~~~~~~~~~l~~g~~v~v~-G~v~~~~--~~~~l~~~~   73 (84)
T cd04485           2 VAGLVTSVR-RRRTKKGKRMAFVTLEDLT-GSIEVVVFPETYEKYRDLLKEDALLLVE-GKVERRD--GGLRLIAER   73 (84)
T ss_pred             EEEEEEEeE-EEEcCCCCEEEEEEEEeCC-CeEEEEECHHHHHHHHHHhcCCCEEEEE-EEEEecC--CceEEEeec
Confidence            578887753 4677889999999999986 5799999998886553 57889888664 3443332  346666654

The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.

>PRK12366 replication factor A; Reviewed

Probab=94.62  E-value=0.16  Score=55.93  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CeEEEEEEecCCCccccC----CCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCC--CC-Ccc
Q 015213          131 CWATVAVLTEKGHPKTSS----IGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDA--KG-PGF  203 (411)
Q Consensus       131 dWVtvGVIv~Ks~pK~ss----~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~--~g-~~f  203 (411)
                      .|.+.|-|+.|+++|.=.    .|+-|. ..|.|=. .+|++-+|+++.++++.+.+|+|+.|-|..+..++  .+ ..+
T Consensus       293 ~~~I~grV~~~~~~R~f~~~~g~gkv~s-~~l~D~t-G~IR~t~w~~~~d~~~~l~~G~vy~is~~~vk~y~~~~~~~~~  370 (637)
T PRK12366        293 EVDVKGRIIAISDKREVERDDRTAEVQD-IELADGT-GRVRVSFWGEKAKILENLKEGDAVKIENCKVRTYYDNEGEKRV  370 (637)
T ss_pred             EEEEEEEEEecCCceEEEcCCCcEEEEE-EEEEcCC-CeEEEEEeCchhhhhcccCCCCEEEEecCEEeeccccCCCcCE
Confidence            799999999999988832    244343 4777743 58999999999999999999999999999998543  22 245


Q ss_pred             eEEecCCccE
Q 015213          204 SLSVSSASQI  213 (411)
Q Consensus       204 sLsV~s~d~I  213 (411)
                      .|++++...|
T Consensus       371 El~~~~~s~I  380 (637)
T PRK12366        371 DLNAGYSSEI  380 (637)
T ss_pred             EEEcCCceEE
Confidence            5555443333

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)

Probab=94.16  E-value=0.56  Score=37.57  Aligned_cols=75  Identities=20%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             EEEEEecCCCccccC---CCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEecCC
Q 015213          134 TVAVLTEKGHPKTSS---IGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSA  210 (411)
Q Consensus       134 tvGVIv~Ks~pK~ss---~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV~s~  210 (411)
                      +.|+|.+.++++.-.   ....|..+.|.|=. ..+.+-+|++..  .-.+.+|+||.|-|..+...+  ....|++...
T Consensus         2 v~~~V~~~~~~~~~~~~g~~~~~~~~~l~D~T-G~i~~~~W~~~~--~~~~~~G~vv~i~~~~v~~~~--g~~ql~i~~~   76 (82)
T cd04491           2 VEGKVLSISEPREFTRDGSEGKVQSGLVGDET-GTIRFTLWDEKA--ADDLEPGDVVRIENAYVREFN--GRLELSVGKN   76 (82)
T ss_pred             EEEEEEEccCCeEeccCCCeeEEEEEEEECCC-CEEEEEEECchh--cccCCCCCEEEEEeEEEEecC--CcEEEEeCCc
Confidence            689999999988743   44568888888854 489999999865  567899999999999997654  3477777765


Q ss_pred             ccE
Q 015213          211 SQI  213 (411)
Q Consensus       211 d~I  213 (411)
                      ..|
T Consensus        77 ~~i   79 (82)
T cd04491          77 SEI   79 (82)
T ss_pred             eEE
Confidence            444

SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating

>PRK15491 replication factor A; Provisional

Probab=93.78  E-value=0.46  Score=49.34  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCCeEEEEEEecCCCcccc--CCCccEEE--EEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcce
Q 015213          129 SGCWATVAVLTEKGHPKTS--SIGQNYCI--WKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFS  204 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~s--s~Gk~Y~i--wkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fs  204 (411)
                      ..+|-+.|+|+.++++|.=  +.|+...+  ..|.|=. ..|++-||++..+.+..+.+|++|-|.|..++-..-.+...
T Consensus       176 ~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~Det-G~Ir~t~W~~~a~~~~~l~~Gd~V~i~~~~~r~~~~~g~~E  254 (374)
T PRK15491        176 DSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDET-GKIRVTLWDGKTDLADKLENGDSVEIINGYARTNNYSQEVE  254 (374)
T ss_pred             CccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCC-CeEEEEEecchhcccccCCCCCEEEEEeceEEEeccCCCEE
Confidence            4579999999999988773  46764333  5556643 47999999998888888999999999999886433234678


Q ss_pred             EEecCCccEEEe
Q 015213          205 LSVSSASQIIKM  216 (411)
Q Consensus       205 LsV~s~d~ILeI  216 (411)
                      |++.+...|.+.
T Consensus       255 l~~~~~s~I~~~  266 (374)
T PRK15491        255 IQIGNHGSLRKT  266 (374)
T ss_pred             EEeCCCceEEEC
Confidence            888776666654

>PRK12366 replication factor A; Reviewed

Probab=93.47  E-value=0.67  Score=51.20  Aligned_cols=68  Identities=19%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             CCCeEEEEEEecCCCcccc--CCC--ccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccC
Q 015213          129 SGCWATVAVLTEKGHPKTS--SIG--QNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKD  197 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~s--s~G--k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~  197 (411)
                      ..+|.+.|-|++++++|.-  .+|  .++....|.|=. .++++-+|+++.+.|-.+.+|+|+-|-|..+...
T Consensus        73 ~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~Det-G~Ir~t~W~~~~~~~~~le~G~v~~i~~~~v~~~  144 (637)
T PRK12366         73 QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNT-GTIRLTLWNDNAKLLKGLKEGDVIKIENARSRKW  144 (637)
T ss_pred             CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCC-CEEEEEEEchhhhhhccCCCCCEEEEeccEeccc
Confidence            4689999999999999963  445  357778888854 5899999999877666899999999999988654

>PRK08402 replication factor A; Reviewed

Probab=93.42  E-value=0.6  Score=48.30  Aligned_cols=78  Identities=18%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             CCeEEEEEEecCCCccc--cCCCcc--EEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCCCCcce
Q 015213          130 GCWATVAVLTEKGHPKT--SSIGQN--YCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFS  204 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~--ss~Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fs  204 (411)
                      .+|-+.|-|++++++|.  ..+|..  ..-..|.|= ...+.+-||++....++ .+.+|+||+|.|..+.....| .++
T Consensus        73 ~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~De-TG~ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~V~e~~~G-~~e  150 (355)
T PRK08402         73 RGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDD-TGRARVVLWDAKVAKYYNKINVGDVIKVIDAQVRESLSG-LPE  150 (355)
T ss_pred             ceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcC-CCeEEEEEechhhhhhcccCCCCCEEEEECCEEeecCCC-cEE
Confidence            46788999999998885  345654  444577774 35889999999877766 499999999999999764333 234


Q ss_pred             EEecC
Q 015213          205 LSVSS  209 (411)
Q Consensus       205 LsV~s  209 (411)
                      |+|..
T Consensus       151 Lsvg~  155 (355)
T PRK08402        151 LHINF  155 (355)
T ss_pred             EEECC
Confidence            55443

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)

Probab=93.26  E-value=0.23  Score=38.68  Aligned_cols=58  Identities=17%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             EEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceecc
Q 015213          136 AVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRK  196 (411)
Q Consensus       136 GVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~  196 (411)
                      .+|.+.. .+.+++|++|..+.|.|.. ..+.+.+|++.+...-.+.+|.+|.|- -.+..
T Consensus         4 ~~v~~~~-~~~tk~g~~~~~~~l~D~t-g~i~~~~f~~~~~~~~~l~~g~~v~v~-G~v~~   61 (83)
T cd04492           4 FLIKSKE-LRTAKNGKPYLALTLQDKT-GEIEAKLWDASEEDEEKFKPGDIVHVK-GRVEE   61 (83)
T ss_pred             EEEEEee-eecccCCCcEEEEEEEcCC-CeEEEEEcCCChhhHhhCCCCCEEEEE-EEEEE
Confidence            3566664 5778899999999999996 579999999776444468899888766 55533

Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=92.91  E-value=1.1  Score=37.16  Aligned_cols=64  Identities=16%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             EEEEEecCCCcccc--CC-Ccc--EEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCC
Q 015213          134 TVAVLTEKGHPKTS--SI-GQN--YCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDA  198 (411)
Q Consensus       134 tvGVIv~Ks~pK~s--s~-Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~  198 (411)
                      ++|+|.+.++++.-  ++ |+.  -.-+.|.|-.+..+.|-|+|+-.+.+.... |+||+|-|+.|...+
T Consensus         4 vig~V~~v~~~~~i~~k~~g~~~~~r~v~i~D~t~~~i~vtLWg~~a~~~~~~~-~~vv~~~~~~i~~~~   72 (101)
T cd04475           4 VIGVVKSVGPVTTITTKSTGRELDKREITLVDESGHSVELTLWGEQAELFDGSE-NPVIAIKGVKVSEFN   72 (101)
T ss_pred             EEEEEeEccCcEEEEEecCCCceeEEEEEEEeCCCCEEEEEEEHHHhhhcccCC-CCEEEEEeeEEEecC
Confidence            68999999988763  33 654  445566777667999999999655544333 999999999996654

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit

Probab=92.61  E-value=0.57  Score=36.60  Aligned_cols=52  Identities=10%  Similarity=0.038  Sum_probs=40.5

Q ss_pred             EEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEE
Q 015213          133 ATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALF  190 (411)
Q Consensus       133 VtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAIL  190 (411)
                      .+.|+|++-.   .+++|  +.+++|.|.. ..+.+.+|.+.++++- .+.+|++|.|.
T Consensus         3 ~v~g~v~~i~---~tk~g--~~~~~L~D~~-~~i~~~~f~~~~~~~~~~l~~g~~v~v~   55 (78)
T cd04489           3 WVEGEISNLK---RPSSG--HLYFTLKDED-ASIRCVMWRSNARRLGFPLEEGMEVLVR   55 (78)
T ss_pred             EEEEEEecCE---ECCCc--EEEEEEEeCC-eEEEEEEEcchhhhCCCCCCCCCEEEEE
Confidence            3667777543   36666  9999999986 7899999999988865 67899876554

E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.

>PRK06461 single-stranded DNA-binding protein; Reviewed

Probab=92.02  E-value=1.1  Score=39.57  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=61.9

Q ss_pred             CCeEEEEEEecCCCccc--cCCC-ccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEE
Q 015213          130 GCWATVAVLTEKGHPKT--SSIG-QNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLS  206 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~--ss~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLs  206 (411)
                      .+.-++|+|.++++++.  +++| ..|..+.|.|=. ..|.+-||++..+   .+.+|+||.|-|..+...+  ....|+
T Consensus        15 ~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~T-G~I~~tlW~~~a~---~l~~GdvV~I~na~v~~f~--G~lqL~   88 (129)
T PRK06461         15 ERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDET-GRVKLTLWGEQAG---SLKEGEVVEIENAWTTLYR--GKVQLN   88 (129)
T ss_pred             CceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCC-CEEEEEEeCCccc---cCCCCCEEEEECcEEeeeC--CEEEEE
Confidence            35667899998877554  4444 348888888875 4799999997443   5789999999999986543  347888


Q ss_pred             ecCCccEEEeee
Q 015213          207 VSSASQIIKMGT  218 (411)
Q Consensus       207 V~s~d~ILeIG~  218 (411)
                      |.....|..++.
T Consensus        89 i~~~~~i~~~~~  100 (129)
T PRK06461         89 VGKYGSISESDD  100 (129)
T ss_pred             ECCCEEEEECCc
Confidence            887777777764

>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]

Probab=91.49  E-value=1.3  Score=39.98  Aligned_cols=83  Identities=13%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             CCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEec
Q 015213          129 SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVS  208 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV~  208 (411)
                      -.|..++-+|.+-.....+++|+.|.+|++.|=. .+|.+-++++   ...-+++||||-|-+-----.+  ++..|.+.
T Consensus        14 ~kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~T-gsI~isvW~e---~~~~~~PGDIirLt~Gy~Si~q--g~LtL~~G   87 (134)
T KOG3416|consen   14 LKNINVTFIVLEYGRATKTKDGHEVRSCKVADET-GSINISVWDE---EGCLIQPGDIIRLTGGYASIFQ--GCLTLYVG   87 (134)
T ss_pred             hhcceEEEEEEeeceeeeccCCCEEEEEEEeccc-ceEEEEEecC---cCcccCCccEEEecccchhhhc--CceEEEec
Confidence            3466777788888888889999999999999985 6899999883   3445799999988774321111  24666666


Q ss_pred             CCccEEEee
Q 015213          209 SASQIIKMG  217 (411)
Q Consensus       209 s~d~ILeIG  217 (411)
                      ....+-+||
T Consensus        88 K~Ge~~KiG   96 (134)
T KOG3416|consen   88 KGGEVQKIG   96 (134)
T ss_pred             CCceEeEee
Confidence            666666665

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []

Probab=91.23  E-value=0.53  Score=42.18  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=57.7

Q ss_pred             CCCCeEEEEEEecCCCc--cccCCCccEEEEEEeeCCC-------CeEEEEEechHHHhhcCccc-ccEEEEECceeccC
Q 015213          128 LSGCWATVAVLTEKGHP--KTSSIGQNYCIWKLGCLEE-------NTISVFLFGDAYQKNWKEHA-GTVFALFNCSVRKD  197 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~p--K~ss~Gk~Y~iwkLsDL~~-------~~VsLfLFG~A~ek~wKl~~-GtVIAILNP~Im~~  197 (411)
                      ...---++|||+.-+.|  +.+..+.-.+.++|.|-.-       ..|.|.+|..-.+.+=.+.. |+||.|-+-+|...
T Consensus        11 ~~~~vnvigVV~~~~~p~~~~t~g~D~~~tl~i~D~S~~~~~~~~~~l~v~iF~~~~~~LP~v~~~GDii~l~r~kv~~~   90 (146)
T PF02765_consen   11 FGKFVNVIGVVVDFSPPNPKKTRGTDYMCTLTITDPSLNDSNQKLSGLTVNIFRPHKESLPNVKSVGDIIRLRRVKVQSY   90 (146)
T ss_dssp             SSEEEEEEEEEEEEEEECTEEESSSCEEEEEEEEBTTCSCSSCCCCEEEEEEEESSHHHSCTTCSTTHEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEccCCcceEcCCCcEEEEEEEECCCCCccccccCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE
Confidence            34466799999999999  7776666678889999862       47999999887888888877 99999998888655


Q ss_pred             C
Q 015213          198 A  198 (411)
Q Consensus       198 ~  198 (411)
                      +
T Consensus        91 ~   91 (146)
T PF02765_consen   91 N   91 (146)
T ss_dssp             T
T ss_pred             C
Confidence            4

It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [, , ]. ; GO: 0003677 DNA binding, 0000723 telomere maintenance, 0000784 nuclear chromosome, telomeric region; PDB: 1S40_A 1KXL_A 1PH7_A 1PH9_A 1PH2_A 1OTC_A 1PHJ_A 1JB7_A 1PA6_A 1PH1_A ....

>PRK07373 DNA polymerase III subunit alpha; Reviewed

Probab=91.02  E-value=0.81  Score=48.70  Aligned_cols=109  Identities=13%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             CcCceeccCccCHHHHHhHhcCCceeehhhHHhhhcCCCCCCCeE-EEEEEecCCCccccCCCccEEEEEEeeCCCCeEE
Q 015213           89 FSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWA-TVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTIS  167 (411)
Q Consensus        89 ~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~~~~~~~dWV-tvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~Vs  167 (411)
                      +-|+.|+.--+  +...+.+.......+.+|..     ...+.+| ++|+|... -.+.|++|+.+.+.+|.|+. ..+.
T Consensus       246 ~LGfylS~HPl--~~~~~~l~~~~~~~~~~l~~-----~~~~~~v~vaG~I~~i-k~~~TKkG~~maf~~leD~t-G~ie  316 (449)
T PRK07373        246 LLGFYVSEHPL--KSIRRPARLLSPINLSELEE-----QKEKTKVSAVVMLNEV-KKIVTKKGDPMAFLQLEDLS-GQSE  316 (449)
T ss_pred             HhccccCcCch--HHHHHHHHHcCCcCHHHHhc-----ccCCCEEEEEEEEEEe-EecccCCCCEEEEEEEEECC-CCEE
Confidence            34666654432  34445554444455555521     1234444 56666665 46778899999999999997 6799


Q ss_pred             EEEechHHHhhcC-cccccEEEEECceeccCCCCCcceEEecC
Q 015213          168 VFLFGDAYQKNWK-EHAGTVFALFNCSVRKDAKGPGFSLSVSS  209 (411)
Q Consensus       168 LfLFG~A~ek~wK-l~~GtVIAILNP~Im~~~~g~~fsLsV~s  209 (411)
                      +.+|.+.|+++-. +.+|.+|.|- -.+-..  .....|.++.
T Consensus       317 ~vvFp~~y~~~~~~l~~~~~v~v~-G~v~~~--~~~~~liv~~  356 (449)
T PRK07373        317 AVVFPKSYERISELLQVDARLIIW-GKVDRR--DDQVQLIVED  356 (449)
T ss_pred             EEECHHHHHHHHHHhccCCEEEEE-EEEEec--CCeEEEEEeE
Confidence            9999999999874 6777777663 344222  1234555544

>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)

Probab=89.96  E-value=2.5  Score=35.66  Aligned_cols=65  Identities=11%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             EEEEEecCCCccccC---CCccEEEEEEeeCCCCeEEEEEech---HHHhhcC--cccccEEEEEC-ceeccCC
Q 015213          134 TVAVLTEKGHPKTSS---IGQNYCIWKLGCLEENTISVFLFGD---AYQKNWK--EHAGTVFALFN-CSVRKDA  198 (411)
Q Consensus       134 tvGVIv~Ks~pK~ss---~Gk~Y~iwkLsDL~~~~VsLfLFG~---A~ek~wK--l~~GtVIAILN-P~Im~~~  198 (411)
                      ++|+|++-++.....   .-..+..+.|-|..+..+.+-|+|+   .|..+|.  -..+-||||+. -.|...+
T Consensus         2 viG~i~~v~~~~~~~~~~~~~~kr~~~i~D~~~~~l~~tlwG~~A~~f~~~~~~~~~~~~VVav~~~~rV~~~~   75 (106)
T cd04481           2 VIGVIVDVGPLEELPPVNKPSRKLDFEIRDLSDERLKCTLWGEYAEEFDAKFQSAGNGEPVVAVLRFWKIKEYK   75 (106)
T ss_pred             eeEEEEEecceEecccCCccceEEEEEEEeCCCCEEEEEEEHHHHHHHHHHHHHhCCCCcEEEEEEeEEEEEEc
Confidence            589999888766533   2345888999999888999999998   3666664  68888999998 7776654

RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.

>PRK15491 replication factor A; Provisional

Probab=89.92  E-value=2.6  Score=43.91  Aligned_cols=62  Identities=15%  Similarity=0.045  Sum_probs=50.0

Q ss_pred             CCCeEEEEEEecCCCccc--cCCCccEEE--EEEeeCCCCeEEEEEechHHHhhcC--cccccEEEEEC
Q 015213          129 SGCWATVAVLTEKGHPKT--SSIGQNYCI--WKLGCLEENTISVFLFGDAYQKNWK--EHAGTVFALFN  191 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~--ss~Gk~Y~i--wkLsDL~~~~VsLfLFG~A~ek~wK--l~~GtVIAILN  191 (411)
                      ..+|.+.|-|++++++|.  ...|....+  ..|.|= ...+++-||.+..+.++.  +.+|+|+-|-+
T Consensus        67 ~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~De-TG~ir~tlW~~~a~~~~~~~le~G~v~~I~~  134 (374)
T PRK15491         67 SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADE-TGSIRLTLWDDLADLIKTGDIEVGKSLNISG  134 (374)
T ss_pred             CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcC-CCeEEEEEECchhhhhccCCcCCCCEEEEee
Confidence            478999999999999998  445644444  477773 468999999998888874  99999999865

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated

Probab=89.75  E-value=0.96  Score=53.22  Aligned_cols=110  Identities=20%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             CcCceeccCccCHHHHHhHhcCCceeehhhHHhhhcCCCCCCCeEE-EEEEecCCCccccCCCccEEEEEEeeCCCCeEE
Q 015213           89 FSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWAT-VAVLTEKGHPKTSSIGQNYCIWKLGCLEENTIS  167 (411)
Q Consensus        89 ~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~~~~~~~dWVt-vGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~Vs  167 (411)
                      +-|+.|+.--+  +...+.+.......+.+|..     ...+.+|. +|+|.+. ..+.|++|++|.+.+|.|.. .++.
T Consensus       943 ~lG~yls~HPl--~~~~~~~~~~~~~~~~~l~~-----~~~g~~V~v~G~I~~v-k~~~TKkG~~mafltLeD~T-G~iE 1013 (1135)
T PRK05673        943 TLGLYLSGHPL--DGYEDELRRLRDTRLADLEP-----TEGGSVVTVAGLVVSV-RRRVTKRGNKMAIVTLEDLS-GRIE 1013 (1135)
T ss_pred             HhCcccCcCch--HHHHHHHHHhCCcCHHHHhc-----cccCceEEEEEEEEEE-EecccCCCCeEEEEEEEeCC-CcEE
Confidence            34666654433  34444554444455555531     12355555 5555555 56788899999999999997 5899


Q ss_pred             EEEechHHHhhc-CcccccEEEEECceeccCCCCCcceEEecCC
Q 015213          168 VFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFSLSVSSA  210 (411)
Q Consensus       168 LfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fsLsV~s~  210 (411)
                      +.+|.+.|+++- .+.+|.+|.|-- .|...  +....|.+++.
T Consensus      1014 vviFp~~ye~~~~~L~~g~iV~V~G-kVe~~--~~~~qlii~~I 1054 (1135)
T PRK05673       1014 VMLFSEALEKYRDLLEEDRIVVVKG-QVSFD--DGGLRLTAREV 1054 (1135)
T ss_pred             EEECHHHHHHHHHHhccCCEEEEEE-EEEec--CCeEEEEEeec
Confidence            999999999876 578899887733 44222  23456666543

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)

Probab=89.73  E-value=2.5  Score=46.56  Aligned_cols=95  Identities=20%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccc---cCCCccE--EEEEEeeCCCCeEEEEEechHHHhhcCccccc
Q 015213          111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKT---SSIGQNY--CIWKLGCLEENTISVFLFGDAYQKNWKEHAGT  185 (411)
Q Consensus       111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~---ss~Gk~Y--~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~Gt  185 (411)
                      ..|+.|.+|.....    ...-=++|||.+.++...   .++|+.+  --+.|.|..+..|.|-|||+-... +...+|.
T Consensus       296 ~~f~~i~dI~~~~~----~~~VDVIGvV~~v~~~~~i~~k~~g~~~~kR~i~L~D~sg~sI~vTLWG~~A~~-~~~~~~~  370 (608)
T TIGR00617       296 FNFVKIDDIGGYEG----NSLVDVIGIVQSVSPTQTITSRKNNKEFPKRDITLVDDSGKSVRVTLWGDDATK-FDVSVQP  370 (608)
T ss_pred             ccceEHHHhhhhcC----CCCccEEEEEeEecCceEEEEcCCCCeeeeEEEEEEeCCCCEEEEEEEhhhhhh-cCCCCCC
Confidence            45666666654321    124458999999988777   3456654  567788887778999999995444 3488999


Q ss_pred             EEEEECceeccCCCCCcceEEecCCccE
Q 015213          186 VFALFNCSVRKDAKGPGFSLSVSSASQI  213 (411)
Q Consensus       186 VIAILNP~Im~~~~g~~fsLsV~s~d~I  213 (411)
                      ||||-+..|... .  +.+|+..+..+|
T Consensus       371 Vva~kg~~V~~f-~--g~sLs~~~~S~i  395 (608)
T TIGR00617       371 VIAIKGVRVSDF-G--GKSLSTGGSSTI  395 (608)
T ss_pred             EEEEEeEEEEec-C--CceEeccCCceE
Confidence            999999988655 2  356666554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14699 replication factor A; Provisional

Probab=89.39  E-value=2.1  Score=46.15  Aligned_cols=81  Identities=10%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             CCCeEEEEEEecCCCcccc--CCCccEEEEEEeeCCC-CeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213          129 SGCWATVAVLTEKGHPKTS--SIGQNYCIWKLGCLEE-NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL  205 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~s--s~Gk~Y~iwkLsDL~~-~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL  205 (411)
                      ..+|.+.|.|++++++|+=  .+|+...+..+.-.++ ..|.+-+|++..+.|..+.+|++|-|.|..+....-.+.+.|
T Consensus       286 ~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~a~~~~~i~~Gd~v~i~~~y~~~~~~~~~~eL  365 (484)
T PRK14699        286 MNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKTNFLDEIDFDETVEVLNAYSRENTFSQQVEL  365 (484)
T ss_pred             CceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCcccccccccCCCceEEEEeEEEEeccCCccEEE
Confidence            4789999999999998873  4676666664444442 479999999977667788999999999999864432234444


Q ss_pred             EecC
Q 015213          206 SVSS  209 (411)
Q Consensus       206 sV~s  209 (411)
                      ++..
T Consensus       366 ~~~~  369 (484)
T PRK14699        366 NLGA  369 (484)
T ss_pred             EecC
Confidence            4443

>PRK02801 primosomal replication protein N; Provisional

Probab=86.19  E-value=3.2  Score=35.32  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CeEEEEEEecCCCccccCCCccEEEEEEeeCC-----C------CeEEEEEechHHHhhc-CcccccEEEEE
Q 015213          131 CWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE-----E------NTISVFLFGDAYQKNW-KEHAGTVFALF  190 (411)
Q Consensus       131 dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~-----~------~~VsLfLFG~A~ek~w-Kl~~GtVIAIL  190 (411)
                      .-+.+|-|++..+.|.+.+|.+++-++|.==.     +      ..+.+.+||+..+... .+..|+.|+|-
T Consensus         4 ~v~L~Grl~~dpelr~Tp~G~~v~~f~La~~~~~~ea~~~r~~~~~i~~va~G~~Ae~~~~~l~kGs~v~V~   75 (101)
T PRK02801          4 RLVLSGTVCRTPKRKVSPSGIPHCQFVLEHRSVQEEAGLHRQAWCRMPVIVSGNQFQAITQSITVGSKITVQ   75 (101)
T ss_pred             EEEEEEEECcCcceEECCCCCeEEEEEEEEeCeEecCCCceeEEEEEEEEEEcHHHHHHHhhcCCCCEEEEE
Confidence            35789999999999999999999988884311     1      1388999999988888 59999999873

>PRK07211 replication factor A; Reviewed

Probab=83.53  E-value=6.6  Score=42.49  Aligned_cols=89  Identities=12%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             CeEEEEEEecCCCcccc--CCCccEE--EEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEE
Q 015213          131 CWATVAVLTEKGHPKTS--SIGQNYC--IWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLS  206 (411)
Q Consensus       131 dWVtvGVIv~Ks~pK~s--s~Gk~Y~--iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLs  206 (411)
                      ..-++|+|.+-++++.-  .+|+.+.  -..|.|=.+ .|.|-|||+..+.  .+.+|++|+|-|+.|..... .+.+|+
T Consensus       280 ~vdV~GvV~~v~~~rtf~r~dG~~~~vr~l~l~D~TG-~IrvTLWg~~A~~--~i~~GdvV~Ikg~~V~dg~~-ggleLS  355 (485)
T PRK07211        280 TVDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDDTG-DIRVALWGEKADL--DIGPGDEVVAADVEIQDGWQ-DDLEAS  355 (485)
T ss_pred             ceeEEEEEEEccCcEEEEcCCCCEeEEEEEEEEcCCC-cEEEEEeCccccC--CCCCCCEEEEEccEEEecCC-CCEEEE
Confidence            45689999999988773  3577544  455666654 8999999996533  68999999999999966432 468999


Q ss_pred             ecCCccEEEeeeeccCc
Q 015213          207 VSSASQIIKMGTSVDYG  223 (411)
Q Consensus       207 V~s~d~ILeIG~S~DlG  223 (411)
                      +.....|..|....|..
T Consensus       356 ~g~~s~i~~~~~~~~~~  372 (485)
T PRK07211        356 AGWQSTVVVLDDGADAA  372 (485)
T ss_pred             ecCCceEEEcccccccc
Confidence            99989999888766643

>PRK07374 dnaE DNA polymerase III subunit alpha; Validated

Probab=83.48  E-value=3.6  Score=48.79  Aligned_cols=110  Identities=15%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             CcCceeccCccCHHHHHhHhcCCceeehhhHHhhhcCCCCCCCeE-EEEEEecCCCccccCCCccEEEEEEeeCCCCeEE
Q 015213           89 FSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWA-TVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTIS  167 (411)
Q Consensus        89 ~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~~~~~~~dWV-tvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~Vs  167 (411)
                      +-|+.|+.--+  +...+.+.......+.+|..     ...+.+| ++|+|... ..+.|++|+++.+.+|.|.. ..++
T Consensus       966 ~lG~yls~HPl--~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~v~g~i~~~-k~~~Tk~G~~maf~~leD~t-g~~e 1036 (1170)
T PRK07374        966 LLGFYLSDHPL--KQLTEPAKLLAPISLSSLEE-----QPDKAKVSAIAMIPEM-KQVTTRKGDRMAILQLEDLT-GSCE 1036 (1170)
T ss_pred             HhCcccCcCch--HHHHHHHHHhCCcCHHHHhc-----ccCCCEEEEEEEEEEe-EecccCCCCEEEEEEEEECC-CCEE
Confidence            44555554333  23444444444445555521     1235555 45555555 46778899999999999997 6799


Q ss_pred             EEEechHHHhhc-CcccccEEEEECceeccCCCCCcceEEecCC
Q 015213          168 VFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFSLSVSSA  210 (411)
Q Consensus       168 LfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fsLsV~s~  210 (411)
                      +.+|-+.|+++- .+.+|.++.|- -.|-..  +....|.++..
T Consensus      1037 ~vvFp~~y~~~~~~l~~~~~~~v~-g~v~~~--~~~~~~~~~~i 1077 (1170)
T PRK07374       1037 AVVFPKSYERLSDHLMTDTRLLVW-AKVDRR--DDRVQLIIDDC 1077 (1170)
T ss_pred             EEECHHHHHHHHHHhccCCEEEEE-EEEEec--CCeEEEEEeee
Confidence            999999999986 47888877763 344221  22356666543

>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)

Probab=83.13  E-value=5.1  Score=32.30  Aligned_cols=59  Identities=14%  Similarity=0.136  Sum_probs=45.7

Q ss_pred             EEEEEEecCCCccccCCCccEEEEEEeeCC-----------CCeEEEEEechHHHhhc-CcccccEEEEEC
Q 015213          133 ATVAVLTEKGHPKTSSIGQNYCIWKLGCLE-----------ENTISVFLFGDAYQKNW-KEHAGTVFALFN  191 (411)
Q Consensus       133 VtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~-----------~~~VsLfLFG~A~ek~w-Kl~~GtVIAILN  191 (411)
                      .++|-|+.....+.+.+|+.|+.++|.--.           ...+.+.+||+..+..- .++.|+.|.|--
T Consensus         2 ~l~G~l~~~p~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~~~~~kG~~V~v~G   72 (100)
T cd04496           2 ILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEG   72 (100)
T ss_pred             EEEEEecCCCEEEECCCCCEEEEEEEEEcCceecccccccccEEEEEEEEhHHHHHHHHHhCCCCEEEEEE
Confidence            478999999989999999999998884221           24699999999544444 489999987754

SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed

Probab=82.79  E-value=3.9  Score=48.26  Aligned_cols=76  Identities=11%  Similarity=0.129  Sum_probs=53.1

Q ss_pred             CCeEE-EEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCCCCcceEEe
Q 015213          130 GCWAT-VAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFSLSV  207 (411)
Q Consensus       130 ~dWVt-vGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fsLsV  207 (411)
                      +.+|+ +|+|+.. ..+.|++|+.+.+.+|.|.. ..+++.+|.+.|+++- .+.+|.+|.|-- .+-..  +....|.+
T Consensus       943 ~~~v~v~g~i~~~-~~~~tk~g~~maf~~leD~t-g~~e~~vFp~~y~~~~~~l~~~~~~~v~G-~v~~~--~~~~~~~~ 1017 (1107)
T PRK06920        943 KKVQRAIVYITSV-KVIRTKKGQKMAFITFCDQN-DEMEAVVFPETYIHFSDKLQEGAIVLVDG-TIELR--NHKLQWIV 1017 (1107)
T ss_pred             CCEEEEEEEEEEe-EeecCCCCCeEEEEEEeeCC-CcEEEEECHHHHHHHHHHhccCCEEEEEE-EEEec--CCcEEEEE
Confidence            44554 5555554 46778899999999999996 6799999999999986 578888877643 33221  22345655


Q ss_pred             cCC
Q 015213          208 SSA  210 (411)
Q Consensus       208 ~s~  210 (411)
                      +..
T Consensus      1018 ~~i 1020 (1107)
T PRK06920       1018 NGL 1020 (1107)
T ss_pred             eec
Confidence            543

>PRK06826 dnaE DNA polymerase III DnaE; Reviewed

Probab=82.16  E-value=4.3  Score=48.04  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             CcCceeccCccCHHHHHhHhcCCceeehhhHHhhhc----CCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCC
Q 015213           89 FSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLL----GDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEEN  164 (411)
Q Consensus        89 ~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~----~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~  164 (411)
                      +-|+.|+.--+  +.....+.......+.+|.....    .....+.+|+|+.++..-..+.|++|+++.+.+|.|.. .
T Consensus       948 ~lG~yls~HPl--~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~-g 1024 (1151)
T PRK06826        948 MLGLYISGHPL--EEYEETLKKQTSATISDIISDEEEDGESKLKDGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLY-G 1024 (1151)
T ss_pred             HhCCccCCCch--HHHHHHHHHcCCcCHHHHhhhccccccccccCCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECC-C
Confidence            45666654433  23444454444455555531110    01124566655544444456778899999999999997 6


Q ss_pred             eEEEEEechHHHhhc-CcccccEEEEECceeccCCCCCcceEEecC
Q 015213          165 TISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAKGPGFSLSVSS  209 (411)
Q Consensus       165 ~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~g~~fsLsV~s  209 (411)
                      .+.+.+|.+.|+++- .+.+|.+|.|- -.+-... +....|.++.
T Consensus      1025 ~~e~~vfp~~~~~~~~~l~~~~~~~v~-g~v~~~~-~~~~~~~~~~ 1068 (1151)
T PRK06826       1025 TVEVIVFPKVYEKYRSLLNEDNIVLIK-GRVSLRE-DEEPKLICEE 1068 (1151)
T ss_pred             cEEEEECHHHHHHHHHHhccCCEEEEE-EEEEecC-CCceEEEEee
Confidence            799999999999986 57888887763 3442211 2235565544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
3ebe_A	200	Crystal Structure Of Xenopus Laevis Replication Ini		4e-28
3h15_A	198	Crystal Structure Of Replication Initiation Factor		5e-28

>pdb|3EBE|A Chain A, Crystal Structure Of Xenopus Laevis Replication Initiation Factor Mcm10 Internal Domain Length = 200

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 85  EVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGC-WATVAVLTEKGH 143
            VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  
Sbjct: 10  HVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKIT 69
Query: 144 PKTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGP 201
           P++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G 
Sbjct: 70  PQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGT 129
Query: 202 G-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFIT 260
               LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  +
Sbjct: 130 DEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSS 189
Query: 261 TRSELK 266
            R++L+
Sbjct: 190 KRADLQ 195

>pdb|3H15|A Chain A, Crystal Structure Of Replication Initiation Factor Mcm10-Id Bound To Ssdna Length = 198

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
Query: 85  EVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSG-CWATVAVLTEKGH 143
            VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  V+ +K  
Sbjct: 8   HVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKIT 67
Query: 144 PKTSSIGQNYCIWKLGCLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGP 201
           P++S+ G+ + IW+L  L++    IS+FLFGD ++++WK   GTV  L N +  K  +G 
Sbjct: 68  PQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGT 127
Query: 202 G-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLKASDRFIT 260
               LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH      +  +
Sbjct: 128 DEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQAQYKKVSS 187
Query: 261 TRSELK 266
            R++L+
Sbjct: 188 KRADLQ 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
3ebe_A	200	Protein MCM10 homolog; OB-fold, zinc finger, CCCH,	2e-65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A Length = 200

 Score =  206 bits (525), Expect = 2e-65
 Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 4/196 (2%)

Query: 78  SKKSNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLS-GCWATVA 136
           S       VE FSGLRIR P V+ SE+  + +  + +RL+ ++N +  + L    W T  
Sbjct: 3   SPVGQQYHVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFG 62

Query: 137 VLTEKGHPKTSSIGQNYCIWKLGCLE--ENTISVFLFGDAYQKNWKEHAGTVFALFNCSV 194
           V+ +K  P++S+ G+ + IW+L  L+  +  IS+FLFGD ++++WK   GTV  L N + 
Sbjct: 63  VIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANP 122

Query: 195 RKDAKGPG-FSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACNTVINKRKGIYCGYHRLK 253
            K  +G     LSV +  +++ MG +VD G CK ++K+G  C  ++N     YC YH   
Sbjct: 123 MKPKEGTDEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHVQA 182

Query: 254 ASDRFITTRSELKGGN 269
              +  + R++L+   
Sbjct: 183 QYKKVSSKRADLQSSY 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 9e-06
 Identities = 53/410 (12%), Positives = 103/410 (25%), Gaps = 134/410 (32%)

Query: 1   MSNHQEDLSLLLSLQDKFLE-TPPGSPSNPGSSSPGYLSDDGSPRQRGQVDMSAFRNIVQ 59
           + N     ++L  LQ    +  P  +  +  SS+            R  +    + N   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--- 245

Query: 60  DCLDYEPKPVDKIKKPKLSKKSNDPEVENFS-GLRI----RNPVVAPSELSERFSEIRFV 114
            CL      +  ++  K            F+   +I    R   V     +   + I   
Sbjct: 246 -CLLV----LLNVQNAKA--------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 115 RLSTIKNLLLGDTLSGC--WATVAV--LTE---KGHP-KTSSIG-------------QNY 153
             S    L   +  S    +       L       +P + S I              ++ 
Sbjct: 293 HHS--MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 154 CIWKLGCLEENTISVF---LFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSV--- 207
              KL       I      L    Y+K +        ++F       A  P   LS+   
Sbjct: 351 NCDKL----TTIIESSLNVLEPAEYRKMFDR-----LSVF----PPSAHIPTILLSLIWF 397

Query: 208 ---SSASQIIKMGTSVDYGVCKGKRKDG----------MAC---------NTVINKRKGI 245
               S   ++ +     Y + + + K+           +            ++++     
Sbjct: 398 DVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 246 -------------------YCGYHRLKASD---------------RFITTRSELKGGNLR 271
                              + G+H LK  +               RF+    E K   +R
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFL----EQK---IR 508

Query: 272 TAFRSPLNSEGIYLFDPLTDRTNLQK---PKQPVKVLSVEGLKKALSNAG 318
               +  N+ G  + + L      +       P     V  +   L    
Sbjct: 509 HD-STAWNASG-SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 58/331 (17%), Positives = 95/331 (28%), Gaps = 81/331 (24%)

Query: 3   NHQEDLSLLLSLQDKFLETPPGS-PSNPGSSSPGYLS------DDGSPR-QR-GQVDMSA 53
              E  SLLL    K+L+  P   P    +++P  LS       DG         V+   
Sbjct: 299 TPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 54  FRNIVQDCLDY-EPK------------PVD-KIKKPKLS-----KKSNDPEVENFSGLRI 94
              I++  L+  EP             P    I    LS        +D          +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-------VV 407

Query: 95  RNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYC 154
            N +   S + ++  E       +I ++ L +         A+     H    SI  +Y 
Sbjct: 408 VNKLHKYSLVEKQPKESTI----SIPSIYL-ELKVKLENEYAL-----H---RSIVDHYN 454

Query: 155 IWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVSSASQII 214
           I K    + + +    + D Y   +  H G    L N       +   F         + 
Sbjct: 455 IPK--TFDSDDLIP-PYLDQY---FYSHIG--HHLKNI--EHPERMTLF-------RMVF 497

Query: 215 KMGTSVDYGVCKGK-RKDGMACNTVINKRKGIYCGYHRLKASDRFITTRSELKGGNLRTA 273
                +D+   + K R D  A N        I     +LK    +I          +   
Sbjct: 498 -----LDFRFLEQKIRHDSTAWNA----SGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 274 FRSPLNSEGIYLFDPLTD--RTNLQKPKQPV 302
                  E   +    TD  R  L    + +
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
3ebe_A	200	Protein MCM10 homolog; OB-fold, zinc finger, CCCH,	100.0
2k50_A	115	Replication factor A related protein; uncharacteri	97.1
1o7i_A	119	SSB, SSO2364, single stranded DNA binding protein;	96.97
1ynx_A	114	Replication factor-A protein 1; canonical OB fold,	96.87
3dm3_A	105	Replication factor A; probably plays AN essential	96.33
2k75_A	106	Uncharacterized protein TA0387; closed beta barrel	95.82
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	95.72
3e0e_A	97	Replication protein A; structural genomics, PSI-2,	95.45
4gop_C	444	Putative uncharacterized protein; OB fold, ssDNA b	93.99
1qzg_A	187	Protection of telomeres protein 1; protrein-DNA co	93.64
1xjv_A	294	Protection of telomeres 1; protein-DNA complex, si	93.44
1jmc_A	246	Protein (replication protein A (RPA)); human ssDNA	91.02
4gop_C	444	Putative uncharacterized protein; OB fold, ssDNA b	90.88
1jb7_A	495	Telomere-binding protein alpha subunit; DNA-protei	88.92
3en2_A	101	Probable primosomal replication protein N; PRIB RS	85.5
2kbn_A	109	Conserved protein; nucleic acid binding protein, b	84.7

>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A

Probab=100.00  E-value=2e-64  Score=471.37  Aligned_cols=188  Identities=34%  Similarity=0.670  Sum_probs=161.3

Q ss_pred             CCCCcccCCcCceeccCccCHHHHHhHhcCCceeehhhHHhhhcCCCC-CCCeEEEEEEecCCCccccCCCccEEEEEEe
Q 015213           81 SNDPEVENFSGLRIRNPVVAPSELSERFSEIRFVRLSTIKNLLLGDTL-SGCWATVAVLTEKGHPKTSSIGQNYCIWKLG  159 (411)
Q Consensus        81 ~~~~~~Ep~SGLrL~~R~IS~~~L~e~l~~~k~vrls~Lk~~v~~~~~-~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLs  159 (411)
                      .++..+||||||||++|+||+++|+++|++++|++|++|++.++++.+ ++||||||||++|++||++++|++|++|+|+
T Consensus         6 ~~~~~~E~~Sglrl~~r~is~~~l~~~~~~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~   85 (200)
T 3ebe_A            6 GQQYHVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSIWRLN   85 (200)
T ss_dssp             --CCCBCTTTCCBEESCSSCHHHHHHHHTTCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CCEEEEEE
T ss_pred             CCcccccCccCcEEecccCCHHHHHHHhcCCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeEEEEEEE
Confidence            356789999999999999999999999999999999999999988776 4799999999999999999999999999999


Q ss_pred             eCCC--CeEEEEEechHHHhhcCcccccEEEEECceeccCCC-CCcceEEecCCccEEEeeeeccCccceeeecCCcccc
Q 015213          160 CLEE--NTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAK-GPGFSLSVSSASQIIKMGTSVDYGVCKGKRKDGMACN  236 (411)
Q Consensus       160 DL~~--~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~-g~~fsLsV~s~d~ILeIG~S~DlG~CKa~kKdG~~Ct  236 (411)
                      ||.+  ++|+|||||+||++|||+++|+|||||||+||+++. .+.|+|+|+++++||+||.|+|||+|++++|||++|+
T Consensus        86 DL~~~~~~V~lfLFg~a~~~~~k~~~G~ViaiLNP~i~~~~~~~~~~sLsv~~~~~Il~IG~a~DlG~Ck~~kkdG~~C~  165 (200)
T 3ebe_A           86 DLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCT  165 (200)
T ss_dssp             CSSSTTCCEEEEECHHHHHHHTTCCTTEEEEEESCEECCCCTTCCCEEEECSSGGGEEEEEEETTEEECSSBCTTSCBCC
T ss_pred             ecCCCCcEEEEEEechHHHHhcCcCCceEEEEECCEEccCCCCCcceEEEECCcccEEEEEecccCcEeeCEecCCCcCC
Confidence            9986  789999999999999999999999999999998764 4689999999999999999999999999999999999


Q ss_pred             cccccccccccccchHHHhhhhccCCceecCC
Q 015213          237 TVINKRKGIYCGYHRLKASDRFITTRSELKGG  268 (411)
Q Consensus       237 ~~VNk~~~eyC~yHv~~a~rK~~s~R~EL~gg  268 (411)
                      +|||+++|+||+||++.+++|.+++||||||+
T Consensus       166 ~~Vn~~~~eyC~yHv~~~~~k~~s~R~El~~s  197 (200)
T 3ebe_A          166 QMVNLNDCEYCQYHVQAQYKKVSSKRADLQSS  197 (200)
T ss_dssp             CEEETTTCSSCHHHHHHHHTC-----------
T ss_pred             CcEeCCcCcccHhHHHHHHHHhhcCChhhccc
Confidence            99999999999999999999999999999986

>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.10  E-value=0.0034  Score=52.15  Aligned_cols=84  Identities=11%  Similarity=0.094  Sum_probs=67.5

Q ss_pred             CeEEEEEEecCCCcc--ccCCC--ccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEE
Q 015213          131 CWATVAVLTEKGHPK--TSSIG--QNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLS  206 (411)
Q Consensus       131 dWVtvGVIv~Ks~pK--~ss~G--k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLs  206 (411)
                      ...++|+|.++++++  .+++|  ++|....|.|=. .+|.+-+|++..+.+..+.+|++|+|-|..+...- .+...|+
T Consensus        18 ~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T-G~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~f-~g~~qL~   95 (115)
T 2k50_A           18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT-GELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGF-GGRKEAH   95 (115)
T ss_dssp             EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT-EEEEEEEETTGGGGGGTCCTTSEEEEEEEEECCCS-SSSCEEE
T ss_pred             EeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC-CeEEEEEeCchhhhhhcCCCCCEEEEEeeEEcccc-CCeEEEE
Confidence            346789999998888  67788  789999999975 59999999998777778999999999998875421 1358888


Q ss_pred             ecCCccEEEe
Q 015213          207 VSSASQIIKM  216 (411)
Q Consensus       207 V~s~d~ILeI  216 (411)
                      +.....|.+.
T Consensus        96 ~~~~~~i~~~  105 (115)
T 2k50_A           96 LMPRSTVEVL  105 (115)
T ss_dssp             ECTTCCEEEE
T ss_pred             ECCCceEEEC
Confidence            8887766554

>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3

Probab=96.97  E-value=0.003  Score=53.32  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CCCeEEEEEEecCCCcc--ccCCCc-cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213          129 SGCWATVAVLTEKGHPK--TSSIGQ-NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL  205 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK--~ss~Gk-~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL  205 (411)
                      ...|-++|+|.++++++  .+++|+ .|....|.|=. .+|.+-||++..+   .+.+|+||.|-|..+...+  +...|
T Consensus        12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~T-G~I~~tlW~~~~~---~~~~G~vv~i~~g~v~~~~--g~~qL   85 (119)
T 1o7i_A           12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDET-GRVKLTLWGKHAG---SIKEGQVVKIENAWTTAFK--GQVQL   85 (119)
T ss_dssp             CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETT-EEEEEEEEGGGTT---CCCTTCEEEEEEEEEEEET--TEEEE
T ss_pred             CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCC-CEEEEEEECChhh---cCCCCCEEEEEeEEEEEeC--CEEEE
Confidence            34799999999999877  678896 89999999976 4699999998654   3799999999999996653  35899


Q ss_pred             EecCCccEEEee
Q 015213          206 SVSSASQIIKMG  217 (411)
Q Consensus       206 sV~s~d~ILeIG  217 (411)
                      +|.....|.+++
T Consensus        86 ~i~~~~~i~~~~   97 (119)
T 1o7i_A           86 NAGSKTKIAEAS   97 (119)
T ss_dssp             EECTTCEEEECC
T ss_pred             EECCCEEEEEcC
Confidence            999888888776

>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0046  Score=51.92  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             CCCCeEEEEEEecCCCccccC--CC-ccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213          128 LSGCWATVAVLTEKGHPKTSS--IG-QNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK----  199 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~ss--~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~----  199 (411)
                      ...+|.+.|-|+.|+++|.=.  +| .+..-+.|.|=.+ ++.+.+|++..++|+ .+++|.|+.|-|..|.+.+.    
T Consensus        13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~   91 (114)
T 1ynx_A           13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTN   91 (114)
T ss_dssp             TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSS
T ss_pred             CCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCccc
Confidence            456899999999999876622  22 2355566888877 999999999999888 58999999999999987542    


Q ss_pred             -CCcceEEecCCccEEEe
Q 015213          200 -GPGFSLSVSSASQIIKM  216 (411)
Q Consensus       200 -g~~fsLsV~s~d~ILeI  216 (411)
                       .+.+.|.+.....|-++
T Consensus        92 ~~~~yei~f~~~T~I~~~  109 (114)
T 1ynx_A           92 LTHPYELNLDRDTVIEEC  109 (114)
T ss_dssp             SSSCEEEEECSSCEEEES
T ss_pred             CCCCEEEEECCCCEEEEC
Confidence             24677777765555443

>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}

Probab=96.33  E-value=0.0078  Score=50.29  Aligned_cols=75  Identities=11%  Similarity=-0.017  Sum_probs=56.7

Q ss_pred             CCeEEEEEEecCCCccc--cCCCccEE--EEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213          130 GCWATVAVLTEKGHPKT--SSIGQNYC--IWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL  205 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~--ss~Gk~Y~--iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL  205 (411)
                      .+|-++|+|.++++++.  +++|+...  -..|.|=. ..|.+-||++....  .+.+|++|+| |..+..... ++..|
T Consensus        15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~T-G~IrvtlW~~~a~~--~l~~Gdvv~i-~g~vk~~~~-g~~eL   89 (105)
T 3dm3_A           15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDET-GSIRVTLWDNLTDI--DVGRGDYVRV-RGYIREGYY-GGLEC   89 (105)
T ss_dssp             EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETT-EEEEEEEEGGGGGS--CCCTTCEEEE-EEEEEECTT-SSEEE
T ss_pred             CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECccccc--ccCCCCEEEE-EEEEEEccC-CCEEE
Confidence            68999999999998875  45786544  45566643 48999999997655  8999999999 998866432 24666


Q ss_pred             EecC
Q 015213          206 SVSS  209 (411)
Q Consensus       206 sV~s  209 (411)
                      ++.+
T Consensus        90 ~~g~   93 (105)
T 3dm3_A           90 TANY   93 (105)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            6654

>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}

Probab=95.82  E-value=0.021  Score=47.57  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             CCeEEEEEEecCCCccccCCCcc--EEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEe
Q 015213          130 GCWATVAVLTEKGHPKTSSIGQN--YCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSV  207 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~ss~Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV  207 (411)
                      .++.++|.|.++++++.+++|++  |....|.|=. ..|.+-||++.      +.+|++|-|-|..+...+  ....|.|
T Consensus        14 ~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeT-G~I~~tlW~~~------l~~Gdvv~i~ng~v~~~~--g~~~L~v   84 (106)
T 2k75_A           14 PYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDT-ARIRISSFGKQ------LQDSDVVRIDNARVAQFN--GYLSLSV   84 (106)
T ss_dssp             SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSS-CEEEEEEESSC------CCTTEEEEEEEEEEEEET--TEEEEEE
T ss_pred             ceEEEEEEEEEccccccccCCCeeEEEEEEEEcCC-CeEEEEEEcCc------cCCCCEEEEEeeEEeEEC--CEEEEEE
Confidence            34788999999998887778874  9999999965 58999999987      999999999999996553  3589999


Q ss_pred             cCCccEEEeeeecc
Q 015213          208 SSASQIIKMGTSVD  221 (411)
Q Consensus       208 ~s~d~ILeIG~S~D  221 (411)
                      .....|-+||.-.-
T Consensus        85 ~~~~~I~~~~~~~~   98 (106)
T 2k75_A           85 GDSSRIESVNVNIP   98 (106)
T ss_dssp             CTTSEEEECCSCCC
T ss_pred             CCcEEEEECCCCCc
Confidence            99889988885433

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A

Probab=95.72  E-value=0.054  Score=50.15  Aligned_cols=87  Identities=15%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             CCCCeEEEEEEecCCCcccc--CCC-ccEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213          128 LSGCWATVAVLTEKGHPKTS--SIG-QNYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK----  199 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~s--s~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~----  199 (411)
                      ...+|.+.|-|+.|++.|.=  .+| ..+.-+.|.|=.+ .|.+.+|++..++|+ .+++|.|+.|-|..|.+.+.    
T Consensus        17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~~~v~~~~~~y~~   95 (246)
T 1jmc_A           17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTA   95 (246)
T ss_dssp             TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCC
T ss_pred             CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECCCEEEEcccCccc
Confidence            45699999999999998752  222 2355667888777 999999999988887 48999999999999976531    


Q ss_pred             -CCcceEEecCCccEEE
Q 015213          200 -GPGFSLSVSSASQIIK  215 (411)
Q Consensus       200 -g~~fsLsV~s~d~ILe  215 (411)
                       .+.+.|.+.....|.+
T Consensus        96 ~~~~~ei~~~~~T~I~~  112 (246)
T 1jmc_A           96 VKNDYEMTFNNETSVMP  112 (246)
T ss_dssp             CCCSEEEECCTTCEEEE
T ss_pred             CCCCEEEEEcCCcEEEE
Confidence             2456666665444444

>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A

Probab=95.45  E-value=0.036  Score=45.32  Aligned_cols=75  Identities=15%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             CCeEEEEEEecCCCccc--cCCCc--cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceE
Q 015213          130 GCWATVAVLTEKGHPKT--SSIGQ--NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSL  205 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~--ss~Gk--~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsL  205 (411)
                      .+|.++|+|.++++++.  .++|+  .+.-..|.|=. .+|.+-||++..+.  .+.+|++|.| |..+.....  ...|
T Consensus        12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeT-G~I~~tlW~~~~~~--~i~~Gdvv~i-~g~v~~~~~--~~el   85 (97)
T 3e0e_A           12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDT-GSIRGTLWNELADF--EVKKGDIAEV-SGYVKQGYS--GLEI   85 (97)
T ss_dssp             EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETT-EEEEEEEEGGGGGC--CCCTTCEEEE-EEEEEEC----CEEE
T ss_pred             CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCC-CcEEEEEECCcccc--ccCCCCEEEE-EEEEEEcCC--eEEE
Confidence            68999999999998877  44674  57888888854 59999999997655  8999999999 988755422  4556


Q ss_pred             EecCC
Q 015213          206 SVSSA  210 (411)
Q Consensus       206 sV~s~  210 (411)
                      .+.+.
T Consensus        86 ~~g~~   90 (97)
T 3e0e_A           86 SVDNI   90 (97)
T ss_dssp             EEEEE
T ss_pred             EECCC
Confidence            65543

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=93.99  E-value=0.25  Score=49.98  Aligned_cols=81  Identities=16%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             CCCCeEEEEEEecCCCcccc--CCC-ccEEEEEEeeCCCCeEEEEEechHHHhhcC-cccccEEEEECceeccCCC----
Q 015213          128 LSGCWATVAVLTEKGHPKTS--SIG-QNYCIWKLGCLEENTISVFLFGDAYQKNWK-EHAGTVFALFNCSVRKDAK----  199 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~s--s~G-k~Y~iwkLsDL~~~~VsLfLFG~A~ek~wK-l~~GtVIAILNP~Im~~~~----  199 (411)
                      ...+|.+.|-|+.|++.|.=  .+| ..+.-+.|.|=.+ .|.+.+|++..++|+. +++|.|+.|-|..|.+.+.    
T Consensus        12 ~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~   90 (444)
T 4gop_C           12 YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSN   90 (444)
T ss_dssp             TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCS
T ss_pred             CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCcccc
Confidence            35799999999999998863  222 2355566778655 9999999999999885 8999999999999976432    


Q ss_pred             -CCcceEEecC
Q 015213          200 -GPGFSLSVSS  209 (411)
Q Consensus       200 -g~~fsLsV~s  209 (411)
                       .+.+-|.++.
T Consensus        91 ~~~~~ei~~~~  101 (444)
T 4gop_C           91 LQNEYEITFEN  101 (444)
T ss_dssp             CCCSEEEEECT
T ss_pred             CCCCEEEEEcC
Confidence             2345555543

>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A

Probab=93.64  E-value=0.072  Score=49.25  Aligned_cols=69  Identities=12%  Similarity=0.011  Sum_probs=57.4

Q ss_pred             CCeEEEEEEecCCCccccCCCc--cEEEEEEeeCC----CCeEEEEEechHHHhhcCc-ccccEEEEECceeccCC
Q 015213          130 GCWATVAVLTEKGHPKTSSIGQ--NYCIWKLGCLE----ENTISVFLFGDAYQKNWKE-HAGTVFALFNCSVRKDA  198 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~ss~Gk--~Y~iwkLsDL~----~~~VsLfLFG~A~ek~wKl-~~GtVIAILNP~Im~~~  198 (411)
                      +---++|||++-..|+.+..|+  -.+.++|.|-.    ...|.+.+|..-.+.+=.+ .+||||.|-|-.|...+
T Consensus        43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GDIIlL~rvkiq~~~  118 (187)
T 1qzg_A           43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYR  118 (187)
T ss_dssp             EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEET
T ss_pred             CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCCEEEEEEEEEEEEC
Confidence            4567999999999999996666  46889999975    3479999999877777777 99999999999997654

>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A

Probab=93.44  E-value=0.11  Score=50.16  Aligned_cols=81  Identities=11%  Similarity=0.073  Sum_probs=62.6

Q ss_pred             CCceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCc-ccccEEE
Q 015213          110 EIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKE-HAGTVFA  188 (411)
Q Consensus       110 ~~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl-~~GtVIA  188 (411)
                      ...|+.|++|.       ....--++|||++.+.|+.++...-++.++|.|-....|.+.+|..-.+.+=.+ .+|+||.
T Consensus         3 ~y~y~~l~~l~-------~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~   75 (294)
T 1xjv_A            3 NYIYTPLNQLK-------GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVR   75 (294)
T ss_dssp             CCCCCCGGGCC-------SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEE
T ss_pred             cceEEEHHHhh-------CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEE
Confidence            35566676541       234567999999999998885445578899999765679999999766666667 9999999


Q ss_pred             EECceeccC
Q 015213          189 LFNCSVRKD  197 (411)
Q Consensus       189 ILNP~Im~~  197 (411)
                      |=|-.|...
T Consensus        76 l~~vki~~~   84 (294)
T 1xjv_A           76 FHRLKIQVY   84 (294)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            999998754

>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A

Probab=91.02  E-value=0.7  Score=42.56  Aligned_cols=95  Identities=19%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCcccc---CCCcc--EEEEEEeeCCCCeEEEEEechHHHhhcCccccc
Q 015213          111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTS---SIGQN--YCIWKLGCLEENTISVFLFGDAYQKNWKEHAGT  185 (411)
Q Consensus       111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~s---s~Gk~--Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~Gt  185 (411)
                      ..|+++.+|.. +..   ...-=++|+|++-++.+.-   ++|+.  ...+.|.|-.+..|.+-|||+..+.+- ...|.
T Consensus       124 ~~f~~i~~i~~-~~~---~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~-~~~~~  198 (246)
T 1jmc_A          124 FDFTGIDDLEN-KSK---DSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFD-GSRQP  198 (246)
T ss_dssp             CCBCCGGGGGG-SCT---TCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHCC-CTTCC
T ss_pred             eeeEEHHHHhc-ccC---CCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhhhcc-cCCCC
Confidence            35777777765 111   1223489999999987652   24654  556777888767899999999665543 68999


Q ss_pred             EEEEECceeccCCCCCcceEEecCCccE
Q 015213          186 VFALFNCSVRKDAKGPGFSLSVSSASQI  213 (411)
Q Consensus       186 VIAILNP~Im~~~~g~~fsLsV~s~d~I  213 (411)
                      ||+|-+..|...   ++.+|++....+|
T Consensus       199 vv~i~~~~v~~f---~g~~ls~~~~s~i  223 (246)
T 1jmc_A          199 VLAIKGARVSDF---GGRSLSVLSSSTI  223 (246)
T ss_dssp             EEEEEEEEEECT---TSSEEECCSSCEE
T ss_pred             EEEEEEEEEEec---CCeEEEecCcceE
Confidence            999999999655   2467777554444

>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}

Probab=90.88  E-value=1.1  Score=45.39  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=66.5

Q ss_pred             CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccc--cC-CCc--cEEEEEEeeCCCCeEEEEEechHHHhhc---Ccc
Q 015213          111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKT--SS-IGQ--NYCIWKLGCLEENTISVFLFGDAYQKNW---KEH  182 (411)
Q Consensus       111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~--ss-~Gk--~Y~iwkLsDL~~~~VsLfLFG~A~ek~w---Kl~  182 (411)
                      ..|++|.+|... ..   ...-=++|+|.+-++.+.  ++ +|+  ....+.|.|..+..|.+-|||+-.+.+-   ...
T Consensus       119 ~~f~~i~~i~~~-~~---~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~  194 (444)
T 4gop_C          119 YEFVRINELESV-EA---NQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVD  194 (444)
T ss_dssp             CCBCCGGGGGGS-CS---SCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSS
T ss_pred             ecccCHHHHhcc-CC---CCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccC
Confidence            457788887763 11   122338999999998765  22 465  4667788888777999999999655433   378


Q ss_pred             cccEEEEECceeccCCCCCcceEEecCCccE
Q 015213          183 AGTVFALFNCSVRKDAKGPGFSLSVSSASQI  213 (411)
Q Consensus       183 ~GtVIAILNP~Im~~~~g~~fsLsV~s~d~I  213 (411)
                      .|.||+|-+..|...+ |  .+|++.+...|
T Consensus       195 ~~~VV~i~~~kV~~f~-G--~~ls~~~~s~i  222 (444)
T 4gop_C          195 EKPVLAFKGVKVGDFG-G--RSLSMFSSSTM  222 (444)
T ss_dssp             SCCEEEEESCEEECTT-S--SEEECCTTCEE
T ss_pred             CCCEEEEEeEEEeecC-C--eEEeccccceE
Confidence            8999999999997542 3  46766544444

>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A

Probab=88.92  E-value=0.56  Score=48.94  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             CCceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccccCCCccEEEEEEeeCCCC-------eE-----EEEEechHHHh
Q 015213          110 EIRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLEEN-------TI-----SVFLFGDAYQK  177 (411)
Q Consensus       110 ~~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~-------~V-----sLfLFG~A~ek  177 (411)
                      ...|+.|.++..     ...+.--++|||++-+.|+.+....-.+.++|.|-.-.       .+     .|.+|..-.+.
T Consensus        35 ~y~y~~L~~a~~-----~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~  109 (495)
T 1jb7_A           35 KYEYVELAKASL-----TSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED  109 (495)
T ss_dssp             -CCBCCTTTSCS-----SCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG
T ss_pred             CCccEEHHHHHh-----ccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHH
Confidence            345555543331     13456689999999999998865555688999995421       25     99999987777


Q ss_pred             hcCc-ccccEEEEECceeccCC
Q 015213          178 NWKE-HAGTVFALFNCSVRKDA  198 (411)
Q Consensus       178 ~wKl-~~GtVIAILNP~Im~~~  198 (411)
                      +=.+ .+||||.|-|-.|...+
T Consensus       110 LP~V~~~GDII~LhrvkIq~~n  131 (495)
T 1jb7_A          110 LPIIHRAGDIIRVHRATLRLYN  131 (495)
T ss_dssp             SCCCCEETCEEEEEEEEEEEET
T ss_pred             CCCCCCCCCEEEEEEEEEEEEC
Confidence            7777 79999999999997654

>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}

Probab=85.50  E-value=2.2  Score=35.45  Aligned_cols=62  Identities=18%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             CCeEEEEEEecCCCccccCCCccEEEEEEeeC---C--C-----Ce-EEEEEechHHHhhcCcccccEEEEEC
Q 015213          130 GCWATVAVLTEKGHPKTSSIGQNYCIWKLGCL---E--E-----NT-ISVFLFGDAYQKNWKEHAGTVFALFN  191 (411)
Q Consensus       130 ~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL---~--~-----~~-VsLfLFG~A~ek~wKl~~GtVIAILN  191 (411)
                      ...+.+|-|+...+.|.|.+|.+.+-+.|--=   .  +     .. +.+.+||+..+..+++..|+.|+|--
T Consensus         3 N~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~VeG   75 (101)
T 3en2_A            3 NRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVG   75 (101)
T ss_dssp             CCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEEE
T ss_pred             CEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEEE
Confidence            35789999999999999999999888877421   1  1     13 88899999888888899999998854

>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A

Probab=84.70  E-value=4.1  Score=33.66  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             CCe-EEEEEEecCCCccccCCCccEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcceEEec
Q 015213          130 GCW-ATVAVLTEKGHPKTSSIGQNYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFSLSVS  208 (411)
Q Consensus       130 ~dW-VtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fsLsV~  208 (411)
                      +.| -++|.|.+...+   ++|+.|..+.|.|=. ..|.+-+|++.  ..-.+.+|++|-|-|..+...+  ..+.|.|.
T Consensus        15 ~~~v~v~~~V~~~~~~---~~~~~~~~~~l~DeT-G~I~~t~W~~~--~~~~~~~G~~V~i~n~~v~~~~--G~~~L~v~   86 (109)
T 2kbn_A           15 GQWANLKAKVIQLWEN---THESISQVGLLGDET-GIIKFTIWKNA--ELPLLEQGESYLLRSVVVGEYN--DRFQVQVN   86 (109)
T ss_dssp             TCEEEEEEEEEEEEEC---CCSSEEEEEEEECTT-CCEEEEEEGGG--CCCCCCTTCEEEEEEEEEEEET--TEEEEEEC
T ss_pred             CCcEEEEEEEEEeEcC---CCCeEEEEEEEECCC-CeEEEEEECcc--cccccCCCCEEEEEEEEEEEEC--CEEEEEEC
Confidence            455 467888888764   357889999999986 58999999954  2337899999999999997764  35888888


Q ss_pred             CCccEEEeeee
Q 015213          209 SASQIIKMGTS  219 (411)
Q Consensus       209 s~d~ILeIG~S  219 (411)
                      ....|-++...
T Consensus        87 ~~~~I~~~~~~   97 (109)
T 2kbn_A           87 KNSSIEKLSEP   97 (109)
T ss_dssp             SSSEEEECSSC
T ss_pred             CceEEEECCCc
Confidence            87777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	411
d1jmca1	116	Replication protein A 70 KDa subunit (RPA70) {Huma	96.7
d1qzga_	170	Protection of telomeres protein 1, Pot1 {Fission y	94.69
d1xjva1	140	Protection of telomeres protein 1, Pot1 {Human (Ho	94.69
d1o7ia_	115	Archaeal ssDNA-binding protein {Archaeon Sulfolobu	94.4
d1jmca2	122	Replication protein A 70 KDa subunit (RPA70) {Huma	93.67
d1jb7a1	169	Telomere end binding protein alpha subunit {Oxytri	93.22

>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0054  Score=49.58  Aligned_cols=88  Identities=15%  Similarity=0.224  Sum_probs=66.5

Q ss_pred             CCCCeEEEEEEecCCCcccc--CCCc-cEEEEEEeeCCCCeEEEEEechHHHhhc-CcccccEEEEECceeccCCC----
Q 015213          128 LSGCWATVAVLTEKGHPKTS--SIGQ-NYCIWKLGCLEENTISVFLFGDAYQKNW-KEHAGTVFALFNCSVRKDAK----  199 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~s--s~Gk-~Y~iwkLsDL~~~~VsLfLFG~A~ek~w-Kl~~GtVIAILNP~Im~~~~----  199 (411)
                      ...+|.+.|-|++|++.+.-  ++|. ++.-+-|.|=.+ .+.+.+|++..++|+ .+++|.|+.|-|..|.+.+.    
T Consensus        11 ~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G-~I~~t~~~~~~~~f~~~l~~G~vy~i~~~~V~~~~~~y~~   89 (116)
T d1jmca1          11 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTA   89 (116)
T ss_dssp             TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCC
T ss_pred             CCCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC-CEEEEEchhhhhhhHhhcccCCEEEEcceEEEEccCcEec
Confidence            46799999999999987753  3332 455666777665 799999999999988 48999999999999976432    


Q ss_pred             -CCcceEEecCCccEEEe
Q 015213          200 -GPGFSLSVSSASQIIKM  216 (411)
Q Consensus       200 -g~~fsLsV~s~d~ILeI  216 (411)
                       .+.+-|.+.+...|.++
T Consensus        90 ~~~~yei~f~~~T~I~~~  107 (116)
T d1jmca1          90 VKNDYEMTFNNETSVMPC  107 (116)
T ss_dssp             CCCSEEEECCTTCEEEEC
T ss_pred             cCCcEEEEECCCcEEEEC
Confidence             23566777766666553

>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.69  E-value=0.019  Score=50.20  Aligned_cols=100  Identities=10%  Similarity=0.028  Sum_probs=69.8

Q ss_pred             cCHHHHHhHhcCCceeehhhHHhhhc---CC-CCCCCeEEEEEEecCCCccccCCC-ccEEE-EEEeeCC----CCeEEE
Q 015213           99 VAPSELSERFSEIRFVRLSTIKNLLL---GD-TLSGCWATVAVLTEKGHPKTSSIG-QNYCI-WKLGCLE----ENTISV  168 (411)
Q Consensus        99 IS~~~L~e~l~~~k~vrls~Lk~~v~---~~-~~~~dWVtvGVIv~Ks~pK~ss~G-k~Y~i-wkLsDL~----~~~VsL  168 (411)
                      |-+.+|.++|.-.+|-.-+.=+..++   .- +...---++|||++-+.|+.+..| +.|+. ++|+|-.    ...|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~k~~~~VnviGVV~~~~~P~rs~~G~~Dy~~tl~I~D~S~~~~~~gl~v   81 (170)
T d1qzga_           2 IDSLQLNELLNAGEYKIGELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQI   81 (170)
T ss_dssp             CCHHHHHHHHHTSEEEETTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEE
T ss_pred             cchHHHHHHHhhcceeeeeeeeehhhhhHHHhccCCEEEEEEEEeeccCceecCCCCCcEEEEEEEEcCCCCCCCCceEE
Confidence            45677888886665543332121111   11 112345689999999999998655 56655 9999975    236999


Q ss_pred             EEechHHHhhcCc-ccccEEEEECceeccCC
Q 015213          169 FLFGDAYQKNWKE-HAGTVFALFNCSVRKDA  198 (411)
Q Consensus       169 fLFG~A~ek~wKl-~~GtVIAILNP~Im~~~  198 (411)
                      .+|-...+.+=.+ .+||||.|=|-.|...+
T Consensus        82 ~iF~~~~e~LP~V~~vGDII~l~rvkvq~~~  112 (170)
T d1qzga_          82 HLFSKQGNDLPVIKQVGQPLLLHQITLRSYR  112 (170)
T ss_dssp             EEEESSSSCSCCCCSTTCEEEEEEEEEEEET
T ss_pred             EEECCChHHCCCcCCCCCEEEEEEEEEEEEC
Confidence            9999988777776 68999999999997654

>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Protection of telomeres protein 1, Pot1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.024  Score=47.75  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             CeEEEEEEecCCCccccCCCccEEE-EEEeeCCCCeEEEEEechHHHhhcCc-ccccEEEEECceeccCC
Q 015213          131 CWATVAVLTEKGHPKTSSIGQNYCI-WKLGCLEENTISVFLFGDAYQKNWKE-HAGTVFALFNCSVRKDA  198 (411)
Q Consensus       131 dWVtvGVIv~Ks~pK~ss~Gk~Y~i-wkLsDL~~~~VsLfLFG~A~ek~wKl-~~GtVIAILNP~Im~~~  198 (411)
                      ---++|||++.++|+.+ +|+.|+. ++|+|-.-..+.+.||-...+.+=.+ .+||||.|=|-.|...+
T Consensus        17 ~vnv~gVV~~~~~p~~s-~g~D~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~r~~v~~~~   85 (140)
T d1xjva1          17 IVNVYGVVKFFKPPYLS-KGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYK   85 (140)
T ss_dssp             EEEEEEEEEEEEEEEEC-SSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEET
T ss_pred             EEEEEEEEeecCCCEEc-CCCeEEEEEEEEeCCCCCeEEEEECCChHHCCCCCCCCCEEEEEEEEEEEEC
Confidence            45689999999999986 4665554 89999876789999999988888876 58999999998886654

>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Archaeal ssDNA-binding protein
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.40  E-value=0.087  Score=42.16  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=63.9

Q ss_pred             CCCCeEEEEEEecCCCcccc--CCCc-cEEEEEEeeCCCCeEEEEEechHHHhhcCcccccEEEEECceeccCCCCCcce
Q 015213          128 LSGCWATVAVLTEKGHPKTS--SIGQ-NYCIWKLGCLEENTISVFLFGDAYQKNWKEHAGTVFALFNCSVRKDAKGPGFS  204 (411)
Q Consensus       128 ~~~dWVtvGVIv~Ks~pK~s--s~Gk-~Y~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~GtVIAILNP~Im~~~~g~~fs  204 (411)
                      ...+|.+.|.|++++++|.-  .+|. .+.-+.|.|=. ..|.+-+|++..+   .+.+|++|.|-|..+...+  +...
T Consensus        11 g~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeT-G~i~~~~W~~~~~---~l~~Gdvv~i~na~v~~~~--g~~e   84 (115)
T d1o7ia_          11 NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDET-GRVKLTLWGKHAG---SIKEGQVVKIENAWTTAFK--GQVQ   84 (115)
T ss_dssp             TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETT-EEEEEEEEGGGTT---CCCTTCEEEEEEEEEEEET--TEEE
T ss_pred             CCCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCC-CeEEEEEeccccc---cCCCCCEEEEeeEEEEEEC--CeEE
Confidence            35689999999999988774  3342 34455677743 5899999998543   6899999999999997643  3578


Q ss_pred             EEecCCccEEEeee
Q 015213          205 LSVSSASQIIKMGT  218 (411)
Q Consensus       205 LsV~s~d~ILeIG~  218 (411)
                      |+++....|-+++.
T Consensus        85 l~~~~~s~i~~~~d   98 (115)
T d1o7ia_          85 LNAGSKTKIAEASE   98 (115)
T ss_dssp             EEECTTCEEEECCC
T ss_pred             EEECCCeEEEECCC
Confidence            88888777776664

>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Replication protein A 70 KDa subunit (RPA70)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.18  Score=40.82  Aligned_cols=93  Identities=18%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             CceeehhhHHhhhcCCCCCCCeEEEEEEecCCCccc--c-CCCccE--EEEEEeeCCCCeEEEEEechHHHhhcCccccc
Q 015213          111 IRFVRLSTIKNLLLGDTLSGCWATVAVLTEKGHPKT--S-SIGQNY--CIWKLGCLEENTISVFLFGDAYQKNWKEHAGT  185 (411)
Q Consensus       111 ~k~vrls~Lk~~v~~~~~~~dWVtvGVIv~Ks~pK~--s-s~Gk~Y--~iwkLsDL~~~~VsLfLFG~A~ek~wKl~~Gt  185 (411)
                      ..|++|.+|.....+    .--=++|||.+-+++++  + +.|+.+  .-+.|.|..+..|.|-|+|+-.+++ ....+.
T Consensus         2 y~F~~i~di~~~~~~----~~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i~D~t~~~i~vtLWg~~a~~~-~~~~~~   76 (122)
T d1jmca2           2 FDFTGIDDLENKSKD----SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKF-DGSRQP   76 (122)
T ss_dssp             CCBCCGGGGGGSCTT----CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHHHC-CCTTCC
T ss_pred             cccEeHHHhhccCCC----CeEEEEEEEEEccCcEEEEEcCCCCceeEEEEEEEcCCCCEEEEEEEchHhhhh-CCCCCC
Confidence            357888888653221    22448999999998877  3 356554  4677788877889999999966655 457899


Q ss_pred             EEEEECceeccCCCCCcceEEecCCc
Q 015213          186 VFALFNCSVRKDAKGPGFSLSVSSAS  211 (411)
Q Consensus       186 VIAILNP~Im~~~~g~~fsLsV~s~d  211 (411)
                      ||++-+..|...+   +.+|+..+..
T Consensus        77 Vi~~k~~~v~~~~---g~sL~~~~~s   99 (122)
T d1jmca2          77 VLAIKGARVSDFG---GRSLSVLSSS   99 (122)
T ss_dssp             EEEEEEEEEECTT---SSEEECCSSC
T ss_pred             EEEEeeeEEeecc---CceEeccCcc
Confidence            9999999986543   3466665443

>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Telomere end binding protein alpha subunit
species: Oxytricha nova [TaxId: 200597]

Probab=93.22  E-value=0.07  Score=46.17  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             CCCeEEEEEEecCCCccccCCCccEEEEEEeeCC------------CCeEEEEEechHHHhhcCc-ccccEEEEECceec
Q 015213          129 SGCWATVAVLTEKGHPKTSSIGQNYCIWKLGCLE------------ENTISVFLFGDAYQKNWKE-HAGTVFALFNCSVR  195 (411)
Q Consensus       129 ~~dWVtvGVIv~Ks~pK~ss~Gk~Y~iwkLsDL~------------~~~VsLfLFG~A~ek~wKl-~~GtVIAILNP~Im  195 (411)
                      .+.--++|||++.+.|+.+....-.|.++|.|-.            ...|.+.||-...+.+=.+ .+||||.|=|-.|.
T Consensus        14 ~~~vNv~GVV~~~~~p~~s~g~D~~~tl~I~D~S~~~~~~~~~~~~~~~l~v~~F~~~~~~LP~V~~~GDII~l~rv~i~   93 (169)
T d1jb7a1          14 AQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLR   93 (169)
T ss_dssp             CSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEE
T ss_pred             CCeEEEEEEEeecCCceecCCCcEEEEEEEEeCCCCccccccccccCCceEEEEECCCHHHCCCCCCCCCEEEEEEEEEE
Confidence            4567899999999999999765567789999963            1369999999988888776 68999999999986


Q ss_pred             cCC
Q 015213          196 KDA  198 (411)
Q Consensus       196 ~~~  198 (411)
                      ..+
T Consensus        94 ~~~   96 (169)
T d1jb7a1          94 LYN   96 (169)
T ss_dssp             EET
T ss_pred             EEC
Confidence            654