Citrus Sinensis ID: 015214

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
ccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccc
HHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccHcccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccc
mqcsgihrslGVHISKVRSATLDTWLPEQVAVIQSMGneksnsyweaelppnydrvgIENFIRAKyeekrwiprggntkspsrvseekasfhrplpsssghrytnninrvpdvrniahppnasndiaapkhsspatVKVVQQVTpslkiqepvqnseptvpksepakqEAITTAVIQHkkqnsepavpkyeppkqeasttpqrkvDYATDLFNLlctddsrendsktsndekscanlqstnastaepinsskateskVQTRYRIEDlfmgspsvipsvseksqkDVKNDVMNLfgksemvspfsidQQQSFLAAASVnsnggsqsfpinvhqpgsngihvpiqswgvvghqvpgmmmpiaDQQKYVQMRNsqllypagnfvnlptsrytdAAFFIFLFLICMHLVYHNHSV
mqcsgihrslgvHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEaelppnydrVGIENFIRAkyeekrwiprggntkspsrvseEKASfhrplpsssghrytNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPslkiqepvqnseptvpksepakQEAITTAVIQhkkqnsepavpkyeppkqeasttpqrkVDYATDLFNLLCTDdsrendsktsndekscanlqstnastaepinsskateskvQTRYRIEDlfmgspsvipsvseksqkdVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
*******RSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWI*************************************************************************************************************************************DYATDLFNLLCT*********************************************************************************************************************SNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYH****
MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP****RVGIENFIRAKYEEKR****************************************************************************************************************************************************************************************************************************************************************************************************************************RYTDAAFFIFLFLICMHLVYHN***
MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRG**********************SSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQ*****************QEAITTAVI*************************QRKVDYATDLFNLLCTDDS****************LQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRG**********************************************************************************************************************************************************************************************D**MGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNH**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
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MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGHQVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPTSRYTDAAFFIFLFLICMHLVYHNHSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q9FL69483 Probable ADP-ribosylation yes no 0.841 0.716 0.401 4e-62
Q0WQQ1232 Probable ADP-ribosylation no no 0.197 0.349 0.641 6e-26
Q5F413428 Stromal membrane-associat yes no 0.180 0.172 0.5 9e-17
Q5EA00429 Stromal membrane-associat yes no 0.180 0.172 0.487 4e-16
Q7TN29428 Stromal membrane-associat yes no 0.180 0.172 0.487 4e-16
Q8WU79429 Stromal membrane-associat yes no 0.180 0.172 0.487 4e-16
Q6ZQK5770 Arf-GAP with coiled-coil, no no 0.236 0.125 0.406 2e-15
Q5FVC7770 Arf-GAP with coiled-coil, no no 0.236 0.125 0.398 4e-15
Q9UT34320 Uncharacterized protein C yes no 0.175 0.225 0.472 4e-15
Q15057778 Arf-GAP with coiled-coil, no no 0.204 0.107 0.420 3e-14
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function desciption
 Score =  239 bits (609), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/418 (40%), Positives = 233/418 (55%), Gaps = 72/418 (17%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIEN 60
           MQCSGIHRSLGVHISKVRSATLDTWLPEQVA IQSMGN+K+NSYWEAELPPNYDRVGIEN
Sbjct: 52  MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIEN 111

Query: 61  FIRAKYEEKRWIPRGGNTKSPSRVSEE-KASFHRPLPSSSGHRYTNNINRVPDVRNIAHP 119
           FIRAKYEEKRW+ RG   +SP RV +E + S  R  P       ++ +N   + + I   
Sbjct: 112 FIRAKYEEKRWVSRGEKARSPPRVEQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPA- 170

Query: 120 PNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHK 179
               N++AA + + P   +   QV   +K Q+ ++++   V +    +++A+  A     
Sbjct: 171 SRTRNNVAATRINLPVPPQGPSQV---IKPQQKMESAATPVER----EKQAVNVA----- 218

Query: 180 KQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSK-----TSNDEKSC 234
                   P  +PP          KVD+ATDLFN+L  DDS  N S+     T  D+ S 
Sbjct: 219 --------PASDPP----------KVDFATDLFNMLSMDDSTTNTSEATPGDTPADDNSW 260

Query: 235 ANLQSTNAS-TAEPINSSKATESKVQTRYR--IEDLFMGSPSVIPSVSEKSQKDVKNDVM 291
           A  QS  +  TAE I ++K  ES          EDLF  +P++    ++++ KDVK D+M
Sbjct: 261 AGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNL---TTQQAPKDVKGDIM 317

Query: 292 NLFGKSEMVSPFSIDQQQSFLAA-------ASVNSNGGSQSFPINVHQPG-SNGIHVPIQ 343
           +LF K+ +VSPF++ QQQ  + A       A+  + GG+   P  V+Q   +N ++V   
Sbjct: 318 SLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGT---PNGVNQQAIANALNVASA 374

Query: 344 SWG-VVGHQVPGMMMPI---ADQQKY--------------VQMRNSQLLYPAGNFVNL 383
           +W    G+Q+PGM  P+   AD QK                Q + + L YP+ +F  +
Sbjct: 375 NWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTM 432
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZQK5|ACAP2_MOUSE Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2 Back     alignment and function description
>sp|Q5FVC7|ACAP2_RAT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|Q15057|ACAP2_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
359496730507 PREDICTED: probable ADP-ribosylation fac 0.873 0.708 0.546 1e-107
255560834454 ARF GTPase activator, putative [Ricinus 0.873 0.790 0.497 3e-92
359493891478 PREDICTED: probable ADP-ribosylation fac 0.878 0.755 0.501 5e-90
225461326475 PREDICTED: probable ADP-ribosylation fac 0.854 0.738 0.5 2e-88
224115066492 predicted protein [Populus trichocarpa] 0.885 0.739 0.459 4e-80
224123040478 predicted protein [Populus trichocarpa] 0.854 0.734 0.457 4e-80
255580436482 Stromal membrane-associated protein, put 0.871 0.742 0.458 1e-78
359806292500 uncharacterized protein LOC100807561 [Gl 0.866 0.712 0.457 7e-78
357452397423 Arf-GAP with coiled-coil, ANK repeat and 0.868 0.843 0.469 8e-78
357452395474 Arf-GAP with coiled-coil, ANK repeat and 0.868 0.753 0.469 1e-77
>gi|359496730|ref|XP_003635314.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Vitis vinifera] gi|302144235|emb|CBI23473.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/395 (54%), Positives = 259/395 (65%), Gaps = 36/395 (9%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIEN 60
           MQCSGIHRSLGVHISKVRSATLDTWLP+QVA IQSMGNEKSNSYWEAELPPNYDRVGIEN
Sbjct: 52  MQCSGIHRSLGVHISKVRSATLDTWLPDQVAFIQSMGNEKSNSYWEAELPPNYDRVGIEN 111

Query: 61  FIRAKYEEKRWIPRGGNTKSPSRVSEEKASFHRPLPSSSG-HRYTNNINRVPDVRNIAHP 119
           FIRAKYEEKRW+PR G   S SR S++KAS +RP P  SG HRYTNN+    D +NI HP
Sbjct: 112 FIRAKYEEKRWVPRDGKAISHSRESQQKASAYRPRPGGSGAHRYTNNVEHSSDKKNI-HP 170

Query: 120 PNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNSEPTVPKSEPAKQEAITTAVIQHK 179
           PN ++ I A K   PA  KV +Q TP  + QE VQ SE ++ K+EP KQ A  T ++   
Sbjct: 171 PNTNSSIPASKSRIPAASKVSKQTTPDPQPQENVQKSESSISKAEPVKQAATATPIV--- 227

Query: 180 KQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTSNDEKSCANLQS 239
                       PP          +VDYATDLF +L   DSRENDS+ S         QS
Sbjct: 228 -----------SPP----------RVDYATDLFRMLSVKDSRENDSEISAANGVSTGFQS 266

Query: 240 TNA-STAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSE 298
             A ST E    S   ES +Q++  IEDLF     V P + EK QKD+KND+MNLF KS 
Sbjct: 267 AEASSTVEKSTPSNPVESNIQSKTGIEDLFKDLTLVTPPILEKPQKDMKNDIMNLFEKSS 326

Query: 299 MVSPFSID--------QQQSFLAAASVNSNGGSQSFPINVHQPGSNGIHVPIQSWGVVGH 350
           MVSPFSI         QQQSFL AA+  SN GS +F  ++HQPG+NG+H+  Q+WG +GH
Sbjct: 327 MVSPFSIHQQQVAMLAQQQSFLMAAAARSN-GSHTFSGSIHQPGTNGVHLSTQNWGNIGH 385

Query: 351 QVPGMMMPIADQQKYVQMRNSQLLYPAGNFVNLPT 385
           Q PG++ P+ + QK++QM N +  + +G  V LPT
Sbjct: 386 QRPGVLTPVTEPQKHMQMGNIRPTHWSGTNVPLPT 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560834|ref|XP_002521430.1| ARF GTPase activator, putative [Ricinus communis] gi|223539329|gb|EEF40920.1| ARF GTPase activator, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359493891|ref|XP_003634688.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera] gi|302143074|emb|CBI20369.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461326|ref|XP_002284562.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115066|ref|XP_002316931.1| predicted protein [Populus trichocarpa] gi|222859996|gb|EEE97543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123040|ref|XP_002330426.1| predicted protein [Populus trichocarpa] gi|222871811|gb|EEF08942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580436|ref|XP_002531044.1| Stromal membrane-associated protein, putative [Ricinus communis] gi|223529372|gb|EEF31337.1| Stromal membrane-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359806292|ref|NP_001240964.1| uncharacterized protein LOC100807561 [Glycine max] gi|255635528|gb|ACU18115.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357452397|ref|XP_003596475.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] gi|355485523|gb|AES66726.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357452395|ref|XP_003596474.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] gi|355485522|gb|AES66725.1| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
TAIR|locus:2162580483 AGD5 "AT5G54310" [Arabidopsis 0.413 0.351 0.541 5.2e-42
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.197 0.349 0.641 1.4e-25
UNIPROTKB|Q5EA00429 SMAP2 "Stromal membrane-associ 0.180 0.172 0.487 4.3e-19
UNIPROTKB|F1NMV2224 SMAP2 "Stromal membrane-associ 0.214 0.392 0.434 8.8e-19
ASPGD|ASPL0000049357 565 AN1931 [Emericella nidulans (t 0.364 0.265 0.36 1e-18
WB|WBGene00012359495 W09D10.1 [Caenorhabditis elega 0.326 0.270 0.365 1.6e-18
ZFIN|ZDB-GENE-060920-2483 smap1 "stromal membrane-associ 0.172 0.146 0.52 1.3e-17
UNIPROTKB|E1C3Q2229 SMAP2 "Stromal membrane-associ 0.214 0.384 0.406 7.1e-17
FB|FBgn0033349517 CG8243 [Drosophila melanogaste 0.214 0.170 0.489 7.3e-17
CGD|CAL0003973387 orf19.1396 [Candida albicans ( 0.418 0.444 0.318 1.2e-16
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 98/181 (54%), Positives = 120/181 (66%)

Query:     1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRVGIEN 60
             MQCSGIHRSLGVHISKVRSATLDTWLPEQVA IQSMGN+K+NSYWEAELPPNYDRVGIEN
Sbjct:    52 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIEN 111

Query:    61 FIRAKYEEKRWIPRGGNTKSPSRVSEEKA-SFHRPLPS-SSGHRYTNNINRVPDVRNIAH 118
             FIRAKYEEKRW+ RG   +SP RV +E+  S  R  P    GH  ++ +N   + + I  
Sbjct:   112 FIRAKYEEKRWVSRGEKARSPPRVEQERRKSVERSGPGYEHGHS-SSPVNLFEERKTIP- 169

Query:   119 PPNASNDIAAPKHSSPATVKVVQQVT-PSLKIQE---PVQNSEPTV---PKSEPAKQEAI 171
                  N++AA + + P   +   QV  P  K++    PV+  +  V   P S+P K +  
Sbjct:   170 ASRTRNNVAATRINLPVPPQGPSQVIKPQQKMESAATPVEREKQAVNVAPASDPPKVDFA 229

Query:   172 T 172
             T
Sbjct:   230 T 230
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0010227 "floral organ abscission" evidence=IMP
GO:0032857 "activation of ARF GTPase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA00 SMAP2 "Stromal membrane-associated protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMV2 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3Q2 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0003973 orf19.1396 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027600001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (478 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 3e-32
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 1e-25
COG5347319 COG5347, COG5347, GTPase-activating protein that r 2e-17
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-06
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  117 bits (296), Expect = 3e-32
 Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 6/78 (7%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY------D 54
           ++CSG+HRSLGVHISKVRS TLD W PEQ+  +++ GN+++N +WEA LPP        D
Sbjct: 37  IRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSD 96

Query: 55  RVGIENFIRAKYEEKRWI 72
           R   E+FIRAKY EK + 
Sbjct: 97  REKRESFIRAKYVEKLFA 114

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
KOG0703287 consensus Predicted GTPase-activating protein [Sig 99.97
smart00105112 ArfGap Putative GTP-ase activating proteins for th 99.89
PF01412116 ArfGap: Putative GTPase activating protein for Arf 99.86
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.85
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.81
PLN03131 705 hypothetical protein; Provisional 99.74
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.73
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.54
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.51
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.48
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.4
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 98.93
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 98.92
KOG0702524 consensus Predicted GTPase-activating protein [Sig 98.01
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=99.97  E-value=9.2e-31  Score=254.08  Aligned_cols=231  Identities=26%  Similarity=0.301  Sum_probs=144.4

Q ss_pred             CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCChh----hHHHHHHHHhhhCccccCCC
Q 015214            1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRV----GIENFIRAKYEEKRWIPRGG   76 (411)
Q Consensus         1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~Dr~----~rE~FIRaKYeeK~Fv~~~~   76 (411)
                      |+||||||+|||||||||||+||.|++|||++|+.+||.+||+|||++||..+++.    .+|+|||+|||+|+|+.++.
T Consensus        49 ~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~  128 (287)
T KOG0703|consen   49 LRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNAKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEE  128 (287)
T ss_pred             eecccccccccchhheeeeeeccccCHHHHHHHHHHcchhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchh
Confidence            68999999999999999999999999999999999999999999999999887654    49999999999999998762


Q ss_pred             CCCCCCccccccccCCCCCCCCCCCccCCCCccCcccccCCCCCCCCCCCCCCCccCCCCccccccccCCCCccCCCCCC
Q 015214           77 NTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNS  156 (411)
Q Consensus        77 ~p~~pS~~r~ek~~~~~~~~~R~Gh~srsS~~~~~~~K~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~k~~~~~~~~  156 (411)
                      ......+.+++.... ...+.|++|.+++-      +.- .+     ......+...+-..        .++        
T Consensus       129 ~~~s~~~~~~~~~k~-~~~~~~~~~~s~s~------~~~-~~-----~r~~~~~~~~~~~s--------~~~--------  179 (287)
T KOG0703|consen  129 DITSKPGSRDEESKR-SDKRSRKLSSSLSR------SFV-KS-----AREDQLKYFLPKTS--------QPV--------  179 (287)
T ss_pred             hcccCCCcccccccc-cccCccccccchhh------hhh-hh-----ccccccccccccCC--------CCc--------
Confidence            221111112111110 12233344333321      100 00     00000110010000        000        


Q ss_pred             CCCCCCCCcchhhhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCccccccchhhccccCCCCCCCCCCC----CCcc
Q 015214          157 EPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTS----NDEK  232 (411)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvd~atdlf~lL~~d~~~~~~s~~s----~dd~  232 (411)
                                   .+...+               .   .. ........++. +|+..|.+++   +.+++.    +.+.
T Consensus       180 -------------~~~~~~---------------~---~~-~~~i~~~~~~~-~~~s~~n~~~---~~~~~~~~~~~~~~  223 (287)
T KOG0703|consen  180 -------------DDLATF---------------Q---GP-IASPHNLQTTY-SLNSTLNIFG---SGKEAADSFTLRAA  223 (287)
T ss_pred             -------------hhhhhc---------------c---Cc-cccccchheee-cccccccccc---CccccCCCcccccc
Confidence                         000000               0   00 11456667777 8888888887   333332    7778


Q ss_pred             cccccccccccccCCCCCCCccccccchhhhHHhhhcCCCCCCCCcccccchhhhhhhhhhhccccccCCchhhHH
Q 015214          233 SCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQ  308 (411)
Q Consensus       233 ~~a~fqsa~~s~~~~~~~~~~~es~~~s~~~iedlf~~sp~v~~s~~~~~q~dvkndimslfeks~~vspf~~hqq  308 (411)
                      .|+.|+.+...+.+...+..+..+....-...+ ++++.+..+.   .      . .|++|| +-..+.||..++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~~~-~~~~~~~~~~---~------~-~~~~~~-~~~~~~~~~~~~~  287 (287)
T KOG0703|consen  224 RFAPLAVAFSTVTEDLVPFLQRNSLSEGFMEKT-LSKPKRWFGT---Q------Q-SKSSLF-FLDGNVPFGSKES  287 (287)
T ss_pred             cccccccccccCccccccccccccccccccCcc-cccccccccc---C------c-cccccc-cccccccccccCC
Confidence            888888887444466666666655554444444 7777444444   2      5 899999 9999999988764

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 6e-17
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-13
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 3e-13
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 3e-13
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 3e-13
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 2e-09
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 9e-09
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 9e-09
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-08
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 2e-07
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-07
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 5e-06
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 6e-06
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 9e-06
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 5e-05
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-04
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDR----V 56
           ++C+GIHR+LGVHIS+V+S  LD W  EQ+  +Q MGN K+N  +EA LP  + R     
Sbjct: 51  IRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDP 110
Query: 57  GIENFIRAKYEEKRWIPR 74
            +E FIR KYE+K+++ R
Sbjct: 111 AVEGFIRDKYEKKKYMDR 128
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-35
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 5e-35
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 2e-34
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 1e-32
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 2e-32
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 8e-31
2owa_A138 Arfgap-like finger domain containing protein; zinc 8e-30
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 1e-29
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 1e-27
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 5e-26
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 2e-25
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 3e-23
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-22
3o47_A329 ADP-ribosylation factor GTPase-activating protein 5e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  127 bits (320), Expect = 1e-35
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY----DRV 56
           ++C+GIHR+LGVHIS+V+S  LD W  EQ+  +Q MGN K+   +EA LP N+       
Sbjct: 53  IRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQ 112

Query: 57  GIENFIRAKYEEKRWIPRGGNTKSPSR 83
            +E FIR KYE+K++  +     S   
Sbjct: 113 AVEFFIRDKYEKKKYYDKNAIAISGPS 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 99.91
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 99.9
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 99.87
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 99.84
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 99.8
2owa_A138 Arfgap-like finger domain containing protein; zinc 99.78
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.73
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.69
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.69
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.68
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.68
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.66
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.64
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.48
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=2.7e-25  Score=194.18  Aligned_cols=76  Identities=49%  Similarity=0.909  Sum_probs=69.6

Q ss_pred             CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCC----hhhHHHHHHHHhhhCccccCCC
Q 015214            1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG   76 (411)
Q Consensus         1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~D----r~~rE~FIRaKYeeK~Fv~~~~   76 (411)
                      ++||||||+||+||||||||+||+|++++|++|+.+||..+|++||+++|..+.    ...+|+|||+||++++|+.+..
T Consensus        51 ~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~  130 (134)
T 2iqj_A           51 IRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL  130 (134)
T ss_dssp             HHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred             HhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence            479999999999999999999999999999999999999999999999987543    3568999999999999997654
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 411
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-23
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.0 bits (228), Expect = 3e-23
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 1   MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP--------PN 52
           ++CSGIHR LGVH S+++S TLD     ++ + +++GN   N   E  LP        P 
Sbjct: 39  IECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPG 98

Query: 53  YDRVGIENFIRAKYEEKRWIPR 74
            D +  +++I AKY E+R+  +
Sbjct: 99  SDMIARKDYITAKYMERRYARK 120

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 99.88
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-24  Score=182.97  Aligned_cols=75  Identities=37%  Similarity=0.650  Sum_probs=67.7

Q ss_pred             CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214            1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI   72 (411)
Q Consensus         1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv   72 (411)
                      ++|||+||+||+|||+|||++||.|++++|++|+.+||..+|++||+++|..        .+...+|+|||+||++++|+
T Consensus        39 ~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~  118 (122)
T d1dcqa2          39 IECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA  118 (122)
T ss_dssp             HHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTS
T ss_pred             hhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCccc
Confidence            4799999999999999999999999999999999999999999999998742        23457899999999999998


Q ss_pred             cCC
Q 015214           73 PRG   75 (411)
Q Consensus        73 ~~~   75 (411)
                      .+.
T Consensus       119 ~k~  121 (122)
T d1dcqa2         119 RKK  121 (122)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            653